Query 023218
Match_columns 285
No_of_seqs 144 out of 1204
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00118 isocitrate dehydrogen 100.0 6.5E-93 1.4E-97 676.8 28.6 285 1-285 1-285 (372)
2 COG0473 LeuB Isocitrate/isopro 100.0 5.3E-91 1.1E-95 651.1 24.0 247 39-285 1-257 (348)
3 PLN00123 isocitrate dehydrogen 100.0 3.1E-87 6.6E-92 635.0 29.7 267 3-285 3-269 (360)
4 PRK08997 isocitrate dehydrogen 100.0 1.7E-87 3.7E-92 633.3 27.0 245 41-285 2-248 (334)
5 PRK03437 3-isopropylmalate deh 100.0 1.3E-86 2.9E-91 629.7 25.9 246 40-285 3-261 (344)
6 PRK14025 multifunctional 3-iso 100.0 3.6E-86 7.8E-91 623.4 25.8 240 42-285 2-245 (330)
7 TIGR00175 mito_nad_idh isocitr 100.0 3.7E-85 7.9E-90 618.6 28.0 245 39-285 1-246 (333)
8 PRK08194 tartrate dehydrogenas 100.0 2.5E-85 5.5E-90 622.7 25.5 245 40-285 2-261 (352)
9 PRK09222 isocitrate dehydrogen 100.0 3.5E-85 7.7E-90 639.1 26.5 246 40-285 3-250 (482)
10 TIGR02089 TTC tartrate dehydro 100.0 4.6E-85 1E-89 621.3 25.2 246 39-285 1-264 (352)
11 TIGR02924 ICDH_alpha isocitrat 100.0 1.9E-84 4.1E-89 632.1 25.3 243 43-285 2-246 (473)
12 TIGR02088 LEU3_arch isopropylm 100.0 4.5E-84 9.8E-89 608.2 25.3 239 44-285 1-240 (322)
13 PLN02329 3-isopropylmalate deh 100.0 9.2E-84 2E-88 619.2 25.6 244 40-285 45-310 (409)
14 KOG0785 Isocitrate dehydrogena 100.0 9.9E-85 2.1E-89 597.1 16.9 253 33-285 27-279 (365)
15 TIGR00169 leuB 3-isopropylmala 100.0 7.2E-83 1.6E-87 605.7 25.7 241 43-285 1-262 (349)
16 PRK00772 3-isopropylmalate deh 100.0 4.8E-82 1E-86 601.4 25.6 242 41-285 2-265 (358)
17 PRK06451 isocitrate dehydrogen 100.0 3.7E-82 8.1E-87 610.2 24.4 245 40-285 23-318 (412)
18 PRK07006 isocitrate dehydrogen 100.0 1.6E-81 3.4E-86 606.3 25.5 245 40-285 19-318 (409)
19 TIGR00183 prok_nadp_idh isocit 100.0 1.2E-80 2.6E-85 602.1 25.4 245 40-285 26-325 (416)
20 PRK07362 isocitrate dehydrogen 100.0 1.1E-79 2.4E-84 593.6 23.9 245 40-285 28-382 (474)
21 PF00180 Iso_dh: Isocitrate/is 100.0 9.9E-80 2.1E-84 586.0 16.2 242 43-285 1-261 (348)
22 KOG0784 Isocitrate dehydrogena 100.0 2.9E-76 6.4E-81 546.9 20.9 248 36-285 37-285 (375)
23 PRK08299 isocitrate dehydrogen 100.0 1.1E-72 2.5E-77 541.5 24.5 238 41-285 7-291 (402)
24 PLN00103 isocitrate dehydrogen 100.0 1E-71 2.2E-76 536.0 24.1 240 41-285 9-295 (410)
25 TIGR00127 nadp_idh_euk isocitr 100.0 5.4E-67 1.2E-71 502.7 23.0 242 41-285 6-292 (409)
26 PLN03065 isocitrate dehydrogen 100.0 7.1E-66 1.5E-70 501.3 25.9 239 41-285 77-362 (483)
27 PTZ00435 isocitrate dehydrogen 100.0 1.2E-65 2.7E-70 493.8 23.2 243 40-285 8-294 (413)
28 KOG0786 3-isopropylmalate dehy 100.0 1.9E-64 4.2E-69 453.9 14.0 245 40-285 3-266 (363)
29 COG0538 Icd Isocitrate dehydro 100.0 4.1E-61 8.9E-66 452.1 22.3 245 41-285 18-314 (407)
30 PLN00096 isocitrate dehydrogen 100.0 2E-48 4.3E-53 370.8 21.8 236 45-285 2-287 (393)
31 KOG1526 NADP-dependent isocitr 100.0 5.8E-30 1.3E-34 235.7 15.1 246 36-285 13-303 (422)
32 PF12847 Methyltransf_18: Meth 73.4 17 0.00037 27.7 6.8 64 191-263 14-78 (112)
33 PTZ00435 isocitrate dehydrogen 71.3 7.2 0.00016 38.8 5.1 24 149-172 127-150 (413)
34 TIGR00127 nadp_idh_euk isocitr 55.4 12 0.00025 37.3 3.2 23 149-171 124-146 (409)
35 cd00293 USP_Like Usp: Universa 55.3 86 0.0019 23.5 8.9 90 183-274 9-121 (130)
36 PRK03743 pdxA 4-hydroxythreoni 55.2 11 0.00023 36.5 2.9 22 40-61 2-25 (332)
37 PRK12862 malic enzyme; Reviewe 54.2 60 0.0013 34.9 8.5 100 179-278 607-720 (763)
38 PF03602 Cons_hypoth95: Conser 54.1 35 0.00075 29.8 5.8 65 193-262 57-121 (183)
39 PRK11041 DNA-binding transcrip 54.1 76 0.0017 28.5 8.3 34 40-73 34-70 (309)
40 PRK00232 pdxA 4-hydroxythreoni 53.4 12 0.00027 36.1 3.0 22 40-61 3-26 (332)
41 TIGR00853 pts-lac PTS system, 52.4 52 0.0011 25.6 6.0 56 40-108 2-58 (95)
42 COG0655 WrbA Multimeric flavod 52.2 75 0.0016 27.9 7.7 83 43-130 5-100 (207)
43 cd06308 PBP1_sensor_kinase_lik 52.2 1.2E+02 0.0026 26.7 9.1 78 183-263 105-190 (270)
44 PRK10499 PTS system N,N'-diace 51.5 62 0.0013 25.8 6.4 55 41-108 3-58 (106)
45 PRK02746 pdxA 4-hydroxythreoni 49.5 16 0.00034 35.6 3.1 20 42-61 10-31 (345)
46 cd06323 PBP1_ribose_binding Pe 48.2 1.4E+02 0.0029 25.9 8.7 79 183-264 104-190 (268)
47 cd06320 PBP1_allose_binding Pe 47.8 1.5E+02 0.0033 26.0 9.1 62 43-110 1-67 (275)
48 PRK05312 pdxA 4-hydroxythreoni 47.1 17 0.00037 35.2 2.9 21 41-61 3-25 (336)
49 cd06322 PBP1_ABC_sugar_binding 46.9 1.9E+02 0.0041 25.1 9.5 77 184-264 105-188 (267)
50 COG1995 PdxA Pyridoxal phospha 46.4 16 0.00034 35.3 2.5 19 40-58 2-22 (332)
51 PRK07232 bifunctional malic en 46.0 1.5E+02 0.0032 31.9 9.9 99 182-280 602-714 (752)
52 PLN03065 isocitrate dehydrogen 45.7 16 0.00035 37.0 2.6 37 149-187 195-232 (483)
53 TIGR02469 CbiT precorrin-6Y C5 44.0 1.1E+02 0.0023 23.4 6.7 75 192-276 33-112 (124)
54 cd07186 CofD_like LPPG:FO 2-ph 43.8 91 0.002 29.8 7.2 105 89-194 172-302 (303)
55 TIGR02069 cyanophycinase cyano 43.6 66 0.0014 29.5 6.2 62 40-108 27-90 (250)
56 PRK01909 pdxA 4-hydroxythreoni 43.0 21 0.00046 34.4 2.9 21 41-61 5-27 (329)
57 cd01988 Na_H_Antiporter_C The 42.6 1.5E+02 0.0033 22.7 8.1 78 184-264 10-103 (132)
58 TIGR00651 pta phosphate acetyl 42.2 2.2E+02 0.0048 27.0 9.6 98 182-279 157-269 (303)
59 cd06270 PBP1_GalS_like Ligand 41.7 1.9E+02 0.0041 25.2 8.7 22 52-73 13-34 (268)
60 PRK07742 phosphate butyryltran 41.4 3.1E+02 0.0067 25.8 13.0 214 39-284 13-265 (299)
61 cd06313 PBP1_ABC_sugar_binding 41.0 2.5E+02 0.0053 24.9 9.4 21 54-74 15-35 (272)
62 PRK03946 pdxA 4-hydroxythreoni 38.6 22 0.00049 34.0 2.3 19 42-60 2-22 (307)
63 cd01545 PBP1_SalR Ligand-bindi 38.3 2.6E+02 0.0057 24.1 9.1 24 51-74 12-35 (270)
64 PRK15490 Vi polysaccharide bio 37.6 99 0.0022 32.2 6.9 105 174-280 164-305 (578)
65 PF14542 Acetyltransf_CG: GCN5 37.3 99 0.0022 23.0 5.2 39 185-234 39-77 (78)
66 PRK12861 malic enzyme; Reviewe 37.2 2.6E+02 0.0056 30.2 10.1 97 182-278 611-721 (764)
67 PF07820 TraC: TraC-like prote 37.2 48 0.001 26.2 3.5 38 183-233 23-60 (92)
68 cd01574 PBP1_LacI Ligand-bindi 37.1 2.7E+02 0.006 24.0 9.1 20 54-73 15-34 (264)
69 cd01537 PBP1_Repressors_Sugar_ 36.7 2.6E+02 0.0057 23.6 8.8 75 189-264 105-187 (264)
70 cd05564 PTS_IIB_chitobiose_lic 36.1 1E+02 0.0022 23.9 5.3 53 43-108 1-54 (96)
71 KOG3040 Predicted sugar phosph 35.8 1.4E+02 0.003 27.5 6.7 88 189-277 126-221 (262)
72 cd02975 PfPDO_like_N Pyrococcu 35.2 1.4E+02 0.003 23.5 6.1 57 186-244 7-63 (113)
73 cd06294 PBP1_ycjW_transcriptio 35.2 2.7E+02 0.0058 24.1 8.6 22 52-73 18-39 (270)
74 PRK04169 geranylgeranylglycery 34.3 57 0.0012 29.9 4.1 74 84-163 14-92 (232)
75 COG1222 RPT1 ATP-dependent 26S 33.9 78 0.0017 31.3 5.1 67 187-269 230-303 (406)
76 cd06309 PBP1_YtfQ_like Peripla 33.6 2.4E+02 0.0053 24.7 8.1 76 189-265 109-195 (273)
77 cd06305 PBP1_methylthioribose_ 33.6 2.8E+02 0.0061 24.1 8.4 31 43-73 1-34 (273)
78 PRK00107 gidB 16S rRNA methylt 33.5 2.1E+02 0.0045 25.0 7.4 19 193-211 60-78 (187)
79 PRK03371 pdxA 4-hydroxythreoni 33.4 34 0.00074 33.0 2.6 20 42-61 3-24 (326)
80 cd06288 PBP1_sucrose_transcrip 33.3 2.9E+02 0.0064 23.8 8.5 21 53-73 15-35 (269)
81 cd06273 PBP1_GntR_like_1 This 33.1 3.1E+02 0.0067 23.7 8.6 24 50-73 11-34 (268)
82 cd06300 PBP1_ABC_sugar_binding 32.9 3.3E+02 0.0072 23.7 9.2 62 43-110 1-70 (272)
83 KOG1014 17 beta-hydroxysteroid 32.0 80 0.0017 30.3 4.8 44 191-243 64-107 (312)
84 cd06287 PBP1_LacI_like_8 Ligan 30.9 3.8E+02 0.0083 23.8 9.3 20 54-73 23-42 (269)
85 cd06272 PBP1_hexuronate_repres 30.2 3E+02 0.0066 23.8 8.1 21 245-265 162-182 (261)
86 PRK10310 PTS system galactitol 29.7 1.8E+02 0.004 22.4 5.8 55 41-108 2-58 (94)
87 TIGR00477 tehB tellurite resis 29.7 1.7E+02 0.0037 25.3 6.3 61 193-266 45-105 (195)
88 PF01547 SBP_bac_1: Bacterial 29.7 1.1E+02 0.0025 26.9 5.3 42 220-261 9-57 (315)
89 cd06280 PBP1_LacI_like_4 Ligan 29.7 3.6E+02 0.0077 23.4 8.4 75 188-265 101-182 (263)
90 cd06310 PBP1_ABC_sugar_binding 29.6 3.8E+02 0.0082 23.3 9.4 32 43-74 1-35 (273)
91 TIGR00557 pdxA 4-hydroxythreon 28.2 43 0.00092 32.2 2.3 19 180-198 170-188 (320)
92 TIGR01819 F420_cofD LPPG:FO 2- 27.6 26 0.00056 33.4 0.7 19 90-108 172-190 (297)
93 COG0391 Uncharacterized conser 27.4 82 0.0018 30.4 4.1 51 91-142 180-235 (323)
94 KOG0189 Phosphoadenosine phosp 27.1 1.5E+02 0.0033 27.2 5.4 59 194-256 62-122 (261)
95 PRK13606 LPPG:FO 2-phospho-L-l 27.0 29 0.00063 33.1 0.9 20 89-108 174-193 (303)
96 KOG3812 L-type voltage-depende 26.7 2.8E+02 0.0061 27.3 7.5 124 124-271 202-346 (475)
97 PF03358 FMN_red: NADPH-depend 26.4 1.6E+02 0.0035 23.8 5.3 82 42-130 1-95 (152)
98 cd06311 PBP1_ABC_sugar_binding 26.3 4.4E+02 0.0095 23.0 8.9 51 54-110 15-70 (274)
99 cd06293 PBP1_LacI_like_11 Liga 25.7 4.4E+02 0.0096 22.8 8.5 21 53-73 14-34 (269)
100 PRK09653 eutD phosphotransacet 25.7 4.3E+02 0.0093 25.1 8.7 97 182-279 173-284 (324)
101 PF00582 Usp: Universal stress 25.6 98 0.0021 23.4 3.6 27 182-209 11-37 (140)
102 cd01536 PBP1_ABC_sugar_binding 25.4 4.3E+02 0.0092 22.5 9.4 24 50-73 11-34 (267)
103 cd06278 PBP1_LacI_like_2 Ligan 24.9 4.4E+02 0.0096 22.6 8.5 75 189-264 102-183 (266)
104 cd06063 H2MP_Cyano-H2up This g 24.9 1.1E+02 0.0024 25.4 4.1 45 49-106 13-57 (146)
105 TIGR03863 PQQ_ABC_bind ABC tra 24.6 2.6E+02 0.0056 26.6 7.0 81 178-267 108-199 (347)
106 PRK09701 D-allose transporter 24.0 5.5E+02 0.012 23.4 9.2 62 42-109 25-91 (311)
107 PF00532 Peripla_BP_1: Peripla 23.8 1.7E+02 0.0037 26.7 5.4 32 42-73 2-36 (279)
108 COG4678 Muramidase (phage lamb 23.4 1.4E+02 0.0031 26.2 4.4 54 199-252 69-126 (180)
109 KOG0907 Thioredoxin [Posttrans 23.4 2E+02 0.0043 22.8 5.1 56 203-263 21-77 (106)
110 cd06289 PBP1_MalI_like Ligand- 23.3 4.8E+02 0.01 22.4 8.7 19 247-265 170-188 (268)
111 PF00205 TPP_enzyme_M: Thiamin 23.2 95 0.0021 25.0 3.3 65 42-108 12-86 (137)
112 PRK00811 spermidine synthase; 23.1 2E+02 0.0043 26.7 5.8 26 236-262 132-157 (283)
113 COG0375 HybF Zn finger protein 23.0 1.2E+02 0.0027 24.9 3.8 25 185-209 6-30 (115)
114 cd07981 TAF12 TATA Binding Pro 22.8 86 0.0019 23.2 2.6 27 179-205 29-55 (72)
115 PRK12335 tellurite resistance 22.6 2.5E+02 0.0054 25.9 6.3 61 192-265 134-194 (287)
116 PF03848 TehB: Tellurite resis 22.2 1.3E+02 0.0029 26.6 4.2 63 191-266 43-105 (192)
117 cd01544 PBP1_GalR Ligand-bindi 22.1 5.2E+02 0.011 22.5 8.1 25 50-74 16-40 (270)
118 cd08450 PBP2_HcaR The C-termin 22.1 1.7E+02 0.0038 23.2 4.6 42 219-261 13-55 (196)
119 PF03971 IDH: Monomeric isocit 22.1 1.2E+02 0.0027 31.8 4.3 65 172-238 214-288 (735)
120 cd06312 PBP1_ABC_sugar_binding 22.0 5.3E+02 0.012 22.5 8.4 75 183-263 109-191 (271)
121 cd05466 PBP2_LTTR_substrate Th 21.9 2.1E+02 0.0045 22.1 4.9 43 219-262 13-56 (197)
122 PRK08051 fre FMN reductase; Va 21.7 5.5E+02 0.012 22.5 8.2 61 202-264 130-203 (232)
123 cd06303 PBP1_LuxPQ_Quorum_Sens 21.6 5.6E+02 0.012 22.6 9.5 51 55-109 17-69 (280)
124 cd01483 E1_enzyme_family Super 21.6 3.7E+02 0.0081 21.6 6.5 71 192-265 14-99 (143)
125 cd07044 CofD_YvcK Family of Co 21.5 2.4E+02 0.0053 26.9 6.0 19 90-108 164-182 (309)
126 PRK05282 (alpha)-aspartyl dipe 21.4 3.4E+02 0.0073 24.8 6.7 55 40-108 30-87 (233)
127 smart00828 PKS_MT Methyltransf 21.3 1.5E+02 0.0033 25.7 4.4 15 253-267 65-79 (224)
128 cd06325 PBP1_ABC_uncharacteriz 21.1 5E+02 0.011 22.6 7.8 26 53-78 13-42 (281)
129 PF00175 NAD_binding_1: Oxidor 21.1 3.6E+02 0.0078 20.1 7.4 61 201-263 23-100 (109)
130 cd02989 Phd_like_TxnDC9 Phosdu 21.0 3.1E+02 0.0067 21.5 5.8 50 194-245 15-64 (113)
131 PRK10727 DNA-binding transcrip 21.0 6.1E+02 0.013 23.2 8.6 32 40-71 58-92 (343)
132 COG1646 Predicted phosphate-bi 21.0 1.3E+02 0.0027 27.9 3.8 75 85-164 23-103 (240)
133 TIGR00138 gidB 16S rRNA methyl 21.0 4E+02 0.0086 22.9 6.9 61 194-267 58-120 (181)
134 cd06062 H2MP_MemB-H2up Endopep 20.9 1.6E+02 0.0035 24.3 4.3 46 49-106 13-58 (146)
135 cd00518 H2MP Hydrogenase speci 20.8 1.2E+02 0.0026 24.8 3.4 45 49-106 12-56 (139)
136 PF10672 Methyltrans_SAM: S-ad 20.7 3E+02 0.0066 25.9 6.5 62 193-261 136-201 (286)
137 cd06212 monooxygenase_like The 20.7 4.5E+02 0.0098 22.8 7.3 60 202-263 131-205 (232)
138 cd08445 PBP2_BenM_CatM_CatR Th 20.4 2E+02 0.0044 23.2 4.8 42 219-262 14-57 (203)
139 PF12953 DUF3842: Domain of un 20.4 77 0.0017 26.7 2.1 24 43-66 1-26 (131)
140 cd06277 PBP1_LacI_like_1 Ligan 20.3 5.7E+02 0.012 22.1 9.2 74 190-264 106-186 (268)
141 PRK04457 spermidine synthase; 20.0 3.7E+02 0.008 24.6 6.8 20 243-262 124-143 (262)
No 1
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=6.5e-93 Score=676.80 Aligned_cols=285 Identities=87% Similarity=1.352 Sum_probs=268.9
Q ss_pred ChhHHHHHHhccccceecccCCCCCCCcccccccccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccc
Q 023218 1 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGT 80 (285)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~ 80 (285)
||.|||||.||.|--|++.+..-+.--=-..+|.||++..+++|++|||||||||||+++++||++++++++|+++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~ 80 (372)
T PLN00118 1 MAAQLLRRLLGNRLAQILGASSSSSGAFSSSARAFSSSSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGT 80 (372)
T ss_pred ChHHHHHHHhcccchhhhccccccCCCCcHHHHhhccCCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcH
Confidence 89999999999999999977655433323445778777778999999999999999999999999999999999999999
Q ss_pred eecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCC
Q 023218 81 EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE 160 (285)
Q Consensus 81 ~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnte 160 (285)
+.+..+++.+|+|++++|+++|++||||+++|...+++|++++|||+||||||+||||++||++++++++||||||||||
T Consensus 81 ~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnte 160 (372)
T PLN00118 81 TVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTE 160 (372)
T ss_pred HHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCC
Confidence 99999999999999999999999999999999666678889999999999999999999999999999999999999999
Q ss_pred CccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceee
Q 023218 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 240 (285)
Q Consensus 161 G~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~ 240 (285)
|+|+|.+++..+++++++++|||+++|||+|+||+||++|++|+||++||+|||+.||+||+++|+|++++||||+++|+
T Consensus 161 G~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~ 240 (372)
T PLN00118 161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEV 240 (372)
T ss_pred CcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEee
Confidence 99999998877889999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 241 ~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+||++||+||++|++||||||+|||||||||++|+++||+||+||
T Consensus 241 ~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapS 285 (372)
T PLN00118 241 IIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPS 285 (372)
T ss_pred eHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcc
Confidence 999999999999999999999999999999999999999999998
No 2
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-91 Score=651.13 Aligned_cols=247 Identities=43% Similarity=0.717 Sum_probs=235.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHcC---CCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC-
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTAE---VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~---~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~- 114 (285)
++.|+|+||||||||||||+++++||++++ ++++|+++++|++++..+++++|+|++++|+++||+||||+++|.+
T Consensus 1 ~~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~ 80 (348)
T COG0473 1 MKTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWD 80 (348)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCC
Confidence 357999999999999999999999999997 8999999999999999999999999999999999999999999954
Q ss_pred ---CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC-CCccEEEEccCCCCccccceee-EeCC-eEEEEEeecHHHHHH
Q 023218 115 ---KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY-DDVNLITIRENTEGEYSGLEHQ-VVRG-VVESLKIITRQASLR 188 (285)
Q Consensus 115 ---~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~-~~vD~vIvREnteG~Y~g~~~~-~~~~-~a~~~~~~Tr~~~eR 188 (285)
.++++.+++|||+||||||+||+|++||++++. +++|||||||||||+|+|.+++ ..++ +++++++|||+++||
T Consensus 81 ~~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eR 160 (348)
T COG0473 81 PLPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSER 160 (348)
T ss_pred CCCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHH
Confidence 267789999999999999999999999999877 6899999999999999999884 3344 899999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhH
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDI 268 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDI 268 (285)
|+|+|||+|++|++|+||+|||+|||++||+||+++|+|++++||||+++|+|||+++||||++|++||||||+||||||
T Consensus 161 I~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDI 240 (348)
T COG0473 161 IARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDI 240 (348)
T ss_pred HHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCCcccCCC
Q 023218 269 ISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 269 LSDlaa~l~GglGl~pS 285 (285)
|||+||+|+|||||+||
T Consensus 241 LSD~aa~l~GslGl~PS 257 (348)
T COG0473 241 LSDEAAALTGSLGLAPS 257 (348)
T ss_pred HHhHHHHhcCccccCcc
Confidence 99999999999999998
No 3
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.1e-87 Score=635.01 Aligned_cols=267 Identities=52% Similarity=0.886 Sum_probs=243.8
Q ss_pred hHHHHHHhccccceecccCCCCCCCcccccccccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEecccee
Q 023218 3 TQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEI 82 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~ 82 (285)
..||...|||.... +|+ +...-+.++++++|++|||||||||||+++++||++++++++|+++++|++
T Consensus 3 ~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~- 70 (360)
T PLN00123 3 KRLLSNALGSKAQR-----RSV------TYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD- 70 (360)
T ss_pred hhhhhhhhhhhhcc-----CCc------ccCCcccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-
Confidence 35667777775422 111 111224455679999999999999999999999999999999999999886
Q ss_pred cCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCc
Q 023218 83 DPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGE 162 (285)
Q Consensus 83 ~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~ 162 (285)
++.+|+|++++|+++|++||||+++|.+.+.+++++.|||+||||||+||||++||++++++++||+||||||||+
T Consensus 71 ----~~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~ 146 (360)
T PLN00123 71 ----MKKVPEEVLESIRRNKVCLKGGLATPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGE 146 (360)
T ss_pred ----CccCCHHHHHHHHHCCEEEEccccCCCCcCccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCce
Confidence 4679999999999999999999999976667788999999999999999999999999999999999999999999
Q ss_pred cccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH
Q 023218 163 YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI 242 (285)
Q Consensus 163 Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v 242 (285)
|+|.|++..+++++++++|||+++|||+|+||+||++|+||+||++||+|||+.|++||+++|+|++++||||+++|+||
T Consensus 147 Y~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~V 226 (360)
T PLN00123 147 YSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIV 226 (360)
T ss_pred eccceeecCCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeH
Confidence 99999887778899999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 243 DNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 243 Da~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|++||+||++|++||||||+|||||||||+||+|+||+||+||
T Consensus 227 Da~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pS 269 (360)
T PLN00123 227 DNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPG 269 (360)
T ss_pred HHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccce
Confidence 9999999999999999999999999999999999999999998
No 4
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-87 Score=633.32 Aligned_cols=245 Identities=48% Similarity=0.875 Sum_probs=235.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCch
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~ 120 (285)
+++|+||||||||||||+++++||++++++++|+++++|.+++..+++.+|+|++++|+++|++||||+++|.+++++++
T Consensus 2 ~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~~~ 81 (334)
T PRK08997 2 KQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEGFTSI 81 (334)
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcCccch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999976667888
Q ss_pred hHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeC--CeEEEEEeecHHHHHHHHHHHHHHHH
Q 023218 121 NLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVR--GVVESLKIITRQASLRVAEYAFHYAK 198 (285)
Q Consensus 121 ~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~--~~a~~~~~~Tr~~~eRIar~AFe~A~ 198 (285)
++.|||+||||||+||||++||++++++++|++||||||||+|+|.+++..+ .+++++++|||+++|||+|+||++|+
T Consensus 82 ~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~ 161 (334)
T PRK08997 82 NVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELAR 161 (334)
T ss_pred HHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875433 38999999999999999999999999
Q ss_pred hCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccC
Q 023218 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG 278 (285)
Q Consensus 199 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~G 278 (285)
+|++|+||++||+|||+.|++||+++|+|+|++||+|+++|+|||++||||+++|++||||||+|||||||||++|+++|
T Consensus 162 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~G 241 (334)
T PRK08997 162 KEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVG 241 (334)
T ss_pred hcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 023218 279 GLGLTPR 285 (285)
Q Consensus 279 glGl~pS 285 (285)
|+||+||
T Consensus 242 glGl~ps 248 (334)
T PRK08997 242 GLGMAPG 248 (334)
T ss_pred CCCcCcc
Confidence 9999998
No 5
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-86 Score=629.74 Aligned_cols=246 Identities=32% Similarity=0.535 Sum_probs=232.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc---CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA---EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~---~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~- 115 (285)
++++|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|++++++||++|++||||+++|..+
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 3489999999999999999999999987 899999999999999999999999999999999999999999999432
Q ss_pred --CcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE----eCCeEEEEEeecHHHH
Q 023218 116 --GHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----VRGVVESLKIITRQAS 186 (285)
Q Consensus 116 --~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~----~~~~a~~~~~~Tr~~~ 186 (285)
.+++.+++|||+||||+|+||||++||+++++ +++||+||||||||+|+|.+++. .+++|+++++|||+++
T Consensus 83 ~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~ 162 (344)
T PRK03437 83 GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFGV 162 (344)
T ss_pred CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHHH
Confidence 25677999999999999999999999999886 78999999999999999987543 2357899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 187 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 187 eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
|||+|+||+||++|++|+||++||+|||+.|++||+++|+|+|++||||+++|+|||++|||||++|++||||||+||||
T Consensus 163 ~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 242 (344)
T PRK03437 163 ERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFG 242 (344)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhccCCcccCCC
Q 023218 267 DIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 267 DILSDlaa~l~GglGl~pS 285 (285)
|||||++|+++||+||+||
T Consensus 243 DILSDlaa~l~GglGl~pS 261 (344)
T PRK03437 243 DIITDLAAAVTGGIGLAAS 261 (344)
T ss_pred hhhhHHHHHhcCCccccce
Confidence 9999999999999999998
No 6
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-86 Score=623.41 Aligned_cols=240 Identities=39% Similarity=0.655 Sum_probs=232.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCchh
Q 023218 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN 121 (285)
Q Consensus 42 ~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~ 121 (285)
++|++|||||||||||+++++||++++++++|+++++|.+++..+++.+|+|++++||++|++||||+++|. .+.+
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~----~~~~ 77 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA----ADVI 77 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc----cchH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999883 5679
Q ss_pred HHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhC-
Q 023218 122 LTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTH- 200 (285)
Q Consensus 122 ~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r- 200 (285)
+.|||+||||||+||||++||++++++++|++||||||||+|+|.+++..+++++++++|||+++|||+|+||+||++|
T Consensus 78 ~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~ 157 (330)
T PRK14025 78 VKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRK 157 (330)
T ss_pred HHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887778899999999999999999999999998
Q ss_pred ---CCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhcc
Q 023218 201 ---GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (285)
Q Consensus 201 ---~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~ 277 (285)
++|+||++||+|||+.||+||+++|+|+|++||+|+++|++||++||+||++|++||||||+|||||||||++|+++
T Consensus 158 ~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~ 237 (330)
T PRK14025 158 KMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLV 237 (330)
T ss_pred ccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCC
Q 023218 278 GGLGLTPR 285 (285)
Q Consensus 278 GglGl~pS 285 (285)
||+||+||
T Consensus 238 GglGl~ps 245 (330)
T PRK14025 238 GGLGLAPS 245 (330)
T ss_pred CCCCcccc
Confidence 99999998
No 7
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=3.7e-85 Score=618.65 Aligned_cols=245 Identities=62% Similarity=1.046 Sum_probs=234.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCC-c
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG-H 117 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~-~ 117 (285)
+++++|+||||||||||||+++++||++++++++|+++++|++ ..+++++|+|++++|+++|++||||+++|...+ +
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~~~ 78 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKGGH 78 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccccc
Confidence 3568999999999999999999999999999999999999986 456779999999999999999999999996543 7
Q ss_pred CchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHH
Q 023218 118 RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (285)
Q Consensus 118 ~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A 197 (285)
+|++++|||+||||+|+||||++||++++++++||+||||||||+|+|.+++..+++++++++|||+++|||+|+||+||
T Consensus 79 ~s~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A 158 (333)
T TIGR00175 79 RSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYA 158 (333)
T ss_pred cchhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhcc
Q 023218 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (285)
Q Consensus 198 ~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~ 277 (285)
++|++|+||++||+|||+.||++|+++|+|++++||+|+++|+|||+++|+||++|++||||||+|||||||||++|+++
T Consensus 159 ~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~ 238 (333)
T TIGR00175 159 RKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLV 238 (333)
T ss_pred HhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhc
Confidence 99987889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCC
Q 023218 278 GGLGLTPR 285 (285)
Q Consensus 278 GglGl~pS 285 (285)
|||||+||
T Consensus 239 GslGl~pS 246 (333)
T TIGR00175 239 GGPGLVPG 246 (333)
T ss_pred CCcccCce
Confidence 99999998
No 8
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-85 Score=622.67 Aligned_cols=245 Identities=28% Similarity=0.508 Sum_probs=229.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~ 114 (285)
+.++|+||||||||||||+++++||+++ +++++|+++++|.+.+..+++.+|++++++||++|++||||+++|..
T Consensus 2 ~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~ 81 (352)
T PRK08194 2 KQFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKL 81 (352)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCc
Confidence 4589999999999999999999999986 58999999999999999999999999999999999999999999962
Q ss_pred -CC---cCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE---eCCeEEEEEeecHH
Q 023218 115 -KG---HRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV---VRGVVESLKIITRQ 184 (285)
Q Consensus 115 -~~---~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~---~~~~a~~~~~~Tr~ 184 (285)
++ .++++++|||+||||||+||||++||+++++ +++|||||||||||+|+|.++.. ..++|+++++|||+
T Consensus 82 ~~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~ 161 (352)
T PRK08194 82 VPDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRK 161 (352)
T ss_pred CCCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHH
Confidence 22 2344999999999999999999999999886 68999999999999999987543 23578999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCc
Q 023218 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 185 ~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nl 264 (285)
++|||+|+||++|++| +++||++||+|||+.|++||+++|+|+|++||||+++|+|||++|||||++|++||||||+||
T Consensus 162 ~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nl 240 (352)
T PRK08194 162 GTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASNL 240 (352)
T ss_pred HHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEccc
Confidence 9999999999999998 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhhccCCcccCCC
Q 023218 265 YGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 265 fGDILSDlaa~l~GglGl~pS 285 (285)
|||||||++|+++||+||+||
T Consensus 241 fGDILSDlaa~l~GslGl~pS 261 (352)
T PRK08194 241 FGDILTDIGAAIMGSIGIAPA 261 (352)
T ss_pred hHHHHhHHHHHhcCCccccce
Confidence 999999999999999999998
No 9
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.5e-85 Score=639.07 Aligned_cols=246 Identities=44% Similarity=0.730 Sum_probs=238.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCC-CCcChhhHHHhhhcCeEEECCccCCCCCCcC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~-~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~ 118 (285)
.+++|+||||||||||||+++++||++++++++|+++++|.+.+..++ ..+|++++++|+++|++||||+++|.+++++
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~~~ 82 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGGYK 82 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccCcc
Confidence 458999999999999999999999999999999999999999988875 7999999999999999999999999877788
Q ss_pred chhHHHhhhcCcEEEeEEeccC-CCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHH
Q 023218 119 SLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (285)
Q Consensus 119 s~~~~LRk~ldlyanvRP~~~~-pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A 197 (285)
|++++|||+||||||+|||+++ ||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+||||+||
T Consensus 83 s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A 162 (482)
T PRK09222 83 SLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYA 162 (482)
T ss_pred chHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999887778999999999999999999999999
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhcc
Q 023218 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (285)
Q Consensus 198 ~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~ 277 (285)
++|++|+||++||+|||+.|||||+++|+|+|++||||+++|++||++||+|+++|++||||||+|||||||||++|+++
T Consensus 163 ~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~ 242 (482)
T PRK09222 163 RANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEIS 242 (482)
T ss_pred HhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCC
Q 023218 278 GGLGLTPR 285 (285)
Q Consensus 278 GglGl~pS 285 (285)
||+||+||
T Consensus 243 GslGlapS 250 (482)
T PRK09222 243 GSVGLAGS 250 (482)
T ss_pred CCcccccc
Confidence 99999998
No 10
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=4.6e-85 Score=621.26 Aligned_cols=246 Identities=31% Similarity=0.543 Sum_probs=230.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHc-----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTA-----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~-----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~ 113 (285)
|+.|+|++|||||||||||+++++||+++ +++++|+++++|++.+..+++.+|++++++||++|++||||+++|.
T Consensus 1 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~ 80 (352)
T TIGR02089 1 MKQYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPA 80 (352)
T ss_pred CCceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCC
Confidence 34689999999999999999999999987 4899999999999999999999999999999999999999999995
Q ss_pred CC----CcCchhHHHhhhcCcEEEeEEeccCCCCCCCC-----CCccEEEEccCCCCccccceeeEe----CCeEEEEEe
Q 023218 114 GK----GHRSLNLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKI 180 (285)
Q Consensus 114 ~~----~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~-----~~vD~vIvREnteG~Y~g~~~~~~----~~~a~~~~~ 180 (285)
.. +.++++++|||+||||||+||||++||+++++ +++|||||||||||+|+|.+++.. ++.|+++++
T Consensus 81 ~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~ 160 (352)
T TIGR02089 81 LVPDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAI 160 (352)
T ss_pred CCCCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEE
Confidence 31 33456999999999999999999999998876 689999999999999999875432 357899999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEE
Q 023218 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIV 260 (285)
|||+++|||+|+||+||++| +++||++||+|||+.|++||+++|++++++||+|+++|+|||++|||||++|++|||||
T Consensus 161 ~tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDViv 239 (352)
T TIGR02089 161 FTRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIV 239 (352)
T ss_pred ecHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEE
Confidence 99999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHhhhhhhccCCcccCCC
Q 023218 261 MPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 261 t~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+|||||||||++|+++||+||+||
T Consensus 240 t~NlfGDILSD~aa~l~GglGl~ps 264 (352)
T TIGR02089 240 ASNLFGDILSDLGAALMGSLGVAPS 264 (352)
T ss_pred ecccchhhhhHHHHHhcCCccccce
Confidence 9999999999999999999999998
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.9e-84 Score=632.10 Aligned_cols=243 Identities=44% Similarity=0.735 Sum_probs=235.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCC-CCCcChhhHHHhhhcCeEEECCccCCCCCCcCchh
Q 023218 43 TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRT-QSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN 121 (285)
Q Consensus 43 ~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~-~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~ 121 (285)
+|+||||||||||||+++++||++++++++|+++++|.+.+..+ ++.+|+|++++|+++|++||||+++|.+++++|++
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~~~s~~ 81 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGGHKSLN 81 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccCcccHH
Confidence 69999999999999999999999999999999999999998877 48999999999999999999999999877788999
Q ss_pred HHHhhhcCcEEEeEEeccC-CCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhC
Q 023218 122 LTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTH 200 (285)
Q Consensus 122 ~~LRk~ldlyanvRP~~~~-pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r 200 (285)
++|||+||||||+|||+++ |+++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++|
T Consensus 82 ~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r 161 (473)
T TIGR02924 82 VTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKH 161 (473)
T ss_pred HHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 999988899999999999999999999887778899999999999999999999999999
Q ss_pred CCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCc
Q 023218 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGL 280 (285)
Q Consensus 201 ~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~Ggl 280 (285)
+||+||++||+|||+.|||||+++|+|+|++||+|+++|++||++||+|+++|++||||||+|||||||||++|+++||+
T Consensus 162 ~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~Gsl 241 (473)
T TIGR02924 162 NRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSV 241 (473)
T ss_pred CCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 023218 281 GLTPR 285 (285)
Q Consensus 281 Gl~pS 285 (285)
||+||
T Consensus 242 GlapS 246 (473)
T TIGR02924 242 GLAGS 246 (473)
T ss_pred Ccccc
Confidence 99998
No 12
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=4.5e-84 Score=608.15 Aligned_cols=239 Identities=42% Similarity=0.753 Sum_probs=229.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCchhHH
Q 023218 44 ATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLT 123 (285)
Q Consensus 44 IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~~~ 123 (285)
|++|||||||||||+++++||++.+++++|+++++|.+++..+++.+|++++++|+++|++||||+++|.+.+++|++++
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~~~~ 80 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPGYKSVIVT 80 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCCccChHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999977677899999
Q ss_pred HhhhcCcEEEeEEeccCCCCCCCCC-CccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCC
Q 023218 124 LRKELNLYANVRPCYSLPGYKTRYD-DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGR 202 (285)
Q Consensus 124 LRk~ldlyanvRP~~~~pg~~~~~~-~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~ 202 (285)
|||+||||+|+||||++||++++++ ++|++||||||||+|+|.++. .+++++++++|||+++|||+|+||+||++|++
T Consensus 81 LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~ 159 (322)
T TIGR02088 81 LRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKERNR 159 (322)
T ss_pred HHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998876 899999999999999999864 35689999999999999999999999999864
Q ss_pred CcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCccc
Q 023218 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGL 282 (285)
Q Consensus 203 ~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl 282 (285)
+||++||+|||+.|+|||+++|+|++++|| |+++|++||++||+||++|++||||||+|||||||||++|+++||+||
T Consensus 160 -~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl 237 (322)
T TIGR02088 160 -KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGL 237 (322)
T ss_pred -cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCC
Confidence 599999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 023218 283 TPR 285 (285)
Q Consensus 283 ~pS 285 (285)
+||
T Consensus 238 ~pS 240 (322)
T TIGR02088 238 APS 240 (322)
T ss_pred Cce
Confidence 998
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=9.2e-84 Score=619.24 Aligned_cols=244 Identities=28% Similarity=0.481 Sum_probs=226.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~ 115 (285)
+.|+|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|++++++|+++|++||||+++|..+
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4689999999999999999999999976 589999999999999999999999999999999999999999999532
Q ss_pred -Cc-----CchhHHHhhhcCcEEEeEEeccCCCCCC--CC-----CCccEEEEccCCCCccccceeeE-----eCCeEEE
Q 023218 116 -GH-----RSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQV-----VRGVVES 177 (285)
Q Consensus 116 -~~-----~s~~~~LRk~ldlyanvRP~~~~pg~~~--~~-----~~vD~vIvREnteG~Y~g~~~~~-----~~~~a~~ 177 (285)
.. .+++++|||+||||||+||||++||+++ +. +++|||||||||||+|+|.++.. .++++++
T Consensus 125 ~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~ 204 (409)
T PLN02329 125 KNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVS 204 (409)
T ss_pred CCcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEE
Confidence 11 2569999999999999999999999875 33 68999999999999999987432 2458999
Q ss_pred EEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCcc
Q 023218 178 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD 257 (285)
Q Consensus 178 ~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD 257 (285)
+++|||+++|||+|+||+||++|+ ++||++||+|||+ +++||+++|+++|++||||+++|+|||++|||||++|++||
T Consensus 205 ~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FD 282 (409)
T PLN02329 205 TEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFD 282 (409)
T ss_pred eEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCC
Confidence 999999999999999999999985 6999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 258 VLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 258 VIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
||||+|||||||||++|+|+|||||+||
T Consensus 283 VIVt~NLfGDILSDlaa~l~GglGlaPS 310 (409)
T PLN02329 283 TIVTNNIFGDILSDEASMITGSIGMLPS 310 (409)
T ss_pred EEEEcCcccccccHHHHHhcCCcccCce
Confidence 9999999999999999999999999998
No 14
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-85 Score=597.11 Aligned_cols=253 Identities=67% Similarity=1.138 Sum_probs=244.6
Q ss_pred ccccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCC
Q 023218 33 RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 33 ~~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p 112 (285)
+++.+..++++|++||||||||||++++++|++++.++++|++++.+......+...+|||++++++++++.||||+.+|
T Consensus 27 ~~~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tP 106 (365)
T KOG0785|consen 27 RAFNSATKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATP 106 (365)
T ss_pred ccccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCc
Confidence 44555556799999999999999999999999999999999999998776667888999999999999999999999999
Q ss_pred CCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHH
Q 023218 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEY 192 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~ 192 (285)
.+++++|+|++|||+|+||||||||++++|..++|+++|+|+|||||||+|+|+||+..+|+++++++||+.+++||++|
T Consensus 107 i~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~~ 186 (365)
T KOG0785|consen 107 IGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAEY 186 (365)
T ss_pred cccccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDL 272 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDl 272 (285)
||+||++++|++||++||+|||+.|||||+++|+|++++||||+++++|+|+||++|+++|..|||+|+||||||||||+
T Consensus 187 AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~ 266 (365)
T KOG0785|consen 187 AFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDL 266 (365)
T ss_pred HHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcccCCC
Q 023218 273 CAGLIGGLGLTPR 285 (285)
Q Consensus 273 aa~l~GglGl~pS 285 (285)
||+|+||||+.||
T Consensus 267 ~agLvGgLGltPS 279 (365)
T KOG0785|consen 267 CAGLVGGLGLTPS 279 (365)
T ss_pred HHHhccCcccCCC
Confidence 9999999999998
No 15
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=7.2e-83 Score=605.66 Aligned_cols=241 Identities=33% Similarity=0.557 Sum_probs=224.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-Cc
Q 023218 43 TATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK-GH 117 (285)
Q Consensus 43 ~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~-~~ 117 (285)
+|++|||||||||||+++++||+++ +++++|+++++|.+.+..+++.+|++++++||++|++||||+++|..+ ..
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5999999999999999999999977 689999999999999999999999999999999999999999999532 11
Q ss_pred -----CchhHHHhhhcCcEEEeEEeccCCCCCC--CC-----CCccEEEEccCCCCccccceeeEe----CCeEEEEEee
Q 023218 118 -----RSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKII 181 (285)
Q Consensus 118 -----~s~~~~LRk~ldlyanvRP~~~~pg~~~--~~-----~~vD~vIvREnteG~Y~g~~~~~~----~~~a~~~~~~ 181 (285)
.+.+++|||+||||||+||||++||+++ +. +++|+|||||||||+|+|.+++.. +++++++++|
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~~ 160 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEVY 160 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEEe
Confidence 2239999999999999999999999875 43 689999999999999999976332 3689999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEe
Q 023218 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt 261 (285)
||+++|||+|+||+||++|+ ++||++||+|||+ ++++|+++|+|++++||||+++|++||++||+||++|++||||||
T Consensus 161 Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv~ 238 (349)
T TIGR00169 161 TKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVVT 238 (349)
T ss_pred eHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEEE
Confidence 99999999999999999985 4999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhhhhhhccCCcccCCC
Q 023218 262 PNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 262 ~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|||||||||++|+++||+||+||
T Consensus 239 ~NlfGDILSDlaa~l~GglGlapS 262 (349)
T TIGR00169 239 GNIFGDILSDEASVIPGSLGMLPS 262 (349)
T ss_pred cCcccchhhHHHHHhcCCCCCCce
Confidence 999999999999999999999998
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-82 Score=601.42 Aligned_cols=242 Identities=35% Similarity=0.561 Sum_probs=226.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~- 115 (285)
+++|+||||||||||||+++++||+++ +++++|+++++|.+++..+++.+|+|++++||++|++||||+++|..+
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 389999999999999999999999977 689999999999999999999999999999999999999999999531
Q ss_pred ------CcCchhHHHhhhcCcEEEeEEeccCCCCCC--CC-----CCccEEEEccCCCCccccceeeEe----CCeEEEE
Q 023218 116 ------GHRSLNLTLRKELNLYANVRPCYSLPGYKT--RY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESL 178 (285)
Q Consensus 116 ------~~~s~~~~LRk~ldlyanvRP~~~~pg~~~--~~-----~~vD~vIvREnteG~Y~g~~~~~~----~~~a~~~ 178 (285)
++++ +++|||+||||+|+||||++||+++ ++ +++|+|||||||||+|+|.+++.. +++++++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 160 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFDT 160 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEEE
Confidence 3456 9999999999999999999999986 44 389999999999999999976542 3578999
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccE
Q 023218 179 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258 (285)
Q Consensus 179 ~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDV 258 (285)
++|||+++|||+|+||+||++| +++||++||+|||+ ++++|+++|+|++++||+|+++|++||++||+||++|++|||
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fDV 238 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFDV 238 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCeE
Confidence 9999999999999999999998 46999999999999 899999999999999999999999999999999999999999
Q ss_pred EEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 259 LVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 259 IVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|||+|||||||||++|+++||+||+||
T Consensus 239 iv~~NlfGDIlSDlaa~l~GglGl~ps 265 (358)
T PRK00772 239 IVTENLFGDILSDEAAMLTGSLGMLPS 265 (358)
T ss_pred EeecCcccccccHHHHHhcCCCCCCcc
Confidence 999999999999999999999999998
No 17
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.7e-82 Score=610.18 Aligned_cols=245 Identities=35% Similarity=0.627 Sum_probs=229.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc---C----CCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~---~----~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p 112 (285)
+++ |+||||||||||||+++++||+++ + ++++|+++++|.+++..+++++|+|++++|+++|++||||+++|
T Consensus 23 ~~~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP 101 (412)
T PRK06451 23 KPI-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETP 101 (412)
T ss_pred CcE-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCC
Confidence 445 999999999999999999999975 2 48999999999999999999999999999999999999999999
Q ss_pred CCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE-------------------
Q 023218 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV------------------- 170 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~------------------- 170 (285)
.+++++|++++|||+||||||+||||++||+++++ +++|||||||||||+|+|.++..
T Consensus 102 ~~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (412)
T PRK06451 102 IGKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGVE 181 (412)
T ss_pred CCcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeeccccccccccccccccccccccccc
Confidence 76678899999999999999999999999999887 78999999999999999997420
Q ss_pred -eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC--------------
Q 023218 171 -VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE-------------- 234 (285)
Q Consensus 171 -~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd-------------- 234 (285)
..+.++++++||+.++|||+|+||+||++|++|+||+|||+|||+.|+++|+++|+|+++ +|||
T Consensus 182 ~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~~ 261 (412)
T PRK06451 182 VEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYNG 261 (412)
T ss_pred cccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhcccc
Confidence 124678999999999999999999999999888999999999999999999999999997 8995
Q ss_pred ------ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ------V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||++|||||++|++||||||+|||||||||++|+++||+||+||
T Consensus 262 ~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pS 318 (412)
T PRK06451 262 VPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGG 318 (412)
T ss_pred ccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcce
Confidence 999999999999999999999999999999999999999999999999998
No 18
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-81 Score=606.31 Aligned_cols=245 Identities=34% Similarity=0.620 Sum_probs=228.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc---C----CCeEEEEEeccceecCCCCC--CcChhhHHHhhhcCeEEECCcc
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~---~----~~ie~~~~~~G~~~~~~~~~--~lp~e~~~~ik~~daiL~Gav~ 110 (285)
.++ |++|||||||||||+++++||+++ + ++++|+++++|++++..+++ .+|+|++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 445 999999999999999999999975 2 48999999999999999999 9999999999999999999999
Q ss_pred CCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE-----------------
Q 023218 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----------------- 170 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~----------------- 170 (285)
+|.+.+++|+++.|||+||||||+||||++||+++++ +++|||||||||||+|+|.++..
T Consensus 98 tp~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~ 177 (409)
T PRK07006 98 TPVGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMG 177 (409)
T ss_pred CCCCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccC
Confidence 9976667889999999999999999999999999886 68999999999999999987320
Q ss_pred ------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hC-----------
Q 023218 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY----------- 232 (285)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y----------- 232 (285)
..+.|+++++|||+++|||+|+||+||++|++|+||++||+|||+.|||||++++.|+|+ +|
T Consensus 178 ~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~ 257 (409)
T PRK07006 178 VKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWD 257 (409)
T ss_pred cccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 124578999999999999999999999999888999999999999999999998889998 68
Q ss_pred --------CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 233 --------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 233 --------pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 258 ~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapS 318 (409)
T PRK07006 258 KIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPG 318 (409)
T ss_pred ccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhccc
Confidence 89999999999999999999999999999999999999999999999999998
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.2e-80 Score=602.09 Aligned_cols=245 Identities=33% Similarity=0.589 Sum_probs=228.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcC-------CCeEEEEEeccceecCCCC--CCcChhhHHHhhhcCeEEECCcc
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAE-------VPVEWEEHYVGTEIDPRTQ--SFLTWESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~-------~~ie~~~~~~G~~~~~~~~--~~lp~e~~~~ik~~daiL~Gav~ 110 (285)
.++ |+||||||||||||+++++||+++. ++++|+++++|++++..++ +++|+|++++|+++|++||||++
T Consensus 26 ~~~-I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~ 104 (416)
T TIGR00183 26 NPI-IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLT 104 (416)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECccc
Confidence 335 9999999999999999999999763 4899999999999999998 99999999999999999999999
Q ss_pred CCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE-----------------
Q 023218 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----------------- 170 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~----------------- 170 (285)
+|.+.+++|+++.||++||||||+||||++||+++++ +++||+||||||||+|+|.++..
T Consensus 105 tp~~~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g 184 (416)
T TIGR00183 105 TPVGGGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELG 184 (416)
T ss_pred CCCCccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccC
Confidence 9976667889999999999999999999999999886 68999999999999999987320
Q ss_pred ------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hC-----------
Q 023218 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY----------- 232 (285)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y----------- 232 (285)
.++.++++++||+++++||+|+||++|++|++++||++||+|||+.|||+|+++|.|+++ +|
T Consensus 185 ~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~ 264 (416)
T TIGR00183 185 VKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWD 264 (416)
T ss_pred ccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccc
Confidence 134678999999999999999999999999778999999999999999999999999999 57
Q ss_pred --------CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 233 --------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 233 --------pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|||+++|++||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 265 ~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapS 325 (416)
T TIGR00183 265 KYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPG 325 (416)
T ss_pred cccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcce
Confidence 49999999999999999999999999999999999999999999999999998
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-79 Score=593.60 Aligned_cols=245 Identities=33% Similarity=0.578 Sum_probs=225.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc---C----CCeEEEEEeccceecCCCCC--CcChhhHHHhhhcCeEEECCcc
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA---E----VPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~---~----~~ie~~~~~~G~~~~~~~~~--~lp~e~~~~ik~~daiL~Gav~ 110 (285)
.++ |++|||||||||||+++++||+++ . .+++|.++.+|++++..+++ .+|+|++++|+++|++||||++
T Consensus 28 ~~~-I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~ 106 (474)
T PRK07362 28 NPI-IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLT 106 (474)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECccc
Confidence 335 999999999999999999999975 1 48999999999999988885 8999999999999999999999
Q ss_pred CCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE-----------------
Q 023218 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----------------- 170 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~----------------- 170 (285)
+|.+++.+|.+++|||.||||+|+||||++||+++++ +++|+|||||||||+|+|.+++.
T Consensus 107 tP~~~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~ 186 (474)
T PRK07362 107 TPIGGGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVI 186 (474)
T ss_pred CCCCcCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhcccccccccc
Confidence 9987778899999999999999999999999999987 68999999999999999987431
Q ss_pred -----------eCCeEEEEEeecHHHHHHHHHHHHHHHHhC--CCCcEEEEEcCCccccccHHHHHHHHHHHH-h-----
Q 023218 171 -----------VRGVVESLKIITRQASLRVAEYAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAE-K----- 231 (285)
Q Consensus 171 -----------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r--~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~----- 231 (285)
..+.|+++++|||++++||+|+||+||++| ++++||+|||+|||++|+|+|++++.|+|+ +
T Consensus 187 ~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~ 266 (474)
T PRK07362 187 PASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDEC 266 (474)
T ss_pred cccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhh
Confidence 123678999999999999999999999998 468899999999999999999998889986 3
Q ss_pred --------------CCC------------------------------------------------ccceeeeHHHHHHHH
Q 023218 232 --------------YPE------------------------------------------------ITYEEVVIDNCCMML 249 (285)
Q Consensus 232 --------------ypd------------------------------------------------V~~~~~~vDa~~~~L 249 (285)
||+ |+++|++||++||||
T Consensus 267 v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~l 346 (474)
T PRK07362 267 VTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQI 346 (474)
T ss_pred hhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHH
Confidence 454 777999999999999
Q ss_pred HhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 250 VKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 250 v~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+++|++||||||+|||||||||++|+|+|||||+||
T Consensus 347 v~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPS 382 (474)
T PRK07362 347 QTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPG 382 (474)
T ss_pred HhChhhCCEEEEccccchhhhHHHHHhcCCccccce
Confidence 999999999999999999999999999999999998
No 21
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=9.9e-80 Score=585.97 Aligned_cols=242 Identities=48% Similarity=0.814 Sum_probs=226.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHHHcC----CCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcC
Q 023218 43 TATLFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (285)
Q Consensus 43 ~IavipGDGIGpEV~~aa~~VL~a~~----~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~ 118 (285)
||++|||||||||||+++++||+++. ++++|+++++|.+++..+++.+|+|++++|+++|++||||+++|.+.+.+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 79999999999999999999999985 88999999999999999999999999999999999999999999865544
Q ss_pred c--hhHHHhhhcCcEEEeEEeccC--CCCCCCCC-----CccEEEEccCCCCccccceeeEeCC-----eEEEEEeecHH
Q 023218 119 S--LNLTLRKELNLYANVRPCYSL--PGYKTRYD-----DVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQ 184 (285)
Q Consensus 119 s--~~~~LRk~ldlyanvRP~~~~--pg~~~~~~-----~vD~vIvREnteG~Y~g~~~~~~~~-----~a~~~~~~Tr~ 184 (285)
+ ++++|||.||||+|+||||++ ++.+++.+ ++|++||||||||+|+|.+++..++ +++++++|||+
T Consensus 81 ~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~~ 160 (348)
T PF00180_consen 81 SENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITRE 160 (348)
T ss_dssp HHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEHH
T ss_pred cHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeeccccc
Confidence 4 458999999999999999999 46666654 5999999999999999999887654 89999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCCccceeeeHHHHHHHHHhCCCCccEEEeCC
Q 023218 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 185 ~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~N 263 (285)
++|||+|+||++|++|++|+||++||+|+|+.++ +|+++|+|+++ +||+|+++|++||+++|+||++|++||||||+|
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~N 239 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTPN 239 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEEH
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeecc
Confidence 9999999999999999999999999999999888 99999999999 999999999999999999999999999999999
Q ss_pred chhhHHhhhhhhccCCcccCCC
Q 023218 264 LYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 264 lfGDILSDlaa~l~GglGl~pS 285 (285)
||||||||++++++||+||+||
T Consensus 240 l~GDIlSDl~a~l~G~lGl~ps 261 (348)
T PF00180_consen 240 LFGDILSDLAAGLVGGLGLAPS 261 (348)
T ss_dssp HHHHHHHHHHHHHHTSGGGEEE
T ss_pred hhHHHHHHHhhhcCCChhhhhh
Confidence 9999999999999999999997
No 22
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-76 Score=546.88 Aligned_cols=248 Identities=58% Similarity=0.931 Sum_probs=235.2
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC-C
Q 023218 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI-G 114 (285)
Q Consensus 36 s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~-~ 114 (285)
++|+++++|++|||||||||++.++.+|++++++|++|+++++++.. ...+..++|.++++++++++|||.+.+|. +
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~--~~~~~~~~e~v~Si~rNkValkG~i~t~~~~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSN--KESSEDLDEAVESIKRNKVALKGNIETPDLP 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCc--cccchhHHHHHHHHHhcceeEeecccCCCCc
Confidence 56889999999999999999999999999999999999999998722 22233467888999999999999999994 3
Q ss_pred CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHH
Q 023218 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (285)
Q Consensus 115 ~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AF 194 (285)
++..|.+++||++||||||+-.|+++||++++++++|++||||||||+|+|.||+..+|+.++++++|++.+|||+||||
T Consensus 115 g~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF 194 (375)
T KOG0784|consen 115 GGAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSERIARYAF 194 (375)
T ss_pred cchhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhh
Q 023218 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCA 274 (285)
Q Consensus 195 e~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa 274 (285)
|||.+.||||||+|||||+||.+||||+++|+||++.||+|+++.|+||++|||||.+|++|||+|+|||||.|||.+||
T Consensus 195 ~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaa 274 (375)
T KOG0784|consen 195 EYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAA 274 (375)
T ss_pred HHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccCCC
Q 023218 275 GLIGGLGLTPR 285 (285)
Q Consensus 275 ~l~GglGl~pS 285 (285)
+|+||.|+.|.
T Consensus 275 GlvGG~Glv~G 285 (375)
T KOG0784|consen 275 GLVGGAGLVSG 285 (375)
T ss_pred HhcCCCCcccc
Confidence 99999999884
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-72 Score=541.50 Aligned_cols=238 Identities=24% Similarity=0.290 Sum_probs=218.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC----C-
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG----K- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~----~- 115 (285)
+.+|++||||||||||+++++.+|.++.++++|+++++|.+++..+++.+|+|++++||++|++||||+++|.. +
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~ 86 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEF 86 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999952 1
Q ss_pred ----CcCchhHHHhhhcCcEEEeEEe--cc----CCCCCCCCCCccEEEEccCCCCccccceeeE------------eCC
Q 023218 116 ----GHRSLNLTLRKELNLYANVRPC--YS----LPGYKTRYDDVNLITIRENTEGEYSGLEHQV------------VRG 173 (285)
Q Consensus 116 ----~~~s~~~~LRk~ldlyanvRP~--~~----~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~------------~~~ 173 (285)
.++|++++|||+||||+|+||| ++ +||+++ +|+||||||||+|+|.++.. .++
T Consensus 87 ~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 87 NLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred CccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 3679999999999999999998 76 677643 59999999999999998764 122
Q ss_pred ------------eEEEEEe-ecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCC------
Q 023218 174 ------------VVESLKI-ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP------ 233 (285)
Q Consensus 174 ------------~a~~~~~-~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~yp------ 233 (285)
.++++++ +||+++|||+|+||+||++|+ ++||++||+|||+.+||||+++|+|+|+ +||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 1334555 999999999999999999985 5699999999999999999999999995 899
Q ss_pred CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 234 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 234 dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
||+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apS 291 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTS 291 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccc
Confidence 59999999999999999999999 9999999999999999999999999998
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1e-71 Score=536.02 Aligned_cols=240 Identities=26% Similarity=0.299 Sum_probs=220.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-----
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK----- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~----- 115 (285)
..++++|+|||||+|++++++++|.+..++++|+++++|.+++..+++.+|+|++++||++|++||||+++|...
T Consensus 9 ~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~ 88 (410)
T PLN00103 9 ANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (410)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999532
Q ss_pred C----cCchhHHHhhhcCcEEEeEE--eccCC----CCCCCC---------------------CCccEEEEccCCCCccc
Q 023218 116 G----HRSLNLTLRKELNLYANVRP--CYSLP----GYKTRY---------------------DDVNLITIRENTEGEYS 164 (285)
Q Consensus 116 ~----~~s~~~~LRk~ldlyanvRP--~~~~p----g~~~~~---------------------~~vD~vIvREnteG~Y~ 164 (285)
+ ++|++++|||.||||+|+|| ||++| |+++++ +++|+|||||||||+|
T Consensus 89 ~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 89 GLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred CccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 2 67999999999999999999 99988 877654 6789999999999999
Q ss_pred cceeeEe---CCeEEEEEee-cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-----hCC--
Q 023218 165 GLEHQVV---RGVVESLKII-TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-----KYP-- 233 (285)
Q Consensus 165 g~~~~~~---~~~a~~~~~~-Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-----~yp-- 233 (285)
+++.. ...+++++++ |++++|||+|+||++|++|+ ++||++||+|||+.+||+|+++|+|+++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 23321 1245567887 99999999999999999985 5699999999999999999999999996 799
Q ss_pred CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 234 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 234 dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|+++|++||++||+||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapS 295 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTS 295 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhc
Confidence 89999999999999999999999 9999999999999999999999999998
No 25
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=5.4e-67 Score=502.72 Aligned_cols=242 Identities=24% Similarity=0.288 Sum_probs=220.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-----
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK----- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~----- 115 (285)
..+++.+.||.+-.-++...++-|-...++++|+++++|.+.+..+++.+|+|++++||++|++||||++||...
T Consensus 6 ~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~ 85 (409)
T TIGR00127 6 ANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEF 85 (409)
T ss_pred cCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 468899999988887777665555556889999999999999999999999999999999999999999999753
Q ss_pred ----CcCchhHHHhhhcCcEEEeEE------eccCCCCCCC-----------CCCccEEEEccCC-CCccccceeeE---
Q 023218 116 ----GHRSLNLTLRKELNLYANVRP------CYSLPGYKTR-----------YDDVNLITIRENT-EGEYSGLEHQV--- 170 (285)
Q Consensus 116 ----~~~s~~~~LRk~ldlyanvRP------~~~~pg~~~~-----------~~~vD~vIvREnt-eG~Y~g~~~~~--- 170 (285)
+++|+|++||+.||||||+|| ++++||+.++ ++++|++|+|||| ||+|+|.++..
T Consensus 86 ~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~ 165 (409)
T TIGR00127 86 KLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVT 165 (409)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccc
Confidence 348999999999999999999 8888998754 7899999999999 99999998632
Q ss_pred ---e-----CCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCC------Cc
Q 023218 171 ---V-----RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYP------EI 235 (285)
Q Consensus 171 ---~-----~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------dV 235 (285)
. ++++++. ++|++++|||+|+||+||++|+ ++||++||+|||+.+||+|+++|+|++ ++|| +|
T Consensus 166 ~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I 243 (409)
T TIGR00127 166 LKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGI 243 (409)
T ss_pred eeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCE
Confidence 1 3677766 8999999999999999999985 679999999999999999999999997 7999 89
Q ss_pred cceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 236 TYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 236 ~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 244 ~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pS 292 (409)
T TIGR00127 244 WYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTS 292 (409)
T ss_pred EEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhhe
Confidence 999999999999999999999 9999999999999999999999999998
No 26
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.1e-66 Score=501.25 Aligned_cols=239 Identities=26% Similarity=0.273 Sum_probs=218.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-----
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK----- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~----- 115 (285)
+.+|++|+|||||+|||+.++++|...+++++|+++++|.++++.+++.+|+|+++++|++|++||||++||...
T Consensus 77 ~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 77 QNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ----CcCchhHHHhhhcCcEEEeEEe------ccCCCCCCC-----------CCCccEEEE----------ccCCCCccc
Q 023218 116 ----GHRSLNLTLRKELNLYANVRPC------YSLPGYKTR-----------YDDVNLITI----------RENTEGEYS 164 (285)
Q Consensus 116 ----~~~s~~~~LRk~ldlyanvRP~------~~~pg~~~~-----------~~~vD~vIv----------REnteG~Y~ 164 (285)
.|+|+|++||+.||+|+|+||| +++||...+ ++++|++|+ ||||||
T Consensus 157 ~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~--- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA--- 233 (483)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC---
Confidence 4589999999999999999999 777776543 577888888 888886
Q ss_pred cceee----EeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-----hCC--
Q 023218 165 GLEHQ----VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-----KYP-- 233 (285)
Q Consensus 165 g~~~~----~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-----~yp-- 233 (285)
+.+++ ..++++.+. ++|+++++||+|+||+||++| +++||++||+||||.+||+|+++|+|+++ +||
T Consensus 234 ~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~ 311 (483)
T PLN03065 234 PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEH 311 (483)
T ss_pred cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCC
Confidence 45543 235778774 899999999999999999998 45799999999999999999999999994 599
Q ss_pred CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 234 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 234 dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 312 ~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pS 362 (483)
T PLN03065 312 SIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTS 362 (483)
T ss_pred CceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhccc
Confidence 69999999999999999999999 9999999999999999999999999998
No 27
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-65 Score=493.84 Aligned_cols=243 Identities=24% Similarity=0.298 Sum_probs=218.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC---C
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK---G 116 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~---~ 116 (285)
-+.+++.|.||.+-.-+++-.++-|-...++++|+++++|.+.+..+++.+|+|++++||++|++||||++||.++ +
T Consensus 8 ~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~ 87 (413)
T PTZ00435 8 VKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKE 87 (413)
T ss_pred ccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccccccc
Confidence 4578999999987777777665555555789999999999999999999999999999999999999999999762 2
Q ss_pred ------cCchhHHHhhhcCcEEEeEEe------ccCCCCCCC-----------CCCccEEEEccCC-CCccccc-eee--
Q 023218 117 ------HRSLNLTLRKELNLYANVRPC------YSLPGYKTR-----------YDDVNLITIRENT-EGEYSGL-EHQ-- 169 (285)
Q Consensus 117 ------~~s~~~~LRk~ldlyanvRP~------~~~pg~~~~-----------~~~vD~vIvREnt-eG~Y~g~-~~~-- 169 (285)
++|+|++||+.||||||+||| +++||++++ ++++|++|+|||| ||+|++. +++
T Consensus 88 ~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~ 167 (413)
T PTZ00435 88 FNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQ 167 (413)
T ss_pred cccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcce
Confidence 689999999999999999998 556777554 6889999999999 9999998 433
Q ss_pred -------EeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCC------Cc
Q 023218 170 -------VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP------EI 235 (285)
Q Consensus 170 -------~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~yp------dV 235 (285)
..++++... ++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+|+++ +|| +|
T Consensus 168 ~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I 245 (413)
T PTZ00435 168 RVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRK-MPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGL 245 (413)
T ss_pred eeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCE
Confidence 235666655 9999999999999999999985 4799999999999999999999999996 699 99
Q ss_pred cceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 236 TYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 236 ~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 246 ~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapS 294 (413)
T PTZ00435 246 WYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 294 (413)
T ss_pred EEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCccccccc
Confidence 999999999999999999999 9999999999999999999999999998
No 28
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-64 Score=453.95 Aligned_cols=245 Identities=29% Similarity=0.467 Sum_probs=224.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~ 115 (285)
.+|+|+++|||||||||+..+++||+++ +++|+|++.++|+++.+..+-++|+|++++.|++|++|+|+++.|.++
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 4699999999999999999999999998 478999999999999999999999999999999999999999999874
Q ss_pred C----cCchhHHHhhhcCcEEEeEEeccCCCCC--CC-----CCCccEEEEccCCCCccccceeeE-eCCeEEEEEeecH
Q 023218 116 G----HRSLNLTLRKELNLYANVRPCYSLPGYK--TR-----YDDVNLITIRENTEGEYSGLEHQV-VRGVVESLKIITR 183 (285)
Q Consensus 116 ~----~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~-----~~~vD~vIvREnteG~Y~g~~~~~-~~~~a~~~~~~Tr 183 (285)
. ....+++||+.|.+|||+|||..+|.+. |+ .+++|++||||+|+|+|+|...+. .+++++++.+|+-
T Consensus 83 ~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya~ 162 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYAA 162 (363)
T ss_pred cCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccccccH
Confidence 2 1245899999999999999999988763 22 378999999999999999986543 3579999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CCcEEEEEcCCccccccHHHHHHHHH-HHHhCCCccceeeeHHHHHHHHHhCCCCcc-EEE
Q 023218 184 QASLRVAEYAFHYAKTHG-RERVSAIHKANIMQKTDGLFLKCCRE-VAEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLV 260 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~-~~~Vt~v~KaNvl~~t~glf~~~~~e-va~~ypdV~~~~~~vDa~~~~Lv~~P~~fD-VIV 260 (285)
.++.||+|.||++|++|+ ..++|++||+|||. ++.|||+++.+ ++.|||++++.|+|||+++|+||++|.+|| +||
T Consensus 163 ~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~iv 241 (363)
T KOG0786|consen 163 HEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTIV 241 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceEE
Confidence 999999999999999873 36899999999997 77999999885 677999999999999999999999999999 999
Q ss_pred eCCchhhHHhhhhhhccCCcccCCC
Q 023218 261 MPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 261 t~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|.|+|||||||.|+.+.||+||+||
T Consensus 242 T~NiFGDIiSDEASvIpGSlGlLPS 266 (363)
T KOG0786|consen 242 TNNIFGDIISDEASVIPGSLGLLPS 266 (363)
T ss_pred eccchhhhhccccccccCccccccc
Confidence 9999999999999999999999998
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.1e-61 Score=452.07 Aligned_cols=245 Identities=37% Similarity=0.612 Sum_probs=230.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHc----C---CCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTA----E---VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~----~---~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~ 113 (285)
+..|.++.|||||+||++++.+|++++ . .+++|.++++|.++++.+++.+|.|+++++|++.+.+|||++||.
T Consensus 18 ~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPv 97 (407)
T COG0538 18 KPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPV 97 (407)
T ss_pred CcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcc
Confidence 467899999999999999999999986 2 789999999999999999999999999999999999999999999
Q ss_pred CCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE--------------------
Q 023218 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV-------------------- 170 (285)
Q Consensus 114 ~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~-------------------- 170 (285)
+++++|+|.+||+.||||+|+|||+.+||+|++.+ .+|+||+|||||+.|.|.|+..
T Consensus 98 g~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~~ 177 (407)
T COG0538 98 GKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVKK 177 (407)
T ss_pred cccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccce
Confidence 99999999999999999999999999999998764 5999999999999999998642
Q ss_pred ---eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC---------------
Q 023218 171 ---VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--------------- 232 (285)
Q Consensus 171 ---~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y--------------- 232 (285)
+++..+.++.|+++++.|++|.||+||.+++|+.||++||.||||.|+|-|++++.|||+++
T Consensus 178 i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~~ 257 (407)
T COG0538 178 IRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFEL 257 (407)
T ss_pred EecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhhc
Confidence 12456789999999999999999999999988999999999999999999999999999752
Q ss_pred CC----ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 233 PE----ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 233 pd----V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
.+ |.++|+++|+|.+|++++|+.||||.|.||.||++||.+|+.+|||||+||
T Consensus 258 ~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pg 314 (407)
T COG0538 258 KGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPG 314 (407)
T ss_pred cCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCcccccc
Confidence 24 999999999999999999999999999999999999999999999999997
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2e-48 Score=370.79 Aligned_cols=236 Identities=17% Similarity=0.169 Sum_probs=204.8
Q ss_pred EEEcCCCccHHHHHHHHHHHHHcCCCeE-EEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC---------
Q 023218 45 TLFPGDGIGPEIAESVKQVFRTAEVPVE-WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG--------- 114 (285)
Q Consensus 45 avipGDGIGpEV~~aa~~VL~a~~~~ie-~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~--------- 114 (285)
+.+.||.+-+-+|+..++-|-...++++ |+++|+|.++.+.|++.++-|+.++++++.+++|+|+.||..
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 4678998888888887777777788996 999999999999999999999999999999999999999975
Q ss_pred CCcCchhHHHhhhcCc-EEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEe----------------------
Q 023218 115 KGHRSLNLTLRKELNL-YANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVV---------------------- 171 (285)
Q Consensus 115 ~~~~s~~~~LRk~ldl-yanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~---------------------- 171 (285)
..|+|||.+||+.||. .+..+|+. +++++..+ .-.++|-|+.-+|.|.. +....
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~-~~~i~~~w-~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~ 158 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIH-IDGVELGY-KKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDD 158 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEe-cCCCCCCc-cCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEE
Confidence 3688999999999999 88888864 45554222 36788999999999976 42210
Q ss_pred ---C-C-eEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhC-----------CC
Q 023218 172 ---R-G-VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKY-----------PE 234 (285)
Q Consensus 172 ---~-~-~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~y-----------pd 234 (285)
. + -..-.+..|.+.++||+|+||+||++|+ ++||++||+||||++++||+ +|+|++ ++| |+
T Consensus 159 ~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 159 RTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 1 1 1123588999999999999999999985 56999999999999999998 999997 777 77
Q ss_pred ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|++||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pS 287 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITS 287 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccc
Confidence 999999999999999999999999999999999999999999999999998
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=5.8e-30 Score=235.74 Aligned_cols=246 Identities=25% Similarity=0.281 Sum_probs=211.5
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC-
Q 023218 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (285)
Q Consensus 36 s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~- 114 (285)
++-.-..+|+-+.||.+-+-||...++-|-...+++++.++++|-++.+.+++.++-|+.++++++++.+|||+.||+.
T Consensus 13 ~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEa 92 (422)
T KOG1526|consen 13 SKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEA 92 (422)
T ss_pred ceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHH
Confidence 3333456899999999999999998888888889999999999999999999999999999999999999999999975
Q ss_pred --------CCcCchhHHHhhhcCcEEEeEEe--ccCCCCCCCCCCccEEEEccCCCCccccceeeE--------------
Q 023218 115 --------KGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQV-------------- 170 (285)
Q Consensus 115 --------~~~~s~~~~LRk~ldlyanvRP~--~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~-------------- 170 (285)
..|+|||.++|..|+..+..+|+ +.+|.+.+.. ...++|=|+.-++.|......+
T Consensus 93 Rv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW-~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~d 171 (422)
T KOG1526|consen 93 RVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGW-TKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSD 171 (422)
T ss_pred HHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCC-ccceEEeeccccccceeeeEeecCCCeEEEEEecCC
Confidence 26889999999999999999995 5566654333 3567778888777775432211
Q ss_pred -------------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hC----
Q 023218 171 -------------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KY---- 232 (285)
Q Consensus 171 -------------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y---- 232 (285)
.+|++ ..+.+|...++-+|+.+|++|.++ +.++++.+|..+||..||.|+++|+|+.+ +|
T Consensus 172 g~~~~~~~V~~f~~~G~~-~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kf 249 (422)
T KOG1526|consen 172 GTQKVTLKVYDFKGSGVA-AMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKF 249 (422)
T ss_pred CCcceeEEEEecCCCcee-EEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 02233 467788899999999999999997 79999999999999999999999999973 44
Q ss_pred --CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 233 --PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 233 --pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
-+|++||++||.|.+|.+++-++| |+.|.|+.||+-||+.|+-.|||||+.|
T Consensus 250 e~~~IwYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTS 303 (422)
T KOG1526|consen 250 EALGIWYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 303 (422)
T ss_pred HhhcchhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhhee
Confidence 479999999999999999999999 9999999999999999999999999876
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=73.38 E-value=17 Score=27.75 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCCccceeeeHHHHHHHHHhCCCCccEEEeCC
Q 023218 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 191 r~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~N 263 (285)
++++.+|++++..+|+.+|.+ .-+.+.+++-+ +...+-.+....-|. ......+++||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDIS-------PEMLEIARERAAEEGLSDRITFVQGDA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHHHHTTTTTTEEEEESCC--HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeCC-------HHHHHHHHHHHHhcCCCCCeEEEECcc--ccCcccCCCCCEEEECC
Confidence 356777775456789999843 33444455544 222333333344443 55667778899999999
No 33
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=71.30 E-value=7.2 Score=38.76 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.4
Q ss_pred CccEEEEccCCCCccccceeeEeC
Q 023218 149 DVNLITIRENTEGEYSGLEHQVVR 172 (285)
Q Consensus 149 ~vD~vIvREnteG~Y~g~~~~~~~ 172 (285)
+.+++++||||||.|.+.+.....
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~r 150 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVDG 150 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEec
Confidence 478999999999999998876543
No 34
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=55.38 E-value=12 Score=37.29 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.6
Q ss_pred CccEEEEccCCCCccccceeeEe
Q 023218 149 DVNLITIRENTEGEYSGLEHQVV 171 (285)
Q Consensus 149 ~vD~vIvREnteG~Y~g~~~~~~ 171 (285)
..+++|+||||||.|.+.+....
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~viv 146 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVVP 146 (409)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 38999999999999999876543
No 35
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=55.33 E-value=86 Score=23.46 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCcccc--------ccHHHHHHHHHHHHh--CCCccceeeeHHH----HHHH
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQK--------TDGLFLKCCREVAEK--YPEITYEEVVIDN----CCMM 248 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~--------t~glf~~~~~eva~~--ypdV~~~~~~vDa----~~~~ 248 (285)
...+.+++++|.++|..+ ..+++++|=..-... ...-.++..+.+.+. ++++.+...+++. ...+
T Consensus 9 ~~~~~~~l~~a~~~a~~~-~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRL-GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 467888999999999987 477887763221110 112233444444333 5778776665443 2333
Q ss_pred HHhCCCCccEEEeCC---------chhhHHhhhhh
Q 023218 249 LVKNPAAFDVLVMPN---------LYGDIISDLCA 274 (285)
Q Consensus 249 Lv~~P~~fDVIVt~N---------lfGDILSDlaa 274 (285)
.+. -.++|++|... ++|++...+.-
T Consensus 88 ~~~-~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~ 121 (130)
T cd00293 88 AAE-ELGADLIVMGSRGRSGLRRLLLGSVAERVLR 121 (130)
T ss_pred HHH-HcCCCEEEEcCCCCCccceeeeccHHHHHHh
Confidence 333 46789888764 56666655543
No 36
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=55.17 E-value=11 Score=36.48 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=18.3
Q ss_pred CceEEEEEcCC--CccHHHHHHHH
Q 023218 40 TPITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 40 ~~~~IavipGD--GIGpEV~~aa~ 61 (285)
++.+|++--|| ||||||+-.+.
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 2 KKPIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CCCeEEEeCCCCcchHHHHHHHHH
Confidence 34589999998 89999998774
No 37
>PRK12862 malic enzyme; Reviewed
Probab=54.20 E-value=60 Score=34.89 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=67.1
Q ss_pred EeecHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCcc---ccccHHHHHHHHHHHHhCCCcccee-eeHHHHHHHHHhC-
Q 023218 179 KIITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIM---QKTDGLFLKCCREVAEKYPEITYEE-VVIDNCCMMLVKN- 252 (285)
Q Consensus 179 ~~~Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~KaNvl---~~t~glf~~~~~eva~~ypdV~~~~-~~vDa~~~~Lv~~- 252 (285)
.-.|.+...+|++.+.++++.-| ..||-+..-+|.- ......-++.++.+.+++|++.++- +-.|++...=+..
T Consensus 607 ~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~ 686 (763)
T PRK12862 607 EDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDR 686 (763)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhh
Confidence 34578889999999999998654 4567777333332 2233455666666667889887764 6778776442222
Q ss_pred --C-----CCccEEEeCCch-hhHHhhhhhhccC
Q 023218 253 --P-----AAFDVLVMPNLY-GDIISDLCAGLIG 278 (285)
Q Consensus 253 --P-----~~fDVIVt~Nlf-GDILSDlaa~l~G 278 (285)
| +.|||+|++|+. |.|.--+...+.|
T Consensus 687 K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 687 IFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred cCCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 349999999996 7777776665553
No 38
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=54.11 E-value=35 Score=29.80 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeC
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~ 262 (285)
++| |..||-++|+.|+|..-. ....++-.+.+..+- .+.+-..-+-....++......||+|.+.
T Consensus 57 GlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 57 GLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp HHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred HHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 566 678888999999987643 235555555543221 22222222223445666778999988764
No 39
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=54.08 E-value=76 Score=28.52 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=22.6
Q ss_pred CceEEEEEcC---CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPG---DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipG---DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+...|+++-- +---.++.....+.++..+..+.+
T Consensus 34 ~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 70 (309)
T PRK11041 34 ESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLI 70 (309)
T ss_pred CCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEE
Confidence 3468887743 335667777777777777766654
No 40
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=53.36 E-value=12 Score=36.05 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=18.4
Q ss_pred CceEEEEEcCC--CccHHHHHHHH
Q 023218 40 TPITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 40 ~~~~IavipGD--GIGpEV~~aa~ 61 (285)
.+.+|++--|| ||||||+-.+.
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 44689999998 89999998774
No 41
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.39 E-value=52 Score=25.65 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCccHHHH-HHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 40 TPITATLFPGDGIGPEIA-ESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~-~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
+..+|.++=|.|++-.++ ....++++.-+++++++...++.-. +...++|++|.+|
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~-------------~~~~~~Dvill~p 58 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAG-------------EKLDDADVVLLAP 58 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHH-------------hhcCCCCEEEECc
Confidence 457999999999997754 3445555556888887666654311 2345689999887
No 42
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=52.23 E-value=75 Score=27.86 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=52.4
Q ss_pred EEEEEcC-CCccHHHHHHHHHHHHHcCCCeEEEEEec----cce----ecCCCCCCcChhhHH----HhhhcCeEEECCc
Q 023218 43 TATLFPG-DGIGPEIAESVKQVFRTAEVPVEWEEHYV----GTE----IDPRTQSFLTWESLE----SVRRNKVGLKGPM 109 (285)
Q Consensus 43 ~IavipG-DGIGpEV~~aa~~VL~a~~~~ie~~~~~~----G~~----~~~~~~~~lp~e~~~----~ik~~daiL~Gav 109 (285)
.|...|= +|---.+.+++++-++..|.+++.....- +.. ........+++|+++ .++++|++++|.
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs- 83 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS- 83 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC-
Confidence 4444443 88888999999999999998887655431 111 112111555555444 499999999875
Q ss_pred cCCCCCCcCchhHHHhhhcCc
Q 023218 110 ATPIGKGHRSLNLTLRKELNL 130 (285)
Q Consensus 110 ~~p~~~~~~s~~~~LRk~ldl 130 (285)
|.. +.....+++.-+|-
T Consensus 84 --Pvy--~g~vsa~~K~fiDR 100 (207)
T COG0655 84 --PVY--FGNVSAQMKAFIDR 100 (207)
T ss_pred --Cee--cCCchHHHHHHHhh
Confidence 432 12334567777774
No 43
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=52.22 E-value=1.2e+02 Score=26.66 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeee-----HH---HHHHHHHhCCC
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKNPA 254 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~-----vD---a~~~~Lv~~P~ 254 (285)
.......+++..+.. +|.+++.++.=.+-. .+.....+-+.+..+++|++++.... .+ ..+.++++...
T Consensus 105 ~~~g~~~~~~l~~~~--~g~~~i~~l~~~~~~-~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (270)
T cd06308 105 YEIGRQAGEYIANLL--PGKGNILEIWGLEGS-SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANP 181 (270)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCC-chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCC
Confidence 344444555544432 255677777411111 12233445666666777776543221 11 24456665444
Q ss_pred CccEEEeCC
Q 023218 255 AFDVLVMPN 263 (285)
Q Consensus 255 ~fDVIVt~N 263 (285)
.+|.|+|.|
T Consensus 182 ~~~aI~~~~ 190 (270)
T cd06308 182 DIDLVYAHN 190 (270)
T ss_pred CCcEEEeCC
Confidence 789888865
No 44
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=51.47 E-value=62 Score=25.78 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCccHHHHH-HHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 41 PITATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~-aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
..+|.++=|-|+|-.++- ...+..+..+.+++.+.+..... . +...++|++|.||
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~-----~--------~~~~~~DviLl~P 58 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA-----G--------EKGQNADVVLLGP 58 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchh-----h--------ccccCCCEEEECH
Confidence 468999999999999988 66666777788877655432211 0 1234679999997
No 45
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=49.54 E-value=16 Score=35.55 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.5
Q ss_pred eEEEEEcCC--CccHHHHHHHH
Q 023218 42 ITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 42 ~~IavipGD--GIGpEV~~aa~ 61 (285)
.+|++--|| ||||||+-.+.
T Consensus 10 p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 10 PRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CcEEEeCCCCcchHHHHHHHHH
Confidence 589999998 89999998775
No 46
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=48.24 E-value=1.4e+02 Score=25.91 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcccee-----eeHH---HHHHHHHhCCC
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-----VVID---NCCMMLVKNPA 254 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~-----~~vD---a~~~~Lv~~P~ 254 (285)
......++++..+.+. |.+++.++.-.+-.. +...+.+-+.+..++|+++++.. ...+ ..+.++.+.+.
T Consensus 104 ~~~~~~~~~~l~~~~~--g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (268)
T cd06323 104 VAGGKMAAEYLVKLLG--GKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHP 180 (268)
T ss_pred HHHHHHHHHHHHHHhC--CCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCC
Confidence 3445555555554321 456677664222121 33445556666556666654321 1111 23456666555
Q ss_pred CccEEEeCCc
Q 023218 255 AFDVLVMPNL 264 (285)
Q Consensus 255 ~fDVIVt~Nl 264 (285)
.+|.|+|.|-
T Consensus 181 ~~~ai~~~~d 190 (268)
T cd06323 181 DIKGVFAQND 190 (268)
T ss_pred CcCEEEEcCC
Confidence 7888888763
No 47
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=47.76 E-value=1.5e+02 Score=25.96 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEEEcCC---CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 43 TATLFPGD---GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 43 ~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
||+|+.-+ -.-.+++....+.++..|.++.+...+.... +.. ..+.++.+ .+.|++++.+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~----~~~--~~~~i~~l~~~~vdgiIi~~~~ 67 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGD----QQG--QLSIAENMINKGYKGLLFSPIS 67 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCC----HHH--HHHHHHHHHHhCCCEEEECCCC
Confidence 35555432 2234566667777777777766544332111 000 11222333 357888887643
No 48
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=47.15 E-value=17 Score=35.20 Aligned_cols=21 Identities=48% Similarity=0.534 Sum_probs=17.7
Q ss_pred ceEEEEEcCC--CccHHHHHHHH
Q 023218 41 PITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 41 ~~~IavipGD--GIGpEV~~aa~ 61 (285)
..+|++-.|| ||||||+-.+.
T Consensus 3 ~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 3 MRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 3589999998 99999987774
No 49
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.93 E-value=1.9e+02 Score=25.12 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeee----HHH---HHHHHHhCCCCc
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV----IDN---CCMMLVKNPAAF 256 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~----vDa---~~~~Lv~~P~~f 256 (285)
.+....+++..+.. .|.+++.++.-. -.. +.....+-|++..+++|++++.... -+. .+..++.....+
T Consensus 105 ~~g~~~~~~l~~~~--~g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (267)
T cd06322 105 AGGVLAGELAAKVL--NGKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDL 180 (267)
T ss_pred HHHHHHHHHHHHHh--CCCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCC
Confidence 34444444444432 255677777532 222 2334555666666677776543221 121 234555444478
Q ss_pred cEEEeCCc
Q 023218 257 DVLVMPNL 264 (285)
Q Consensus 257 DVIVt~Nl 264 (285)
++|+|.|-
T Consensus 181 ~ai~~~~d 188 (267)
T cd06322 181 DGIFAFGD 188 (267)
T ss_pred CEEEEcCC
Confidence 99999873
No 50
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=46.36 E-value=16 Score=35.28 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=15.6
Q ss_pred CceEEEEEcCC--CccHHHHH
Q 023218 40 TPITATLFPGD--GIGPEIAE 58 (285)
Q Consensus 40 ~~~~IavipGD--GIGpEV~~ 58 (285)
.+.+|++-.|| ||||||+.
T Consensus 2 ~~~~iAit~GDPaGIGPEi~~ 22 (332)
T COG1995 2 TKPRIAITMGDPAGIGPELVA 22 (332)
T ss_pred CCCceEecCCCcccCCHHHHH
Confidence 45689999998 99999943
No 51
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=45.99 E-value=1.5e+02 Score=31.95 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEE---EcCCccccccHHHHHHHHHHHHhCCCcccee-eeHHHHHHH------HH
Q 023218 182 TRQASLRVAEYAFHYAKTHG-RERVSAI---HKANIMQKTDGLFLKCCREVAEKYPEITYEE-VVIDNCCMM------LV 250 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~-~~~Vt~v---~KaNvl~~t~glf~~~~~eva~~ypdV~~~~-~~vDa~~~~------Lv 250 (285)
|-+.--.|+..|-++|+.-| ..||-++ ++.|.-..+...-++..+.+.+++|++.++= +.+|++.-. ..
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 45566677888888888654 3578888 6655332233455666666666789887765 567766422 22
Q ss_pred hCC--CCccEEEeCCch-hhHHhhhhhhccCCc
Q 023218 251 KNP--AAFDVLVMPNLY-GDIISDLCAGLIGGL 280 (285)
Q Consensus 251 ~~P--~~fDVIVt~Nlf-GDILSDlaa~l~Ggl 280 (285)
.+| +.-||+|.||+- |+|+--+...+.|+.
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 233 356899999996 888888887777663
No 52
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=45.75 E-value=16 Score=37.03 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=28.2
Q ss_pred CccEEEEccCCCCccccceeeEe-CCeEEEEEeecHHHHH
Q 023218 149 DVNLITIRENTEGEYSGLEHQVV-RGVVESLKIITRQASL 187 (285)
Q Consensus 149 ~vD~vIvREnteG~Y~g~~~~~~-~~~a~~~~~~Tr~~~e 187 (285)
..+++|.|||+||.|.+.+.... +|. -..++||+..|
T Consensus 195 ~~pI~i~Rha~gd~Y~~iD~vi~~~g~--~~~~~~rEnte 232 (483)
T PLN03065 195 KKPICIGRHAFGDQYRATDTVIKGPGK--LKMVFVPEDGN 232 (483)
T ss_pred CCCeEEeecccCCCcCceEEEEecCCe--eEEEeecCCCC
Confidence 48999999999999999887643 343 35567777666
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=44.00 E-value=1.1e+02 Score=23.38 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC--CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhh--
Q 023218 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGD-- 267 (285)
Q Consensus 192 ~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y--pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGD-- 267 (285)
.++.+|++.+..+|+.+|.+.. ..+.+++-.+++ +.+++ ..-|.. ..+-..+..||+|++.+-..+
T Consensus 33 ~~~~l~~~~~~~~v~~vD~s~~-------~~~~a~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~D~v~~~~~~~~~~ 102 (124)
T TIGR02469 33 ITIEAARLVPNGRVYAIERNPE-------ALRLIERNARRFGVSNIVI--VEGDAP-EALEDSLPEPDRVFIGGSGGLLQ 102 (124)
T ss_pred HHHHHHHHCCCceEEEEcCCHH-------HHHHHHHHHHHhCCCceEE--Eecccc-ccChhhcCCCCEEEECCcchhHH
Confidence 4566676654468999985432 233344433332 33322 222211 112234568999998774444
Q ss_pred -HHhhhhhhc
Q 023218 268 -IISDLCAGL 276 (285)
Q Consensus 268 -ILSDlaa~l 276 (285)
++..+...|
T Consensus 103 ~~l~~~~~~L 112 (124)
T TIGR02469 103 EILEAIWRRL 112 (124)
T ss_pred HHHHHHHHHc
Confidence 444444333
No 54
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=43.84 E-value=91 Score=29.81 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=55.2
Q ss_pred CcChhhHHHhhhcCeEEECCccCCCC---C--CcCchhHHHhhhcCcEEEeEEecc---CCC----------CCC-----
Q 023218 89 FLTWESLESVRRNKVGLKGPMATPIG---K--GHRSLNLTLRKELNLYANVRPCYS---LPG----------YKT----- 145 (285)
Q Consensus 89 ~lp~e~~~~ik~~daiL~Gav~~p~~---~--~~~s~~~~LRk~ldlyanvRP~~~---~pg----------~~~----- 145 (285)
.-.++++++++++|.+++|| ++|.. + ......-+||+.=---+.|=|+-- +.| ++.
T Consensus 172 ~~~p~vl~AI~~AD~IVlGP-gsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gv 250 (303)
T cd07186 172 RPAPEVLEAIEDADLVIIGP-SNPVTSIGPILALPGIREALRDKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGV 250 (303)
T ss_pred CCCHHHHHHHHhCCEEEECC-CccHHHhhhhccchhHHHHHHhCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHH
Confidence 34678899999999999999 33321 1 111223345555333344444321 122 111
Q ss_pred --CCCC-ccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHH
Q 023218 146 --RYDD-VNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (285)
Q Consensus 146 --~~~~-vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AF 194 (285)
.|++ +|..|+-+--.+.=...+.....-.+.++..-+.+..+|++|...
T Consensus 251 a~~Y~~~~d~~vid~~D~~~~~~~~~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 251 AEIYGDLLDGFVIDEADRALADAIEALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHHhhccccEEEEcccccccchhcccCCceeEecCccCCCHHHHHHHHHHHh
Confidence 2454 487777654433221111100011345667778888999998764
No 55
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.63 E-value=66 Score=29.53 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCccH-HHHHHHHHHHHHcCCC-eEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 40 TPITATLFPGDGIGP-EIAESVKQVFRTAEVP-VEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 40 ~~~~IavipGDGIGp-EV~~aa~~VL~a~~~~-ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
...||++||-.+-.| +..+...+.++.+|+. ++. .++.. .++.-.++.++.++++|+++++-
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~--l~i~~-----r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKI--LDVRE-----REDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEE--EecCC-----hHHccCHHHHHHHhhCCEEEEeC
Confidence 346999999655445 6788888999999874 443 33321 12223455668999999999864
No 56
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=43.00 E-value=21 Score=34.41 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=17.9
Q ss_pred ceEEEEEcCC--CccHHHHHHHH
Q 023218 41 PITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 41 ~~~IavipGD--GIGpEV~~aa~ 61 (285)
+.+|++--|| ||||||+-.++
T Consensus 5 ~p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 5 PLQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 4589999998 99999998775
No 57
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=42.65 E-value=1.5e+02 Score=22.68 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccc--------cHHHHHHHHH---HHHhCCCccceeeeH-----HHHHH
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIHKANIMQKT--------DGLFLKCCRE---VAEKYPEITYEEVVI-----DNCCM 247 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t--------~glf~~~~~e---va~~ypdV~~~~~~v-----Da~~~ 247 (285)
+.+++++++|+.+|++. ..+|+++|=.+..... ....++..++ .+++ .+++++...+ -....
T Consensus 10 ~~~~~~l~~a~~la~~~-~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~I~ 87 (132)
T cd01988 10 NTARDLLELAAALARAQ-NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAAS-LGVPVHTIIRIDHDIASGIL 87 (132)
T ss_pred hhHHHHHHHHHHHhhcC-CCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhh-cCCceEEEEEecCCHHHHHH
Confidence 56889999999999885 4677777654432111 0011122222 2223 3555554432 12333
Q ss_pred HHHhCCCCccEEEeCCc
Q 023218 248 MLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 248 ~Lv~~P~~fDVIVt~Nl 264 (285)
+++ +..+.|.||+.+-
T Consensus 88 ~~a-~~~~~dlIV~G~~ 103 (132)
T cd01988 88 RTA-KERQADLIIMGWH 103 (132)
T ss_pred HHH-HhcCCCEEEEecC
Confidence 444 3478898888765
No 58
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=42.23 E-value=2.2e+02 Score=26.99 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCcEEEEEc---CCccccccHHHHHHHHHHHHhCCCcccee-eeHHHHHHH------H
Q 023218 182 TRQASLRVAEYAFHYAKTHG--RERVSAIHK---ANIMQKTDGLFLKCCREVAEKYPEITYEE-VVIDNCCMM------L 249 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~--~~~Vt~v~K---aNvl~~t~glf~~~~~eva~~ypdV~~~~-~~vDa~~~~------L 249 (285)
|-+.--.|+..|.++|+.-+ ..||-++.= .|--..+...-++.+.-+.+++|++.++= +-+|++.-. .
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 45555667888889998655 456666532 33211122344555555545788887764 556766422 1
Q ss_pred HhCC--CCccEEEeCCch-hhHHhhhhhhccCC
Q 023218 250 VKNP--AAFDVLVMPNLY-GDIISDLCAGLIGG 279 (285)
Q Consensus 250 v~~P--~~fDVIVt~Nlf-GDILSDlaa~l~Gg 279 (285)
..+| +.-||+|+||++ |+|+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2222 467999999987 77776665555443
No 59
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=41.73 E-value=1.9e+02 Score=25.22 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHHcCCCeEE
Q 023218 52 IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 52 IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
--.+++....+.++..+..+.+
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~~~ 34 (268)
T cd06270 13 FFGPLLSGVESVARKAGKHLII 34 (268)
T ss_pred chHHHHHHHHHHHHHCCCEEEE
Confidence 3346777777777777776665
No 60
>PRK07742 phosphate butyryltransferase; Validated
Probab=41.37 E-value=3.1e+02 Score=25.79 Aligned_cols=214 Identities=14% Similarity=0.187 Sum_probs=108.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceec--------CC-CCC---Cc----Chh----hHHHh
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID--------PR-TQS---FL----TWE----SLESV 98 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~--------~~-~~~---~l----p~e----~~~~i 98 (285)
..+.||++-.|+ -+++++++.+.++.-. ++ .+.+|.+.. .. ..+ .+ +.+ .++.+
T Consensus 13 ~~~~ri~~~~~~--d~~vl~Aa~~a~~e~~--~~--~iLvG~~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~lV 86 (299)
T PRK07742 13 QPKKTVAVAVAE--DEEVIEAVAKAIELQL--AR--FRLYGNQEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKAV 86 (299)
T ss_pred CCCCeEEEeCCC--CHHHHHHHHHHHHcCC--ce--EEEECCHHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHHH
Confidence 345788887765 6789999988887632 22 233443210 00 000 00 112 24555
Q ss_pred h--hcCeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEE
Q 023218 99 R--RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVE 176 (285)
Q Consensus 99 k--~~daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~ 176 (285)
+ ++|++++|..++ -..+|..++....+++...+..+ =++.+ ...+|.+. .-+.+.
T Consensus 87 ~~G~aD~lvsG~~tt---------a~~~~~~l~~~~Gi~~~~~~s~v-------~~~~~-P~~~~~~~------l~D~g~ 143 (299)
T PRK07742 87 RNGEADVLMKGNVPT---------ANILKAVLNKEWGLRKGSVLSHV-------AVFEV-PNYDRLIF------VTDAAM 143 (299)
T ss_pred HCCCCCEEEECCcCH---------HHHHHHHhccccCCCCCCcccce-------ehhhe-ecCCCcEE------EEecee
Confidence 6 899999988753 12346666544444433322211 00000 00011111 112222
Q ss_pred EEEeecHHHHHHHHHHHHHHHHhCCC--CcEEEEEcCCccccccHHHHHHHHHHHH-----hCCCcccee-eeHHHHHHH
Q 023218 177 SLKIITRQASLRVAEYAFHYAKTHGR--ERVSAIHKANIMQKTDGLFLKCCREVAE-----KYPEITYEE-VVIDNCCMM 248 (285)
Q Consensus 177 ~~~~~Tr~~~eRIar~AFe~A~~r~~--~~Vt~v~KaNvl~~t~glf~~~~~eva~-----~ypdV~~~~-~~vDa~~~~ 248 (285)
+..+ |-+.--.|+..|.++|+.-|. .||-+..=.+--......-++.+ ++++ ++|++.+|- +..|++.-.
T Consensus 144 n~~p-~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA~-~l~~~~~~~~~~~~~vdG~l~~D~A~~~ 221 (299)
T PRK07742 144 NIAP-DLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAA-ALTQMNRRGQIKNCVVDGPLALDNAVSQ 221 (299)
T ss_pred cCCc-CHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHHH-HHHHHHhhCCCCCeEEeechHHHHhcCH
Confidence 2222 455666778888899986553 56766643332211233444432 3332 368887754 556765422
Q ss_pred ------HHhCC--CCccEEEeCCch-hhHHhhhhhhccCCcccCC
Q 023218 249 ------LVKNP--AAFDVLVMPNLY-GDIISDLCAGLIGGLGLTP 284 (285)
Q Consensus 249 ------Lv~~P--~~fDVIVt~Nlf-GDILSDlaa~l~GglGl~p 284 (285)
-..+| +..||+|.||+- |+|+--+...+.|+ .+.|
T Consensus 222 ~~a~~k~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~~g~ 265 (299)
T PRK07742 222 IAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-KVGA 265 (299)
T ss_pred HHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-cEec
Confidence 12233 357899999985 78877766665554 4433
No 61
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.99 E-value=2.5e+02 Score=24.89 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEE
Q 023218 54 PEIAESVKQVFRTAEVPVEWE 74 (285)
Q Consensus 54 pEV~~aa~~VL~a~~~~ie~~ 74 (285)
.+++....+.+++.|..+.|.
T Consensus 15 ~~~~~gi~~~~~~~G~~~~~~ 35 (272)
T cd06313 15 AQGKQAADEAGKLLGVDVTWY 35 (272)
T ss_pred HHHHHHHHHHHHHcCCEEEEe
Confidence 367777777777777777663
No 62
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=38.64 E-value=22 Score=33.95 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=16.3
Q ss_pred eEEEEEcCC--CccHHHHHHH
Q 023218 42 ITATLFPGD--GIGPEIAESV 60 (285)
Q Consensus 42 ~~IavipGD--GIGpEV~~aa 60 (285)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 478888888 9999999877
No 63
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.31 E-value=2.6e+02 Score=24.14 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=16.8
Q ss_pred CccHHHHHHHHHHHHHcCCCeEEE
Q 023218 51 GIGPEIAESVKQVFRTAEVPVEWE 74 (285)
Q Consensus 51 GIGpEV~~aa~~VL~a~~~~ie~~ 74 (285)
--..++.....+.++..+.++.+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~ 35 (270)
T cd01545 12 GYVSEIQLGALDACRDTGYQLVIE 35 (270)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEE
Confidence 345677788888888877666654
No 64
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.62 E-value=99 Score=32.21 Aligned_cols=105 Identities=16% Similarity=0.079 Sum_probs=66.8
Q ss_pred eEEEEEeecHHHHHH-HHHHHHHHHHhC--CCC--------cEEEEEcCCccccccHHHHHHHHHHHH----hCCCccce
Q 023218 174 VVESLKIITRQASLR-VAEYAFHYAKTH--GRE--------RVSAIHKANIMQKTDGLFLKCCREVAE----KYPEITYE 238 (285)
Q Consensus 174 ~a~~~~~~Tr~~~eR-Iar~AFe~A~~r--~~~--------~Vt~v~KaNvl~~t~glf~~~~~eva~----~ypdV~~~ 238 (285)
++..+--.+-.++|| +.|.|.+.|+.- ++| +|+++-.+=--+..-.+|.+...+ +. +|.++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE-EQVEVLEIAKITGN 242 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh-cCCceEEeeccchh
Confidence 555555566666665 788898888642 233 688887766666666799988877 22 23333211
Q ss_pred e--------------------eeHHHHH--HHHHhCCCCccEEEeCCchhhHHhhhhhhccCCc
Q 023218 239 E--------------------VVIDNCC--MMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGL 280 (285)
Q Consensus 239 ~--------------------~~vDa~~--~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~Ggl 280 (285)
+ ..+++.. +.+++. .++|||-|-|....+++=++|-++|-.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~-~rpDIVHt~~~~a~l~g~laA~lagvp 305 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCE-RKLDYLSVWQDGACLMIALAALIAGVP 305 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHH-cCCCEEEEcCcccHHHHHHHHHhcCCC
Confidence 1 1122221 333433 789999999988888888888887754
No 65
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=37.31 E-value=99 Score=23.05 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCC
Q 023218 185 ASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPE 234 (285)
Q Consensus 185 ~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypd 234 (285)
-...+++.|+++|++++ .+|.. ++.+-...+++ ..+|.|
T Consensus 39 ia~~L~~~~l~~a~~~~-~kv~p---------~C~y~~~~~~~-hpey~d 77 (78)
T PF14542_consen 39 IAKKLVEAALDYARENG-LKVVP---------TCSYVAKYFRR-HPEYQD 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---------TSHHHHHHHHH--GGGTT
T ss_pred HHHHHHHHHHHHHHHCC-CEEEE---------ECHHHHHHHHh-Cccccc
Confidence 36789999999999986 44443 45565555543 334444
No 66
>PRK12861 malic enzyme; Reviewed
Probab=37.23 E-value=2.6e+02 Score=30.21 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCc---cccccHHHHHHHHHHHHhCCCcccee-eeHHHHHHHHH------
Q 023218 182 TRQASLRVAEYAFHYAKTHG-RERVSAIHKANI---MQKTDGLFLKCCREVAEKYPEITYEE-VVIDNCCMMLV------ 250 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~KaNv---l~~t~glf~~~~~eva~~ypdV~~~~-~~vDa~~~~Lv------ 250 (285)
|-+..-.|+..|.++|+.-| ..||-+..=+|. -..+....++..+-+.+++|++.++- +..|++.-.-+
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 34445556667778887654 246666642332 21133455666665555789988864 67786543211
Q ss_pred hCC--CCccEEEeCCc-hhhHHhhhhhhccC
Q 023218 251 KNP--AAFDVLVMPNL-YGDIISDLCAGLIG 278 (285)
Q Consensus 251 ~~P--~~fDVIVt~Nl-fGDILSDlaa~l~G 278 (285)
.+| +.-||+|+||+ =|+|+-.+.-.+.|
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g 721 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAG 721 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcC
Confidence 122 45789999999 89999998877765
No 67
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=37.15 E-value=48 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCC
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP 233 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yp 233 (285)
.+..|||.|.|.+-=.. + |..++.=|+.+|++++++|-
T Consensus 23 ~keaERigr~AlKaGL~------------e-ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 23 TKEAERIGRIALKAGLG------------E-IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHHcccc------------c-ccCCHHHHHHHHHHHHHHHh
Confidence 56789999987542221 1 33578899999999998873
No 68
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.13 E-value=2.7e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcCCCeEE
Q 023218 54 PEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 54 pEV~~aa~~VL~a~~~~ie~ 73 (285)
.++.....+.++..+..+.+
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~ 34 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTL 34 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEE
Confidence 56777777788877666554
No 69
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=36.65 E-value=2.6e+02 Score=23.62 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceee-----eHH---HHHHHHHhCCCCccEEE
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-----VID---NCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~-----~vD---a~~~~Lv~~P~~fDVIV 260 (285)
..+.+.+++.+.+.++|.+++-.+-.. ....+.+-+++..+++++++.... -.+ ....+++..-...|+|+
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 445566666666677888876543322 223444445554444432221111 112 23345555433688888
Q ss_pred eCCc
Q 023218 261 MPNL 264 (285)
Q Consensus 261 t~Nl 264 (285)
+.|-
T Consensus 184 ~~~~ 187 (264)
T cd01537 184 AAND 187 (264)
T ss_pred EcCc
Confidence 8873
No 70
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=36.07 E-value=1e+02 Score=23.93 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=35.6
Q ss_pred EEEEEcCCCccHHHHH-HHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 43 TATLFPGDGIGPEIAE-SVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 43 ~IavipGDGIGpEV~~-aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
||.++=|.|++..++. ...+.++.-+.+++++...++... +...++|.+|.+|
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~Diil~~P 54 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELE-------------EYIDDADVVLLGP 54 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHH-------------HhcCCCCEEEECh
Confidence 4788889999988653 334444555788777666654321 2345789999887
No 71
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=35.77 E-value=1.4e+02 Score=27.55 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCC-Cccc------eeeeHHHHHHHHHhCCCCccEEE
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYP-EITY------EEVVIDNCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-dV~~------~~~~vDa~~~~Lv~~P~~fDVIV 260 (285)
....||..-....+..+..+||.--.+..+||-...-.=++ -||. +++. +..+...+.+-+=.+|++- ||+
T Consensus 126 ~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~a-VMI 204 (262)
T KOG3040|consen 126 RLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEA-VMI 204 (262)
T ss_pred HHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHh-eEE
Confidence 45668999988766789999999999989999876544443 3553 3332 3446666666666788887 999
Q ss_pred eCCchhhHHhhhhhhcc
Q 023218 261 MPNLYGDIISDLCAGLI 277 (285)
Q Consensus 261 t~NlfGDILSDlaa~l~ 277 (285)
-..+-+|+..-+..++-
T Consensus 205 GDD~~dDvgGAq~~GMr 221 (262)
T KOG3040|consen 205 GDDLNDDVGGAQACGMR 221 (262)
T ss_pred ccccccchhhHhhhcce
Confidence 88777777665555443
No 72
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=35.19 E-value=1.4e+02 Score=23.54 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHH
Q 023218 186 SLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 244 (285)
Q Consensus 186 ~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa 244 (285)
..+-.+-.|.-+.+++++-|...++.+-- .+...+.++++++++|+.|++...-+|.
T Consensus 7 ~~~~~~~~~~~~l~~~~~vvv~f~a~wC~--~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 7 DRKALKEEFFKEMKNPVDLVVFSSKEGCQ--YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCCCCC--ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 34445554555566543333333555443 4678889999999889888888777774
No 73
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.18 E-value=2.7e+02 Score=24.11 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHHHHcCCCeEE
Q 023218 52 IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 52 IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
--.+++....+.++..+..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~ 39 (270)
T cd06294 18 FFIEVLRGISAVANENGYDISL 39 (270)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE
Confidence 3457778888888887766654
No 74
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=34.26 E-value=57 Score=29.89 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCCCCCcChhhHHHhhhc--CeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCC-CCCccEEEEcc--C
Q 023218 84 PRTQSFLTWESLESVRRN--KVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR-YDDVNLITIRE--N 158 (285)
Q Consensus 84 ~~~~~~lp~e~~~~ik~~--daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~-~~~vD~vIvRE--n 158 (285)
-.|++..+++.++.+.++ |+++.|-...=...........+|+ .+ -||-.+||-.+. .++.|.+.+=- |
T Consensus 14 iDP~k~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~~-----lPvilfp~~~~~i~~~aDa~l~~svlN 87 (232)
T PRK04169 14 LDPDKPLPDEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-YD-----LPVILFPGNIEGISPGADAYLFPSVLN 87 (232)
T ss_pred ECCCCCCCHHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-CC-----CCEEEeCCCccccCcCCCEEEEEEEec
Confidence 467788888877766554 9999986432111111233456776 66 477777775432 35577665543 4
Q ss_pred CCCcc
Q 023218 159 TEGEY 163 (285)
Q Consensus 159 teG~Y 163 (285)
+...|
T Consensus 88 s~~~~ 92 (232)
T PRK04169 88 SRNPY 92 (232)
T ss_pred CCCcc
Confidence 44444
No 75
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.93 E-value=78 Score=31.34 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCCccceeeeHHHHHHHHHhCCCCcc------EE
Q 023218 187 LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPEITYEEVVIDNCCMMLVKNPAAFD------VL 259 (285)
Q Consensus 187 eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypdV~~~~~~vDa~~~~Lv~~P~~fD------VI 259 (285)
-|++|-.|++|+.+ ..-+..+|-- ..++ +.|-+=+--+.-|--..|+|+..=.+|| ||
T Consensus 230 aRlVRelF~lArek-aPsIIFiDEI--------------DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 230 ARLVRELFELAREK-APSIIFIDEI--------------DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred hHHHHHHHHHHhhc-CCeEEEEech--------------hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 48999999999986 3445444433 3333 3443333344455566788888888887 89
Q ss_pred EeCCchhhHH
Q 023218 260 VMPNLYGDII 269 (285)
Q Consensus 260 Vt~NlfGDIL 269 (285)
.++|-. |||
T Consensus 295 ~ATNR~-D~L 303 (406)
T COG1222 295 MATNRP-DIL 303 (406)
T ss_pred EecCCc-ccc
Confidence 999987 555
No 76
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=33.65 E-value=2.4e+02 Score=24.65 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhC--CCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceee-----eHH---HHHHHHHh-CCCCcc
Q 023218 189 VAEYAFHYAKTH--GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-----VID---NCCMMLVK-NPAAFD 257 (285)
Q Consensus 189 Iar~AFe~A~~r--~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~-----~vD---a~~~~Lv~-~P~~fD 257 (285)
..+.+.++..++ +.+++..+.-..-.. ......+-+.+..+++++++.... -.+ .++.++++ +|..+|
T Consensus 109 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (273)
T cd06309 109 EGRRAADWLAKATGGKGNIVELQGTVGSS-VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDDID 187 (273)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCCcc
Confidence 334444444443 566777764221111 223344445554455665432211 112 23455554 565799
Q ss_pred EEEeCCch
Q 023218 258 VLVMPNLY 265 (285)
Q Consensus 258 VIVt~Nlf 265 (285)
.|+|.|-.
T Consensus 188 aI~~~~d~ 195 (273)
T cd06309 188 AVYAHNDE 195 (273)
T ss_pred EEEECCcH
Confidence 99998744
No 77
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.57 E-value=2.8e+02 Score=24.09 Aligned_cols=31 Identities=3% Similarity=-0.109 Sum_probs=20.3
Q ss_pred EEEEEcC---CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 43 TATLFPG---DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 43 ~IavipG---DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+|+++.. |.--.++.....+.++..+..+.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV 34 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE
Confidence 3555533 445567777777778877776665
No 78
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=33.48 E-value=2.1e+02 Score=25.00 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=10.3
Q ss_pred HHHHHHhCCCCcEEEEEcC
Q 023218 193 AFHYAKTHGRERVSAIHKA 211 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~Ka 211 (285)
++.+|+..+..+||.+|++
T Consensus 60 al~la~~~~~~~V~giD~s 78 (187)
T PRK00107 60 GIPLAIARPELKVTLVDSL 78 (187)
T ss_pred HHHHHHHCCCCeEEEEeCc
Confidence 4444544344567777654
No 79
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=33.42 E-value=34 Score=33.00 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=17.0
Q ss_pred eEEEEEcCC--CccHHHHHHHH
Q 023218 42 ITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 42 ~~IavipGD--GIGpEV~~aa~ 61 (285)
++|++--|| ||||||+-.+.
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 568888898 99999987775
No 80
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.26 E-value=2.9e+02 Score=23.83 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHcCCCeEE
Q 023218 53 GPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 53 GpEV~~aa~~VL~a~~~~ie~ 73 (285)
-.++.....+.++..+..+.+
T Consensus 15 ~~~~~~~i~~~~~~~g~~~~~ 35 (269)
T cd06288 15 AVEIILGAQDAAREHGYLLLV 35 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 456777777777777765544
No 81
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=33.14 E-value=3.1e+02 Score=23.75 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=15.7
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 50 DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 50 DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
|---.++.....+.++..+..+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~ 34 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLV 34 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEE
Confidence 445566777777777777766554
No 82
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.90 E-value=3.3e+02 Score=23.70 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=31.8
Q ss_pred EEEEEcCCCccH---HHHHHHHHHHHHc---CCCeEEEEEeccceecCCCCCCcChhhHHH--hhhcCeEEECCcc
Q 023218 43 TATLFPGDGIGP---EIAESVKQVFRTA---EVPVEWEEHYVGTEIDPRTQSFLTWESLES--VRRNKVGLKGPMA 110 (285)
Q Consensus 43 ~IavipGDGIGp---EV~~aa~~VL~a~---~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~--ik~~daiL~Gav~ 110 (285)
||+++--|--.| +++....+.++.. +.++++..++...+. ... .+.++. -++.|+++..+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~----~~~--~~~~~~~~~~~vdgiIi~~~~ 70 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDV----AQQ--IADIRNLIAQGVDAIIINPAS 70 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCH----HHH--HHHHHHHHHcCCCEEEEeCCC
Confidence 455654332222 4666677777777 765666555443321 000 011122 2378999887753
No 83
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=31.99 E-value=80 Score=30.33 Aligned_cols=44 Identities=32% Similarity=0.449 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHH
Q 023218 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID 243 (285)
Q Consensus 191 r~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vD 243 (285)
.||+|+|+ ||-+ |.++- + +..=-..+..|+.++|+ |++.-..+|
T Consensus 64 ayA~eLAk-rG~n-vvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~D 107 (312)
T KOG1014|consen 64 AYARELAK-RGFN-VVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAID 107 (312)
T ss_pred HHHHHHHH-cCCE-EEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEe
Confidence 46888887 4544 66653 3 44555667777777777 776666666
No 84
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.89 E-value=3.8e+02 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCCeEE
Q 023218 54 PEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 54 pEV~~aa~~VL~a~~~~ie~ 73 (285)
.+++....+.++..+..+-+
T Consensus 23 ~~~~~~i~~~~~~~gy~~~~ 42 (269)
T cd06287 23 MEVAAAAAESALERGLALCL 42 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 47777788888887776655
No 85
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=30.21 E-value=3e+02 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHhCCCCccEEEeCCch
Q 023218 245 CCMMLVKNPAAFDVLVMPNLY 265 (285)
Q Consensus 245 ~~~~Lv~~P~~fDVIVt~Nlf 265 (285)
++.+++.++..+|+|+|.|-.
T Consensus 162 ~~~~~l~~~~~~~ai~~~~d~ 182 (261)
T cd06272 162 AAKKLLKESDLPTAIICGSYD 182 (261)
T ss_pred HHHHHHcCCCCCCEEEECCcH
Confidence 334566665568999998843
No 86
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=29.75 E-value=1.8e+02 Score=22.38 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred ceEEEEEcCCCccHHHH--HHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 41 PITATLFPGDGIGPEIA--ESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~--~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
++||.+.=|.|+|-..+ ....++++.-|.+++.+..+++.- . ..++.+|+++-++
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~----~---------~~~~~~D~iv~t~ 58 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI----E---------TYMDGVHLICTTA 58 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH----h---------hhcCCCCEEEECC
Confidence 46899999999999887 556689999999988777655421 1 1235678887665
No 87
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=29.73 E-value=1.7e+02 Score=25.25 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
+..+|+ ++ .+|+.+|.+..+ .+.+++.+++ .++.+.....|.-...+ +..||+|++.+.|.
T Consensus 45 a~~la~-~g-~~V~~iD~s~~~-------l~~a~~~~~~-~~~~v~~~~~d~~~~~~---~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 45 SLYLSL-AG-YDVRAWDHNPAS-------IASVLDMKAR-ENLPLRTDAYDINAAAL---NEDYDFIFSTVVFM 105 (195)
T ss_pred HHHHHH-CC-CeEEEEECCHHH-------HHHHHHHHHH-hCCCceeEeccchhccc---cCCCCEEEEecccc
Confidence 344454 33 579999865433 2223333322 23444444445322222 45799999887663
No 88
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=29.73 E-value=1.1e+02 Score=26.85 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHHH-HHHHHhCCCccceeeeH--HHHHH---HHHhCCC-CccEEEe
Q 023218 220 LFLKCC-REVAEKYPEITYEEVVI--DNCCM---MLVKNPA-AFDVLVM 261 (285)
Q Consensus 220 lf~~~~-~eva~~ypdV~~~~~~v--Da~~~---~Lv~~P~-~fDVIVt 261 (285)
.|.+.+ ++..+++|+|+++...+ ++... ..+..-. .+||+.+
T Consensus 9 ~~~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~ 57 (315)
T PF01547_consen 9 ALQELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFI 57 (315)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEe
Confidence 667777 77777799999999887 44432 1233444 4499998
No 89
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.68 E-value=3.6e+02 Score=23.43 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcccee-------eeHHHHHHHHHhCCCCccEEE
Q 023218 188 RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-------VVIDNCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 188 RIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~-------~~vDa~~~~Lv~~P~~fDVIV 260 (285)
+..+.|.++-.++|.+++.++.... .. +.....+-+++..+++ ++.... .-.-.+++++.+++...+.|+
T Consensus 101 ~~g~~a~~~L~~~g~~~i~~~~~~~-~~-~~~~R~~gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 177 (263)
T cd06280 101 AAARTLVEHLVAQGYRRIGGLFGNA-ST-TGAERRAGYEDAMRRH-GLAPDARFVAPTAEAAEAALAAWLAAPERPEALV 177 (263)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCC-CC-CHHHHHHHHHHHHHHc-CCCCChhhcccCHHHHHHHHHHHhcCCCCCcEEE
Confidence 3445556665666667777664322 11 2222233344433332 111111 111124456666555678888
Q ss_pred eCCch
Q 023218 261 MPNLY 265 (285)
Q Consensus 261 t~Nlf 265 (285)
|.|=.
T Consensus 178 ~~~d~ 182 (263)
T cd06280 178 ASNGL 182 (263)
T ss_pred ECCcH
Confidence 87643
No 90
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.56 E-value=3.8e+02 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEEE
Q 023218 43 TATLFPGDG---IGPEIAESVKQVFRTAEVPVEWE 74 (285)
Q Consensus 43 ~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~~ 74 (285)
||+++..|= -=.+++....+.++..+..+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 35 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQ 35 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 577776551 12456666667777767666553
No 91
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=28.22 E-value=43 Score=32.23 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=14.9
Q ss_pred eecHHHHHHHHHHHHHHHH
Q 023218 180 IITRQASLRVAEYAFHYAK 198 (285)
Q Consensus 180 ~~Tr~~~eRIar~AFe~A~ 198 (285)
.+|.+.+.+-++.+.+.-+
T Consensus 170 ~it~~~i~~~i~~~~~~l~ 188 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLR 188 (320)
T ss_pred HhCHHHHHHHHHHHHHHHH
Confidence 4788888888888877666
No 92
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=27.64 E-value=26 Score=33.42 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.1
Q ss_pred cChhhHHHhhhcCeEEECC
Q 023218 90 LTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 90 lp~e~~~~ik~~daiL~Ga 108 (285)
-.++++++++++|+|++||
T Consensus 172 a~peal~AI~~AD~IIlGP 190 (297)
T TIGR01819 172 IAPKVLEAIRKEDNILIGP 190 (297)
T ss_pred CCHHHHHHHHhCCEEEECC
Confidence 3567889999999999999
No 93
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=27.42 E-value=82 Score=30.41 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.7
Q ss_pred ChhhHHHhhhcCeEEECCccCCCC---CC--cCchhHHHhhhcCcEEEeEEeccCCC
Q 023218 91 TWESLESVRRNKVGLKGPMATPIG---KG--HRSLNLTLRKELNLYANVRPCYSLPG 142 (285)
Q Consensus 91 p~e~~~~ik~~daiL~Gav~~p~~---~~--~~s~~~~LRk~ldlyanvRP~~~~pg 142 (285)
+.+++++++++|.+++|| ++|.. +. ....--.||+.---++.+.|+..-||
T Consensus 180 ~~eaveAI~~AD~IviGP-gSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g 235 (323)
T COG0391 180 APEAVEAIKEADLIVIGP-GSLFTSILPILLLPGIAEALRETVAPIVYVCNLMTQAG 235 (323)
T ss_pred CHHHHHHHHhCCEEEEcC-CccHhhhchhhchhHHHHHHHhCCCCEEEeccCCCCCC
Confidence 567899999999999999 32211 11 11223467776666677777766666
No 94
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=27.07 E-value=1.5e+02 Score=27.19 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHhCCC-CcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHH-HHHhCCCCc
Q 023218 194 FHYAKTHGR-ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCM-MLVKNPAAF 256 (285)
Q Consensus 194 Fe~A~~r~~-~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~-~Lv~~P~~f 256 (285)
.+||.+.++ -+|..+|--.-.+.|..| +.+|-+.|+.|.++.+.-|++.. .++.+-..|
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~l----~d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~ 122 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLRL----FDAVEKKYGNIRIHVYFPDAVEVEALFASKGGF 122 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHHH----HHHHHHhcCceEEEEEcchhHHHHHHHHhccch
Confidence 467766654 368888877777777666 45677899999999999998874 456555444
No 95
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=26.95 E-value=29 Score=33.15 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=17.7
Q ss_pred CcChhhHHHhhhcCeEEECC
Q 023218 89 FLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 89 ~lp~e~~~~ik~~daiL~Ga 108 (285)
.-+++++++++++|.+++||
T Consensus 174 ~a~p~vl~AI~~AD~IiiGP 193 (303)
T PRK13606 174 KPAPGVLEAIEEADAVIIGP 193 (303)
T ss_pred CCCHHHHHHHHhCCEEEECC
Confidence 34678899999999999999
No 96
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.71 E-value=2.8e+02 Score=27.32 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=65.5
Q ss_pred HhhhcCcEEEeEEeccCCCCC--C--CCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHh
Q 023218 124 LRKELNLYANVRPCYSLPGYK--T--RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKT 199 (285)
Q Consensus 124 LRk~ldlyanvRP~~~~pg~~--~--~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~ 199 (285)
|.+.||.-.|+--|+.--++. + ..+..-.+|.|.|+--. +.+ -..++||| ||+|++
T Consensus 202 lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~Rss--lae--------------vqsEiErI----felars 261 (475)
T KOG3812|consen 202 LKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS--LAE--------------VQSEIERI----FELARS 261 (475)
T ss_pred HHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccchhh--HHH--------------HHHHHHHH----HHHHhh
Confidence 556677666666655432321 1 11335566667666411 100 14678887 556654
Q ss_pred CCCCcEEEEEcCCccccccHHH---------------HHHHHHHHHhCCCccceeeeHHHHH-HHHHhC-CCCccEEEeC
Q 023218 200 HGRERVSAIHKANIMQKTDGLF---------------LKCCREVAEKYPEITYEEVVIDNCC-MMLVKN-PAAFDVLVMP 262 (285)
Q Consensus 200 r~~~~Vt~v~KaNvl~~t~glf---------------~~~~~eva~~ypdV~~~~~~vDa~~-~~Lv~~-P~~fDVIVt~ 262 (285)
- .+.++|--.|-. -+.+- -++.+++-+.--.-...|+.+|-++ -+|.+- |+.||||+-+
T Consensus 262 L---qLvvlDadtInh-Paql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildE 337 (475)
T KOG3812|consen 262 L---QLVVLDADTINH-PAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDE 337 (475)
T ss_pred c---eEEEecCCcCCC-HHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeecc
Confidence 2 355554433321 11110 1233333333233467788888665 456665 5689999999
Q ss_pred CchhhHHhh
Q 023218 263 NLYGDIISD 271 (285)
Q Consensus 263 NlfGDILSD 271 (285)
|-.-|---.
T Consensus 338 NqLedAceh 346 (475)
T KOG3812|consen 338 NQLEDACEH 346 (475)
T ss_pred ccHHHHHHH
Confidence 987664333
No 97
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.44 E-value=1.6e+02 Score=23.85 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=48.1
Q ss_pred eEEEEEcC----CCccHHHHHHHHHHHHHcCCCeEEEEEeccceecC---------CCCCCcChhhHHHhhhcCeEEECC
Q 023218 42 ITATLFPG----DGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDP---------RTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 42 ~~IavipG----DGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~---------~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
+||.+|-| +|....+++++.+.++..+.++++ +++.....+ -....-..+..+.++++|+++++.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~--i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEV--IDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEE--EECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEE--EeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 36777754 478889999999999988655554 444331000 000111244678899999999875
Q ss_pred ccCCCCCCcCchhHHHhhhcCc
Q 023218 109 MATPIGKGHRSLNLTLRKELNL 130 (285)
Q Consensus 109 v~~p~~~~~~s~~~~LRk~ldl 130 (285)
|... .+....|..-||.
T Consensus 79 ---P~y~--~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 79 ---PVYN--GSVSGQLKNFLDR 95 (152)
T ss_dssp ---EEBT--TBE-HHHHHHHHT
T ss_pred ---cEEc--CcCChhhhHHHHH
Confidence 4322 1233456666664
No 98
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.29 E-value=4.4e+02 Score=22.99 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcC---CCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 54 PEIAESVKQVFRTAE---VPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 54 pEV~~aa~~VL~a~~---~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
.++.....+.++..+ ..+++...+.... +. -..+.++.+ ++.|+++..+..
T Consensus 15 ~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~----~~--~~~~~~~~l~~~~vDgiii~~~~ 70 (274)
T cd06311 15 AGIVWHAQAAAKKLEAAYPDVEFILVTASND----TE--QQNAQQDLLINRKIDALVILPFE 70 (274)
T ss_pred HHHHHHHHHHHHHhhhhCCCeEEEEEcCCCC----HH--HHHHHHHHHHHcCCCEEEEeCCC
Confidence 356666666666653 2344433332211 11 111223423 358999887653
No 99
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.74 E-value=4.4e+02 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHHcCCCeEE
Q 023218 53 GPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 53 GpEV~~aa~~VL~a~~~~ie~ 73 (285)
-.++.....+.++..+..+.+
T Consensus 14 ~~~~~~gi~~~~~~~gy~v~~ 34 (269)
T cd06293 14 FAELADAVEEEADARGLSLVL 34 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 345677777777777766654
No 100
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=25.69 E-value=4.3e+02 Score=25.11 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEEE---cCC-ccccccHHHHHHHHHHHHhCCCcccee-eeHHHHHHH------H
Q 023218 182 TRQASLRVAEYAFHYAKTHG-RERVSAIH---KAN-IMQKTDGLFLKCCREVAEKYPEITYEE-VVIDNCCMM------L 249 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~---KaN-vl~~t~glf~~~~~eva~~ypdV~~~~-~~vDa~~~~------L 249 (285)
|-+.--.|+..|.++|+.-| ..||-+.. |.| -.+ +...-++.++-+.+.+|+..++= +..|++.-. .
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~-~~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~ 251 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGP-EVDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKA 251 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCC-cHHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhC
Confidence 45566677888889998654 34555543 333 233 33456666666666789988874 667876422 2
Q ss_pred HhCC--CCccEEEeCCch-hhHHhhhhhhccCC
Q 023218 250 VKNP--AAFDVLVMPNLY-GDIISDLCAGLIGG 279 (285)
Q Consensus 250 v~~P--~~fDVIVt~Nlf-GDILSDlaa~l~Gg 279 (285)
..+| ++-||+|.||+- |+|+--+...+.|+
T Consensus 252 ~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 252 PGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred CCCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 2233 356999999986 77776665555544
No 101
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=25.61 E-value=98 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEE
Q 023218 182 TRQASLRVAEYAFHYAKTHGRERVSAIH 209 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~~~~Vt~v~ 209 (285)
-.+.+++.+++|+++|+.. ..+|+++|
T Consensus 11 ~~~~~~~al~~a~~la~~~-~~~i~~l~ 37 (140)
T PF00582_consen 11 GSEESRRALRFALELAKRS-GAEITLLH 37 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhh-CCeEEEEE
Confidence 3466789999999999986 46676665
No 102
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.36 E-value=4.3e+02 Score=22.51 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=16.7
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 50 DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 50 DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.-..++...+.+.++..+..+.+
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~ 34 (267)
T cd01536 11 NPFWQAMNKGAEAAAKELGVELIV 34 (267)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEE
Confidence 456677888888888776655554
No 103
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.90 E-value=4.4e+02 Score=22.56 Aligned_cols=75 Identities=12% Similarity=-0.015 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC-CCcc---c---eeeeHHHHHHHHHhCCCCccEEEe
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEIT---Y---EEVVIDNCCMMLVKNPAAFDVLVM 261 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y-pdV~---~---~~~~vDa~~~~Lv~~P~~fDVIVt 261 (285)
..+.|.++..++|.++|.++.-. --.....-+.+-|.+..+++ .++. . +..-......+++++....|+|+|
T Consensus 102 ~g~~~~~~l~~~g~~~i~~i~~~-~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 180 (266)
T cd06278 102 AGRLAAELLLAKGCRRIAFIGGP-ADTSTSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDAIFC 180 (266)
T ss_pred HHHHHHHHHHHCCCceEEEEcCC-CcccchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34445555556677788887521 11112222334444433332 1111 1 111122334455554336899998
Q ss_pred CCc
Q 023218 262 PNL 264 (285)
Q Consensus 262 ~Nl 264 (285)
.|=
T Consensus 181 ~~~ 183 (266)
T cd06278 181 AND 183 (266)
T ss_pred cCc
Confidence 873
No 104
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=24.90 E-value=1.1e+02 Score=25.38 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEE
Q 023218 49 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLK 106 (285)
Q Consensus 49 GDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~ 106 (285)
=||+|+.|+++-.+ ...+-+++..+.|. .+.+.+..+.++|.+++
T Consensus 13 DDG~G~~v~~~L~~----~~~~~~v~~id~gt---------~~~~l~~~l~~~d~vIi 57 (146)
T cd06063 13 DDGVGPILIRRLQA----YLLPPHVRLVDCGT---------AGMEVMFRARGAKQLII 57 (146)
T ss_pred cCcHHHHHHHHHhh----cCCCCCeEEEECCC---------CHHHHHHHhcCCCEEEE
Confidence 38999999887654 22333344455543 24555577778877765
No 105
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=24.60 E-value=2.6e+02 Score=26.62 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccce-eeeH---------HHHH-
Q 023218 178 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYE-EVVI---------DNCC- 246 (285)
Q Consensus 178 ~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~-~~~v---------Da~~- 246 (285)
+...+.....-+++++ .+.+.|+|.+++-.+.. +.-|.+.+++.++++ ++++- .... |.-.
T Consensus 108 ~~~~~~~~~~ala~~~----~~~g~kkvaii~~~~~~---g~~~~~~~~~~~~~~-G~~vv~~~~~~~~~~~~~~d~s~~ 179 (347)
T TIGR03863 108 TLPSRAMLADALAQYL----AAKRWRRILLIQGPLPA---DALYADAFRRSAKRF-GAKIVAERPFTFSGDPRRTDQSEV 179 (347)
T ss_pred ecCChHhHHHHHHHHH----HHcCCCEEEEEeCCCcc---cHHHHHHHHHHHHHC-CCEEEEeEEeccCCchhhhhcccC
Confidence 3444445555555553 34456889999866654 355667777777665 32221 1111 2110
Q ss_pred HHHHhCCCCccEEEeCCchhh
Q 023218 247 MMLVKNPAAFDVLVMPNLYGD 267 (285)
Q Consensus 247 ~~Lv~~P~~fDVIVt~NlfGD 267 (285)
..+.+. .+.|||+..+.-||
T Consensus 180 ~~~~~~-s~pDvv~~~~~~~~ 199 (347)
T TIGR03863 180 PLFTQG-ADYDVVVVADEAGE 199 (347)
T ss_pred ceeecC-CCCCEEEEecchhh
Confidence 234444 77899998777444
No 106
>PRK09701 D-allose transporter subunit; Provisional
Probab=24.04 E-value=5.5e+02 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=33.5
Q ss_pred eEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCc
Q 023218 42 ITATLFPGD---GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (285)
Q Consensus 42 ~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav 109 (285)
.+|+++.-| .--.++.....+.++..+..+.+...+... ..+. ..+.++.+ ++.|++++-+.
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~----~~~~--~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG----DFQS--QLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCC----CHHH--HHHHHHHHHHcCCCEEEEeCC
Confidence 478888643 344567777777777777666653222111 0010 11223443 35798888664
No 107
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.83 E-value=1.7e+02 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=18.9
Q ss_pred eEEEEEcCCCcc---HHHHHHHHHHHHHcCCCeEE
Q 023218 42 ITATLFPGDGIG---PEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 42 ~~IavipGDGIG---pEV~~aa~~VL~a~~~~ie~ 73 (285)
++|+||=-|=-- .+++....+.++..|..+-+
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l 36 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLL 36 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEE
Confidence 345555333332 46777777777777766544
No 108
>COG4678 Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]
Probab=23.39 E-value=1.4e+02 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=39.8
Q ss_pred hCCCCcEEEEEcCCccccc-cHH---HHHHHHHHHHhCCCccceeeeHHHHHHHHHhC
Q 023218 199 THGRERVSAIHKANIMQKT-DGL---FLKCCREVAEKYPEITYEEVVIDNCCMMLVKN 252 (285)
Q Consensus 199 ~r~~~~Vt~v~KaNvl~~t-~gl---f~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~ 252 (285)
++.++.||+..+.|-.+.| -|. -..+..+.+..|-=..++..+=|+++.+-+++
T Consensus 69 ~HP~~~v~i~~~~ng~cSTAAGrYQ~L~~tW~~~~~~l~l~dF~P~~QD~va~~~i~d 126 (180)
T COG4678 69 DHPRKCVTIPTGPNGLCSTAAGRYQLLNRTWDDYAPQLHLKDFSPESQDAVAYRWIRD 126 (180)
T ss_pred hCChhhEEeecCCCCccccchhhHHHHHhHHHHhhhhcCcccCChhhhhHHHHHHHHh
Confidence 4578889999998755433 343 34566677777654779999999999999988
No 109
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=2e+02 Score=22.84 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=34.9
Q ss_pred CcEEEEEc-CCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCC
Q 023218 203 ERVSAIHK-ANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 203 ~~Vt~v~K-aNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~N 263 (285)
++++++|= +.=.. .+..-.-.+.+++.+||++.+=+.-||. ++.+. ..|.|..+|.
T Consensus 21 ~kliVvdF~a~wCg-PCk~i~P~~~~La~~y~~v~Flkvdvde-~~~~~---~~~~V~~~PT 77 (106)
T KOG0907|consen 21 DKLVVVDFYATWCG-PCKAIAPKFEKLAEKYPDVVFLKVDVDE-LEEVA---KEFNVKAMPT 77 (106)
T ss_pred CCeEEEEEECCCCc-chhhhhhHHHHHHHHCCCCEEEEEeccc-CHhHH---HhcCceEeeE
Confidence 45666652 22221 3445555778889999999988899998 44444 3355555554
No 110
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.30 E-value=4.8e+02 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=12.0
Q ss_pred HHHHhCCCCccEEEeCCch
Q 023218 247 MMLVKNPAAFDVLVMPNLY 265 (285)
Q Consensus 247 ~~Lv~~P~~fDVIVt~Nlf 265 (285)
..+.+....+|.|+|.|-.
T Consensus 170 ~~~l~~~~~~~~i~~~~~~ 188 (268)
T cd06289 170 AQLLDLPPRPTAIVCFNDL 188 (268)
T ss_pred HHHHcCCCCCCEEEEcCcH
Confidence 3444443468988888754
No 111
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.24 E-value=95 Score=25.00 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=41.1
Q ss_pred eEEEEEcCCCcc-HHHHHHHHHHHHHcCCCeEEEEEeccceecC-C-------CCCCcChhhHHHhhhcCeEEE-CC
Q 023218 42 ITATLFPGDGIG-PEIAESVKQVFRTAEVPVEWEEHYVGTEIDP-R-------TQSFLTWESLESVRRNKVGLK-GP 108 (285)
Q Consensus 42 ~~IavipGDGIG-pEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~-~-------~~~~lp~e~~~~ik~~daiL~-Ga 108 (285)
.|.++|-|.|+. .+..++..++.+..+.|+ +... .|....+ . .+..-.....+.++++|.+|. |.
T Consensus 12 ~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv-~~t~-~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~ 86 (137)
T PF00205_consen 12 KRPVILAGRGARRSGAAEELRELAEKLGIPV-ATTP-MGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGT 86 (137)
T ss_dssp SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEE-EEEG-GGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESS
T ss_pred CCEEEEEcCCcChhhHHHHHHHHHHHHCCCE-EecC-ccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECC
Confidence 466778888765 568888999999999888 3333 3322211 1 111125667788899999975 54
No 112
>PRK00811 spermidine synthase; Provisional
Probab=23.15 E-value=2e+02 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=15.3
Q ss_pred cceeeeHHHHHHHHHhCCCCccEEEeC
Q 023218 236 TYEEVVIDNCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 236 ~~~~~~vDa~~~~Lv~~P~~fDVIVt~ 262 (285)
.++-..-|+. ..+-..+++||+|++.
T Consensus 132 rv~v~~~Da~-~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 132 RVELVIGDGI-KFVAETENSFDVIIVD 157 (283)
T ss_pred ceEEEECchH-HHHhhCCCcccEEEEC
Confidence 3444455543 3444456789999874
No 113
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=22.98 E-value=1.2e+02 Score=24.87 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEE
Q 023218 185 ASLRVAEYAFHYAKTHGRERVSAIH 209 (285)
Q Consensus 185 ~~eRIar~AFe~A~~r~~~~Vt~v~ 209 (285)
-++.|++.+-++|++++.++||.|+
T Consensus 6 la~aii~~i~~~A~~~~a~~V~~V~ 30 (115)
T COG0375 6 LAQAIIELIEEQAEKHGAKRVTAVW 30 (115)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3678999999999999988888875
No 114
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=22.83 E-value=86 Score=23.16 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=20.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCcE
Q 023218 179 KIITRQASLRVAEYAFHYAKTHGRERV 205 (285)
Q Consensus 179 ~~~Tr~~~eRIar~AFe~A~~r~~~~V 205 (285)
.-++..=++.+++.|.++|+.|+++.|
T Consensus 29 ~~~~e~fv~~v~~~a~~lAkHr~~~tv 55 (72)
T cd07981 29 LEIADDFVDDVVEDACRLAKHRKSDTL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 335566788999999999998876653
No 115
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=22.61 E-value=2.5e+02 Score=25.87 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCch
Q 023218 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLY 265 (285)
Q Consensus 192 ~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nlf 265 (285)
.++.+|++ + .+||.+|.+..+ .+.+++.+++ .++.++-...|.-...+ ++.||+|++...|
T Consensus 134 ~~~~la~~-g-~~V~avD~s~~a-------i~~~~~~~~~-~~l~v~~~~~D~~~~~~---~~~fD~I~~~~vl 194 (287)
T PRK12335 134 NSLYLALL-G-FDVTAVDINQQS-------LENLQEIAEK-ENLNIRTGLYDINSASI---QEEYDFILSTVVL 194 (287)
T ss_pred HHHHHHHC-C-CEEEEEECCHHH-------HHHHHHHHHH-cCCceEEEEechhcccc---cCCccEEEEcchh
Confidence 45555654 4 679999865433 2223333332 12334444445433333 6789999988654
No 116
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=22.22 E-value=1.3e+02 Score=26.64 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 191 EYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 191 r~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
|-|+=+|++ | -.||++|++-+- .+...++|++ .+++++-...|--...+ |+.||+|+++-.|.
T Consensus 43 RNalyLA~~-G-~~VtAvD~s~~a-------l~~l~~~a~~-~~l~i~~~~~Dl~~~~~---~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 43 RNALYLASQ-G-FDVTAVDISPVA-------LEKLQRLAEE-EGLDIRTRVADLNDFDF---PEEYDFIVSTVVFM 105 (192)
T ss_dssp HHHHHHHHT-T--EEEEEESSHHH-------HHHHHHHHHH-TT-TEEEEE-BGCCBS----TTTEEEEEEESSGG
T ss_pred HHHHHHHHC-C-CeEEEEECCHHH-------HHHHHHHHhh-cCceeEEEEecchhccc---cCCcCEEEEEEEec
Confidence 456677766 4 579999976543 2234555554 35566666666322222 57899998865443
No 117
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=22.14 E-value=5.2e+02 Score=22.55 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=17.1
Q ss_pred CCccHHHHHHHHHHHHHcCCCeEEE
Q 023218 50 DGIGPEIAESVKQVFRTAEVPVEWE 74 (285)
Q Consensus 50 DGIGpEV~~aa~~VL~a~~~~ie~~ 74 (285)
|-.-.+++....+.++..+..+.+.
T Consensus 16 ~~~~~~~~~gi~~~~~~~g~~~~~~ 40 (270)
T cd01544 16 DPYYLSIRLGIEKRAQELGIELTKF 40 (270)
T ss_pred CccHHHHHHHHHHHHHHcCCEEEEE
Confidence 4445677778888888877666553
No 118
>cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold. HcaR, a member of the LysR family of transcriptional regulators, controls the expression of the hcA1, A2, B, C, and D operon, encoding for the 3-phenylpropionate dioxygenase complex and 3-phenylpropionate-2',3'-dihydrodiol dehydrogenase, that oxidizes 3-phenylpropionate to 3-(2,3-dihydroxyphenyl) propionate. Dioxygenases play an important role in protecting the cell against the toxic effects of dioxygen. The expression of hcaR is negatively auto-regulated, as for other members of the LysR family, and is strongly repressed in the presence of glucose. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, an
Probab=22.11 E-value=1.7e+02 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHHH-HHHHHHhCCCCccEEEe
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVIDN-CCMMLVKNPAAFDVLVM 261 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vDa-~~~~Lv~~P~~fDVIVt 261 (285)
.++-+...++.+.||+|+++-..-.. -..+.+.+ +++|+.++
T Consensus 13 ~~l~~~l~~~~~~~P~i~l~i~~~~~~~~~~~l~~-~~~Dl~i~ 55 (196)
T cd08450 13 QWLPEVLPILREEHPDLDVELSSLFSPQLAEALMR-GKLDVAFM 55 (196)
T ss_pred hhHHHHHHHHHhhCCCcEEEEEecChHHHHHHHhc-CCccEEEE
Confidence 45667888889999999988765322 22234443 57787664
No 119
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=22.05 E-value=1.2e+02 Score=31.81 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred CCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEE-cCCccccccH---------HHHHHHHHHHHhCCCccce
Q 023218 172 RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIH-KANIMQKTDG---------LFLKCCREVAEKYPEITYE 238 (285)
Q Consensus 172 ~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~-KaNvl~~t~g---------lf~~~~~eva~~ypdV~~~ 238 (285)
.+..++..+++.+.-..+.+...+-|++.+ -+.++| |+.-||.+|- +|.++|++.++.+..+-++
T Consensus 214 ~gEviDat~Ms~~aL~~F~~~~i~~AK~~~--vLfSlHlKATMMKVSDPIiFGhaV~v~f~~vF~k~~~~~~~~Gvn 288 (735)
T PF03971_consen 214 AGEVIDATFMSAKALRAFYEEQIEDAKEEG--VLFSLHLKATMMKVSDPIIFGHAVKVFFKDVFEKHGDTFKELGVN 288 (735)
T ss_dssp TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT---EEEE-B-TTTSTTHHHHHHHHHHHHHCHHHHHHCHHHHHHCT-S
T ss_pred CCcEeehhhccHHHHHHHHHHHHHHHHhcC--CeEEeeehhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHcCCC
No 120
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.02 E-value=5.3e+02 Score=22.45 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEE-cCCccccccHHHHHHHHHHHHhCCCccceeee----HH---HHHHHHHhCCC
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV----ID---NCCMMLVKNPA 254 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~-KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~----vD---a~~~~Lv~~P~ 254 (285)
.+....++++..+. +|++++.++. ..+.. ....+.+-+.+..++| ++..+... .+ ..+.+++....
T Consensus 109 ~~~g~~~~~~l~~~---~g~~~i~~i~g~~~~~--~~~~r~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (271)
T cd06312 109 YAAGEAAGERLAEL---KGGKNVLCVIHEPGNV--TLEDRCAGFADGLGGA-GITEEVIETGADPTEVASRIAAYLRANP 182 (271)
T ss_pred HHHHHHHHHHHHHh---cCCCeEEEEecCCCCc--cHHHHHHHHHHHHHhc-CceeeEeecCCCHHHHHHHHHHHHHhCC
Confidence 44555555555443 4667776664 12221 2234445555555555 33322111 11 23334444333
Q ss_pred CccEEEeCC
Q 023218 255 AFDVLVMPN 263 (285)
Q Consensus 255 ~fDVIVt~N 263 (285)
.+|.|+|.|
T Consensus 183 ~~~aI~~~~ 191 (271)
T cd06312 183 DVDAVLTLG 191 (271)
T ss_pred CccEEEEeC
Confidence 689888887
No 121
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA bin
Probab=21.87 E-value=2.1e+02 Score=22.13 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHHH-HHHHHHhCCCCccEEEeC
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVIDN-CCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vDa-~~~~Lv~~P~~fDVIVt~ 262 (285)
.++.+...++.++||+++++-...+. -+.+.+.+ +++|+.++.
T Consensus 13 ~~l~~~i~~~~~~~p~i~i~~~~~~~~~~~~~l~~-g~~D~~i~~ 56 (197)
T cd05466 13 YLLPPLLAAFRQRYPGVELSLVEGGSSELLEALLE-GELDLAIVA 56 (197)
T ss_pred HHhHHHHHHHHHHCCCCEEEEEECChHHHHHHHHc-CCceEEEEc
Confidence 45667777888899999888776543 22333433 558877764
No 122
>PRK08051 fre FMN reductase; Validated
Probab=21.72 E-value=5.5e+02 Score=22.50 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceee-------------eHHHHHHHHHhCCCCccEEEeCCc
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV-------------VIDNCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~-------------~vDa~~~~Lv~~P~~fDVIVt~Nl 264 (285)
.++|++++=+.-- .+-+|.+.+++++++|++.++... +++........++...||.+|.+-
T Consensus 130 ~~~v~l~~g~r~~--~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~vyicGp~ 203 (232)
T PRK08051 130 NRPITLYWGGREE--DHLYDLDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDFGSLAEYDIYIAGRF 203 (232)
T ss_pred CCcEEEEEEeccH--HHhhhhHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhhccCcccCEEEEECCH
Confidence 4567776643322 345778899999998887554332 222222222224566788888764
No 123
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=21.62 E-value=5.6e+02 Score=22.58 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCc
Q 023218 55 EIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (285)
Q Consensus 55 EV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav 109 (285)
++.+...+.++..|.++.+..+..+.+.. ... ..+.++.+ ++.|++++.+.
T Consensus 17 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~--~~~--~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 17 RNIASFTARLEELNIPYELTQFSSRPGID--HRL--QSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccCcccC--HHH--HHHHHHHHHHcCCCEEEEcCC
Confidence 44555556666667666654333221110 010 11222322 46899887653
No 124
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=21.57 E-value=3.7e+02 Score=21.61 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCcEEEEEcCCc-----cccccHHH--------H--HHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCc
Q 023218 192 YAFHYAKTHGRERVSAIHKANI-----MQKTDGLF--------L--KCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAF 256 (285)
Q Consensus 192 ~AFe~A~~r~~~~Vt~v~KaNv-----l~~t~glf--------~--~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~f 256 (285)
.|-.+++. |-++++++|...+ -++. ++ + -..+++.+-+|+++++....+--..........|
T Consensus 14 ia~~L~~~-Gv~~i~ivD~d~v~~~nl~r~~--~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~~~~ 90 (143)
T cd01483 14 IALNLARS-GVGKITLIDFDTVELSNLNRQF--LARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFLDGV 90 (143)
T ss_pred HHHHHHHC-CCCEEEEEcCCCcCcchhhccc--cCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHhcCC
Confidence 34455555 6778999976533 2211 11 1 1123344457887775543221111113334579
Q ss_pred cEEEeCCch
Q 023218 257 DVLVMPNLY 265 (285)
Q Consensus 257 DVIVt~Nlf 265 (285)
|+||...-.
T Consensus 91 diVi~~~d~ 99 (143)
T cd01483 91 DLVIDAIDN 99 (143)
T ss_pred CEEEECCCC
Confidence 988765443
No 125
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=21.50 E-value=2.4e+02 Score=26.92 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.4
Q ss_pred cChhhHHHhhhcCeEEECC
Q 023218 90 LTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 90 lp~e~~~~ik~~daiL~Ga 108 (285)
..++++++++++|.|++||
T Consensus 164 ~~~~~l~AI~~ADlIvlgP 182 (309)
T cd07044 164 PSREVLEAIEKADNIVIGP 182 (309)
T ss_pred CCHHHHHHHHhCCEEEECC
Confidence 3567789999999999998
No 126
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=21.44 E-value=3.4e+02 Score=24.78 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCcc---HHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 40 TPITATLFPGDGIG---PEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 40 ~~~~IavipGDGIG---pEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
+..+|++||=.+.. .+-++...+.++.+|+.+.. .+. . ++..+.+.++|+++++-
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~--l~~-------~-----~d~~~~l~~ad~I~v~G 87 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG--IHR-------V-----ADPVAAIENAEAIFVGG 87 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ecc-------c-----hhhHHHHhcCCEEEECC
Confidence 45789999977654 55678888999998876553 221 1 22348899999998763
No 127
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=21.35 E-value=1.5e+02 Score=25.65 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=11.3
Q ss_pred CCCccEEEeCCchhh
Q 023218 253 PAAFDVLVMPNLYGD 267 (285)
Q Consensus 253 P~~fDVIVt~NlfGD 267 (285)
|..||+|++.+++..
T Consensus 65 ~~~fD~I~~~~~l~~ 79 (224)
T smart00828 65 PDTYDLVFGFEVIHH 79 (224)
T ss_pred CCCCCEeehHHHHHh
Confidence 567898888877753
No 128
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.12 E-value=5e+02 Score=22.59 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHcCC----CeEEEEEec
Q 023218 53 GPEIAESVKQVFRTAEV----PVEWEEHYV 78 (285)
Q Consensus 53 GpEV~~aa~~VL~a~~~----~ie~~~~~~ 78 (285)
--++.....+.++..+. ++++...+.
T Consensus 13 ~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~ 42 (281)
T cd06325 13 LDAARKGFKDGLKEAGYKEGKNVKIDYQNA 42 (281)
T ss_pred hHHHHHHHHHHHHHhCccCCceEEEEEecC
Confidence 34677777777777653 466555543
No 129
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=21.10 E-value=3.6e+02 Score=20.11 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCCcEEEEEcCCccccccHHHHHHHHHHHHhCCC-ccc------------eeeeHHHHH-HHHHh---CCCCccEEEeCC
Q 023218 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPE-ITY------------EEVVIDNCC-MMLVK---NPAAFDVLVMPN 263 (285)
Q Consensus 201 ~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypd-V~~------------~~~~vDa~~-~~Lv~---~P~~fDVIVt~N 263 (285)
..++|++++=+.-. .+-+|++..+++++++|. +.+ ..-+|+... .++.. ++....|.+|.+
T Consensus 23 ~~~~v~l~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp 100 (109)
T PF00175_consen 23 DNRKVTLFYGARTP--EDLLFRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKIDPDDTHVYICGP 100 (109)
T ss_dssp CTSEEEEEEEESSG--GGSTTHHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCCCEEEEEEEccc--ccccchhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhcccccCCCCCEEEEECC
Confidence 45788888755444 356899999999998886 222 122455444 55555 566777888753
No 130
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=21.01 E-value=3.1e+02 Score=21.52 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHH
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNC 245 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~ 245 (285)
|+-+.+.++.-|......+.- .+.....++++++++||++.+-..-+|..
T Consensus 15 ~~~~i~~~~~vvV~f~a~~c~--~C~~~~p~l~~la~~~~~i~f~~Vd~~~~ 64 (113)
T cd02989 15 FFEIVKSSERVVCHFYHPEFF--RCKIMDKHLEILAKKHLETKFIKVNAEKA 64 (113)
T ss_pred HHHHHhCCCcEEEEEECCCCc--cHHHHHHHHHHHHHHcCCCEEEEEEcccC
Confidence 444444444444445544444 46788889999999999987766666653
No 131
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=21.00 E-value=6.1e+02 Score=23.22 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=18.8
Q ss_pred CceEEEEEcCC---CccHHHHHHHHHHHHHcCCCe
Q 023218 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPV 71 (285)
Q Consensus 40 ~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~i 71 (285)
+...|+++-.| .--.+++....+.++..+..+
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~ 92 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFL 92 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEE
Confidence 45788887543 233455566666666656544
No 132
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.00 E-value=1.3e+02 Score=27.93 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=42.5
Q ss_pred CCCC-CcChhhHHHhhh--cCeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCC-CCCccEEEEc--cC
Q 023218 85 RTQS-FLTWESLESVRR--NKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR-YDDVNLITIR--EN 158 (285)
Q Consensus 85 ~~~~-~lp~e~~~~ik~--~daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~-~~~vD~vIvR--En 158 (285)
.|++ ..++|.++.+.+ +|+++.|-...-.........-++|...|+ ||-.+||-.+. .+..|.++|= =|
T Consensus 23 DP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~l-----PvilfP~~~~~is~~aDavff~svLN 97 (240)
T COG1646 23 DPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDL-----PVILFPGSPSGISPYADAVFFPSVLN 97 (240)
T ss_pred CcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCC-----CEEEecCChhccCccCCeEEEEEEec
Confidence 3444 567777777765 599999864422211122345678878887 55556654322 2456765543 35
Q ss_pred CCCccc
Q 023218 159 TEGEYS 164 (285)
Q Consensus 159 teG~Y~ 164 (285)
+...|.
T Consensus 98 S~n~~~ 103 (240)
T COG1646 98 SDNPYW 103 (240)
T ss_pred CCCccc
Confidence 555554
No 133
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=20.99 E-value=4e+02 Score=22.87 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHh--CCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhh
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGD 267 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~--ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGD 267 (285)
..+|+..+..+||.+|.+--+ .+.+++.+++ .++|++ +.-|.. .+ .....||+|++.. +++
T Consensus 58 ~~la~~~~~~~V~~iD~s~~~-------~~~a~~~~~~~~~~~i~~--i~~d~~--~~-~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 58 IPLAIARPELKLTLLESNHKK-------VAFLREVKAELGLNNVEI--VNGRAE--DF-QHEEQFDVITSRA-LAS 120 (181)
T ss_pred HHHHHHCCCCeEEEEeCcHHH-------HHHHHHHHHHhCCCCeEE--Eecchh--hc-cccCCccEEEehh-hhC
Confidence 444544444679999865433 2223333333 334433 333432 22 2356899888754 544
No 134
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=20.94 E-value=1.6e+02 Score=24.33 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEE
Q 023218 49 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLK 106 (285)
Q Consensus 49 GDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~ 106 (285)
=||+|+.|.+.-.+.. ..+-+++-++.|. .+.+.++.+.++|.+++
T Consensus 13 DDG~G~~va~~L~~~~---~~~~~v~vi~~~~---------~~~~l~~~l~~~d~vii 58 (146)
T cd06062 13 DEGIGVHAVERLEENY---SFPENVELIDGGT---------LGLELLPYIEEADRLII 58 (146)
T ss_pred cCcHHHHHHHHHHHhc---CCCCCeEEEECCC---------CHHHHHHHHhcCCEEEE
Confidence 3899999988764431 3333454555543 24455577778887765
No 135
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=20.84 E-value=1.2e+02 Score=24.82 Aligned_cols=45 Identities=29% Similarity=0.380 Sum_probs=27.7
Q ss_pred CCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEE
Q 023218 49 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLK 106 (285)
Q Consensus 49 GDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~ 106 (285)
=||+|+.|++.-.+-.. +-+++-++.|. .+.+.+..++++|.+++
T Consensus 12 DDGvG~~v~~~L~~~~~----~~~v~~id~gt---------~~~~l~~~l~~~d~vii 56 (139)
T cd00518 12 DDGFGPAVAERLEERYL----PPGVEVIDGGT---------LGLELLDLLEGADRVII 56 (139)
T ss_pred cCcHHHHHHHHHHhcCC----CCCeEEEECCC---------CHHHHHHHHhcCCeEEE
Confidence 38999999887654321 22333444443 34555688888888765
No 136
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=20.71 E-value=3e+02 Score=25.92 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHH-HHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-h-CCCccceeeeHHHHH-HHHHhCCCCccEEEe
Q 023218 193 AFHY-AKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-K-YPEITYEEVVIDNCC-MMLVKNPAAFDVLVM 261 (285)
Q Consensus 193 AFe~-A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~-ypdV~~~~~~vDa~~-~~Lv~~P~~fDVIVt 261 (285)
+|-+ |...|-+.||.||.+ .-..+++++=++ + ++.-..+..--|..- +.-+++..+||+||+
T Consensus 136 gfsv~Aa~gGA~~v~~VD~S-------~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 136 GFSVAAAAGGAKEVVSVDSS-------KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp HHHHHHHHTTESEEEEEES--------HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHCCCCEEEEEeCC-------HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3444 344466789999843 455566666443 2 222233444445543 222456679998876
No 137
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=20.71 E-value=4.5e+02 Score=22.82 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccce---------------eeeHHHHHHHHHhCCCCccEEEeCC
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYE---------------EVVIDNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~---------------~~~vDa~~~~Lv~~P~~fDVIVt~N 263 (285)
+++|++++=..- ..+-+|++.+++.+++++.+.+. ..+++....+++.++...+|.+|.+
T Consensus 131 ~~~v~l~~~~r~--~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~CGp 205 (232)
T cd06212 131 DRPVRFFYGART--ARDLFYLEEIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRNEATLAGCDVYLCGP 205 (232)
T ss_pred CCcEEEEEeccc--hHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhhccCccCCEEEEECC
Confidence 456877763221 13456788888888777765442 2245554455566666677888865
No 138
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold. This CD includes the C-terminal of LysR-type transcription regulators, BenM, CatM, and CatR, which are involved in the benzoate catabolism. The BenM and CatM are paralogs with overlapping functions. BenM responds synergistically to two effectors, benzoate and cis,cis-muconate, to activate expression of the benABCDE operon which is involved in benzoate catabolism, while CatM responses only to muconate. BenM and CatM share high protein sequence identity and bind to the operator-promoter regions that have similar DNA sequences. In Pseudomonas species, phenolic compounds are converted by different enzymes to central intermediates, such as protocatechuate and catechols. Generally, unsubstituted compounds, such as benzoate, are metabolized by an ortho-cleavage pathway. The catBCA operon encodes three enzymes
Probab=20.36 E-value=2e+02 Score=23.21 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCccceeeeH--HHHHHHHHhCCCCccEEEeC
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVI--DNCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~v--Da~~~~Lv~~P~~fDVIVt~ 262 (285)
.++-....++.++||+|+++-... +....+|. + +++|+.++.
T Consensus 14 ~~l~~~l~~~~~~~P~i~l~i~~~~~~~~~~~l~-~-~~~Dl~i~~ 57 (203)
T cd08445 14 GLLPELIRRFRQAAPDVEIELIEMTTVQQIEALK-E-GRIDVGFGR 57 (203)
T ss_pred hHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHH-c-CCCcEEEec
Confidence 466778888889999988886643 33334333 3 567776653
No 139
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.35 E-value=77 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=18.4
Q ss_pred EEEEEcCC--CccHHHHHHHHHHHHH
Q 023218 43 TATLFPGD--GIGPEIAESVKQVFRT 66 (285)
Q Consensus 43 ~IavipGD--GIGpEV~~aa~~VL~a 66 (285)
||+||.|- |||..++++-++-+..
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~~~ 26 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKELPE 26 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhCCC
Confidence 68999665 5999999887776543
No 140
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.32 E-value=5.7e+02 Score=22.12 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC-CCccceeee-----HHHHHHHHHhCC-CCccEEEeC
Q 023218 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-PEITYEEVV-----IDNCCMMLVKNP-AAFDVLVMP 262 (285)
Q Consensus 190 ar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y-pdV~~~~~~-----vDa~~~~Lv~~P-~~fDVIVt~ 262 (285)
.+.|.++..++|.+++.++.-..-.. ......+-|.+..+++ .++...... -...+.+++.+. ..+|.|++.
T Consensus 106 ~~~a~~~l~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~ 184 (268)
T cd06277 106 AYAATEYLIEKGHRKIGFVGDPLYSP-SFEERYEGYKKALLDHGIPFNEDYDITEKEEDEEDIGKFIDELKPLPTAFFCS 184 (268)
T ss_pred HHHHHHHHHHCCCCcEEEECCCCCCc-chHHHHHHHHHHHHHcCCCCCcceEEEcchhHHHHHHHHHhcCCCCCCEEEEC
Confidence 44455555666778888774332211 1112223344444443 111111111 112334555542 458999998
Q ss_pred Cc
Q 023218 263 NL 264 (285)
Q Consensus 263 Nl 264 (285)
|-
T Consensus 185 ~d 186 (268)
T cd06277 185 ND 186 (268)
T ss_pred Cc
Confidence 73
No 141
>PRK04457 spermidine synthase; Provisional
Probab=20.04 E-value=3.7e+02 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCccEEEeC
Q 023218 243 DNCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 243 Da~~~~Lv~~P~~fDVIVt~ 262 (285)
.++...+-..|+.||+|+..
T Consensus 124 ~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 124 ADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCHHHHHHhCCCCCCEEEEe
Confidence 33444444556778888764
Done!