BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023218
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 178/248 (71%), Gaps = 10/248 (4%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW---ESLESVR 99
T + GDGIGPEI++SVK++F A VP+EWE ++ P + LT +++S+
Sbjct: 23 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSIT 78
Query: 100 RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENT 159
+N V LKGP+ATPIGKGHRSLNLTLRK L+ANVRP S+ G+KT Y++V+L+ IRENT
Sbjct: 79 KNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT 138
Query: 160 EGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDG 219
EGEYSG+EH V GVV+S+K+ITR AS RV YAF YA+ GR RV +HK+ I + DG
Sbjct: 139 EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG 198
Query: 220 LFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL- 276
LF+ +E++++YP++T E +IDN + +V NP+A+ V V PNLYGDI+SDL +GL
Sbjct: 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLS 258
Query: 277 IGGLGLTP 284
G LGLTP
Sbjct: 259 AGSLGLTP 266
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 178/248 (71%), Gaps = 10/248 (4%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW---ESLESVR 99
T + GDGIGPEI++SVK++F A VP+EWE ++ P + LT +++S+
Sbjct: 23 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSIT 78
Query: 100 RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENT 159
+N V LKGP+ATPIGKGHRSLNLTLRK L+ANVRP S+ G+KT Y++V+L+ IRENT
Sbjct: 79 KNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT 138
Query: 160 EGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDG 219
EGEYSG+EH V GVV+S+K+ITR AS RV YAF YA+ GR RV +HK+ I + DG
Sbjct: 139 EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG 198
Query: 220 LFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL- 276
LF+ +E++++YP++T E +IDN + +V NP+A+ V V PNLYGDI+SDL +GL
Sbjct: 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLS 258
Query: 277 IGGLGLTP 284
G LGLTP
Sbjct: 259 AGSLGLTP 266
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 163/243 (67%), Gaps = 6/243 (2%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
T TL PGDG+G EI +SV+ +F +P++WE I +E++ES++RN
Sbjct: 18 FTVTLIPGDGVGKEITDSVRTIFEAENIPIDWET----INIKQTDHKEGVYEAVESLKRN 73
Query: 102 KVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160
K+GLKG TP + GH SLN+ LRK+L++YANV SL G KTR D++LI IRENTE
Sbjct: 74 KIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTE 133
Query: 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL 220
GE+SGLEH+ V GVVESLK++TR + R+A +AF +AK + R+ V+A+HKANIM+ DGL
Sbjct: 134 GEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGL 193
Query: 221 FLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
F E+ +K YP+I +++DN M V P FDVLV P++YG I+ ++ A LIGG
Sbjct: 194 FRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGG 253
Query: 280 LGL 282
GL
Sbjct: 254 PGL 256
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 159/243 (65%), Gaps = 6/243 (2%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
T TL PGDG+G EI +SV+ +F +P++WE I +E++ES++RN
Sbjct: 18 FTVTLIPGDGVGKEITDSVRTIFEAENIPIDWET----INIKQTDHKEGVYEAVESLKRN 73
Query: 102 KVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160
K+GLKG TP + GH SLN+ LRK+L++YANV SL G KTR D++LI IRENTE
Sbjct: 74 KIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTE 133
Query: 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL 220
GE+SGLEH+ V GVVESLK+ TR + R+A +AF +AK + R+ V+A+HKANI + DGL
Sbjct: 134 GEFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSVTAVHKANIXKLGDGL 193
Query: 221 FLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
F E+ +K YP+I +++DN V P FDVLV P+ YG I+ ++ A LIGG
Sbjct: 194 FRNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGG 253
Query: 280 LGL 282
GL
Sbjct: 254 PGL 256
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPR-TQSFLTWESLESVRRNKV 103
T+ PGDGIGPE E+ +V A+ P+ +E G + R S + E++ES+R+ +V
Sbjct: 23 TVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRV 82
Query: 104 GLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD--VNLITIRENTEG 161
LKGP+ TP+G G +S N+TLRK YANVRP P T Y ++L+ +REN E
Sbjct: 83 VLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVED 142
Query: 162 EYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 221
Y+G+EH V ++LK+I+ + S ++ +AF A+ GR++V K+NIM+ +G
Sbjct: 143 LYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTL 202
Query: 222 LKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLG 281
+ +VA++YP+I +++DN LVK P F+V+V N+ GDI+SDL +GLIGGLG
Sbjct: 203 KRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLG 262
Query: 282 LTP 284
P
Sbjct: 263 FAP 265
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 145/246 (58%), Gaps = 11/246 (4%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESV 98
T L GDGIGPEI K++ +P+E+ E G R L +SL+ +
Sbjct: 3 TVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKII 62
Query: 99 RRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIREN 158
+ + LKGP +G+ + + LR+ ++YAN+RP S+PG T+Y +V+++ +REN
Sbjct: 63 DKADIILKGP----VGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVREN 118
Query: 159 TEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTD 218
TE Y G EH V GV +KIITR AS R+A+ ++A R++V+ +HKAN+M+ TD
Sbjct: 119 TEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRITD 177
Query: 219 GLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG 278
GLF + CR V + ++ Y E+ +D LV+NP FDV+V N+YGDI+SD + + G
Sbjct: 178 GLFAEACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235
Query: 279 GLGLTP 284
LG+ P
Sbjct: 236 SLGIAP 241
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++E + L
Sbjct: 7 LIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATL 66
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G +P K G LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 67 FGAATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 125
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 126 VEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 184
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC M LV P FDV+V NL GDI+SDL AGL+GGLGL
Sbjct: 185 TVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLA 244
Query: 284 P 284
P
Sbjct: 245 P 245
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++E + L
Sbjct: 6 LIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATL 65
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G +P K G LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 66 FGAATSPTRKVPGFFGAIRYLRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 124
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 125 VEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 183
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC M LV P FDV+V NL GDI+SDL AGL+GGLGL
Sbjct: 184 TVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLA 243
Query: 284 P 284
P
Sbjct: 244 P 244
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 4/241 (1%)
Query: 46 LFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGL 105
L GDGIG E+ + ++V +P+E+ E G E R + + E++ + L
Sbjct: 7 LIEGDGIGYEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVVKILSCHATL 66
Query: 106 KGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEY 163
G P K G + LR+ L+LYANVRP S P +R V+L+ +RENTEG Y
Sbjct: 67 FGAATIPTRKVPGFFGAIMALRRRLDLYANVRPAKSRPVPGSR-PGVDLVIVRENTEGLY 125
Query: 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK 223
E + + V + +I+++AS R+ A A+ R+ + HKAN++ T GLFL
Sbjct: 126 VEQERRYLD-VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLD 184
Query: 224 CCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+EVA+ +P + +++++DNC LV P +DV+V NL GDI+SDL AGL+GGLGL
Sbjct: 185 TVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGGLGLA 244
Query: 284 P 284
P
Sbjct: 245 P 245
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 51/294 (17%)
Query: 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVE-------WEEHYVGTEIDPRTQSFLTW 92
P+ A GDG+GPE+ ES +V A V W E G + L
Sbjct: 35 NPVVA-FIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPK 93
Query: 93 ESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDV 150
+LE +R +V LKGP+ TP+G G+RSLN+ +R+ L+LYAN+RP Y P D V
Sbjct: 94 ATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRV 153
Query: 151 NLITIRENTEGEYSGLEH--------QVVRGVVESLKI------------ITRQASLRVA 190
+++ RENTE Y+G+E ++ R + E I I+R A+ R+
Sbjct: 154 DMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLM 213
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE--ITYEEV------- 240
E A +A +G V+ +HK NIM+ T+G F++ EVA EK+ E +T +EV
Sbjct: 214 ERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGV 273
Query: 241 -----------VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLT 283
+ DN ++ P + V+V PNL GD ISD + L+GG+G+
Sbjct: 274 RPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMA 327
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 52/288 (18%)
Query: 47 FPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK 102
F GDGIG ++ + +V A V W + Y G + ++L ++L +++ +
Sbjct: 33 FEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFR 92
Query: 103 VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENT 159
V LKGP+ TP+G G+RSLN+T+R+ L+LYANVRP Y L G + + VN + RENT
Sbjct: 93 VALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENT 152
Query: 160 EGEYSGLEHQVVRGVVESLKI----------------------ITRQASLRVAEYAFHYA 197
E Y+G+E RG E+LK+ I+ A+ R+ A YA
Sbjct: 153 EDVYAGIEWP--RGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYA 210
Query: 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-------------------KYPE--IT 236
+ R+ V+ +HK NIM+ T+G F EVA+ K PE I
Sbjct: 211 IENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIV 270
Query: 237 YEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
++ + DN ++ +DV+ +PNL GD +SD A LIGGLG+ P
Sbjct: 271 VKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAP 318
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 141/271 (52%), Gaps = 32/271 (11%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDP------RTQSFLTWESL 95
I L P DGIG E+ + +++ +P + + + ++D RT L ++
Sbjct: 11 IVLGLIPADGIGKEVVPAARRLMEN--LPAKHKLKFDFIDLDAGWGTFERTGKALPERTV 68
Query: 96 ESVRRN-KVGLKGPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNL 152
E ++ L G + +P K G+ S + LRK++ LYANVRP SL G K + V+L
Sbjct: 69 ERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAKGK--PVDL 126
Query: 153 ITIRENTEGEYSGLEHQVV----RGVVESLKIITRQASLRVAEYAFHYAKT--------- 199
+ +RENTE Y E V + V E+++ I+ +AS ++ + AF AK+
Sbjct: 127 VIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGT 186
Query: 200 ---HGRERVSAIHKANIMQKTDGLFLKCCREVAE---KYPEITYEEVVIDNCCMMLVKNP 253
H + V+ IHK+N+M TDGLF + CR Y I +E ++D+ L + P
Sbjct: 187 YSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREP 246
Query: 254 AAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
FDV+V PNLYGDI+SD A LIG LGL P
Sbjct: 247 ECFDVVVAPNLYGDILSDGAASLIGSLGLVP 277
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 138/305 (45%), Gaps = 66/305 (21%)
Query: 46 LFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESV 98
GDG GP+I + +V A E + W+E Y G + +T +L E+L+ +
Sbjct: 24 FIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVI 83
Query: 99 RRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITI 155
R + +KGP+ TP+G G RSLN+ LR+EL+L+ +RP G + R +D +++
Sbjct: 84 REYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSPVKRPEDTDMVIF 143
Query: 156 RENTEGEYSGLEHQVVRGVVESL-----------------------KIITRQASLRVAEY 192
RENTE Y+G+E+ V+ L K ++ + + R+
Sbjct: 144 RENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRA 203
Query: 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-----------YPEITYE--- 238
A YA HGR+ V+ +HK NIM+ T+G F E+AEK Y I E
Sbjct: 204 AIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGK 263
Query: 239 -------------------EVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
+ + D ++ P FDV+ NL GD ISD A +GG
Sbjct: 264 DAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGG 323
Query: 280 LGLTP 284
+G+ P
Sbjct: 324 IGIAP 328
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 143/282 (50%), Gaps = 48/282 (17%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
GDGIGPEI + +V A ++W E Y G + + E+ E + +
Sbjct: 32 GDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKY 91
Query: 102 KVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIREN 158
+V LKGP+ TPIGKG +S+N+ +R L+LYAN+RP + G ++ + V++I REN
Sbjct: 92 RVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFREN 151
Query: 159 TEGEYSGLEH-------QVVRGVVES-------------LKIITRQASLRVAEYAFHYAK 198
T+ Y G+E+ + +R + +K++++ + R+ A YA
Sbjct: 152 TDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAI 211
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPE--ITYEEV--------------- 240
H R++V+ +HK N+M+ T+G F + EVA K Y + +T EE+
Sbjct: 212 EHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDR 271
Query: 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGL 282
+ DN ++ P +D+++ PN+ GD ISD LIG +G+
Sbjct: 272 IADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGM 313
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 26/262 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIGKGH-RSLN-----LTLRKELNLYANVRPCYSL-------PGYKTRY 147
+ L G + P + SL L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERV 125
Query: 148 DDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHGR 202
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+ R
Sbjct: 126 ENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR-R 182
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 183 KKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIVTE 241
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + + G LG+ P
Sbjct: 242 NMFGDILSDLASVITGSLGMLP 263
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 26/262 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIGKGH-RSLN-----LTLRKELNLYANVRPCYSL-------PGYKTRY 147
+ L G + P + SL L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERV 125
Query: 148 DDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHGR 202
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+ R
Sbjct: 126 ENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR-R 182
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 183 KKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTE 241
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SD + + G LG+ P
Sbjct: 242 NMFGDILSDEASVITGSLGMLP 263
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 26/262 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ ++ +V +T +E +G + L E+L+ RR
Sbjct: 6 AVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRR 65
Query: 101 NKVGLKGPMATPIGKGH-RSLN-----LTLRKELNLYANVRPCYSL-------PGYKTRY 147
+ L G + P + SL L LRKE+ L+AN+RP + P + R
Sbjct: 66 SDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERV 125
Query: 148 DDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHGR 202
++V+L+ +RE T G Y G + RG VV++L TR+ R+ E AF A+ R
Sbjct: 126 ENVDLVIVRELTGGLYFGRPSER-RGPGENEVVDTLAY-TREEIERIIEKAFQLAQIR-R 182
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
++++++ KAN+++ + ++ + E A+KYP++ +++D+ M L+ NP FDV+V
Sbjct: 183 KKLASVDKANVLESSR-MWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTE 241
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SD + + G LG+ P
Sbjct: 242 NMFGDILSDEASVITGSLGMLP 263
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K ++ + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 32 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 88
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 89 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 148
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 149 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 208
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 209 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 268
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 269 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 322
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 139/294 (47%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E ++G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 136/261 (52%), Gaps = 24/261 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEV----PVEWEEHYVGTEIDPRTQSFLTWESLESVRR 100
+ PGDGIGPE+ E+ +V + E+E +G + L E+L+ R
Sbjct: 27 AVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRG 86
Query: 101 NKVGLKGPMATPIGKGHRSLN------LTLRKELNLYANVRPCY-------SLPGYKTRY 147
+ L G + P + S L +RK L+L+AN+RP + P K
Sbjct: 87 SDAILLGAVGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVI 146
Query: 148 DDVNLITIRENTEGEYSGLEHQVVR----GVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
+ V+L+ +RE T G Y G + V++L + TR+ R+ AF A T ++
Sbjct: 147 EGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFELALTR-KK 204
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
+V+++ KAN+++ + L+ + EVA++YP++ E +++DN M L++NP FDV+V N
Sbjct: 205 KVTSVDKANVLESSR-LWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTEN 263
Query: 264 LYGDIISDLCAGLIGGLGLTP 284
++GDI+SD + + G LG+ P
Sbjct: 264 MFGDILSDEASMITGSLGMLP 284
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRDLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRXLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R LN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRELNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +H NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V + GP+ TP+G G RSLN+ LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIMGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 58/319 (18%)
Query: 23 PNPNLALPIARAFSSDIT--PITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEW 73
P + + + FS +++ PI + GDG G +I + +V A + + W
Sbjct: 17 PEGGDKITVNKDFSLNVSDQPIIPYI-EGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHW 75
Query: 74 EEHYVGTEIDP--RTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLY 131
E Y G + +L E+L+ ++ V +KGP+ TP+G G RSLN+ LR+EL+LY
Sbjct: 76 MEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLY 135
Query: 132 ANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLE--------HQVVRGVVESL-- 178
+RP G + + N++ REN+E Y+G+E +V++ + E +
Sbjct: 136 VCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGV 195
Query: 179 -------------KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCC 225
K ++++ + R+ A YA + R+ V+ +HK NIM+ T+G F
Sbjct: 196 KKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAG 255
Query: 226 REVAEKY--------------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLY 265
+A+K EI ++ + D ++ PA +DV+ NL
Sbjct: 256 YALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLN 315
Query: 266 GDIISDLCAGLIGGLGLTP 284
GD ISD A +GG+G+ P
Sbjct: 316 GDYISDALAAQVGGIGIAP 334
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G RSL + LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 21/261 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPF-PEPTRK 59
Query: 97 SVRRNKVGLKGPMATP-IGKGHRSLN-----LTLRKELNLYANVRPCYSL-------PGY 143
V + L G + P + R L L++RK+L+L+AN+RP P
Sbjct: 60 GVEEAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLK 119
Query: 144 KTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
K D+V+ + +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 KEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTP 284
++GDI+SDL + L G LGL P
Sbjct: 238 IFGDILSDLASVLPGSLGLLP 258
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF +A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 70/305 (22%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVG---TEIDPRTQSFLTWESLESV 98
GDGIG ++ +++ V A + + W E + G ++ Q +L E++ ++
Sbjct: 34 GDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQ-YLPDETMAAI 92
Query: 99 RRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT--RY-DDVNLITI 155
R KV +KGP+ TP+G G RSLN+ +R++L+LY +RP G + R+ + V+++
Sbjct: 93 REYKVAIKGPLETPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIF 152
Query: 156 RENTEGEYSGLE--------HQVVR------GVVE---------SLKIITRQASLRVAEY 192
REN+E Y+G+E +++R GV + +K ++ + S R+
Sbjct: 153 RENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRR 212
Query: 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-------------------- 232
YA HG+ VS +HK NIM+ T+G F +AE+
Sbjct: 213 TIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGK 272
Query: 233 -------------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGG 279
++ ++V+ DN ++ P + V+ NL GD +SD A +GG
Sbjct: 273 AAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGG 332
Query: 280 LGLTP 284
+G+ P
Sbjct: 333 IGMAP 337
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 61/294 (20%)
Query: 49 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSF-----LTWESLE 96
GDGIG ++ ++ +V A E + W E Y G + TQ + L E+L+
Sbjct: 34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLD 90
Query: 97 SVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLI 153
+R +V +KGP+ TP+G G R L + LR+EL+LY +RP G + +++
Sbjct: 91 LIREYRVAIKGPLTTPVGGGIRELLVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMV 150
Query: 154 TIRENTEGEYSGLE--------HQVVRGVVESL---------------KIITRQASLRVA 190
REN+E Y+G+E +V++ + E + K + + + R+
Sbjct: 151 IFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKRLV 210
Query: 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----------------KYP- 233
A YA + R+ V+ +HK NIM+ T+G F ++A K P
Sbjct: 211 RAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Query: 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
EI ++V+ D ++ PA +DV+ NL GD ISD A +GG+G+ P
Sbjct: 271 TGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAP 324
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 23/259 (8%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LTWES 94
+ PGDGIGPE+ E+ +V R + + + +E + G ID + F E
Sbjct: 4 AVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEE 63
Query: 95 LESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD---- 148
E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 64 AEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEE 121
Query: 149 ---DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERV 205
V+++ +RE T G Y G + + + ++ RVA AF A+ R+ V
Sbjct: 122 IARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-RKHV 180
Query: 206 SAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLY 265
++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N++
Sbjct: 181 VSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 266 GDIISDLCAGLIGGLGLTP 284
GDI+SDL + L G LGL P
Sbjct: 240 GDILSDLASVLPGSLGLLP 258
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 63
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 64 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 121
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 122 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-R 180
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 181 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 239
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 240 NIFGDILSDLASVLPGSLGLLP 261
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 21/261 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPF-PEPTRK 59
Query: 97 SVRRNKVGLKGPMATPIGKG-HRSLN-----LTLRKELNLYANVRPCYSLPGYKTRYD-- 148
V + L G + P G R ++ L+LRK +L+AN+RP PG +
Sbjct: 60 GVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTP 284
++GDI+SDL + L G LGL P
Sbjct: 238 IFGDILSDLASVLPGSLGLLP 258
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 23/262 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGPMATPIGKGHRSLN--LTLRKELNLYANVRPCYSLPGYKTRYD- 148
E E+V VG GP + + R L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPL 118
Query: 149 ------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
V+++ +RE T G Y G + + + ++ RVA AF A+ R
Sbjct: 119 KEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGARKR-R 177
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SDL + L G LGL P
Sbjct: 237 NIFGDILSDLASVLPGSLGLLP 258
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 23/261 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSF-----LT 91
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKG 60
Query: 92 WESLESVRRNKVGLKGP-MATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD-- 148
E E+V VG GP T + + L L+LRK +L+AN+RP PG +
Sbjct: 61 VEEAEAVLLGSVG--GPKWGTGSVRPEQGL-LSLRKSQDLFANLRPAKVFPGLERLSPLK 117
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 118 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 176
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 177 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 235
Query: 264 LYGDIISDLCAGLIGGLGLTP 284
++GDI+SDL + L G LGL P
Sbjct: 236 IFGDILSDLASVLPGSLGLLP 256
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 21/261 (8%)
Query: 42 ITATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEH-YVGTEIDPRTQSFLTWESLE 96
+ + PGDGIGPE+ E+ +V R + + + +E + G ID + F + +
Sbjct: 1 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPF-PEPTRK 59
Query: 97 SVRRNKVGLKGPMATPIGKG-HRSLN-----LTLRKELNLYANVRPCYSLPGYKTRYD-- 148
V + L G + P G R ++ L+LRK +L+AN+RP PG +
Sbjct: 60 GVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119
Query: 149 -----DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE 203
V+++ +RE T G Y G + + + ++ RVA AF A+ R+
Sbjct: 120 EEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RK 178
Query: 204 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263
V ++ KAN+++ + + K EV YP++ E +D M LV++PA FDV+V N
Sbjct: 179 HVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGN 237
Query: 264 LYGDIISDLCAGLIGGLGLTP 284
++GDI+SDL + L G LGL P
Sbjct: 238 IFGDILSDLASVLPGSLGLLP 258
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 125/262 (47%), Gaps = 27/262 (10%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPV--EWEE---HYVGTEID------PRTQSFLTWE 93
+ PGDGIGPE+ +V E +E+ H G ID P + E
Sbjct: 16 AVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLE 75
Query: 94 SLESVRRNKVGLKGPMATPIGKGHR---SLNLTLRKELNLYANVRPC--------YSLPG 142
+ +++ VG GP + R L LRK LNLYAN+RP S
Sbjct: 76 A-DAIFLGSVG--GPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLK 132
Query: 143 YKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202
K V+L+T+RE + G Y G + I R+ R+A AF AK R
Sbjct: 133 EKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNR-R 191
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
++V+++ KAN++ + L+ K EVA +YP++ + +DN M L+ P+ FDV++
Sbjct: 192 KKVTSVDKANVLYSS-MLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTT 250
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SD A L G LGL P
Sbjct: 251 NMFGDILSDESAALPGSLGLLP 272
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 31/265 (11%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-----TEIDPRTQSFLTWE-S 94
+F GDGIGPEI + +QV + A + + E VG DP + L +
Sbjct: 5 AIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMA 64
Query: 95 LESVRRNKVGLKGPM--ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR------ 146
++V VG GP A P K L LRK L+LYAN+RP P
Sbjct: 65 ADAVILGAVG--GPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPE 122
Query: 147 -YDDVNLITIRENTE----GEYSGLEHQVVRGVVESLKIITRQAS--LRVAEYAFHYAKT 199
DV+++ +RE T G+ GLE V+ G + R+A AF A+
Sbjct: 123 LVRDVDILVVRELTGDIYFGQPRGLE--VIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQG 180
Query: 200 HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVL 259
R+++ ++ KAN+++ T L+ + EVA YP++ + +DN M L++ PA FDVL
Sbjct: 181 R-RKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238
Query: 260 VMPNLYGDIISDLCAGLIGGLGLTP 284
+ N++GDI+SD + L G +G+ P
Sbjct: 239 LTGNMFGDILSDEASQLTGSIGMLP 263
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 124/264 (46%), Gaps = 36/264 (13%)
Query: 48 PGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW----------ESLES 97
PGDGIG E+ +V A + +H + E D + + + E
Sbjct: 12 PGDGIGLEVLPEGIRVLEAAAL-----KHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQ 66
Query: 98 VRRNKVGLKGPMATPIG-KGHRSLN---LTLRKELNLYANVRPCYSLPGY-----KTRYD 148
+++ G + P H SL L R+E + Y N+RP PG +
Sbjct: 67 LKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVG 126
Query: 149 DVNLITIRENTEGEYSGL--------EHQVVRGVVESLKIITRQASLRVAEYAFHYAKTH 200
D++ + +RENTEGEYS L E+++V + ES I TR+ R+ +YAF A+
Sbjct: 127 DIDFVVVRENTEGEYSSLGGIMFENTENEIV--IQES--IFTRRGVDRILKYAFDLAEKR 182
Query: 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260
R+ V++ K+N M + + K +A YP +++++ ID C V P FDV+V
Sbjct: 183 ERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVV 242
Query: 261 MPNLYGDIISDLCAGLIGGLGLTP 284
NL+GDI+SDL G +G+ P
Sbjct: 243 ASNLFGDILSDLGPACAGTIGIAP 266
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 122 LTLRKELNLYANVRPCYSLPGY-----KTRYDDVNLITIRENTEGEYSGL--------EH 168
L R+E + Y N+RP PG + D++ + +RENTEGEYS L E+
Sbjct: 95 LKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIXFENTEN 154
Query: 169 QVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV 228
++V + ES I TR+ R+ +YAF A+ R+ V++ K+N + + K
Sbjct: 155 EIV--IQES--IFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGXAISXPYWDKRTEAX 210
Query: 229 AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
A YP +++++ ID C V P FDV+V NL+GDI+SDL G +G+ P
Sbjct: 211 AAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAP 266
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 126/265 (47%), Gaps = 29/265 (10%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWE---EHYV--GTEIDPRTQ-----SFLTWES 94
+ PGDGIGPE+ +V HY G ID Q + E
Sbjct: 8 AVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQ 67
Query: 95 LESVRRNKVGLKGPM---ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT----RY 147
++V VG GP P + R L LRK L++N+RP G + R
Sbjct: 68 ADAVLFGSVG--GPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRA 125
Query: 148 D----DVNLITIRENTEGEYSGL-EHQVVRGVVE---SLKIITRQASLRVAEYAFHYAKT 199
D +++ +RE T G Y G + + G E ++ R R+A AF A+
Sbjct: 126 DIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARK 185
Query: 200 HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVL 259
R +V++I KAN++Q + L+ + E+A +YP++ + IDN M L+K+P+ FDVL
Sbjct: 186 R-RHKVTSIDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVL 243
Query: 260 VMPNLYGDIISDLCAGLIGGLGLTP 284
+ NL+GDI+SD CA + G +G+ P
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLP 268
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 125/264 (47%), Gaps = 27/264 (10%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWE---EHYV--GTEIDPRTQSFLTWESLESVR 99
+ PGDGIGPE+ +V + HY G ID L ++E
Sbjct: 8 AVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHP-LPKATVEGCE 66
Query: 100 RNKVGLKGPMATPI-------GKGHRSLNLTLRKELNLYANVRPCYSLPGYKT----RYD 148
+ L G + P + R L LRK L++N+RP G + R D
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 149 ----DVNLITIRENTEGEYSGL-EHQVVRGVVE---SLKIITRQASLRVAEYAFHYAKTH 200
+++ +RE T G Y G + + G E ++ R R+A AF A+
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKR 186
Query: 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260
R +V++I KAN++Q + L+ + +VA+ YP++ + IDN M L+K+P+ FDVL+
Sbjct: 187 -RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 261 MPNLYGDIISDLCAGLIGGLGLTP 284
NL+GDI+SD CA + G +G+ P
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLP 268
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 15/249 (6%)
Query: 46 LFPGDGIGPEI-AESVKQVFRTAEVP-VEWEEHYVGTEIDPRTQSFLTWESLESVRRNK- 102
+ GDGIGPE+ AE+VK + A VP V+ + +G T L + +R +
Sbjct: 6 IIAGDGIGPEVTAEAVKVL--DAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDA 63
Query: 103 --VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLITIRE 157
+G G + P G R L L LR EL+ + N+RP PG + ++ + +RE
Sbjct: 64 ILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVRE 123
Query: 158 NTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANI 213
TEG Y+G + G V + + T RV AF A+ R+ ++ +HK N+
Sbjct: 124 GTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRR-RKHLTLVHKTNV 182
Query: 214 MQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLC 273
+ GL+L+ EV E YP++ +D + ++ +P FDV+V NL+GDII+DL
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 274 AGLIGGLGL 282
A + GG+GL
Sbjct: 243 AAVCGGIGL 251
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 31/264 (11%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLTW-ES 94
+ GDGIGPE+ ++V + E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPM---ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
++V VG GP P + R L LR L+ N+RP PG + R
Sbjct: 77 ADAVLFGSVG--GPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G E+ + +R+ R+A+ AF A+
Sbjct: 135 DISEKGFDILCVRELTGGIYFG-KPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQ 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ + L+ + EVA+ YP++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGL 282
++ NL+GDI+SD A L G +GL
Sbjct: 252 MLCSNLFGDIVSDEIAMLTGSMGL 275
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 31/264 (11%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLTW-ES 94
+ GDGIGPE+ ++V E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPM---ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
++V VG GP P + R L LR L+ N+RP PG + R
Sbjct: 77 ADAVLFGSVG--GPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G E+ + +R+ R+A+ AF A+
Sbjct: 135 DISEKGFDILCVRELTGGIYFG-KPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQ 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ L+ + EVA+ YP++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVL-ACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGL 282
++ NL+GDI+SD A L G +GL
Sbjct: 252 MLCSNLFGDIVSDEIAMLTGSMGL 275
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 125/269 (46%), Gaps = 34/269 (12%)
Query: 43 TATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESV 98
T TL PGDGIGPE+ K V + A V + E +G L E++ +
Sbjct: 44 TITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAA 103
Query: 99 RRNKVGLKGPMATPIGKGHRSLN-----------LTLRKELNLYANVRPCYSLPGY---- 143
+ + L G + G++ N L +R L ++AN+RP LP
Sbjct: 104 KESDAVLLGAIG-----GYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAS 158
Query: 144 ---KTRYDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFH 195
+ + V+L+ +RE T G Y G + V + ++ R+A AF
Sbjct: 159 TLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFE 218
Query: 196 YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAA 255
A+ R ++ ++ KAN+++ + L+ K +A +YP++ + +DN M LV++P
Sbjct: 219 TARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQ 276
Query: 256 FDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
FD +V N++GDI+SD + + G +G+ P
Sbjct: 277 FDTIVTNNIFGDILSDEASMITGSIGMLP 305
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 31/264 (11%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVG-TEID----PRTQSFLTW-ES 94
+ GDGIGPE+ ++V + E + +E+ E+ VG ID P ++ L E+
Sbjct: 17 AVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEA 76
Query: 95 LESVRRNKVGLKGPM---ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYK----TRY 147
+++ VG GP P + R L LR L+ N+RP G + R
Sbjct: 77 ADAILFGSVG--GPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 134
Query: 148 D----DVNLITIRENTEGEYSGLEHQVVRGVVESLKII-----TRQASLRVAEYAFHYAK 198
D +++ +RE T G Y G + + +G ES + +R+ R+A AF A+
Sbjct: 135 DISARGFDVLCVRELTGGIYFG-KPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAAR 193
Query: 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258
R++V+++ KAN++ + L+ + EVA +P++ E + IDN M L++ P FDV
Sbjct: 194 GR-RKKVTSVDKANVLACSV-LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDV 251
Query: 259 LVMPNLYGDIISDLCAGLIGGLGL 282
++ NL+GDI+SD A L G +GL
Sbjct: 252 MLCSNLFGDILSDEIAMLTGSMGL 275
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 24/252 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-TEIDPRTQSFLTWESLESVR 99
+ GDGIGP + + ++ + E E +G ID + L+ E+L+
Sbjct: 10 AVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVA-LSDETLKLCE 68
Query: 100 RNKVGLKGPMATPIGKG-------HRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDD- 149
++ L G + P R+ L LRK NL+AN+RPC Y + + +
Sbjct: 69 QSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNE 128
Query: 150 -----VNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRER 204
V+++ +RE T G Y G + + + +I T++ R+A AF A+ +++
Sbjct: 129 IIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KKK 186
Query: 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264
V I KAN++ + L+ + VA+ Y +I E + +DN M +VKNP+ FDV++ NL
Sbjct: 187 VHLIDKANVLASSI-LWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNL 245
Query: 265 YGDIISDLCAGL 276
+GDI+SD A +
Sbjct: 246 FGDILSDELAAI 257
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 24/252 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVF----RTAEVPVEWEEHYVG-TEIDPRTQSFLTWESLESVR 99
+ GDGIGP + + ++ + E E +G ID + L+ E+L+
Sbjct: 10 AVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVA-LSDETLKLCE 68
Query: 100 RNKVGLKGPMATPIGKG-------HRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDD- 149
++ L G + P R+ L LRK NL+AN+RPC Y + + +
Sbjct: 69 QSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNE 128
Query: 150 -----VNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRER 204
V+++ +RE T G Y G + + + +I T++ R+A AF A+ +++
Sbjct: 129 IIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KKK 186
Query: 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264
V I KAN++ + L+ + VA+ Y +I E +DN +VKNP+ FDV + NL
Sbjct: 187 VHLIDKANVLASSI-LWREVVANVAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLCSNL 245
Query: 265 YGDIISDLCAGL 276
+GDI+SD A +
Sbjct: 246 FGDILSDELAAI 257
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 24/262 (9%)
Query: 45 TLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVG 104
+ PGDGIGPEI +V + E E VG + L +L +
Sbjct: 12 AVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASGHPLPDATLALAKEADAI 71
Query: 105 LKGPMAT-PIGKGHRSLN-----LTLRKELNLYANVRP--CY-----SLPGYKTRYDDVN 151
L G + R+L L LRK L L+AN RP CY + P ++
Sbjct: 72 LFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLD 131
Query: 152 LITIRENTEGEYSGLEHQV-------VRGVVESLKII--TRQASLRVAEYAFHYAKTHGR 202
++ +RE Y G V G E + + R+A AF A+ +
Sbjct: 132 ILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAK 191
Query: 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
+ +S + K+N+++ T + +V+++Y ++ + +DN M L K P FDV+V
Sbjct: 192 KLLS-VDKSNVLE-TSQFWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQFDVIVTG 249
Query: 263 NLYGDIISDLCAGLIGGLGLTP 284
N++GDI+SD + L G +G+ P
Sbjct: 250 NMFGDILSDEASMLTGSIGMLP 271
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 210 KANIMQKTDGLFLKCCREVAE-----KYPE--ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++K DG F +EV E K+ + I YE +ID+ ++K+ F ++ +
Sbjct: 228 KNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALK 286
Query: 263 NLYGDIISDLCAGLIGGLGL 282
N GD+ SD+ A G LGL
Sbjct: 287 NYDGDVQSDIVAQGFGSLGL 306
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 210 KANIMQKTDGLFLKCCREVAEKYPE-------ITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++ DG F +E+ EK+ + I YE +ID+ ++K+ F V
Sbjct: 212 KNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGF-VWACK 270
Query: 263 NLYGDIISDLCAGLIGGLGL 282
N GD+ SD+ A G LGL
Sbjct: 271 NYDGDVQSDILAQGFGSLGL 290
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 210 KANIMQKTDGLFLKCCREVAE-------KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262
K I++ DG F ++V + K ++ YE +ID+ +K + V
Sbjct: 233 KNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDXVASALKWSGGY-VWACK 291
Query: 263 NLYGDIISDLCAGLIGGLGL 282
N GD+ SD+ A G LGL
Sbjct: 292 NYDGDVQSDIVAQGFGSLGL 311
>pdb|2WZS|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
Length = 738
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 3 TQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQ 62
TQ + ++GS+S LST N P +A P F TP T + GDG + +
Sbjct: 4 TQYVNPLMGSQSTFELSTGNTYPAIARPWGMNF---WTPQTGKM--GDGWQYTYTANKIR 58
Query: 63 VFRTAEVPVEWEEHYVGTEIDPRT-QSFLTWESLESVRRNKVGLKGPMATP 112
F+ P W Y I P Q E R + KG +ATP
Sbjct: 59 GFKQTHQPSPWINDYGQFSIMPIVGQPVFD----EEKRASWFAHKGEVATP 105
>pdb|2WVZ|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW1|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
Length = 744
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 3 TQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQ 62
TQ + ++GS+S LST N P +A P F TP T + GDG + +
Sbjct: 4 TQYVNPLMGSQSTFELSTGNTYPAIARPWGMNF---WTPQTGKM--GDGWQYTYTANKIR 58
Query: 63 VFRTAEVPVEWEEHYVGTEIDPRT-QSFLTWESLESVRRNKVGLKGPMATP 112
F+ P W Y I P Q E R + KG +ATP
Sbjct: 59 GFKQTHQPSPWINDYGQFSIMPIVGQPVFD----EEKRASWFAHKGEVATP 105
>pdb|1ZB6|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And 1,6-Dihydroxynaphtalene
pdb|1ZCW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gpp
pdb|1ZDW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And Flaviolin
pdb|1ZDY|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Taps
Length = 307
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 177 SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIT 236
S+ RQ +L +E + A+T E V A+ + + + L LK C+ YP +
Sbjct: 164 SMDYKKRQVNLYFSELS---AQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLN 220
Query: 237 YEEVVIDNCCMMLVKN 252
+E ID C ++ N
Sbjct: 221 WETGKIDRLCFAVISN 236
>pdb|1SAC|A Chain A, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|B Chain B, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|C Chain C, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|D Chain D, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|E Chain E, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1LGN|A Chain A, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|B Chain B, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|C Chain C, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|D Chain D, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|E Chain E, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1GYK|A Chain A, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|B Chain B, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|C Chain C, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|D Chain D, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|E Chain E, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|2A3W|A Chain A, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|B Chain B, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|C Chain C, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|D Chain D, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|E Chain E, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|F Chain F, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|G Chain G, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|H Chain H, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|I Chain I, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|J Chain J, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|K Chain K, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|L Chain L, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|M Chain M, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|N Chain N, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|O Chain O, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|P Chain P, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|Q Chain Q, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|R Chain R, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|S Chain S, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|T Chain T, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3X|A Chain A, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|B Chain B, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|C Chain C, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|D Chain D, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|E Chain E, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|F Chain F, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|G Chain G, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|H Chain H, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|I Chain I, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|J Chain J, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3Y|A Chain A, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|B Chain B, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|C Chain C, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|D Chain D, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|E Chain E, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|3D5O|A Chain A, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|B Chain B, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|C Chain C, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|D Chain D, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|E Chain E, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|2W08|A Chain A, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|B Chain B, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|C Chain C, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|D Chain D, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|E Chain E, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|3KQR|A Chain A, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|B Chain B, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|C Chain C, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|D Chain D, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|E Chain E, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
Length = 204
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 109 MATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGL-- 166
+ TP+ K ++ L R Y+++ YSL Y T+ D L+ +E GEYS
Sbjct: 22 LITPLEKPLQNFTLCFRA----YSDLSRAYSLFSYNTQGRDNELLVYKERV-GEYSLYIG 76
Query: 167 EHQVVRGVVESLKI-----ITRQASLRVAEY 192
H+V V+E ++ ++S +AE+
Sbjct: 77 RHKVTSKVIEKFPAPVHICVSWESSSGIAEF 107
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 235 ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGL 282
+ Y ++ID+ ++++ M N GDI+SD+ A G LGL
Sbjct: 239 VNYRYMLIDDAAAQILRSEGGMLWACM-NYEGDIMSDMIASGFGSLGL 285
>pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|C Chain C, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QED|D Chain D, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 314
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 107 PGFAIGVAVGDSPIGPFKDALGKALITNDXTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 166
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 167 RPRYAKLKKNXVELDGPI 184
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEF|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 159
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 160 RPRYAKLKKNMVELDGPI 177
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
pdb|3QEE|B Chain B, The Structure And Function Of An Arabinan-Specific
Alpha-1,2- Arabinofuranosidase Identified From Screening
The Activities Of Bacterial Gh43 Glycoside Hydrolases
Length = 307
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 48 PGDGIGPEIAESVKQVFR------------TAEVPVEWEEHYVGTEIDPRTQSFLTWES- 94
PG IG + +S F+ T + P++W++ ID Q++L W +
Sbjct: 100 PGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT 159
Query: 95 ---LESVRRNKVGLKGPM 109
+++N V L GP+
Sbjct: 160 RPRYAKLKKNMVELDGPI 177
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 153 ITIRENTEGEYSGLEHQVVRGVVESLKII 181
I + E G Y+G + +V++GV E LK+
Sbjct: 646 IGVEEKEAGVYAGAQDEVIKGVEEGLKVF 674
>pdb|1YIR|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|B Chain B, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|C Chain C, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|D Chain D, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
Length = 408
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 70 PVEWEE----HYVGTEIDPRTQSFLTWESLESVRRNKV--GLKGPMATPIGKG-HRSLNL 122
P+ W E HY+ IDP T++ + + L+ R K+ L+G + G G H + +L
Sbjct: 293 PLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDL 352
Query: 123 TLRKELNLYANVRPCYSLP 141
+ +N+ + C P
Sbjct: 353 PGVEPMNIVVKMSACNGHP 371
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 123 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVR 172
TL+ + LY+ + YK RY+ NL+ RE E E GLE + ++
Sbjct: 546 TLKLDSKLYSEDE----IKAYKERYEAANLVPFREYLEAE--GLESKYIK 589
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 123 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVR 172
TL+ + LY+ + YK RY+ NL+ RE E E GLE + ++
Sbjct: 547 TLKLDSKLYSEDE----IKAYKERYEAANLVPFREYLEAE--GLESKYIK 590
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,376,836
Number of Sequences: 62578
Number of extensions: 336006
Number of successful extensions: 953
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 84
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)