Query 023218
Match_columns 285
No_of_seqs 144 out of 1204
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0l_A Homoisocitrate dehydrog 100.0 2.6E-88 8.8E-93 638.5 23.7 243 41-285 1-245 (333)
2 3blx_B Isocitrate dehydrogenas 100.0 3.5E-88 1.2E-92 641.7 21.3 250 35-285 15-267 (354)
3 3flk_A Tartrate dehydrogenase/ 100.0 1.9E-87 6.6E-92 639.0 21.7 246 40-285 4-267 (364)
4 3ty4_A Probable homoisocitrate 100.0 4.6E-87 1.6E-91 636.0 23.0 251 32-285 2-278 (366)
5 3blx_A Isocitrate dehydrogenas 100.0 2E-87 6.7E-92 635.5 20.2 246 36-285 12-259 (349)
6 1w0d_A 3-isopropylmalate dehyd 100.0 9.3E-87 3.2E-91 629.0 22.2 243 42-285 2-254 (337)
7 3udu_A 3-isopropylmalate dehyd 100.0 2E-86 6.9E-91 630.6 20.6 245 38-285 3-266 (361)
8 3u1h_A 3-isopropylmalate dehyd 100.0 3.7E-86 1.3E-90 632.9 22.4 243 41-285 23-285 (390)
9 3vmk_A 3-isopropylmalate dehyd 100.0 4.8E-86 1.7E-90 630.7 21.4 246 38-285 10-278 (375)
10 2d1c_A Isocitrate dehydrogenas 100.0 3.2E-85 1.1E-89 640.5 27.5 246 40-285 18-266 (496)
11 1vlc_A 3-isopropylmalate dehyd 100.0 7.9E-86 2.7E-90 627.5 19.7 244 40-285 11-273 (366)
12 2y3z_A 3-isopropylmalate dehyd 100.0 3.3E-85 1.1E-89 622.3 21.9 243 40-285 2-262 (359)
13 1cnz_A IPMDH, IMDH, protein (3 100.0 4.2E-85 1.4E-89 623.1 20.3 243 41-285 4-269 (363)
14 1wpw_A 3-isopropylmalate dehyd 100.0 1.5E-84 5.2E-89 613.4 23.6 237 42-285 2-242 (336)
15 2iv0_A Isocitrate dehydrogenas 100.0 1.3E-84 4.4E-89 628.1 22.9 245 41-285 27-319 (412)
16 3dms_A Isocitrate dehydrogenas 100.0 8E-85 2.7E-89 632.0 21.1 246 40-285 35-335 (427)
17 3r8w_A 3-isopropylmalate dehyd 100.0 5.5E-85 1.9E-89 627.8 19.0 245 39-285 40-306 (405)
18 2e0c_A 409AA long hypothetical 100.0 2.1E-84 7.2E-89 626.5 23.1 246 40-285 23-316 (409)
19 2d4v_A Isocitrate dehydrogenas 100.0 1.2E-83 4E-88 623.8 24.8 246 40-285 25-338 (429)
20 1a05_A IPMDH, IMDH, 3-isopropy 100.0 5.8E-84 2E-88 614.5 20.6 241 42-285 2-264 (358)
21 1hqs_A Isocitrate dehydrogenas 100.0 1.8E-83 6.3E-88 621.8 21.9 246 40-285 18-329 (423)
22 1tyo_A Isocitrate dehydrogenas 100.0 2.7E-83 9.4E-88 622.1 22.2 245 40-285 34-329 (435)
23 3us8_A Isocitrate dehydrogenas 100.0 1.6E-79 5.4E-84 594.9 19.3 247 35-285 24-314 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 1.5E-78 5.1E-83 585.4 19.2 242 41-285 6-290 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 7.8E-77 2.7E-81 575.2 18.9 242 41-285 8-293 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 2.1E-76 7.3E-81 570.1 17.6 243 40-285 6-288 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 5.3E-76 1.8E-80 566.6 18.3 243 40-285 6-291 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 6.9E-74 2.4E-78 556.3 13.3 246 37-285 18-309 (427)
29 3l49_A ABC sugar (ribose) tran 74.9 7.8 0.00027 33.1 7.2 73 191-264 112-200 (291)
30 1e2b_A Enzyme IIB-cellobiose; 72.5 17 0.00057 27.8 7.8 70 40-129 2-72 (106)
31 4aty_A Terephthalate 1,2-CIS-d 71.1 2.4 8.2E-05 39.6 3.1 22 40-61 7-30 (349)
32 2af4_C Phosphate acetyltransfe 69.2 21 0.00073 32.6 9.1 92 181-272 178-284 (333)
33 1td9_A Phosphate acetyltransfe 67.5 29 0.001 31.6 9.7 93 181-273 179-285 (329)
34 3ksm_A ABC-type sugar transpor 62.4 14 0.00046 31.1 6.0 81 183-264 108-196 (276)
35 1r5j_A Putative phosphotransac 62.3 39 0.0013 30.8 9.5 94 181-274 183-290 (337)
36 4azs_A Methyltransferase WBDD; 62.2 21 0.00071 34.9 8.0 66 193-267 81-146 (569)
37 1vmi_A Putative phosphate acet 60.1 40 0.0014 31.2 9.2 91 181-272 185-291 (355)
38 4hc4_A Protein arginine N-meth 58.8 6.3 0.00022 37.0 3.4 58 198-269 102-162 (376)
39 3miz_A Putative transcriptiona 56.6 65 0.0022 27.4 9.5 41 32-73 5-49 (301)
40 2rjo_A Twin-arginine transloca 55.3 40 0.0014 29.4 8.0 72 191-263 123-205 (332)
41 2hi1_A 4-hydroxythreonine-4-ph 54.2 7.1 0.00024 36.3 2.9 75 180-261 181-268 (330)
42 2q62_A ARSH; alpha/beta, flavo 53.8 73 0.0025 27.7 9.4 84 40-130 33-123 (247)
43 3cis_A Uncharacterized protein 53.3 70 0.0024 27.7 9.3 104 149-263 153-275 (309)
44 3nbm_A PTS system, lactose-spe 53.0 44 0.0015 25.6 6.9 57 39-108 4-61 (108)
45 2fn9_A Ribose ABC transporter, 51.9 47 0.0016 28.0 7.8 80 182-263 107-199 (290)
46 3l6u_A ABC-type sugar transpor 51.5 32 0.0011 29.2 6.5 82 182-264 112-204 (293)
47 3d8u_A PURR transcriptional re 51.4 99 0.0034 25.6 9.7 34 40-73 2-38 (275)
48 3o74_A Fructose transport syst 50.1 45 0.0015 27.7 7.2 72 190-263 108-188 (272)
49 3dlo_A Universal stress protei 48.4 21 0.0007 28.1 4.5 27 183-210 35-61 (155)
50 2fhp_A Methylase, putative; al 48.3 70 0.0024 25.0 7.8 65 194-266 60-127 (187)
51 3kuu_A Phosphoribosylaminoimid 48.1 49 0.0017 27.9 6.9 38 36-73 7-44 (174)
52 3lxy_A 4-hydroxythreonine-4-ph 47.7 12 0.00042 34.8 3.4 80 179-265 178-271 (334)
53 3uf6_A LMO1369 protein; struct 45.7 1.4E+02 0.0047 26.8 10.1 205 39-278 16-252 (291)
54 3brq_A HTH-type transcriptiona 44.0 90 0.0031 26.1 8.3 34 40-73 18-56 (296)
55 2x7x_A Sensor protein; transfe 44.0 67 0.0023 27.9 7.6 63 201-264 127-197 (325)
56 3tb6_A Arabinose metabolism tr 43.7 82 0.0028 26.4 8.0 64 40-111 14-82 (298)
57 3lp6_A Phosphoribosylaminoimid 43.6 53 0.0018 27.7 6.4 34 40-73 6-39 (174)
58 3tsn_A 4-hydroxythreonine-4-ph 42.1 15 0.00052 34.6 3.1 20 41-60 4-25 (367)
59 2zqe_A MUTS2 protein; alpha/be 39.5 87 0.003 22.7 6.4 56 176-236 7-62 (83)
60 3egc_A Putative ribose operon 39.3 1.4E+02 0.0049 25.0 8.9 176 39-264 6-195 (291)
61 1gud_A ALBP, D-allose-binding 38.8 72 0.0025 27.1 6.8 32 42-73 2-36 (288)
62 1tvm_A PTS system, galactitol- 38.4 1.1E+02 0.0038 23.1 7.2 59 37-108 17-77 (113)
63 1yco_A Branched-chain phosphot 38.3 2E+02 0.0067 25.6 9.8 92 182-276 126-234 (279)
64 1tjy_A Sugar transport protein 38.1 1.5E+02 0.0053 25.4 9.1 63 200-263 126-197 (316)
65 1yxo_A 4-hydroxythreonine-4-ph 37.9 17 0.00059 33.7 2.7 75 180-261 174-262 (328)
66 3quf_A Extracellular solute-bi 37.3 84 0.0029 28.1 7.4 58 202-264 29-92 (414)
67 3i3v_A Probable secreted solut 36.5 98 0.0033 27.6 7.7 61 202-262 7-71 (405)
68 2rgy_A Transcriptional regulat 36.4 1.4E+02 0.0048 25.1 8.3 34 40-73 7-43 (290)
69 3trh_A Phosphoribosylaminoimid 36.3 73 0.0025 26.7 6.1 35 39-73 4-38 (169)
70 2h3h_A Sugar ABC transporter, 36.1 1.4E+02 0.0047 25.5 8.3 32 42-73 2-35 (313)
71 3k01_A Acarbose/maltose bindin 35.6 34 0.0012 30.8 4.4 60 202-263 27-92 (412)
72 2ioy_A Periplasmic sugar-bindi 35.5 1.5E+02 0.0052 24.8 8.4 60 202-263 123-191 (283)
73 3gbv_A Putative LACI-family tr 35.5 1.9E+02 0.0065 24.1 9.0 67 39-110 6-79 (304)
74 3c3k_A Alanine racemase; struc 35.2 1.6E+02 0.0054 24.7 8.5 34 40-73 7-43 (285)
75 3fdx_A Putative filament prote 35.2 41 0.0014 25.2 4.2 26 186-212 16-41 (143)
76 3qk7_A Transcriptional regulat 34.5 1.8E+02 0.0061 24.6 8.7 63 39-110 4-75 (294)
77 3gv0_A Transcriptional regulat 34.3 1.5E+02 0.0052 24.9 8.2 74 189-263 114-196 (288)
78 2rk3_A Protein DJ-1; parkinson 34.2 81 0.0028 25.7 6.2 67 41-107 3-73 (197)
79 3d02_A Putative LACI-type tran 34.1 1.1E+02 0.0036 25.9 7.2 32 40-71 3-37 (303)
80 1dbq_A Purine repressor; trans 34.0 2E+02 0.0069 23.8 9.5 35 39-73 5-42 (289)
81 1ws6_A Methyltransferase; stru 34.0 1.4E+02 0.0049 22.6 7.4 64 193-266 56-121 (171)
82 3m9w_A D-xylose-binding peripl 33.3 2.1E+02 0.0073 24.2 9.1 62 41-110 2-68 (313)
83 3cs3_A Sugar-binding transcrip 33.3 2.1E+02 0.0071 23.8 9.2 34 40-73 7-43 (277)
84 3brs_A Periplasmic binding pro 33.1 1.1E+02 0.0039 25.4 7.2 34 40-73 4-42 (289)
85 2fep_A Catabolite control prot 32.5 1.4E+02 0.0046 25.3 7.6 64 38-109 13-81 (289)
86 3k4h_A Putative transcriptiona 32.3 2.2E+02 0.0074 23.7 10.1 64 39-110 6-79 (292)
87 3bbl_A Regulatory protein of L 32.3 1.7E+02 0.006 24.5 8.3 63 40-110 3-74 (287)
88 3k9c_A Transcriptional regulat 31.9 2.1E+02 0.0072 24.0 8.7 71 190-263 114-193 (289)
89 2fzv_A Putative arsenical resi 31.1 1.8E+02 0.006 25.9 8.2 85 39-130 56-148 (279)
90 3evi_A Phosducin-like protein 31.0 49 0.0017 25.2 4.0 48 205-259 25-72 (118)
91 3lec_A NADB-rossmann superfami 30.9 53 0.0018 28.5 4.6 74 193-275 36-110 (230)
92 3p9n_A Possible methyltransfer 30.7 2E+02 0.0067 22.7 10.3 58 201-267 66-125 (189)
93 3cfx_A UPF0100 protein MA_0280 30.5 1.1E+02 0.0037 26.4 6.7 46 219-264 17-64 (296)
94 3dbi_A Sugar-binding transcrip 30.4 2E+02 0.007 24.8 8.6 72 190-263 169-250 (338)
95 3rot_A ABC sugar transporter, 29.8 2.5E+02 0.0085 23.6 9.1 65 40-110 2-71 (297)
96 3idf_A USP-like protein; unive 29.7 1.7E+02 0.0057 21.5 8.6 28 184-212 12-40 (138)
97 3g1w_A Sugar ABC transporter; 29.6 1.2E+02 0.0042 25.6 6.8 63 41-110 4-71 (305)
98 3jy6_A Transcriptional regulat 29.2 59 0.002 27.3 4.6 75 189-264 110-190 (276)
99 3clk_A Transcription regulator 29.0 1.7E+02 0.0058 24.5 7.6 34 40-73 7-43 (290)
100 3e3m_A Transcriptional regulat 28.8 2.4E+02 0.0083 24.5 8.9 34 40-73 69-105 (355)
101 3ot1_A 4-methyl-5(B-hydroxyeth 28.7 91 0.0031 25.9 5.6 70 34-106 3-77 (208)
102 3c9h_A ABC transporter, substr 28.6 69 0.0024 28.3 5.1 56 203-263 34-95 (355)
103 2hsg_A Glucose-resistance amyl 28.4 1.7E+02 0.0059 25.2 7.7 40 33-73 53-95 (332)
104 3cis_A Uncharacterized protein 27.7 95 0.0032 26.8 5.8 26 184-210 30-55 (309)
105 3bvr_A NOTI restriction endonu 27.6 14 0.00048 34.1 0.3 29 250-278 70-100 (383)
106 1elj_A Maltodextrin-binding pr 27.2 64 0.0022 28.7 4.7 44 219-262 20-66 (381)
107 4e4r_A Phosphate acetyltransfe 26.6 1.7E+02 0.0057 26.8 7.4 98 182-279 177-292 (331)
108 3kke_A LACI family transcripti 26.4 2.9E+02 0.01 23.3 8.9 70 32-110 7-81 (303)
109 2b3f_A Glucose-binding protein 26.3 1E+02 0.0035 27.6 5.9 45 218-262 14-66 (400)
110 3cij_A UPF0100 protein AF_0094 26.3 1E+02 0.0035 26.5 5.7 46 219-264 17-64 (295)
111 2esr_A Methyltransferase; stru 26.2 2.2E+02 0.0077 21.9 7.4 63 193-265 46-110 (177)
112 3e8s_A Putative SAM dependent 25.9 98 0.0034 24.7 5.2 53 203-266 75-127 (227)
113 3gyb_A Transcriptional regulat 25.7 2.2E+02 0.0075 23.5 7.7 35 39-73 3-40 (280)
114 3uor_A ABC transporter sugar b 25.2 1E+02 0.0034 28.4 5.7 58 202-263 29-91 (458)
115 3gnl_A Uncharacterized protein 25.0 67 0.0023 28.2 4.2 74 193-275 36-110 (244)
116 2iks_A DNA-binding transcripti 25.0 3E+02 0.01 22.9 9.1 34 40-73 19-55 (293)
117 3g85_A Transcriptional regulat 24.5 3E+02 0.01 22.8 9.3 62 40-109 10-77 (289)
118 3hem_A Cyclopropane-fatty-acyl 24.5 1.4E+02 0.0046 25.7 6.2 63 193-268 87-150 (302)
119 3s3t_A Nucleotide-binding prot 24.4 65 0.0022 24.1 3.6 26 184-210 16-41 (146)
120 3jvd_A Transcriptional regulat 24.3 2.2E+02 0.0076 24.7 7.7 34 40-73 63-99 (333)
121 3cfz_A UPF0100 protein MJ1186; 23.8 1.6E+02 0.0055 25.2 6.5 46 219-264 17-64 (292)
122 3lft_A Uncharacterized protein 23.8 2.9E+02 0.0099 23.3 8.2 36 41-78 2-44 (295)
123 2heu_A Sugar ABC transporter, 23.7 99 0.0034 27.7 5.3 44 219-262 32-79 (401)
124 3g89_A Ribosomal RNA small sub 23.7 1.8E+02 0.0063 24.7 6.8 61 193-264 95-160 (249)
125 2qh8_A Uncharacterized protein 23.6 2.4E+02 0.0083 24.0 7.7 38 40-78 7-51 (302)
126 3mt0_A Uncharacterized protein 23.6 3.3E+02 0.011 22.9 13.5 26 186-212 154-179 (290)
127 3l4e_A Uncharacterized peptida 22.7 68 0.0023 27.1 3.7 58 41-108 27-87 (206)
128 4grd_A N5-CAIR mutase, phospho 22.6 2.2E+02 0.0077 23.8 6.8 34 40-73 11-44 (173)
129 2vrn_A Protease I, DR1199; cys 21.9 95 0.0033 25.0 4.4 37 38-74 6-42 (190)
130 3bzb_A Uncharacterized protein 21.4 2.5E+02 0.0084 24.1 7.3 26 252-277 160-191 (281)
131 3hs3_A Ribose operon repressor 21.4 2E+02 0.0067 24.0 6.5 40 33-73 3-46 (277)
132 2rir_A Dipicolinate synthase, 21.3 1.1E+02 0.0039 26.7 5.1 61 40-106 6-66 (300)
133 3en0_A Cyanophycinase; serine 21.2 2.1E+02 0.0072 25.6 6.9 61 41-108 56-118 (291)
134 3k6v_A Solute-binding protein 21.2 1.3E+02 0.0043 27.7 5.5 58 203-264 43-102 (354)
135 1ixc_A CBNR, LYSR-type regulat 21.2 3.4E+02 0.012 22.2 8.0 57 202-263 90-148 (294)
136 1xmp_A PURE, phosphoribosylami 20.8 1.7E+02 0.0059 24.4 5.7 34 40-73 10-43 (170)
137 3hm2_A Precorrin-6Y C5,15-meth 20.8 1.7E+02 0.006 22.3 5.6 22 254-275 93-116 (178)
138 3m70_A Tellurite resistance pr 20.7 1E+02 0.0036 26.2 4.6 61 193-266 135-195 (286)
139 3hgm_A Universal stress protei 20.5 87 0.003 23.3 3.7 28 184-212 13-40 (147)
140 2z08_A Universal stress protei 20.5 88 0.003 23.2 3.6 25 184-209 13-37 (137)
141 3kjx_A Transcriptional regulat 20.4 2.3E+02 0.0079 24.5 6.9 34 40-73 67-103 (344)
142 2p8i_A Putative dioxygenase; Y 20.4 74 0.0025 25.0 3.2 37 234-271 61-97 (117)
143 3f3q_A Thioredoxin-1; His TAG, 20.4 1.6E+02 0.0056 20.9 5.1 49 194-244 17-65 (109)
144 3mgg_A Methyltransferase; NYSG 20.3 1.7E+02 0.0056 24.6 5.8 63 194-267 53-117 (276)
145 2pxx_A Uncharacterized protein 20.2 1.2E+02 0.004 24.1 4.6 64 194-269 58-121 (215)
146 3ors_A N5-carboxyaminoimidazol 20.2 2.4E+02 0.0081 23.4 6.4 33 41-73 3-35 (163)
147 3qd7_X Uncharacterized protein 20.1 3E+02 0.01 21.8 6.9 62 175-236 49-111 (137)
148 1u11_A PURE (N5-carboxyaminoim 20.0 1.9E+02 0.0066 24.4 5.9 33 41-73 21-53 (182)
No 1
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=2.6e-88 Score=638.45 Aligned_cols=243 Identities=37% Similarity=0.603 Sum_probs=235.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC--CCCcC
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI--GKGHR 118 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~--~~~~~ 118 (285)
.++|+||||||||||||+++++||++++++++|+++++|++++..+++.+|+|++++||++|++||||+++|. ..+++
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~ 80 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF 80 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999997 34678
Q ss_pred chhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHH
Q 023218 119 SLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAK 198 (285)
Q Consensus 119 s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~ 198 (285)
|++++|||+||||||+|||+++| ++++++++||+||||||||+|+|.+++ .+++++++++||++++|||+|+||+||+
T Consensus 81 s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~ 158 (333)
T 1x0l_A 81 GAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAE 158 (333)
T ss_dssp CHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999998999999999999999999887 6789999999999999999999999999
Q ss_pred hCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccC
Q 023218 199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG 278 (285)
Q Consensus 199 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~G 278 (285)
+|+||+||++||+|||+.|+|||+++|+|++++||||+++|++||+||||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~G 238 (333)
T 1x0l_A 159 GRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238 (333)
T ss_dssp TSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 023218 279 GLGLTPR 285 (285)
Q Consensus 279 glGl~pS 285 (285)
|+||+||
T Consensus 239 slGl~ps 245 (333)
T 1x0l_A 239 GLGLAPS 245 (333)
T ss_dssp CSTTCEE
T ss_pred Cccccee
Confidence 9999997
No 2
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=3.5e-88 Score=641.71 Aligned_cols=250 Identities=52% Similarity=0.882 Sum_probs=239.3
Q ss_pred ccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC
Q 023218 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (285)
Q Consensus 35 ~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~ 114 (285)
+++++++++|++|||||||||||+++++||++++++++|+++++|.++ +.+++.+|+|++++|+++|++||||+++|.+
T Consensus 15 ~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~ 93 (354)
T 3blx_B 15 PNPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG 93 (354)
T ss_dssp CCTTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC--
T ss_pred chhcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC
Confidence 456777899999999999999999999999999999999999999999 9999999999999999999999999999987
Q ss_pred CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHH
Q 023218 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (285)
Q Consensus 115 ~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AF 194 (285)
.+++|++++|||+||||||+|||+++||++++++++||+||||||||+|+|.+++..+++++++++||++++|||+|+||
T Consensus 94 ~~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AF 173 (354)
T 3blx_B 94 KGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAF 173 (354)
T ss_dssp --CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHH
Confidence 77889999999999999999999999999999989999999999999999999877788999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCcc--EEEeCCchhhHHhhh
Q 023218 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDL 272 (285)
Q Consensus 195 e~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD--VIVt~NlfGDILSDl 272 (285)
+||++|+||+||++||+|||+.|||||+++|+|++++||||+++|+|||+||||||++|++|| ||||+|||||||||+
T Consensus 174 e~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~ 253 (354)
T 3blx_B 174 EYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDL 253 (354)
T ss_dssp HHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHH
Confidence 999999889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhc-cCCcccCCC
Q 023218 273 CAGL-IGGLGLTPR 285 (285)
Q Consensus 273 aa~l-~GglGl~pS 285 (285)
+|++ +|||||+||
T Consensus 254 aa~l~~GslGl~pS 267 (354)
T 3blx_B 254 NSGLSAGSLGLTPS 267 (354)
T ss_dssp HHHHHTSSGGGCEE
T ss_pred HHhhccCCccccce
Confidence 9999 999999997
No 3
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.9e-87 Score=639.00 Aligned_cols=246 Identities=29% Similarity=0.482 Sum_probs=233.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccc-eecCCCCCCcChhhHHHhhhcCeEEECCccCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGT-EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~-~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~ 114 (285)
++++|+||||||||||||+++++||+++ +++++|+++++|+ ++++.+++.+|+|++++||++|++||||+++|.+
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 4589999999999999999999999986 6999999999999 8889999999999999999999999999999963
Q ss_pred --CCc--CchhHHHhhhcCcEEEeEEeccCCCCCCCC-----CCccEEEEccCCCCccccceeeEe----CCeEEEEEee
Q 023218 115 --KGH--RSLNLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKII 181 (285)
Q Consensus 115 --~~~--~s~~~~LRk~ldlyanvRP~~~~pg~~~~~-----~~vD~vIvREnteG~Y~g~~~~~~----~~~a~~~~~~ 181 (285)
+++ +|++++|||+||||||+|||+++||+++++ +++|||||||||||+|+|.+++.. +++++++++|
T Consensus 84 ~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~ 163 (364)
T 3flk_A 84 VPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIF 163 (364)
T ss_dssp BCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEEE
T ss_pred CCCCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEEE
Confidence 222 588999999999999999999999998886 679999999999999999988764 5789999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEe
Q 023218 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt 261 (285)
||+++|||+|+||+||++|++|+||+|||+|||+.|+|||+++|+|+|++||||+++|+|||+||||||++|++||||||
T Consensus 164 T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDVivt 243 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVA 243 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEEe
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhhhhhhccCCcccCCC
Q 023218 262 PNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 262 ~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|||||||||++|+++|||||+||
T Consensus 244 ~NlfGDILSD~aa~l~GslGl~pS 267 (364)
T 3flk_A 244 SNLFGDILSDLGPACAGTIGIAPS 267 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCSTTCEE
T ss_pred cccchHHHHHHHHHhcCCcccccc
Confidence 999999999999999999999998
No 4
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=4.6e-87 Score=636.04 Aligned_cols=251 Identities=37% Similarity=0.594 Sum_probs=232.2
Q ss_pred cccccCCCCceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhh-cCeEEE
Q 023218 32 ARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRR-NKVGLK 106 (285)
Q Consensus 32 ~~~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~-~daiL~ 106 (285)
||+|++. ++++|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|+|++++||+ +|++||
T Consensus 2 ~~~~~~~-~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~ 80 (366)
T 3ty4_A 2 STSMSAT-RRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALF 80 (366)
T ss_dssp --------CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEE
T ss_pred CCccCCC-CceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEE
Confidence 5667664 6799999999999999999999999996 678999999999999999999999999999999 599999
Q ss_pred CCccCCCCC--CcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeE----eCCeEEEEEe
Q 023218 107 GPMATPIGK--GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQV----VRGVVESLKI 180 (285)
Q Consensus 107 Gav~~p~~~--~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~----~~~~a~~~~~ 180 (285)
||+++|.++ +++|++++|||+||||||+|||+++||+. ..++|||||||||||+|+|.+++. .+++++++++
T Consensus 81 Gavg~P~~~~~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~ 158 (366)
T 3ty4_A 81 GAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRR 158 (366)
T ss_dssp EECCCCSSCCTTCCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEE
T ss_pred CCccCCCCCCcccccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEE
Confidence 999999875 67899999999999999999999999984 247999999999999999999876 3578999999
Q ss_pred ecHHHHHHHHHHHHHHHHhC------------CCCcEEEEEcCCccccccHHHHHHHHHH---HHhCCCccceeeeHHHH
Q 023218 181 ITRQASLRVAEYAFHYAKTH------------GRERVSAIHKANIMQKTDGLFLKCCREV---AEKYPEITYEEVVIDNC 245 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r------------~~~~Vt~v~KaNvl~~t~glf~~~~~ev---a~~ypdV~~~~~~vDa~ 245 (285)
|||+++|||+|+||+||++| +||+||+|||+|||+.|+|||+++|+|+ +++||||+++|+|||+|
T Consensus 159 ~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~ 238 (366)
T 3ty4_A 159 ISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSM 238 (366)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHH
T ss_pred ecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHH
Confidence 99999999999999999998 6899999999999999999999999999 89999999999999999
Q ss_pred HHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 246 CMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 246 ~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 239 am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pS 278 (366)
T 3ty4_A 239 VYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPS 278 (366)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCC
T ss_pred HHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcc
Confidence 9999999999999999999999999999999999999998
No 5
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=2e-87 Score=635.51 Aligned_cols=246 Identities=48% Similarity=0.805 Sum_probs=235.8
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC-
Q 023218 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG- 114 (285)
Q Consensus 36 s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~- 114 (285)
++++++++|+||||||||||||+++++||++++++++|+++++|+ .+++.+|+|++++|+++|++||||+++|..
T Consensus 12 ~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~ 87 (349)
T 3blx_A 12 KKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPADQ 87 (349)
T ss_dssp -CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHHH
T ss_pred cccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCCC
Confidence 357778999999999999999999999999999999999999997 678999999999999999999999999954
Q ss_pred CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHH
Q 023218 115 KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAF 194 (285)
Q Consensus 115 ~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AF 194 (285)
++++|++++|||+||||||+|||+++||++++++++||+||||||||+|+|.+++..+++++++++||++++|||+|+||
T Consensus 88 ~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF 167 (349)
T 3blx_A 88 TGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAF 167 (349)
T ss_dssp HTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred CCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhh
Q 023218 195 HYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLC 273 (285)
Q Consensus 195 e~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDla 273 (285)
+||++|++|+||++||+|||+.|||||+++|+|++ ++||||+++|+|||+||||||++|++||||||+|||||||||++
T Consensus 168 ~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~a 247 (349)
T 3blx_A 168 DFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIG 247 (349)
T ss_dssp HHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHH
Confidence 99999988999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhccCCcccCCC
Q 023218 274 AGLIGGLGLTPR 285 (285)
Q Consensus 274 a~l~GglGl~pS 285 (285)
|+++|||||+||
T Consensus 248 a~l~GslGl~pS 259 (349)
T 3blx_A 248 AALIGGPGLVAG 259 (349)
T ss_dssp HHHHTCGGGCEE
T ss_pred HhhcCCcccceE
Confidence 999999999997
No 6
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=9.3e-87 Score=629.05 Aligned_cols=243 Identities=30% Similarity=0.499 Sum_probs=231.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC---CcC
Q 023218 42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK---GHR 118 (285)
Q Consensus 42 ~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~---~~~ 118 (285)
++|+||||||||||||+++++||++++.+++|+++++|+++++.+++.+|+|++++||++|++||||+++|..+ .++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~ 81 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER 81 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCCccccc
Confidence 69999999999999999999999999878999999999999999999999999999999999999999999432 246
Q ss_pred chhHHHhhhcCcEEEeEEeccCCCCCCCCCC---ccEEEEccCCCCccccceeeEe----CCeEEEEEeecHHHHHHHHH
Q 023218 119 SLNLTLRKELNLYANVRPCYSLPGYKTRYDD---VNLITIRENTEGEYSGLEHQVV----RGVVESLKIITRQASLRVAE 191 (285)
Q Consensus 119 s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~---vD~vIvREnteG~Y~g~~~~~~----~~~a~~~~~~Tr~~~eRIar 191 (285)
|++++|||+||||||+|||+++||+++++++ +||+||||||||+|+|.+++.. +++++++++||++++|||+|
T Consensus 82 s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar 161 (337)
T 1w0d_A 82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA 161 (337)
T ss_dssp HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred chHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHHHHH
Confidence 8899999999999999999999999988866 9999999999999999998753 35899999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhh
Q 023218 192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (285)
Q Consensus 192 ~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSD 271 (285)
+||+||++| ||+||+|||+|||+.|||||+++|+|++++||||+++|+|||+||||||++|++||||||+|||||||||
T Consensus 162 ~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD 240 (337)
T 1w0d_A 162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD 240 (337)
T ss_dssp HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHH
Confidence 999999998 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccCCC
Q 023218 272 LCAGLIGGLGLTPR 285 (285)
Q Consensus 272 laa~l~GglGl~pS 285 (285)
++|+++|||||+||
T Consensus 241 ~aa~l~GslGl~ps 254 (337)
T 1w0d_A 241 LAAAVCGGIGLAAS 254 (337)
T ss_dssp HHHHHTTCGGGCEE
T ss_pred HHhhhcCCcccCce
Confidence 99999999999997
No 7
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=2e-86 Score=630.61 Aligned_cols=245 Identities=30% Similarity=0.480 Sum_probs=228.2
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC
Q 023218 38 DITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (285)
Q Consensus 38 ~~~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~ 113 (285)
.|.+|+|+||||||||||||+++++||+++ +++++|+++++|++++..+++++|+|++++|+++|++||||+++|.
T Consensus 3 am~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~ 82 (361)
T 3udu_A 3 AMKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPK 82 (361)
T ss_dssp --CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCcceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCC
Confidence 456799999999999999999999999987 6899999999999999999999999999999999999999999995
Q ss_pred CC----CcC--c-hhHHHhhhcCcEEEeEEeccCCCCC--CC------CCCccEEEEccCCCCccccceeeEeCCeEEEE
Q 023218 114 GK----GHR--S-LNLTLRKELNLYANVRPCYSLPGYK--TR------YDDVNLITIRENTEGEYSGLEHQVVRGVVESL 178 (285)
Q Consensus 114 ~~----~~~--s-~~~~LRk~ldlyanvRP~~~~pg~~--~~------~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~ 178 (285)
++ +.+ + ++++|||+||||||+|||+++||++ +| ++++|||||||||||+|+|.+++. +++++++
T Consensus 83 ~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~~~ 161 (361)
T 3udu_A 83 WDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAYDT 161 (361)
T ss_dssp GTTSCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEEEE
T ss_pred cCCCCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEEEE
Confidence 42 222 2 3899999999999999999999995 54 568999999999999999998765 6789999
Q ss_pred EeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccE
Q 023218 179 KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDV 258 (285)
Q Consensus 179 ~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDV 258 (285)
++|||+++|||+|+||+||++| ||+||+|||+|||+ +++||+++|+|++++||||+++|+|||+||||||++|++|||
T Consensus 162 ~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDV 239 (361)
T 3udu_A 162 EIYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDV 239 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSE
T ss_pred EeccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcE
Confidence 9999999999999999999998 78999999999996 899999999999999999999999999999999999999999
Q ss_pred EEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 259 LVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 259 IVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|||+|||||||||++|+++||+||+||
T Consensus 240 iVt~NlfGDILSD~aa~l~GslGl~pS 266 (361)
T 3udu_A 240 MLCSNLFGDILSDELAAINGSLGLLSS 266 (361)
T ss_dssp EEECHHHHHHHHHHHHHHHCCGGGCEE
T ss_pred EEecchhHHHHHHHHHHhcCchhhcce
Confidence 999999999999999999999999997
No 8
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=3.7e-86 Score=632.88 Aligned_cols=243 Identities=31% Similarity=0.525 Sum_probs=224.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~- 115 (285)
+++|+||||||||||||+++++||+++ +++++|+++++|+++++.+++.+|+|++++|+++|++||||+++|.++
T Consensus 23 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~~ 102 (390)
T 3u1h_A 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWDQ 102 (390)
T ss_dssp -CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTTS
T ss_pred cceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcCC
Confidence 489999999999999999999999998 899999999999999999999999999999999999999999999642
Q ss_pred ---C--cCchhHHHhhhcCcEEEeEEeccCCCCC--CCC-----CCccEEEEccCCCCccccceeeEe---CCeEEEEEe
Q 023218 116 ---G--HRSLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQVV---RGVVESLKI 180 (285)
Q Consensus 116 ---~--~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~~-----~~vD~vIvREnteG~Y~g~~~~~~---~~~a~~~~~ 180 (285)
+ ..+.+++|||+||||||+|||+++||++ +|. +++|||||||||||+|+|.+++.. .++++++++
T Consensus 103 ~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~~ 182 (390)
T 3u1h_A 103 NPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTLL 182 (390)
T ss_dssp SCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEEEEEE
T ss_pred CCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEEEEEE
Confidence 2 2377999999999999999999999997 665 689999999999999999988753 357999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEE
Q 023218 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIV 260 (285)
|||+++|||+|+||++|++| ||+||+|||+||| .|++||+++|+|+|++||||+++|+|||+||||||++|++|||||
T Consensus 183 ~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViV 260 (390)
T 3u1h_A 183 YTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIV 260 (390)
T ss_dssp EEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred ecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEEE
Confidence 99999999999999999998 7899999999999 699999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHhhhhhhccCCcccCCC
Q 023218 261 MPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 261 t~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+|||||||||++|+++|||||+||
T Consensus 261 t~NlfGDILSD~aA~l~GslGl~pS 285 (390)
T 3u1h_A 261 TENMFGDILSDEASMITGSLGMLPS 285 (390)
T ss_dssp ECHHHHHHHHHHHHHHHSCTTTCEE
T ss_pred ecccchHHHHHHHHHhcCchhhcce
Confidence 9999999999999999999999997
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=4.8e-86 Score=630.71 Aligned_cols=246 Identities=29% Similarity=0.481 Sum_probs=229.4
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC
Q 023218 38 DITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI 113 (285)
Q Consensus 38 ~~~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~ 113 (285)
++..|+|+||||||||||||+++++||+++ +++++|+++++|+++++.+++.+|+|++++||++|++||||+++|.
T Consensus 10 ~~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~ 89 (375)
T 3vmk_A 10 HGSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPK 89 (375)
T ss_dssp TTSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCC
Confidence 467899999999999999999999999997 6899999999999999999999999999999999999999999996
Q ss_pred CC---C----cCchhHHHhhhcCcEEEeEEeccCCCCC--CC------CCCccEEEEccCCCCccccceeeEe----CCe
Q 023218 114 GK---G----HRSLNLTLRKELNLYANVRPCYSLPGYK--TR------YDDVNLITIRENTEGEYSGLEHQVV----RGV 174 (285)
Q Consensus 114 ~~---~----~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~------~~~vD~vIvREnteG~Y~g~~~~~~----~~~ 174 (285)
+. . +++++++|||+||||||+|||+++||++ ++ ++++|||||||||||+|+|.+++.. +++
T Consensus 90 ~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~ 169 (375)
T 3vmk_A 90 WEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEE 169 (375)
T ss_dssp GTTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGCE
T ss_pred ccCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCce
Confidence 42 1 1234899999999999999999999995 54 4689999999999999999977642 468
Q ss_pred EEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCC
Q 023218 175 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPA 254 (285)
Q Consensus 175 a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~ 254 (285)
++++++|||+++|||+|+|||||++| +|+||+|||+|||+ +++||+++|+|||++||||+++|+|||+||||||++|+
T Consensus 170 a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~ 247 (375)
T 3vmk_A 170 AFDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPN 247 (375)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGG
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCcc
Confidence 99999999999999999999999998 78999999999998 66999999999999999999999999999999999999
Q ss_pred CccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 255 AFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 255 ~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+||||||+|||||||||++|+++|||||+||
T Consensus 248 ~FDViVt~NlfGDILSD~aa~l~GslGl~pS 278 (375)
T 3vmk_A 248 EFDVMLCSNLFGDIVSDEIAMLTGSMGLLAS 278 (375)
T ss_dssp GCSEEEECHHHHHHHHHHHHHHHTCGGGCEE
T ss_pred cCcEEEECchhHHHHHHHHHHhcCCccccce
Confidence 9999999999999999999999999999997
No 10
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-85 Score=640.50 Aligned_cols=246 Identities=40% Similarity=0.723 Sum_probs=240.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCC-CCcChhhHHHhhhcCeEEECCccCCCCCCcC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~-~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~ 118 (285)
++++|++|||||||||||+++++||++++++++|+++++|+++++.++ +.+|+|++++|+++|++||||+++|.+++++
T Consensus 18 g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~~~~ 97 (496)
T 2d1c_A 18 GRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEK 97 (496)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSSSSC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCccccc
Confidence 369999999999999999999999999999999999999999999999 9999999999999999999999999877788
Q ss_pred chhHHHhhhcCcEEEeEEeccCCCCCCCC--CCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHH
Q 023218 119 SLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHY 196 (285)
Q Consensus 119 s~~~~LRk~ldlyanvRP~~~~pg~~~~~--~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~ 196 (285)
|+|++|||+||||||+|||+++||+++++ +++||+||||||||+|+|.+++..+++++++++||++++|||+|+||+|
T Consensus 98 s~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe~ 177 (496)
T 2d1c_A 98 SANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFEL 177 (496)
T ss_dssp CHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 7899999999999999999988888999999999999999999999999
Q ss_pred HHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhc
Q 023218 197 AKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGL 276 (285)
Q Consensus 197 A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l 276 (285)
|++|+||+||+|||+|||+.|+|||+++|+|++++||||+++|+|||+||||||++|++||||||+|||||||||++|++
T Consensus 178 A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l 257 (496)
T 2d1c_A 178 ARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGL 257 (496)
T ss_dssp HHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTT
T ss_pred HHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCC
Q 023218 277 IGGLGLTPR 285 (285)
Q Consensus 277 ~GglGl~pS 285 (285)
+|||||+||
T Consensus 258 ~GslGlapS 266 (496)
T 2d1c_A 258 IGGLGFAPS 266 (496)
T ss_dssp TTCGGGCEE
T ss_pred cCCcccCcE
Confidence 999999997
No 11
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=7.9e-86 Score=627.54 Aligned_cols=244 Identities=32% Similarity=0.480 Sum_probs=231.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~ 115 (285)
...+|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|+|++++|+++|++||||+++|.+.
T Consensus 11 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~ 90 (366)
T 1vlc_A 11 HHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWD 90 (366)
T ss_dssp SEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGT
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccc
Confidence 4579999999999999999999999999 899999999999999999999999999999999999999999999642
Q ss_pred C----cC--ch-hHHHhhhcCcEEEeEEeccCCCCC--CCC------CCccEEEEccCCCCccccceeeEeCCeEEEEEe
Q 023218 116 G----HR--SL-NLTLRKELNLYANVRPCYSLPGYK--TRY------DDVNLITIRENTEGEYSGLEHQVVRGVVESLKI 180 (285)
Q Consensus 116 ~----~~--s~-~~~LRk~ldlyanvRP~~~~pg~~--~~~------~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~ 180 (285)
+ .+ +. +++|||+||||||+|||+++||++ ++. +++||+||||||||+|+|.+++..+++++++++
T Consensus 91 ~~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~~~ 170 (366)
T 1vlc_A 91 DLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMI 170 (366)
T ss_dssp TSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEECC
T ss_pred cCCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEEEE
Confidence 1 11 44 999999999999999999999997 565 579999999999999999998877889999999
Q ss_pred ecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEE
Q 023218 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIV 260 (285)
|||+++|||+|+||++|++| ||+||+|||+|||+ +++||+++|+|++++||||+++|++||+||||||++|++|||||
T Consensus 171 ~Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDViv 248 (366)
T 1vlc_A 171 YDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVIL 248 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred EcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEEE
Confidence 99999999999999999998 79999999999999 99999999999999999999999999999999999999999999
Q ss_pred eCCchhhHHhhhhhhccCCcccCCC
Q 023218 261 MPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 261 t~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+|||||||||++|+++|||||+||
T Consensus 249 t~NlfGDILSD~aa~l~GslGl~pS 273 (366)
T 1vlc_A 249 TTNMFGDILSDESAALPGSLGLLPS 273 (366)
T ss_dssp ECHHHHHHHHHHHTTSSSCGGGCEE
T ss_pred EcchhHHHHHHHHHHhcCccccccE
Confidence 9999999999999999999999997
No 12
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=3.3e-85 Score=622.33 Aligned_cols=243 Identities=31% Similarity=0.510 Sum_probs=228.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK 115 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~ 115 (285)
.+++|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|+|++++|+++|++||||+++|.+.
T Consensus 2 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~ 81 (359)
T 2y3z_A 2 ASMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWD 81 (359)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGT
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccc
Confidence 3589999999999999999999999998 789999999999999999999999999999999999999999999642
Q ss_pred -------CcCchhHHHhhhcCcEEEeEEeccCCCCC--CCC-----CCccEEEEccCCCCccccceeeEeCCeEEEEEee
Q 023218 116 -------GHRSLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESLKII 181 (285)
Q Consensus 116 -------~~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~~-----~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~ 181 (285)
.+++ +++|||+||||||+|||+++||+. +|. +++|||||||||||+|+|.++...+++|+++++|
T Consensus 82 ~~~~~~~~~~~-~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~~ 160 (359)
T 2y3z_A 82 GLPRKIRPETG-LLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 160 (359)
T ss_dssp TSCGGGCHHHH-HHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCCC
T ss_pred cCCcccccchh-HHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEEE
Confidence 1234 899999999999999999999983 554 5799999999999999999876666789999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEe
Q 023218 182 TRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVM 261 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt 261 (285)
|++++|||+|+||+||++| +|+||+|||+|||+ +++||+++|+|++++||||+++|+|||+||||||++|++||||||
T Consensus 161 T~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt 238 (359)
T 2y3z_A 161 SKPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVT 238 (359)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEE
Confidence 9999999999999999998 78999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhhhhhhccCCcccCCC
Q 023218 262 PNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 262 ~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|||||||||++|+++|||||+||
T Consensus 239 ~NlfGDILSD~aa~l~GslGl~pS 262 (359)
T 2y3z_A 239 GNIFGDILSDLASVLPGSLGLLPS 262 (359)
T ss_dssp CHHHHHHHHHHHHTTTSCGGGCEE
T ss_pred cCcchHHHHHHHHHhcCcccccce
Confidence 999999999999999999999997
No 13
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=4.2e-85 Score=623.08 Aligned_cols=243 Identities=30% Similarity=0.500 Sum_probs=227.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~- 115 (285)
+++|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|+|++++||++|++||||+++|.+.
T Consensus 4 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 83 (363)
T 1cnz_A 4 NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWEN 83 (363)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred ccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCcccc
Confidence 489999999999999999999999998 799999999999999999999999999999999999999999999642
Q ss_pred ------CcCchhHHHhhhcCcEEEeEEeccCCCCC--CCC------CCccEEEEccCCCCccccceeeE----eCCeEEE
Q 023218 116 ------GHRSLNLTLRKELNLYANVRPCYSLPGYK--TRY------DDVNLITIRENTEGEYSGLEHQV----VRGVVES 177 (285)
Q Consensus 116 ------~~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~~------~~vD~vIvREnteG~Y~g~~~~~----~~~~a~~ 177 (285)
++++++++|||+||||||+|||+++||+. ++. +++||+||||||||+|+|.++.. .++++++
T Consensus 84 ~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~~a~~ 163 (363)
T 1cnz_A 84 LPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFD 163 (363)
T ss_dssp SCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCEEEE
T ss_pred CCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCceEEE
Confidence 23466999999999999999999999983 554 57999999999999999986443 2368999
Q ss_pred EEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCcc
Q 023218 178 LKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD 257 (285)
Q Consensus 178 ~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fD 257 (285)
+++||++++|||+|+||+||++| +|+||+|||+|||+ +++||+++|+|++++||||+++|+|||+||||||++|++||
T Consensus 164 ~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD 241 (363)
T 1cnz_A 164 TEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFD 241 (363)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCS
T ss_pred EEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccce
Confidence 99999999999999999999998 78999999999999 89999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 258 VLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 258 VIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
||||+|||||||||++|+++|||||+||
T Consensus 242 Vivt~NlfGDIlSD~aa~l~GslGl~pS 269 (363)
T 1cnz_A 242 VLLCSNLFGDILSDECAMITGSMGMLPS 269 (363)
T ss_dssp EEEECHHHHHHHHHHHHHHHTCGGGCEE
T ss_pred EEEECCcchHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999997
No 14
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-84 Score=613.42 Aligned_cols=237 Identities=40% Similarity=0.717 Sum_probs=230.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCc
Q 023218 42 ITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGH 117 (285)
Q Consensus 42 ~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~ 117 (285)
|+|+||||||||||||+++++||+++ +++++|+++++|++++..+++.+|+|++++|+++|++||||+++|.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 79999999999999999999999999 89999999999999999999999999999999999999999999953
Q ss_pred CchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHH
Q 023218 118 RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYA 197 (285)
Q Consensus 118 ~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A 197 (285)
.++++|||+||||||+|||+++||++++++++||+||||||||+|+|.+++..+++++++++||++++|||+|+||+||
T Consensus 79 -~~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A 157 (336)
T 1wpw_A 79 -DVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA 157 (336)
T ss_dssp -HHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 2799999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhcc
Q 023218 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLI 277 (285)
Q Consensus 198 ~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~ 277 (285)
++| ||+||++||+|||+.|+|||+++|+|++++ ||+++|+|||+||||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 234 (336)
T 1wpw_A 158 LRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234 (336)
T ss_dssp HTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred HHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhc
Confidence 998 799999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCcccCCC
Q 023218 278 GGLGLTPR 285 (285)
Q Consensus 278 GglGl~pS 285 (285)
||+||+||
T Consensus 235 GslGl~pS 242 (336)
T 1wpw_A 235 GSLGIAPS 242 (336)
T ss_dssp TCGGGCEE
T ss_pred CCccccce
Confidence 99999997
No 15
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-84 Score=628.14 Aligned_cols=245 Identities=37% Similarity=0.627 Sum_probs=234.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCC
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG 116 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~ 116 (285)
.++|++|||||||||||+++++||+++ +++++|+++++|.+++..+++.+|+|++++||++|++||||+++|.+++
T Consensus 27 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~~ 106 (412)
T 2iv0_A 27 NPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG 106 (412)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSSS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCcc
Confidence 479999999999999999999999998 8999999999999999999999999999999999999999999998778
Q ss_pred cCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE--------------------eCC
Q 023218 117 HRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV--------------------VRG 173 (285)
Q Consensus 117 ~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~--------------------~~~ 173 (285)
++|+|++|||+||||||+|||+++||++++++ ++|||||||||||+|+|.+++. .++
T Consensus 107 ~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~ 186 (412)
T 2iv0_A 107 YRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIRED 186 (412)
T ss_dssp SSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCCTT
T ss_pred ccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccccccccCCCc
Confidence 89999999999999999999999999998875 5999999999999999998753 236
Q ss_pred eEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC------------------
Q 023218 174 VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE------------------ 234 (285)
Q Consensus 174 ~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd------------------ 234 (285)
+++++++||++++|||+|+||+||++|++|+||+|||+|||+.|+|+|+++|+|+|+ +|||
T Consensus 187 ~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~ 266 (412)
T 2iv0_A 187 SGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPE 266 (412)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCT
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhccccccC
Confidence 899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred --ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 --ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 --V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 267 ~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlaps 319 (412)
T 2iv0_A 267 GKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPG 319 (412)
T ss_dssp TCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEE
T ss_pred CeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccce
Confidence 999999999999999999999999999999999999999999999999997
No 16
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=8e-85 Score=631.99 Aligned_cols=246 Identities=31% Similarity=0.552 Sum_probs=228.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-------CCCeEEEEEeccceecCCCCC--CcChhhHHHhhhcCeEEECCcc
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~ie~~~~~~G~~~~~~~~~--~lp~e~~~~ik~~daiL~Gav~ 110 (285)
.+++|+||||||||||||+++++||+++ +++++|+++++|+++++.+++ .+|+|++++||++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 4589999999999999999999999985 379999999999999988888 9999999999999999999999
Q ss_pred CCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeE-----------------
Q 023218 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQV----------------- 170 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~----------------- 170 (285)
+|.+++++|++++|||+||||||+|||+++||+++++ +++|||||||||||+|+|.+++.
T Consensus 115 tP~~~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~g 194 (427)
T 3dms_A 115 TPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMG 194 (427)
T ss_dssp CCC----CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCCcccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCccccccccccccccc
Confidence 9988888999999999999999999999999999886 47999999999999999998653
Q ss_pred ------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC---------
Q 023218 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE--------- 234 (285)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd--------- 234 (285)
.+++|+++++|||+++|||+|+||+||++|+||+||+|||+|||+.|+|||+++|+|||+ +|||
T Consensus 195 ~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~~ 274 (427)
T 3dms_A 195 VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWM 274 (427)
T ss_dssp CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCE
T ss_pred ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCcccccccccc
Confidence 134688999999999999999999999999889999999999999999999999999997 6985
Q ss_pred ----------ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ----------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ----------V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 275 ~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pS 335 (427)
T 3dms_A 275 KFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPG 335 (427)
T ss_dssp EEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEE
T ss_pred ccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccce
Confidence 788999999999999999999999999999999999999999999999997
No 17
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=5.5e-85 Score=627.84 Aligned_cols=245 Identities=29% Similarity=0.493 Sum_probs=227.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~ 114 (285)
+++++|+||||||||||||+++++||+++ +++++|+++++|+++++.+++.+|+|++++|+++|++||||+++|.+
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 46799999999999999999999999997 68999999999999999999999999999999999999999999964
Q ss_pred CC---c---CchhHHHhhhcCcEEEeEEeccCCCC--CCCC-----CCccEEEEccCCCCccccceeeEe-----CCeEE
Q 023218 115 KG---H---RSLNLTLRKELNLYANVRPCYSLPGY--KTRY-----DDVNLITIRENTEGEYSGLEHQVV-----RGVVE 176 (285)
Q Consensus 115 ~~---~---~s~~~~LRk~ldlyanvRP~~~~pg~--~~~~-----~~vD~vIvREnteG~Y~g~~~~~~-----~~~a~ 176 (285)
.. . .+.+++|||+||||||+|||+++||+ +++. +++|||||||||||+|+|.+++.. +++++
T Consensus 120 ~~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~ 199 (405)
T 3r8w_A 120 DNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGF 199 (405)
T ss_dssp TTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEE
T ss_pred cCCccccCcccchHHHHHHhCCeEEEEEeeccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEE
Confidence 21 2 24589999999999999999999998 4553 589999999999999999987642 34789
Q ss_pred EEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCc
Q 023218 177 SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAF 256 (285)
Q Consensus 177 ~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~f 256 (285)
++++||++++|||+|+|||||++| +|+||+|||+|||+.+ +||+++|+|++++||||+++|+|||+||||||++|++|
T Consensus 200 ~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~F 277 (405)
T 3r8w_A 200 NTEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQF 277 (405)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhC
Confidence 999999999999999999999976 7899999999999855 99999999999999999999999999999999999999
Q ss_pred cEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 257 DVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 257 DVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|||||+|||||||||++|+++|||||+||
T Consensus 278 DViVt~NlfGDILSD~aA~l~GslGl~pS 306 (405)
T 3r8w_A 278 DTIVTNNIFGDILSDEASMITGSIGMLPS 306 (405)
T ss_dssp SEEEECHHHHHHHHHHHHHHHSCGGGCEE
T ss_pred cEEeecchhhHHHHHHHHHhcCcccccce
Confidence 99999999999999999999999999997
No 18
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=2.1e-84 Score=626.52 Aligned_cols=246 Identities=33% Similarity=0.603 Sum_probs=227.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-------CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p 112 (285)
..++|++|||||||||||+++++||+++ +++++|+++++|.+++..+++.+|+|++++||++|++||||+++|
T Consensus 23 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP 102 (409)
T 2e0c_A 23 NKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETP 102 (409)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC--
T ss_pred CCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 3579999999999999999999999997 389999999999999999999999999999999999999999999
Q ss_pred CCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE-------------------
Q 023218 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV------------------- 170 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~------------------- 170 (285)
.+++++|+|++|||+||||||+|||+++||++++++ ++|||||||||||+|+|.+++.
T Consensus 103 ~~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~~~~~~ 182 (409)
T 2e0c_A 103 IGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVE 182 (409)
T ss_dssp ------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHHHSCCC
T ss_pred CcccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccchhcccc
Confidence 877788999999999999999999999999998764 6999999999999999998743
Q ss_pred -eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC--------------
Q 023218 171 -VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE-------------- 234 (285)
Q Consensus 171 -~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd-------------- 234 (285)
.+++++++++||++++|||+|+||+||++|++|+||+|||+|||+.|+|+|+++|+|+++ +|||
T Consensus 183 ~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~ 262 (409)
T 2e0c_A 183 IEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPD 262 (409)
T ss_dssp CCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCC
T ss_pred CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 246899999999999999999999999999888999999999999999999999999998 9999
Q ss_pred ---ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ---ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ---V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 263 ~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pS 316 (409)
T 2e0c_A 263 QGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGG 316 (409)
T ss_dssp TTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEE
T ss_pred CCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCce
Confidence 999999999999999999999999999999999999999999999999997
No 19
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.2e-83 Score=623.77 Aligned_cols=246 Identities=31% Similarity=0.571 Sum_probs=234.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-------CCCeEEEEEeccceecCCCCC--CcChhhHHHhhhcCeEEECCcc
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQS--FLTWESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~ie~~~~~~G~~~~~~~~~--~lp~e~~~~ik~~daiL~Gav~ 110 (285)
..++|++|||||||||||+++++||+++ +++++|+++++|.+++..+++ .+|+|++++|+++|++||||++
T Consensus 25 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~ 104 (429)
T 2d4v_A 25 DQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLE 104 (429)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCcc
Confidence 3579999999999999999999999998 389999999999999999998 9999999999999999999999
Q ss_pred CCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE-----------------
Q 023218 111 TPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV----------------- 170 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~----------------- 170 (285)
+|.+++++|+|++|||+||||||+|||+++||++++++ ++|||||||||||+|+|.+++.
T Consensus 105 tP~~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~ 184 (429)
T 2d4v_A 105 TPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMG 184 (429)
T ss_dssp CCSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCcccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceeccccccc
Confidence 99877889999999999999999999999999998864 6999999999999999998752
Q ss_pred ------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC---------
Q 023218 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE--------- 234 (285)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd--------- 234 (285)
.+++++++++||++++|||+|+||+||++|++|+||+|||+|||+.|+|||+++|+|+|+ +|||
T Consensus 185 ~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~ 264 (429)
T 2d4v_A 185 VTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKA 264 (429)
T ss_dssp CCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHH
T ss_pred cccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccc
Confidence 236899999999999999999999999999889999999999999999999999999998 9999
Q ss_pred -----------------------ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 -----------------------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 -----------------------V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pS 338 (429)
T 2d4v_A 265 AISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPG 338 (429)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCC
T ss_pred cccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCe
Confidence 889999999999999999999999999999999999999999999999998
No 20
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=5.8e-84 Score=614.51 Aligned_cols=241 Identities=31% Similarity=0.519 Sum_probs=225.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHHHc----CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCC-
Q 023218 42 ITATLFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG- 116 (285)
Q Consensus 42 ~~IavipGDGIGpEV~~aa~~VL~a~----~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~- 116 (285)
++|+||||||||||||+++++||+++ +++++|+++++|+++++.+++.+|+|++++||++|++||||+++|.+.+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999998 7999999999999999999999999999999999999999999996421
Q ss_pred ------cCchhHHHhhhcCcEEEeEEeccCCCCC--CCC-----CCccEEEEccCCCCccccceeeE--e--CCeEEEEE
Q 023218 117 ------HRSLNLTLRKELNLYANVRPCYSLPGYK--TRY-----DDVNLITIRENTEGEYSGLEHQV--V--RGVVESLK 179 (285)
Q Consensus 117 ------~~s~~~~LRk~ldlyanvRP~~~~pg~~--~~~-----~~vD~vIvREnteG~Y~g~~~~~--~--~~~a~~~~ 179 (285)
+++ +++|||+||||||+|||+++||+. ++. +++|||||||||||+|+|.++.. . ++++++++
T Consensus 82 ~~~~~~e~~-ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (358)
T 1a05_A 82 PPAKRPEQG-LLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (358)
T ss_dssp CGGGSHHHH-HHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred Cccccchhh-HHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEEEE
Confidence 233 899999999999999999999983 554 57999999999999999986432 1 25789999
Q ss_pred eecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEE
Q 023218 180 IITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVL 259 (285)
Q Consensus 180 ~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVI 259 (285)
+||++++|||+|+||+||++| +|+||+|||+|||+ +++||+++|+|++++||||+++|+|||+||||||++|++||||
T Consensus 161 ~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDVi 238 (358)
T 1a05_A 161 VYDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998 78999999999999 8999999999999999999999999999999999999999999
Q ss_pred EeCCchhhHHhhhhhhccCCcccCCC
Q 023218 260 VMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 260 Vt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
||+|||||||||++|+++|||||+||
T Consensus 239 vt~NlfGDIlSD~aa~l~GslGl~pS 264 (358)
T 1a05_A 239 LTGNMFGDILSDEASQLTGSIGMLPS 264 (358)
T ss_dssp EECHHHHHHHHHHHHHTTSCGGGCEE
T ss_pred EecCcccHhHHHHHHhhcCCccccce
Confidence 99999999999999999999999997
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=1.8e-83 Score=621.85 Aligned_cols=246 Identities=35% Similarity=0.609 Sum_probs=234.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-------CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p 112 (285)
..++|++|||||||||||+++++||+++ +++++|+++++|.+++..+++.+|+|++++|+++|++||||+++|
T Consensus 18 ~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP 97 (423)
T 1hqs_A 18 NNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTP 97 (423)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCC
Confidence 3579999999999999999999999997 389999999999999999999999999999999999999999999
Q ss_pred CCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE-------------------
Q 023218 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV------------------- 170 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~------------------- 170 (285)
.+++++|+|++|||.||||||+|||+++||++++++ ++|||||||||||+|+|.++..
T Consensus 98 ~~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~~~~~~~~~~ 177 (423)
T 1hqs_A 98 VGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVN 177 (423)
T ss_dssp SSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHHSCCC
T ss_pred CCcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeecccccccCCccccceecccccccccc
Confidence 877889999999999999999999999999998864 6999999999999999998752
Q ss_pred ----eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC-----------
Q 023218 171 ----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE----------- 234 (285)
Q Consensus 171 ----~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd----------- 234 (285)
.+++++++++||++++|||+|+||+||++|+||+||+|||+|||+.|+|+|+++|+|+|+ +|||
T Consensus 178 ~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~ 257 (423)
T 1hqs_A 178 KIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRI 257 (423)
T ss_dssp CCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHH
T ss_pred ccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhccc
Confidence 246899999999999999999999999998889999999999999999999999999998 9999
Q ss_pred ---------------------ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ---------------------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ---------------------V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pS 329 (423)
T 1hqs_A 258 AEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPG 329 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEE
T ss_pred cccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCcc
Confidence 889999999999999999999999999999999999999999999999997
No 22
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.7e-83 Score=622.09 Aligned_cols=245 Identities=36% Similarity=0.608 Sum_probs=233.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHc-------CCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCC
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p 112 (285)
..++|++|||||||||||+++++||+++ +++++|+++++|.++++.+++.+|+|++++|+++|++||||+++|
T Consensus 34 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP 113 (435)
T 1tyo_A 34 DNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETP 113 (435)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCC
Confidence 3589999999999999999999999997 389999999999999999999999999999999999999999999
Q ss_pred CCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC---CccEEEEccCCCCccccceeeE-------------------
Q 023218 113 IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD---DVNLITIRENTEGEYSGLEHQV------------------- 170 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~---~vD~vIvREnteG~Y~g~~~~~------------------- 170 (285)
.+++++|+|++|||+||||||+|||+++ |++++++ ++|||||||||||+|+|.+++.
T Consensus 114 ~~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~ 192 (435)
T 1tyo_A 114 VGTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGIS 192 (435)
T ss_dssp TTSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCCC
T ss_pred CcccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEecCCCCeecccccccCCccccceeccchhhcccc
Confidence 8778899999999999999999999999 9988875 5999999999999999998742
Q ss_pred -eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCCC--------------
Q 023218 171 -VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYPE-------------- 234 (285)
Q Consensus 171 -~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~ypd-------------- 234 (285)
.+++++++++||++++|||+|+||+||++|+||+||+|||+|||+.|+|+|+++|+|+|+ +|||
T Consensus 193 ~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~ 272 (435)
T 1tyo_A 193 IREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGG 272 (435)
T ss_dssp CCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTT
T ss_pred CCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 246899999999999999999999999998889999999999999999999999999998 9999
Q ss_pred ------ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ------ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ------V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++||||||+|||||||||++|+++|||||+||
T Consensus 273 ~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapS 329 (435)
T 1tyo_A 273 VRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAG 329 (435)
T ss_dssp CCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEE
T ss_pred cccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCce
Confidence 999999999999999999999999999999999999999999999999997
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.6e-79 Score=594.92 Aligned_cols=247 Identities=21% Similarity=0.236 Sum_probs=225.4
Q ss_pred ccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC
Q 023218 35 FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG 114 (285)
Q Consensus 35 ~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~ 114 (285)
|++-..+++|++|||||||||||+++++||++.+++++|+++++|.++++.+++.+|+|++++||++|++||||+++|.+
T Consensus 24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 103 (427)
T 3us8_A 24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE 103 (427)
T ss_dssp -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 34433468999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---------CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC--CCccEEEEccCCCCccccceeeEe------------
Q 023218 115 ---------KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQVV------------ 171 (285)
Q Consensus 115 ---------~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~--~~vD~vIvREnteG~Y~g~~~~~~------------ 171 (285)
++++|+|++|||.||||||+||| .+++++++. .++|+|||||||||+|+|.++...
T Consensus 104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~ 182 (427)
T 3us8_A 104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE 182 (427)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred cccccccccccccCchHHHHHHhCCeEEecce-eccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence 46789999999999999999999 555555443 259999999999999999987642
Q ss_pred --------------CCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCC---
Q 023218 172 --------------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP--- 233 (285)
Q Consensus 172 --------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~yp--- 233 (285)
++++ ..++||++++|||+|+||+||++| +++||+|||+||||.|||+|+++|+|+|+ +||
T Consensus 183 ~G~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~ 260 (427)
T 3us8_A 183 DGQTIEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF 260 (427)
T ss_dssp TSCEEEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccccccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence 2345 567889999999999999999998 57899999999999999999999999998 896
Q ss_pred ---CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 234 ---EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 234 ---dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 261 ~~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pS 314 (427)
T 3us8_A 261 KAEKLWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTS 314 (427)
T ss_dssp HHTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred CCCCeEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCce
Confidence 99999999999999999999999 9999999999999999999999999997
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=1.5e-78 Score=585.42 Aligned_cols=242 Identities=20% Similarity=0.218 Sum_probs=225.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC------
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG------ 114 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~------ 114 (285)
+++|++|||||||||||++++++|++++++++|+++++|.++++.+++.+|+|++++|+++|++||||+++|.+
T Consensus 6 ~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~~ 85 (402)
T 2uxq_A 6 KTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEY 85 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred ecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred ---CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC--CCccEEEEccCCCCccccceeeE-------------------
Q 023218 115 ---KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQV------------------- 170 (285)
Q Consensus 115 ---~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~--~~vD~vIvREnteG~Y~g~~~~~------------------- 170 (285)
++++|+|++|||+||||||+|||+ +|+++++. .++||+||||||||+|+|.++..
T Consensus 86 ~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 164 (402)
T 2uxq_A 86 GLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETR 164 (402)
T ss_dssp TCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSCEEE
T ss_pred cccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCcccc
Confidence 267899999999999999999998 68887654 35999999999999999876553
Q ss_pred ------eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCC------ccc
Q 023218 171 ------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE------ITY 237 (285)
Q Consensus 171 ------~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypd------V~~ 237 (285)
..+.+....++|++++|||+|+||+||++| +++||+|||+|||+.|+|||+++|+|+| ++||| |++
T Consensus 165 ~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~ 243 (402)
T 2uxq_A 165 QTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEY 243 (402)
T ss_dssp EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCE
T ss_pred ccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEEE
Confidence 023455666899999999999999999998 6789999999999999999999999999 69999 999
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 238 EEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 238 ~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 244 ~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pS 290 (402)
T 2uxq_A 244 FYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSS 290 (402)
T ss_dssp EEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEE
T ss_pred EEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCcccccc
Confidence 9999999999999999999 9999999999999999999999999997
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=7.8e-77 Score=575.17 Aligned_cols=242 Identities=23% Similarity=0.230 Sum_probs=222.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC------
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG------ 114 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~------ 114 (285)
+++|++|||||||||||++++++|.+.+++++|+++++|+++++.+++.+|+|++++|+++|++||||+++|.+
T Consensus 8 ~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~~~ 87 (413)
T 1lwd_A 8 AKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEF 87 (413)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcccCccc
Confidence 57899999999999999999999998899999999999999999999999999999999999999999999973
Q ss_pred ---CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC--CCccEEEEccCCCCccccceeeEe------------------
Q 023218 115 ---KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQVV------------------ 171 (285)
Q Consensus 115 ---~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~--~~vD~vIvREnteG~Y~g~~~~~~------------------ 171 (285)
++++|+|++|||+||||||+|||+. ++++++. .++|++|+||||||+|+|.++...
T Consensus 88 ~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~~~~ 166 (413)
T 1lwd_A 88 KLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAK 166 (413)
T ss_dssp TCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCE
T ss_pred cccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCcccc
Confidence 2577999999999999999999974 5555433 359999999999999998654320
Q ss_pred --------CCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCC------cc
Q 023218 172 --------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE------IT 236 (285)
Q Consensus 172 --------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypd------V~ 236 (285)
.+.+..+.+||++++|||+|+||+||++| +++||+|||+|||+.|+|||+++|+||| ++||| |+
T Consensus 167 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~ 245 (413)
T 1lwd_A 167 QWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIW 245 (413)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred cccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCeEE
Confidence 23566677999999999999999999998 6789999999999999999999999999 79999 99
Q ss_pred ceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 237 YEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 237 ~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 246 ~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pS 293 (413)
T 1lwd_A 246 YEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTS 293 (413)
T ss_dssp EEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEE
T ss_pred EEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCcccccc
Confidence 99999999999999999999 9999999999999999999999999997
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-76 Score=570.12 Aligned_cols=243 Identities=19% Similarity=0.227 Sum_probs=223.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC-----
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG----- 114 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~----- 114 (285)
-+++|++|||||||||||++++++|++++++++|+++++|.++++.+++.+|+|++++||++|++||||+++|.+
T Consensus 6 ~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~ 85 (399)
T 1zor_A 6 VKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKE 85 (399)
T ss_dssp CCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred ccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcccCcc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred ----CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCC--CCccEEEEccCCCCccccceeeE------------------
Q 023218 115 ----KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQV------------------ 170 (285)
Q Consensus 115 ----~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~--~~vD~vIvREnteG~Y~g~~~~~------------------ 170 (285)
++++|+|++|||+||||||+|||+ +|+++++. ..+|++|+||||||.|+|.++..
T Consensus 86 ~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~~~ 164 (399)
T 1zor_A 86 YNLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTL 164 (399)
T ss_dssp HTCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCEEE
T ss_pred ccccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccccc
Confidence 256899999999999999999998 88887654 35999999999999999876321
Q ss_pred -----eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH----hCCC--cccee
Q 023218 171 -----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE----KYPE--ITYEE 239 (285)
Q Consensus 171 -----~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~----~ypd--V~~~~ 239 (285)
..+.+....++|++++|||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|+|+ +||+ |+++|
T Consensus 165 ~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~~~ 243 (399)
T 1zor_A 165 LVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRY 243 (399)
T ss_dssp EEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCEEE
T ss_pred eeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEEEE
Confidence 013455666899999999999999999998 56899999999999999999999999997 8995 99999
Q ss_pred eeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 240 VVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 240 ~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
+|||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 244 ~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pS 288 (399)
T 1zor_A 244 MLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTS 288 (399)
T ss_dssp EEHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEE
T ss_pred EEHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccce
Confidence 99999999999999999 9999999999999999999999999997
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=5.3e-76 Score=566.58 Aligned_cols=243 Identities=21% Similarity=0.225 Sum_probs=220.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCC-----
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG----- 114 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~----- 114 (285)
.+++|++|||||||||+|+..++++++.+++++|+++++|.++++.+++.+|+|++++||++|++||||+++|.+
T Consensus 6 ~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~ 85 (402)
T 4aoy_A 6 MKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEE 85 (402)
T ss_dssp CSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred ccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcccccc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ----CCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCC--CccEEEEccCCCCccccceeeEe-----------------
Q 023218 115 ----KGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYD--DVNLITIRENTEGEYSGLEHQVV----------------- 171 (285)
Q Consensus 115 ----~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~--~vD~vIvREnteG~Y~g~~~~~~----------------- 171 (285)
++++|+|++|||.||||||+||| .+||++++++ ++|||||||||||+|+|.|++..
T Consensus 86 ~~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~~ 164 (402)
T 4aoy_A 86 YNLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVS 164 (402)
T ss_dssp TTCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCEE
T ss_pred ccccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCccc
Confidence 46889999999999999999999 8999988765 69999999999999999988652
Q ss_pred --------CCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHH-hCC------Ccc
Q 023218 172 --------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAE-KYP------EIT 236 (285)
Q Consensus 172 --------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~yp------dV~ 236 (285)
...+....++|++++|||+|+||+||++|+ ++||++||+|||+.|||+|+++|+|+++ +|| +|+
T Consensus 165 ~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~ 243 (402)
T 4aoy_A 165 RQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQ 243 (402)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred ccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeE
Confidence 112456778899999999999999999985 7899999999999999999999999998 998 999
Q ss_pred ceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 237 YEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 237 ~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~ps 291 (402)
T 4aoy_A 244 YFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTS 291 (402)
T ss_dssp EEEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEE
T ss_pred EEEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccc
Confidence 99999999999999999999 9999999999999999999999999997
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=6.9e-74 Score=556.33 Aligned_cols=246 Identities=22% Similarity=0.264 Sum_probs=219.8
Q ss_pred CCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC-
Q 023218 37 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK- 115 (285)
Q Consensus 37 ~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~- 115 (285)
+...+++|++||||||||||++++.+.+...+++++|+++++|+++++.+++.+|+|++++|+++|++||||+++|..+
T Consensus 18 k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~ 97 (427)
T 2qfy_A 18 KIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEAR 97 (427)
T ss_dssp CEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred cccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcc
Confidence 3334689999999999999999999888777889999999999999999999999999999999999999999999632
Q ss_pred --------CcCchhHHHhhhcCcEEEeEEecc--CCCC----CCC-----------CCCccEEEEccCCCCccc------
Q 023218 116 --------GHRSLNLTLRKELNLYANVRPCYS--LPGY----KTR-----------YDDVNLITIRENTEGEYS------ 164 (285)
Q Consensus 116 --------~~~s~~~~LRk~ldlyanvRP~~~--~pg~----~~~-----------~~~vD~vIvREnteG~Y~------ 164 (285)
+++|+|++|||.||||+|+|||+. +|++ +++ ++++|++||||||||+|+
T Consensus 98 ~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~te 177 (427)
T 2qfy_A 98 VKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPT 177 (427)
T ss_dssp HHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTT
T ss_pred cchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccC
Confidence 478999999999999999999874 7655 332 257999999999999999
Q ss_pred cce---eeE----eCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCC--
Q 023218 165 GLE---HQV----VRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPE-- 234 (285)
Q Consensus 165 g~~---~~~----~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypd-- 234 (285)
|.+ +.. ..++++. .++|++++|||+|+||+||++| +++||+|||+|||+.|+|||+++|+||+ ++|||
T Consensus 178 G~~~~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~ 255 (427)
T 2qfy_A 178 TAQPQTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 (427)
T ss_dssp TSCCEEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred CccccccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcc
Confidence 522 221 1234433 5899999999999999999998 5789999999999999999999999999 79999
Q ss_pred ----ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218 235 ----ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR 285 (285)
Q Consensus 235 ----V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS 285 (285)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||
T Consensus 256 ~~~~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pS 309 (427)
T 2qfy_A 256 EQLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTS 309 (427)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEE
T ss_pred cCCeEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccce
Confidence 9999999999999999999999 9999999999999999999999999998
No 29
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=74.87 E-value=7.8 Score=33.08 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=41.2
Q ss_pred HHHHHHHHh--CCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcc-ceeeeH-------H---HHHHHHHh-CCC--
Q 023218 191 EYAFHYAKT--HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIT-YEEVVI-------D---NCCMMLVK-NPA-- 254 (285)
Q Consensus 191 r~AFe~A~~--r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~-~~~~~v-------D---a~~~~Lv~-~P~-- 254 (285)
+.|.++..+ +|.+++.++.-..-.. +.....+-+.+..+++|+++ ++..++ + .++.++++ +|.
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEG 190 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 334444444 5677888885332221 22345566777777888776 333221 1 23445554 453
Q ss_pred CccEEEeCCc
Q 023218 255 AFDVLVMPNL 264 (285)
Q Consensus 255 ~fDVIVt~Nl 264 (285)
.+|.|+|.|=
T Consensus 191 ~~~ai~~~~d 200 (291)
T 3l49_A 191 DVGAIWACWD 200 (291)
T ss_dssp SCCEEEESSH
T ss_pred CcCEEEECCC
Confidence 8999999873
No 30
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=72.54 E-value=17 Score=27.76 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCccHHH-HHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcC
Q 023218 40 TPITATLFPGDGIGPEI-AESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHR 118 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV-~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~ 118 (285)
..+||.+.=|.|++-.+ +....++++..|++++.+...++. .- +.+..+|++|.||-. +
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~--------~~-----~~~~~~Dvil~~pqv-------~ 61 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL--------AG-----EKGQNADVVLLGPQI-------A 61 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS--------TT-----HHHHHCSEEEECTTS-------G
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH--------HH-----hhccCCCEEEEccch-------h
Confidence 34689999999998875 445566777778998876665543 11 446789999998732 2
Q ss_pred chhHHHhhhcC
Q 023218 119 SLNLTLRKELN 129 (285)
Q Consensus 119 s~~~~LRk~ld 129 (285)
...-.+++.++
T Consensus 62 ~~~~~~~~~~~ 72 (106)
T 1e2b_A 62 YMLPEIQRLLP 72 (106)
T ss_dssp GGHHHHHHHSS
T ss_pred hhHHHHHHHhc
Confidence 23455666664
No 31
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=71.09 E-value=2.4 Score=39.58 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=18.8
Q ss_pred CceEEEEEcCC--CccHHHHHHHH
Q 023218 40 TPITATLFPGD--GIGPEIAESVK 61 (285)
Q Consensus 40 ~~~~IavipGD--GIGpEV~~aa~ 61 (285)
++.+|++-.|| ||||||+-.+.
T Consensus 7 ~~~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 7 RAMTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CCCCEEEECCCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCcchhHHHHHHHHH
Confidence 56899999997 99999987664
No 32
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=69.16 E-value=21 Score=32.61 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=61.1
Q ss_pred ecHHHHHHHHHHHHHHHHh-CC-CCcEEEEEcCCc-c-c-cccHHHHHHHHHHHHhCCCccce-eeeHHHHHHHHHh---
Q 023218 181 ITRQASLRVAEYAFHYAKT-HG-RERVSAIHKANI-M-Q-KTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK--- 251 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~-r~-~~~Vt~v~KaNv-l-~-~t~glf~~~~~eva~~ypdV~~~-~~~vDa~~~~Lv~--- 251 (285)
.|.+...+|++.+-++|++ -| ..||-+..=++- . + .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 178 pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (333)
T 2af4_C 178 PSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASK 257 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhc
Confidence 4788888999999999987 33 456777652211 1 1 11134556666555678998876 5778877755444
Q ss_pred ---CC--CCccEEEeCCch-hhHHhhh
Q 023218 252 ---NP--AAFDVLVMPNLY-GDIISDL 272 (285)
Q Consensus 252 ---~P--~~fDVIVt~Nlf-GDILSDl 272 (285)
+| +.+||+|++|+| |+|.-=+
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~ 284 (333)
T 2af4_C 258 APGSPVAGKANVFIFPDLNCGNIAYKI 284 (333)
T ss_dssp STTCSSTTSCCEEECSSHHHHHHHHHH
T ss_pred CCCCccCCcCCEEEECCchHHHHHHHH
Confidence 55 679999999998 5555433
No 33
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=67.47 E-value=29 Score=31.63 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=61.7
Q ss_pred ecHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCC-cc-c-cccHHHHHHHHHHHHhCCCccce-eeeHHHHHHHHHh----
Q 023218 181 ITRQASLRVAEYAFHYAKTHG-RERVSAIHKAN-IM-Q-KTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK---- 251 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~KaN-vl-~-~t~glf~~~~~eva~~ypdV~~~-~~~vDa~~~~Lv~---- 251 (285)
.|.+...+|++.+-++|++-| ..||-+..=.+ .. + .....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 179 pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 258 (329)
T 1td9_A 179 PDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKKA 258 (329)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhhC
Confidence 578889999999999998744 45677765211 11 1 11124556666666678998876 5778877755553
Q ss_pred --CC--CCccEEEeCCch-hhHHhhhh
Q 023218 252 --NP--AAFDVLVMPNLY-GDIISDLC 273 (285)
Q Consensus 252 --~P--~~fDVIVt~Nlf-GDILSDla 273 (285)
+| +++||+|++|+| |+|.-=+.
T Consensus 259 ~~s~~~G~aDvlV~pd~d~GNI~~K~l 285 (329)
T 1td9_A 259 PDSEIKGDANVFVFPSLEAGNIGYKIA 285 (329)
T ss_dssp TTSSCSSCCSEEECSSHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEECChhHHHHHHHHH
Confidence 33 579999999988 55554443
No 34
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=62.38 E-value=14 Score=31.07 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH-----H---HHHHHHHhCCC
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLVKNPA 254 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v-----D---a~~~~Lv~~P~ 254 (285)
..+.+..+++..+...++|.+++..+.-..-.. +.....+-|.+..+++|++++..... + .++.++++...
T Consensus 108 ~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (276)
T 3ksm_A 108 YAAGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETP 186 (276)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 344444444433322111667777775322111 23445566667667788776543221 1 33455555555
Q ss_pred CccEEEeCCc
Q 023218 255 AFDVLVMPNL 264 (285)
Q Consensus 255 ~fDVIVt~Nl 264 (285)
.+|.|+|.|=
T Consensus 187 ~~~ai~~~~d 196 (276)
T 3ksm_A 187 TIDGLFTPNE 196 (276)
T ss_dssp CCCEEECCSH
T ss_pred CceEEEECCc
Confidence 6888988873
No 35
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=62.29 E-value=39 Score=30.78 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=61.7
Q ss_pred ecHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCccc-ccc--HHHHHHHHHHHHhCCCcccee-eeHHHHHHHHHh----
Q 023218 181 ITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIMQ-KTD--GLFLKCCREVAEKYPEITYEE-VVIDNCCMMLVK---- 251 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~KaNvl~-~t~--glf~~~~~eva~~ypdV~~~~-~~vDa~~~~Lv~---- 251 (285)
.|.+...+|++.+-++|++-| ..||-+..=.+.-. ... ..-++.++.+.+++|++.++= +-.|++...-+.
T Consensus 183 ~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k~ 262 (337)
T 1r5j_A 183 PTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIKA 262 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhhC
Confidence 478889999999999998744 45676654322221 111 125666666667889887764 668888544332
Q ss_pred --CC--CCccEEEeCCch-hhHHhhhhh
Q 023218 252 --NP--AAFDVLVMPNLY-GDIISDLCA 274 (285)
Q Consensus 252 --~P--~~fDVIVt~Nlf-GDILSDlaa 274 (285)
+| +++||+|++|++ |+|.-=+..
T Consensus 263 ~~s~~~G~aDvlv~p~~d~GnI~~K~l~ 290 (337)
T 1r5j_A 263 PDSAVAGQANTFVFPDLQSGNIGYKIAQ 290 (337)
T ss_dssp CSCSSTTCCCEEECSSHHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEECChHHHHHHHHHHH
Confidence 22 679999999987 566544443
No 36
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=62.21 E-value=21 Score=34.89 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGD 267 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGD 267 (285)
+..+|+. | -.||-+|= + .---++++.-|++.+.+.+++...|+-...--..+++||||+|.-++=-
T Consensus 81 ~~~la~~-g-a~V~giD~------~-~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 81 SLSLASK-G-ATIVGIDF------Q-QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp HHHHHHT-T-CEEEEEES------C-HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred HHHHHhC-C-CEEEEECC------C-HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 4556654 4 57999982 2 3455667777777776666666665432211235789999999888743
No 37
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=60.05 E-value=40 Score=31.18 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=60.3
Q ss_pred ecHHHHHHHHHHHHHHHHhC-C-CCcEEEEEcCC----ccccccHHHHHHHHHHHHhCCCccce-eeeHHHHHHHHHh--
Q 023218 181 ITRQASLRVAEYAFHYAKTH-G-RERVSAIHKAN----IMQKTDGLFLKCCREVAEKYPEITYE-EVVIDNCCMMLVK-- 251 (285)
Q Consensus 181 ~Tr~~~eRIar~AFe~A~~r-~-~~~Vt~v~KaN----vl~~t~glf~~~~~eva~~ypdV~~~-~~~vDa~~~~Lv~-- 251 (285)
.|.+....|++.+-++|++- | ..||-+..=.+ -.+ ....-++.++.+.+++|++.++ .+-.|++...=+.
T Consensus 185 pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~-~~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~ 263 (355)
T 1vmi_A 185 PTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHP-CVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQ 263 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSH-HHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCc-cHHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhh
Confidence 47888889999999999874 4 46777765322 112 2223455565555678988775 4678877644444
Q ss_pred ----CC--CCccEEEeCCch-hhHHhhh
Q 023218 252 ----NP--AAFDVLVMPNLY-GDIISDL 272 (285)
Q Consensus 252 ----~P--~~fDVIVt~Nlf-GDILSDl 272 (285)
+| +.+||+|++|+| |+|.-=+
T Consensus 264 k~~~s~~~G~aDvlV~Pd~d~GNI~~K~ 291 (355)
T 1vmi_A 264 KAPASPLQGKANVMVFPSLEAGNIGYKI 291 (355)
T ss_dssp HCTTCTTTTCCSEEECSSHHHHHHHHHH
T ss_pred cCCCCccCCCCCEEEECChhHHhHHHHH
Confidence 44 579999999988 5554433
No 38
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=58.81 E-value=6.3 Score=37.04 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=33.9
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHHh--CCC-ccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHH
Q 023218 198 KTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--YPE-ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDII 269 (285)
Q Consensus 198 ~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~--ypd-V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDIL 269 (285)
.+.|.++|+.|+++++. +.++++.+. +.+ |++-+--+.. +.-|++|||||++ ++|..|
T Consensus 102 a~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~l 162 (376)
T 4hc4_A 102 AQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYGL 162 (376)
T ss_dssp HHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTTB
T ss_pred HHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-cccccc
Confidence 34577899999987633 234454443 322 5444433322 2458999999974 445444
No 39
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=56.62 E-value=65 Score=27.44 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=24.8
Q ss_pred cccccCCCCceEEEEEcCCCc---cH-HHHHHHHHHHHHcCCCeEE
Q 023218 32 ARAFSSDITPITATLFPGDGI---GP-EIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 32 ~~~~s~~~~~~~IavipGDGI---Gp-EV~~aa~~VL~a~~~~ie~ 73 (285)
+|++... +.++|+++--+-- -. ++...+.+.++..|..+.+
T Consensus 5 Ar~L~~~-~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 49 (301)
T 3miz_A 5 ARLIRSS-RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILI 49 (301)
T ss_dssp --------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhC-CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEE
Confidence 3444333 5678988854432 23 8999999999988876655
No 40
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=55.34 E-value=40 Score=29.43 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=40.9
Q ss_pred HHHHHHHHh--CCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeee-----HH---HHHHHHHhC-CCCccEE
Q 023218 191 EYAFHYAKT--HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMMLVKN-PAAFDVL 259 (285)
Q Consensus 191 r~AFe~A~~--r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~-----vD---a~~~~Lv~~-P~~fDVI 259 (285)
+.|.++..+ +|.+++.++.-..-.. +.....+-|.+..+++|++++...+ .+ .++.+++.. ...+|.|
T Consensus 123 ~~a~~~L~~~~~G~~~I~~i~g~~~~~-~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI 201 (332)
T 2rjo_A 123 EETATQLFKSMGGKGGVVALGGIFSNV-PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKGV 201 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCeeEE
Confidence 334444444 5677887775321111 2234455666666778888765432 11 234556665 5568999
Q ss_pred EeCC
Q 023218 260 VMPN 263 (285)
Q Consensus 260 Vt~N 263 (285)
+|.|
T Consensus 202 ~~~n 205 (332)
T 2rjo_A 202 WAAN 205 (332)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 41
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=54.18 E-value=7.1 Score=36.31 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=42.3
Q ss_pred eecHHHHHHHHHHHHHHHHhCC--CCcEEEEEcCCccccc--cHHH-HHH-------HHHHHHhCCCccc-eeeeHHHHH
Q 023218 180 IITRQASLRVAEYAFHYAKTHG--RERVSAIHKANIMQKT--DGLF-LKC-------CREVAEKYPEITY-EEVVIDNCC 246 (285)
Q Consensus 180 ~~Tr~~~eRIar~AFe~A~~r~--~~~Vt~v~KaNvl~~t--~glf-~~~-------~~eva~~ypdV~~-~~~~vDa~~ 246 (285)
.+|.+.+.+.++...++-++-| +.|+-+.- -| ++. .|+| +|. .++..++ ++.+ -..-.|.+-
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~G-LN--PHAGE~G~~G~EE~~iI~PAi~~~r~~--Gi~~~GP~paDT~F 255 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAG-VN--PHAGENGLFGDEETRILTPAITDARAK--GMDVYGPCPPDTVF 255 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEC-SS--GGGSSTTSCCHHHHHTHHHHHHHHHTT--TCEEEEEECHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhhc
Confidence 4789999999999888333223 34443321 12 222 2333 222 2222222 5655 456778877
Q ss_pred HHHHhCCCCccEEEe
Q 023218 247 MMLVKNPAAFDVLVM 261 (285)
Q Consensus 247 ~~Lv~~P~~fDVIVt 261 (285)
.+-.+ ++||.+|+
T Consensus 256 ~~~~~--~~~D~vla 268 (330)
T 2hi1_A 256 LQAYE--GQYDMVVA 268 (330)
T ss_dssp HHHHT--TSCSEEEE
T ss_pred ccccc--ccCCEEEE
Confidence 66544 69999987
No 42
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=53.79 E-value=73 Score=27.72 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=51.7
Q ss_pred CceEEEEEcCC----CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcC---hhhHHHhhhcCeEEECCccCC
Q 023218 40 TPITATLFPGD----GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLT---WESLESVRRNKVGLKGPMATP 112 (285)
Q Consensus 40 ~~~~IavipGD----GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp---~e~~~~ik~~daiL~Gav~~p 112 (285)
...||.+|-|- |....+.+++.+-++..+.+++ .+++........+...+ .+..+.++++|+++++. |
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve--~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~s---P 107 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVK--VFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVS---P 107 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEE--ECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEE---E
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEE--EEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEe---C
Confidence 45799999876 7778888888888887666544 45554321110111122 23567899999999875 4
Q ss_pred CCCCcCchhHHHhhhcCc
Q 023218 113 IGKGHRSLNLTLRKELNL 130 (285)
Q Consensus 113 ~~~~~~s~~~~LRk~ldl 130 (285)
... .+.-..|..-+|.
T Consensus 108 ~Yn--~sipa~LKn~iD~ 123 (247)
T 2q62_A 108 ERH--GAMTGIMKAQIDW 123 (247)
T ss_dssp CSS--SSCCHHHHHHHHT
T ss_pred CCC--CCccHHHHHHHHH
Confidence 432 1233456667774
No 43
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=53.30 E-value=70 Score=27.69 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=55.5
Q ss_pred CccEEEEccCCCCc-cccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCcccc-----------
Q 023218 149 DVNLITIRENTEGE-YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQK----------- 216 (285)
Q Consensus 149 ~vD~vIvREnteG~-Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~----------- 216 (285)
+.+++||+...... +... ..+...+. -...+++.+++|+++|+..+ .+|+++|=..-...
T Consensus 153 ~~PVlvv~~~~~~~~~~~~-----~~Ilv~~D--~s~~s~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~~~~~~~~ 224 (309)
T 3cis_A 153 HCPVVIIHDEDSVMPHPQQ-----APVLVGVD--GSSASELATAIAFDEASRRN-VDLVALHAWSDVDVSEWPGIDWPAT 224 (309)
T ss_dssp SSCEEEECTTCCCSCSSCC-----CCEEEECC--SSHHHHHHHHHHHHHHHHTT-CCEEEEEESCSSCCTTCSSCCHHHH
T ss_pred CCCEEEEcCCcccCCCCCC-----CeEEEEeC--CChHHHHHHHHHHHHHHhcC-CEEEEEEEeecccccCCCcccHHHH
Confidence 57888888765321 1111 11222221 13567899999999998864 67888874332110
Q ss_pred ---ccHHHHHHHHHHHHhCCCccceeeeH----HHHHHHHHhCCCCccEEEeCC
Q 023218 217 ---TDGLFLKCCREVAEKYPEITYEEVVI----DNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 217 ---t~glf~~~~~eva~~ypdV~~~~~~v----Da~~~~Lv~~P~~fDVIVt~N 263 (285)
......+...++.+.|+++.++.... .....+.++ +.|.||+..
T Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~adliV~G~ 275 (309)
T 3cis_A 225 QSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE---EAQLVVVGS 275 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT---TCSEEEEES
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC---CCCEEEECC
Confidence 00112222333334578887776442 233344444 788777653
No 44
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=53.04 E-value=44 Score=25.60 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCccHHHH-HHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 39 ITPITATLFPGDGIGPEIA-ESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~-~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
..+.||.++=+.|+.-.++ ....+..+.-+++++..-...+. -. +.+.++|++|+||
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~-----~~--------~~~~~~DvvLLgP 61 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-----HY--------DIMGVYDLIILAP 61 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS-----CT--------TTGGGCSEEEECG
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH-----HH--------hhccCCCEEEECh
Confidence 3568999999999887764 34445555568887765544432 11 3356799999998
No 45
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=51.93 E-value=47 Score=28.02 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHHHh--CCCCc--EEEEE-cCCccccccHHHHHHHHHHHHhCCCccceeee-----HH---HHHHH
Q 023218 182 TRQASLRVAEYAFHYAKT--HGRER--VSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEVV-----ID---NCCMM 248 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~--r~~~~--Vt~v~-KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~-----vD---a~~~~ 248 (285)
...+.+..+++..+.... +|.++ +..+. ..+.. +.....+-|.+..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 345556666665554221 14566 55554 22221 2234455666767778887654321 12 24456
Q ss_pred HHhCCCCccEEEeCC
Q 023218 249 LVKNPAAFDVLVMPN 263 (285)
Q Consensus 249 Lv~~P~~fDVIVt~N 263 (285)
+++....+|.|+|.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 666555689999987
No 46
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=51.46 E-value=32 Score=29.15 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHH--HHh-CCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH-----H---HHHHHHH
Q 023218 182 TRQASLRVAEYAFHY--AKT-HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLV 250 (285)
Q Consensus 182 Tr~~~eRIar~AFe~--A~~-r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v-----D---a~~~~Lv 250 (285)
...+.+..+++..+. -.+ +.++++..+.-..-.. +.....+-|.+..+++|++++..... + .++.+++
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~-~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 190 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVY-TTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVI 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCH-HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCc-hHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHH
Confidence 455666666666553 222 1112777775222111 33455567777777888887764321 1 3456677
Q ss_pred hCCCCccEEEeCCc
Q 023218 251 KNPAAFDVLVMPNL 264 (285)
Q Consensus 251 ~~P~~fDVIVt~Nl 264 (285)
+....+|.|+|.|=
T Consensus 191 ~~~~~~~ai~~~~d 204 (293)
T 3l6u_A 191 DSGIPFDAVYCHND 204 (293)
T ss_dssp HTTCCCSEEEESSH
T ss_pred HhCCCCCEEEECCc
Confidence 77677999999874
No 47
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.44 E-value=99 Score=25.65 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=20.1
Q ss_pred CceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++--+- --.++.....+.++..|..+.+
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 38 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLL 38 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECC
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEE
Confidence 356888884332 2346777777777777765443
No 48
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.13 E-value=45 Score=27.74 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH-----H---HHHHHHHhCCC-CccEEE
Q 023218 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI-----D---NCCMMLVKNPA-AFDVLV 260 (285)
Q Consensus 190 ar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v-----D---a~~~~Lv~~P~-~fDVIV 260 (285)
.+.|.++-.++|.+++..+.-..-.. +.....+-|.+..++++ ++...... + .++.++++... .+|.|+
T Consensus 108 ~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~ 185 (272)
T 3o74_A 108 SRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDALV 185 (272)
T ss_dssp HHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcEEE
Confidence 44455666666777777765322221 22344455555555553 43332221 1 23455555444 788888
Q ss_pred eCC
Q 023218 261 MPN 263 (285)
Q Consensus 261 t~N 263 (285)
|.|
T Consensus 186 ~~~ 188 (272)
T 3o74_A 186 TTS 188 (272)
T ss_dssp ESS
T ss_pred EeC
Confidence 877
No 49
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=48.36 E-value=21 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 023218 183 RQASLRVAEYAFHYAKTHGRERVSAIHK 210 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~~~Vt~v~K 210 (285)
...+++.+++|+++|+..+ .+|+++|=
T Consensus 35 s~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 3678999999999999864 57888764
No 50
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=48.30 E-value=70 Score=24.97 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC---CCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY---PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y---pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
..+|+ ++..+|+.+|.+- -..+.+++-++.+ +.+++.+.-+......+...++.||+|++...|.
T Consensus 60 ~~~~~-~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 60 IEAVS-RGMDKSICIEKNF-------AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHH-TTCSEEEEEESCH-------HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHH-cCCCEEEEEECCH-------HHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 33444 3456899998432 2333344433332 2243333322222223334478899999876665
No 51
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=48.11 E-value=49 Score=27.91 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=31.5
Q ss_pred cCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 36 SSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 36 s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
|.|..+.+|+||-|---=-++++++.++|+.+|+++|.
T Consensus 7 ~~~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev 44 (174)
T 3kuu_A 7 SAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHV 44 (174)
T ss_dssp CSSCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44555678999998777789999999999999998654
No 52
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=47.69 E-value=12 Score=34.77 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=47.9
Q ss_pred EeecHHHHHHHHHHHHHHHHh-CC--CCcEEEEEcCCccccc--cHH--------HHHHHHHHHHhCCCccc-eeeeHHH
Q 023218 179 KIITRQASLRVAEYAFHYAKT-HG--RERVSAIHKANIMQKT--DGL--------FLKCCREVAEKYPEITY-EEVVIDN 244 (285)
Q Consensus 179 ~~~Tr~~~eRIar~AFe~A~~-r~--~~~Vt~v~KaNvl~~t--~gl--------f~~~~~eva~~ypdV~~-~~~~vDa 244 (285)
..+|.+.+.+.++.+.+--++ -| +.|+-+.- .-+|+ .|+ -+-..++..++ ++.+ -.+-.|+
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g---LNPHAGE~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt 252 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG---LNPHAGEGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADT 252 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC---SSGGGGGGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe---cCCCCCCCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHH
Confidence 346889999999988776665 23 34666552 01111 122 23334444444 6655 4577888
Q ss_pred HHHHHHhCCCCccEEEeCCch
Q 023218 245 CCMMLVKNPAAFDVLVMPNLY 265 (285)
Q Consensus 245 ~~~~Lv~~P~~fDVIVt~Nlf 265 (285)
+-..-.+ ++||++|+.+..
T Consensus 253 ~F~~~~~--~~~D~vlaMYHD 271 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYHD 271 (334)
T ss_dssp HTSHHHH--TTCSEEEESSHH
T ss_pred hcChhhh--ccCCEEEEcccc
Confidence 7765554 789999997653
No 53
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=45.67 E-value=1.4e+02 Score=26.81 Aligned_cols=205 Identities=14% Similarity=0.202 Sum_probs=107.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceec-----------CCCCCCcChh---hHHHh--hhcC
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEID-----------PRTQSFLTWE---SLESV--RRNK 102 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~-----------~~~~~~lp~e---~~~~i--k~~d 102 (285)
..+.||++-.|+ -++|++++.++++.--. + .+.+|.+.. -.+.+ -++. ....+ .++|
T Consensus 16 ~~~kriv~~e~~--d~~vl~Aa~~a~~eg~~--~--~ILvG~~~~I~~~~~~~~eIid~~~-~~~aar~a~~mV~~G~AD 88 (291)
T 3uf6_A 16 TSSFVFAVAGAD--DEVVLETIRLALKQKLG--K--FLLFGKKEDKTLTANESVTWIQTDT-AEAAAQGAILAVKNKEAD 88 (291)
T ss_dssp CCCCEEEEETCC--SHHHHHHHHHHHHTTCC--E--EEEEESSCCHHHHTSTTEEEEECCS-HHHHHHHHHHHHHTTSCS
T ss_pred cCCCeEEEeCCC--CHHHHHHHHHHHHcCCc--e--EEEEcCHHHHhhhccCCCEEECCCC-hHHHHHHHHHHHHCCCCC
Confidence 356788888664 58999999999886211 1 233442110 00111 1111 12223 3589
Q ss_pred eEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeec
Q 023218 103 VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 182 (285)
Q Consensus 103 aiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~T 182 (285)
+++.|.++| -..||..|+--..+||.+.+ -.+-++++ ....|.+. .. +.+.+.. -|
T Consensus 89 a~vsG~~~t---------~~~lr~~l~~~~G~r~~~~v-------s~~~~~~~-p~~~~~~~-----~~-D~gvN~~-P~ 144 (291)
T 3uf6_A 89 ILVKGFIPT---------ATLMHHVLKKENGLRTDQLL-------SQIAIFDI-PTYHKPLL-----IT-DCAMNVA-PK 144 (291)
T ss_dssp EEEECSSCH---------HHHHHHHTCGGGSCCCSSCC-------EEEEEEEC-TTSSSCEE-----EE-CSSSCSS-CC
T ss_pred EEEECCCCh---------HHHHHHHhccccCCCCCcee-------eEEEEEEE-cCCCCcEE-----Ee-eceeecC-CC
Confidence 999998654 12455554322223443111 01122222 21122211 00 1111111 15
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CcEEEEE---cCCccccccHHHHHHHHHHHHhC-CCcccee-eeHHHHHHHHH-----
Q 023218 183 RQASLRVAEYAFHYAKTHGR--ERVSAIH---KANIMQKTDGLFLKCCREVAEKY-PEITYEE-VVIDNCCMMLV----- 250 (285)
Q Consensus 183 r~~~eRIar~AFe~A~~r~~--~~Vt~v~---KaNvl~~t~glf~~~~~eva~~y-pdV~~~~-~~vDa~~~~Lv----- 250 (285)
-+.--.|+..|-++|+.-|- .||-+.. |.|-. ...-++.+ ++.+++ |++.++- +..|++...=+
T Consensus 145 ~e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~---~~~~~~A~-~llk~~~~~~~vdGel~~D~Al~~~~~~~k~ 220 (291)
T 3uf6_A 145 TKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAK---MPSTLEAQ-EVVQHFGNQISVSGPLALDVAISKEAALHKG 220 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTT---SHHHHHHH-HHHHHHTTTSCEEEEECHHHHHCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcC---chHHHHHH-HHHHhhCCCCEEEecchHHHhcCHHHHHhhC
Confidence 66777888888999987553 4666653 44411 11223333 445554 9988876 56888753322
Q ss_pred -hCC--CCccEEEeCCc-hhhHHhhhhhhccC
Q 023218 251 -KNP--AAFDVLVMPNL-YGDIISDLCAGLIG 278 (285)
Q Consensus 251 -~~P--~~fDVIVt~Nl-fGDILSDlaa~l~G 278 (285)
.+| ++.||+|+||+ -|+|+--+...+.|
T Consensus 221 p~s~vaG~Anvli~P~l~agNi~yK~l~~~~~ 252 (291)
T 3uf6_A 221 ITDSSAGEADILIAPNIETGNALYKSLVYFAG 252 (291)
T ss_dssp CCCTTTTCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred CCCccCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 233 47899999998 78888877665444
No 54
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.03 E-value=90 Score=26.11 Aligned_cols=34 Identities=9% Similarity=-0.094 Sum_probs=22.6
Q ss_pred CceEEEEEcCC-----CccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGD-----GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGD-----GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
++++|+++-.+ --..++...+.+.++..|..+.+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 56 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL 56 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE
Confidence 56789988433 34567888888888877765543
No 55
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=43.98 E-value=67 Score=27.89 Aligned_cols=63 Identities=10% Similarity=0.062 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeee-H----H---HHHHHHHhCCCCccEEEeCCc
Q 023218 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVV-I----D---NCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 201 ~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~-v----D---a~~~~Lv~~P~~fDVIVt~Nl 264 (285)
|.+++..+.-..-.. +.....+-|.+..+++|++++.... - + .++.+++.....+|.|+|.|=
T Consensus 127 G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd 197 (325)
T 2x7x_A 127 GKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYAHND 197 (325)
T ss_dssp TEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEESST
T ss_pred CCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 566777665321111 2223345566666677777654321 1 1 234455554446888888774
No 56
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.71 E-value=82 Score=26.38 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=36.3
Q ss_pred CceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCccC
Q 023218 40 TPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMAT 111 (285)
Q Consensus 40 ~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~~ 111 (285)
++++|+++--+- --.++.....+.++..|..+.+.. .... ++ -..+.++.+ ++.|++++.+...
T Consensus 14 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~----~~--~~~~~~~~l~~~~vdgiIi~~~~~ 82 (298)
T 3tb6_A 14 SNKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTS--TNNN----PD--NERRGLENLLSQHIDGLIVEPTKS 82 (298)
T ss_dssp -CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEE--CTTC----HH--HHHHHHHHHHHTCCSEEEECCSST
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe--CCCC----hH--HHHHHHHHHHHCCCCEEEEecccc
Confidence 348999885443 345778888888888777665532 2111 00 011222333 5689999877643
No 57
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=43.63 E-value=53 Score=27.73 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
.+.+|+||-|.--=-++++++.++|+.+|+++|.
T Consensus 6 ~~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev 39 (174)
T 3lp6_A 6 ERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEV 39 (174)
T ss_dssp CCCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEE
Confidence 4467999988877789999999999999998654
No 58
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=42.06 E-value=15 Score=34.62 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.7
Q ss_pred ceEEEEEcCC--CccHHHHHHH
Q 023218 41 PITATLFPGD--GIGPEIAESV 60 (285)
Q Consensus 41 ~~~IavipGD--GIGpEV~~aa 60 (285)
+.+|++-.|| ||||||+-.+
T Consensus 4 ~~~iaIT~GDpaGIGpEI~~ka 25 (367)
T 3tsn_A 4 MKKLAISIGDINSIGLEILVRS 25 (367)
T ss_dssp CCEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEeCCCCccchHHHHHHh
Confidence 4589999999 8999997665
No 59
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=39.48 E-value=87 Score=22.66 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=42.7
Q ss_pred EEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcc
Q 023218 176 ESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIT 236 (285)
Q Consensus 176 ~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~ 236 (285)
.++.=.|.+++.......++-|..++.+.|.++|= + ..|.-++.+.+.-+++|.|.
T Consensus 7 lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHG----k-G~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 7 VDLRGLTVAEALLEVDQALEEARALGLSTLRLLHG----K-GTGALRQAIREALRRDKRVE 62 (83)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECC----S-TTSHHHHHHHHHHHHCTTEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC----C-CchHHHHHHHHHHhcCCcee
Confidence 34555688889999999999999888889999983 2 33667777777777777764
No 60
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=39.29 E-value=1.4e+02 Score=24.96 Aligned_cols=176 Identities=15% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCcc---HHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCccCCC
Q 023218 39 ITPITATLFPGDGIG---PEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMATPI 113 (285)
Q Consensus 39 ~~~~~IavipGDGIG---pEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~~p~ 113 (285)
+++++|+++--+--. .+++....+.++..|..+.+. ..... ++. ..+.++.+ ++.|++++.+....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~----~~~--~~~~~~~l~~~~vdgiIi~~~~~~- 76 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLA--NTAED----IVR--EREAVGQFFERRVDGLILAPSEGE- 76 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTC----HHH--HHHHHHHHHHTTCSEEEECCCSSC-
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEE--eCCCC----HHH--HHHHHHHHHHCCCCEEEEeCCCCC-
Confidence 356889998554333 467777777777777665542 22211 000 11223433 46899988765421
Q ss_pred CCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHH
Q 023218 114 GKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYA 193 (285)
Q Consensus 114 ~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~A 193 (285)
. -.+. .+. ..++.+|++-....+. +. ..+..-... ..+.|
T Consensus 77 -----~--~~~~-~~~-----------------~~~iPvV~~~~~~~~~----------~~-~~V~~D~~~----~g~~a 116 (291)
T 3egc_A 77 -----H--DYLR-TEL-----------------PKTFPIVAVNRELRIP----------GC-GAVLSENVR----GARTA 116 (291)
T ss_dssp -----C--HHHH-HSS-----------------CTTSCEEEESSCCCCT----------TC-EEEEECHHH----HHHHH
T ss_pred -----h--HHHH-Hhh-----------------ccCCCEEEEecccCCC----------CC-CEEEECcHH----HHHHH
Confidence 1 1111 110 1244555553332211 00 012222233 34445
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCC-Cccc--------eeeeHHHHHHHHHhCCCCccEEEeCCc
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP-EITY--------EEVVIDNCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-dV~~--------~~~~vDa~~~~Lv~~P~~fDVIVt~Nl 264 (285)
.++..++|.+++.++.-..-.. +.....+-|.+..+++. .+.. +..-.-.++.++++....+|.|+|.|=
T Consensus 117 ~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 195 (291)
T 3egc_A 117 VEYLIARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSH 195 (291)
T ss_dssp HHHHHHTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSH
T ss_pred HHHHHHcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCc
Confidence 5555556778888875432221 23344455555555541 1111 111122456777777778999999883
No 61
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=38.77 E-value=72 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=19.7
Q ss_pred eEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEE
Q 023218 42 ITATLFPGDG---IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 42 ~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
++|+++.-|- --.++...+.+.++..+..+.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~ 36 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 36 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEE
Confidence 5677774332 2235666677777777866654
No 62
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=38.44 E-value=1.1e+02 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCCCceEEEEEcCCCccHHH--HHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 37 SDITPITATLFPGDGIGPEI--AESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 37 ~~~~~~~IavipGDGIGpEV--~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
.....++|.++=|-|+|--. .....+.++..+++++.+...+... .. ..+++|.++.++
T Consensus 17 ~~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~----~~---------~~~~~DlIist~ 77 (113)
T 1tvm_A 17 FQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI----ET---------YMDGVHLICTTA 77 (113)
T ss_dssp CSCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTT----TT---------STTSCSEEEESS
T ss_pred hcccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHH----hh---------ccCCCCEEEECC
Confidence 33456899999999999876 4777788888888876655544321 11 134689998776
No 63
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=38.31 E-value=2e+02 Score=25.59 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEE---cCCccccccHHHHHHHHHH--HHhCCCccce-eeeHHHHHHHHHh--
Q 023218 182 TRQASLRVAEYAFHYAKTHGR--ERVSAIH---KANIMQKTDGLFLKCCREV--AEKYPEITYE-EVVIDNCCMMLVK-- 251 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~~--~~Vt~v~---KaNvl~~t~glf~~~~~ev--a~~ypdV~~~-~~~vDa~~~~Lv~-- 251 (285)
|-+.--.|+..|-++|+.-|- .||-+.. |.|- ....-++..+-+ .++.|++.++ ++-.|++.-.=++
T Consensus 126 ~~e~l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~ 202 (279)
T 1yco_A 126 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAH 202 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHh
Confidence 466677888899999988654 5677664 3331 123334433321 2234777665 4667866544333
Q ss_pred ----CC--CCccEEEeCCc-hhhHHhhhhhhc
Q 023218 252 ----NP--AAFDVLVMPNL-YGDIISDLCAGL 276 (285)
Q Consensus 252 ----~P--~~fDVIVt~Nl-fGDILSDlaa~l 276 (285)
++ +.-||+||||+ =|+|+-=+.-.+
T Consensus 203 k~~~s~~~G~adVlV~Pd~~aGNi~~K~~~~~ 234 (279)
T 1yco_A 203 KRYSGPIMGDADILVVPTIDVGNCLYKSLTLF 234 (279)
T ss_dssp TTCCSSCSSCCSEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCccCCCCCEEEECCchHHHHHHHHHHHh
Confidence 44 46799999999 477776555433
No 64
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=38.12 E-value=1.5e+02 Score=25.44 Aligned_cols=63 Identities=10% Similarity=0.197 Sum_probs=33.8
Q ss_pred CCCCcEEEEEcCCccccccHHHHHHHHHHH-HhCCCccceeee-----HH---HHHHHHHhCCCCccEEEeCC
Q 023218 200 HGRERVSAIHKANIMQKTDGLFLKCCREVA-EKYPEITYEEVV-----ID---NCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 200 r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~ypdV~~~~~~-----vD---a~~~~Lv~~P~~fDVIVt~N 263 (285)
+|++++.++.=..-.. ....|.+-+.+.. +.+|++++.... .+ ..+.+|++....+|.|+|.|
T Consensus 126 ~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 197 (316)
T 1tjy_A 126 KEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 197 (316)
T ss_dssp SSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECS
T ss_pred CCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3566777765221111 2245666666554 457887654321 12 22344444333699999988
No 65
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=37.91 E-value=17 Score=33.70 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred eecHHHHHHHHHHHHHHHHh-CC--CCcEEEEEcCCccccc--cHHH-HH-------HHHHHHHhCCCccc-eeeeHHHH
Q 023218 180 IITRQASLRVAEYAFHYAKT-HG--RERVSAIHKANIMQKT--DGLF-LK-------CCREVAEKYPEITY-EEVVIDNC 245 (285)
Q Consensus 180 ~~Tr~~~eRIar~AFe~A~~-r~--~~~Vt~v~KaNvl~~t--~glf-~~-------~~~eva~~ypdV~~-~~~~vDa~ 245 (285)
.+|.+.+.+.++...+--++ -| +.|+-+.- -| ++. .|+| +| ..++..++ ++.+ -..-.|.+
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~G-LN--PHAGE~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCG-LN--PHAGEGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEEC-SS--GGGGTTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhh
Confidence 47888888888888774444 22 34443321 12 222 2333 12 22232233 5555 45667777
Q ss_pred HHHHHhCCCCccEEEe
Q 023218 246 CMMLVKNPAAFDVLVM 261 (285)
Q Consensus 246 ~~~Lv~~P~~fDVIVt 261 (285)
-.+-.+ ++||++|+
T Consensus 249 F~~~~~--~~~D~vla 262 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA 262 (328)
T ss_dssp TSHHHH--TTCSEEEE
T ss_pred cccccc--cCCCEEEE
Confidence 655444 68999887
No 66
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=37.30 E-value=84 Score=28.11 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH---HHHHHHH---HhCCCCccEEEeCCc
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI---DNCCMML---VKNPAAFDVLVMPNL 264 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v---Da~~~~L---v~~P~~fDVIVt~Nl 264 (285)
+..|++.+-. .+..+.+++++..++||+|+++...+ |....+| +..-..+||+...+-
T Consensus 29 ~~~l~~~~~~-----~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~ 92 (414)
T 3quf_A 29 KTKISFYSYF-----KDNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTMD 92 (414)
T ss_dssp CEEEEEEESS-----CHHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECTT
T ss_pred CEEEEEEecC-----CchHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 3456665522 23578889999999999999999875 5544444 344568999988653
No 67
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=36.54 E-value=98 Score=27.57 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHH----HHHHHHHhCCCCccEEEeC
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID----NCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vD----a~~~~Lv~~P~~fDVIVt~ 262 (285)
+..||+.+-..--......|.+++.+..++||+|+++...+. .-....+..-..+||+...
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 456777763221111246888999999999999999988763 2122334444579999884
No 68
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.36 E-value=1.4e+02 Score=25.13 Aligned_cols=34 Identities=15% Similarity=-0.081 Sum_probs=21.8
Q ss_pred CceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++--+- --.++...+.+.++..|..+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 43 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVV 43 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEE
Confidence 557899985432 3356777777777777765543
No 69
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=36.32 E-value=73 Score=26.72 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 39 ITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 39 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
|.+.+|++|-|---=-++++++.++|+.+|+++|.
T Consensus 4 m~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev 38 (169)
T 3trh_A 4 MNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEA 38 (169)
T ss_dssp --CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEE
Confidence 45568999988777789999999999999998654
No 70
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=36.09 E-value=1.4e+02 Score=25.53 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=20.5
Q ss_pred eEEEEEcCCC--ccHHHHHHHHHHHHHcCCCeEE
Q 023218 42 ITATLFPGDG--IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 42 ~~IavipGDG--IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
++|+++.-+- -..++...+.+.++..|..+.+
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 35 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKF 35 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5788885321 4466777777777777766554
No 71
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=35.59 E-value=34 Score=30.84 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHH--HHHHHH---HhCCC-CccEEEeCC
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID--NCCMML---VKNPA-AFDVLVMPN 263 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vD--a~~~~L---v~~P~-~fDVIVt~N 263 (285)
.++||+-+-.+ ......|.+++.+..++||+|+++...++ ....+| +.... .+||+.+.+
T Consensus 27 ~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~ 92 (412)
T 3k01_A 27 SGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEV 92 (412)
T ss_dssp CEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEH
T ss_pred CcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecC
Confidence 45788887666 22346888999999999999999988763 333333 33555 699998754
No 72
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=35.53 E-value=1.5e+02 Score=24.80 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCcEEEEE-cCCccccccHHHHHHHHHHHHhCCCccceee-e----HH---HHHHHHHhCCCCccEEEeCC
Q 023218 202 RERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEITYEEV-V----ID---NCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 202 ~~~Vt~v~-KaNvl~~t~glf~~~~~eva~~ypdV~~~~~-~----vD---a~~~~Lv~~P~~fDVIVt~N 263 (285)
.+++..+. ..+.. +.....+-+.+..++||++++... . .+ .++.+|+..+..+|.|+|.|
T Consensus 123 ~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 191 (283)
T 2ioy_A 123 KGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVFAQN 191 (283)
T ss_dssp CEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESS
T ss_pred CceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccEEEECC
Confidence 56776664 22221 112333455666667887764322 1 12 23445555444689999988
No 73
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=35.51 E-value=1.9e+02 Score=24.09 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=39.3
Q ss_pred CCceEEEEE-cC---CCccHHHHHHHHHHHHHc-CCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 39 ITPITATLF-PG---DGIGPEIAESVKQVFRTA-EVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 39 ~~~~~Iavi-pG---DGIGpEV~~aa~~VL~a~-~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
+++++|+++ |. +..-.++...+.+.++.. +..+.+........ .+.. -.+.++.+ ++.|++++.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~---~~~~--~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPY---DYNS--FVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSS---CHHH--HHHHHHHHHTTCCSEEEECCSS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCC---CHHH--HHHHHHHHHhcCCCEEEECCCC
Confidence 466899877 33 345678888888888887 77777654432211 0000 01223433 568999887754
No 74
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.18 E-value=1.6e+02 Score=24.70 Aligned_cols=34 Identities=0% Similarity=0.001 Sum_probs=23.2
Q ss_pred CceEEEEEcC---CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPG---DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipG---DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++-- +.-..++...+.+.++..|..+.+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 43 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILL 43 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE
Confidence 5678988843 334457777777778777766654
No 75
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=35.16 E-value=41 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcCC
Q 023218 186 SLRVAEYAFHYAKTHGRERVSAIHKAN 212 (285)
Q Consensus 186 ~eRIar~AFe~A~~r~~~~Vt~v~KaN 212 (285)
+++.+++|.++|++.+ .+|+++|=..
T Consensus 16 s~~al~~a~~la~~~~-a~l~ll~v~~ 41 (143)
T 3fdx_A 16 TERIISHVESEARIDD-AEVHFLTVIP 41 (143)
T ss_dssp CTTHHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEEEec
Confidence 5678899999998764 6788887443
No 76
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.53 E-value=1.8e+02 Score=24.57 Aligned_cols=63 Identities=8% Similarity=-0.106 Sum_probs=36.7
Q ss_pred CCceEEEEEcC-------CCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCc
Q 023218 39 ITPITATLFPG-------DGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (285)
Q Consensus 39 ~~~~~IavipG-------DGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav 109 (285)
++.++|+++-- +---.+++..+.+.++..|..+.+.... . ..+ ..+.++.+ ++.|++++.+.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~-----~~~--~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE--P-----GEK--YQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC--T-----TCC--CHHHHHHHHHTCCSEEEECSC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC--C-----hhh--HHHHHHHHHcCCCCEEEEeCC
Confidence 35678888743 2234567777777777778776654321 1 111 12333444 36899998775
Q ss_pred c
Q 023218 110 A 110 (285)
Q Consensus 110 ~ 110 (285)
.
T Consensus 75 ~ 75 (294)
T 3qk7_A 75 Q 75 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.28 E-value=1.5e+02 Score=24.86 Aligned_cols=74 Identities=15% Similarity=0.023 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCC-Cccc--------eeeeHHHHHHHHHhCCCCccEE
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP-EITY--------EEVVIDNCCMMLVKNPAAFDVL 259 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-dV~~--------~~~~vDa~~~~Lv~~P~~fDVI 259 (285)
..+.|.++-.++|.+++..+.-..-.. +.....+-|.+..+++. ++.. +..-.-.++.++++....+|.|
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 192 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGI 192 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEE
Confidence 344455555666778887775332111 12233344555444431 1111 1111114566777776679999
Q ss_pred EeCC
Q 023218 260 VMPN 263 (285)
Q Consensus 260 Vt~N 263 (285)
+|.|
T Consensus 193 ~~~~ 196 (288)
T 3gv0_A 193 VSIS 196 (288)
T ss_dssp EESC
T ss_pred EEcC
Confidence 9988
No 78
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=34.18 E-value=81 Score=25.72 Aligned_cols=67 Identities=15% Similarity=0.019 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCc-ChhhHHHh---hhcCeEEEC
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFL-TWESLESV---RRNKVGLKG 107 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~l-p~e~~~~i---k~~daiL~G 107 (285)
.++|+++--||.-..=.....++|+.+++++++....-|.......+-.+ ++..++.+ ..+|+++..
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEEC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEEC
Confidence 46899998898765545556788998886555433221211112222222 33355777 788998874
No 79
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=34.10 E-value=1.1e+02 Score=25.86 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=20.8
Q ss_pred CceEEEEEcCC---CccHHHHHHHHHHHHHcCCCe
Q 023218 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPV 71 (285)
Q Consensus 40 ~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~i 71 (285)
++++|+++.-+ ....++...+.+.++..+..+
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~ 37 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNA 37 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEE
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEE
Confidence 35789998533 345677777777777776443
No 80
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=34.04 E-value=2e+02 Score=23.83 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=21.1
Q ss_pred CCceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEE
Q 023218 39 ITPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 39 ~~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+++++|+++-.+ --..++...+.+.++..|..+.+
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 42 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL 42 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 356789888533 23456777777777777766554
No 81
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=34.00 E-value=1.4e+02 Score=22.60 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHH--HHHHhCCCCccEEEeCCchh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCC--MMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~--~~Lv~~P~~fDVIVt~NlfG 266 (285)
+..+|+. +.+ |+.+|.+- -..+.+++-++... +.++...-|... ..+-..++.||+|++...|.
T Consensus 56 ~~~l~~~-~~~-v~~vD~~~-------~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 56 GLEAASE-GWE-AVLVEKDP-------EAVRLLKENVRRTG-LGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHT-TCE-EEEECCCH-------HHHHHHHHHHHHHT-CCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHC-CCe-EEEEeCCH-------HHHHHHHHHHHHcC-CceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 3444443 333 88887432 22333444333322 133333444332 23333456899999987664
No 82
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.30 E-value=2.1e+02 Score=24.18 Aligned_cols=62 Identities=8% Similarity=-0.033 Sum_probs=36.1
Q ss_pred ceEEEEEcC---CCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 41 PITATLFPG---DGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 41 ~~~IavipG---DGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
+++|+++-- +---.++...+.+.++..|..+.+... ... +.. ..+.++.+ ++.|++++.+..
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~----~~~--~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA--NGN----EET--QMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC--TTC----HHH--HHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC--CCC----HHH--HHHHHHHHHHcCCCEEEEeCCC
Confidence 467887733 445678888888888888876665322 111 000 11223333 468999887754
No 83
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=33.27 E-value=2.1e+02 Score=23.75 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=23.0
Q ss_pred CceEEEEEcC---CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPG---DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipG---DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++-- +.--.+++....+.++..+..+.+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 43 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIV 43 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEE
Confidence 5678998832 344567777777777777766544
No 84
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.12 E-value=1.1e+02 Score=25.43 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=21.7
Q ss_pred CceEEEEEcC-----CCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPG-----DGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipG-----DGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
++++|+++.- +--..++...+.+.++..|..+.+
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 42 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEF 42 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEE
Confidence 3578988843 334456777777777777765544
No 85
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=32.50 E-value=1.4e+02 Score=25.27 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=33.4
Q ss_pred CCCceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCc
Q 023218 38 DITPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (285)
Q Consensus 38 ~~~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav 109 (285)
.++.++|+++--| .--.++.....+.++..|..+.+ ...... +. -..+.++.+ ++.|++++.+.
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~----~~--~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIIL--SNSDQN----ME--KELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTC----HH--HHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCC----HH--HHHHHHHHHHhCCCCEEEEecC
Confidence 3456789888433 23356777777777777766544 222111 00 001223333 46899888664
No 86
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.33 E-value=2.2e+02 Score=23.67 Aligned_cols=64 Identities=14% Similarity=-0.029 Sum_probs=35.3
Q ss_pred CCceEEEEEcCC--------CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECC
Q 023218 39 ITPITATLFPGD--------GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGP 108 (285)
Q Consensus 39 ~~~~~IavipGD--------GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Ga 108 (285)
++.++|+++--+ .--.++...+.+.++..|..+.+. ..... .+ ...+.++.+ ++.|++++.+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~----~~--~~~~~~~~~~~~~vdgiIi~~ 77 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS--TGETE----EE--IFNGVVKMVQGRQIGGIILLY 77 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC--CCCSH----HH--HHHHHHHHHHTTCCCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE--eCCCC----HH--HHHHHHHHHHcCCCCEEEEeC
Confidence 356889998444 344577777777787777665541 11110 00 011223444 4689988866
Q ss_pred cc
Q 023218 109 MA 110 (285)
Q Consensus 109 v~ 110 (285)
..
T Consensus 78 ~~ 79 (292)
T 3k4h_A 78 SR 79 (292)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 87
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.30 E-value=1.7e+02 Score=24.47 Aligned_cols=63 Identities=5% Similarity=-0.211 Sum_probs=36.0
Q ss_pred CceEEEEEcCC-------CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 40 TPITATLFPGD-------GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGD-------GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
++++|+++--+ .--.++...+.+.++..|..+.+ ..... .+.. ..+.++.+ ++.|++++.+..
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~----~~~~--~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLP--FPFSE----DRSQ--IDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEE--CCCCS----STTC--CHHHHHHHHTTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEE--EeCCC----chHH--HHHHHHHHHcCCCCEEEEeecC
Confidence 35788888433 34567888888888888766543 21111 1111 12233444 468998887643
No 88
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=31.94 E-value=2.1e+02 Score=24.02 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcccee------eeHH---HHHHHHHhCCCCccEEE
Q 023218 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE------VVID---NCCMMLVKNPAAFDVLV 260 (285)
Q Consensus 190 ar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~------~~vD---a~~~~Lv~~P~~fDVIV 260 (285)
.+.|.++-.++|.+++-.+.-..-. +.....+-|.+..+++ ++.++. ...+ .++.++++....+|.|+
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 190 (289)
T 3k9c_A 114 ITLAVDHLTELGHRNIAHIDGADAP--GGADRRAGFLAAMDRH-GLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVV 190 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCTTST--THHHHHHHHHHHHHHT-TCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHCCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHC-CCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 3445555555677888877644322 3344455555555544 222111 1112 34567777777899999
Q ss_pred eCC
Q 023218 261 MPN 263 (285)
Q Consensus 261 t~N 263 (285)
|.|
T Consensus 191 ~~~ 193 (289)
T 3k9c_A 191 AFN 193 (289)
T ss_dssp ESS
T ss_pred ECC
Confidence 988
No 89
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.06 E-value=1.8e+02 Score=25.94 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=52.7
Q ss_pred CCceEEEEEcCC----CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCC-CCCCcCh---hhHHHhhhcCeEEECCcc
Q 023218 39 ITPITATLFPGD----GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPR-TQSFLTW---ESLESVRRNKVGLKGPMA 110 (285)
Q Consensus 39 ~~~~~IavipGD----GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~-~~~~lp~---e~~~~ik~~daiL~Gav~ 110 (285)
....||.+|-|- |....+.+++.+.++..+.+++ .+++....... ..+..++ +..+.++++|+++++.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eve--iidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aS-- 131 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETR--IFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCS-- 131 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEE--EBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEE--
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEE--EEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEc--
Confidence 346799999876 7888899999988888776554 45554321110 0012333 3567899999999875
Q ss_pred CCCCCCcCchhHHHhhhcCc
Q 023218 111 TPIGKGHRSLNLTLRKELNL 130 (285)
Q Consensus 111 ~p~~~~~~s~~~~LRk~ldl 130 (285)
|... .+.-..|..-+|.
T Consensus 132 -P~Yn--~sipg~LKn~IDr 148 (279)
T 2fzv_A 132 -PERH--GQITSVMKAQIDH 148 (279)
T ss_dssp -EEET--TEECHHHHHHHHH
T ss_pred -Cccc--cCcCHHHHHHHHH
Confidence 4321 1233456666664
No 90
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=31.01 E-value=49 Score=25.19 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=33.9
Q ss_pred EEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEE
Q 023218 205 VSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVL 259 (285)
Q Consensus 205 Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVI 259 (285)
.++||=..-.-..+.....+++++|++||++.+-..-+|.+ +.+|+|-
T Consensus 25 ~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~ 72 (118)
T 3evi_A 25 WVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDN 72 (118)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGG
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCC
Confidence 55555332222246788889999999999999988888864 4667643
No 91
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=30.87 E-value=53 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCC-CccEEEeCCchhhHHhh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPA-AFDVLVMPNLYGDIISD 271 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~-~fDVIVt~NlfGDILSD 271 (285)
+..+|+....++|+.+|- ..+.....-+.++..--+-.++...-|... .+ .|. .||+|+..||=|+++.+
T Consensus 36 ~i~la~~~~~~~V~AvDi------~~~al~~A~~N~~~~gl~~~I~~~~gD~l~--~~-~~~~~~D~IviaGmGg~lI~~ 106 (230)
T 3lec_A 36 PIFLLQMGYCDFAIAGEV------VNGPYQSALKNVSEHGLTSKIDVRLANGLS--AF-EEADNIDTITICGMGGRLIAD 106 (230)
T ss_dssp HHHHHHTTCEEEEEEEES------SHHHHHHHHHHHHHTTCTTTEEEEECSGGG--GC-CGGGCCCEEEEEEECHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCCcEEEEECchhh--cc-ccccccCEEEEeCCchHHHHH
Confidence 455666533457888872 233333333333332212124444445322 12 344 69999999999998888
Q ss_pred hhhh
Q 023218 272 LCAG 275 (285)
Q Consensus 272 laa~ 275 (285)
+...
T Consensus 107 IL~~ 110 (230)
T 3lec_A 107 ILNN 110 (230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 92
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=30.70 E-value=2e+02 Score=22.66 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCccccccHHHHHHHHHHHHhC--CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhh
Q 023218 201 GRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGD 267 (285)
Q Consensus 201 ~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y--pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGD 267 (285)
+..+|+.+|.+- -..+.+++-++.+ +.+++ ..-|.....--..++.||+|++..-|..
T Consensus 66 ~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~fD~i~~~~p~~~ 125 (189)
T 3p9n_A 66 GAASVLFVESDQ-------RSAAVIARNIEALGLSGATL--RRGAVAAVVAAGTTSPVDLVLADPPYNV 125 (189)
T ss_dssp TCSEEEEEECCH-------HHHHHHHHHHHHHTCSCEEE--EESCHHHHHHHCCSSCCSEEEECCCTTS
T ss_pred CCCeEEEEECCH-------HHHHHHHHHHHHcCCCceEE--EEccHHHHHhhccCCCccEEEECCCCCc
Confidence 445788887542 2223344333322 33443 4444332211123578999999766653
No 93
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=30.50 E-value=1.1e+02 Score=26.45 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHH--HHHHHHHhCCCCccEEEeCCc
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVID--NCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vD--a~~~~Lv~~P~~fDVIVt~Nl 264 (285)
..+.++..+..++||+|+++..+-. .+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 4677777777788999888876543 455666652346999998764
No 94
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.37 E-value=2e+02 Score=24.75 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCcccee-------eeHH---HHHHHHHhCCCCccEE
Q 023218 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEE-------VVID---NCCMMLVKNPAAFDVL 259 (285)
Q Consensus 190 ar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~-------~~vD---a~~~~Lv~~P~~fDVI 259 (285)
.+.|.++-.++|.+++-.+.-..-.. +.....+-|.+..+++ +++++. ...+ .++.+|+.....+|.|
T Consensus 169 ~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai 246 (338)
T 3dbi_A 169 SFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQH-GIALNEKLIANGKWTPASGAEGVEMLLERGAKFSAL 246 (338)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHT-TCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHC-CCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 34455555566788888875432111 2233444455544444 222111 1111 4556777777789999
Q ss_pred EeCC
Q 023218 260 VMPN 263 (285)
Q Consensus 260 Vt~N 263 (285)
+|.|
T Consensus 247 ~~~n 250 (338)
T 3dbi_A 247 VASN 250 (338)
T ss_dssp EESS
T ss_pred EECC
Confidence 9988
No 95
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=29.85 E-value=2.5e+02 Score=23.59 Aligned_cols=65 Identities=8% Similarity=-0.098 Sum_probs=35.4
Q ss_pred CceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 40 TPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 40 ~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
.+++|+++.-+- --.++...+.+.++..|..+.+.. ... +..+.. ..+.++.+ ++.|++++.+..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~--~~~~i~~l~~~~vdgiii~~~~ 71 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILA--PPG--ANDVPK--QVQFIESALATYPSGIATTIPS 71 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCCHHH--HHHHHHHHHHTCCSEEEECCCC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEEC--CCC--cCCHHH--HHHHHHHHHHcCCCEEEEeCCC
Confidence 468999995543 445677777777777776665432 110 001110 11223333 468999987764
No 96
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=29.67 E-value=1.7e+02 Score=21.51 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHH-HhCCCCcEEEEEcCC
Q 023218 184 QASLRVAEYAFHYA-KTHGRERVSAIHKAN 212 (285)
Q Consensus 184 ~~~eRIar~AFe~A-~~r~~~~Vt~v~KaN 212 (285)
+.+++.+++|.++| ++. ..+|+++|=..
T Consensus 12 ~~s~~al~~a~~la~~~~-~a~l~ll~v~~ 40 (138)
T 3idf_A 12 EACERAAQYILDMFGKDA-DCTLTLIHVKP 40 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-TEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCC-CCEEEEEEEec
Confidence 56889999999999 765 46788887444
No 97
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.57 E-value=1.2e+02 Score=25.58 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=33.7
Q ss_pred ceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCcc
Q 023218 41 PITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPMA 110 (285)
Q Consensus 41 ~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav~ 110 (285)
+++|+++.-+. --.++.....+.++..|..+.+.. ..... +.. ..+.++.+ ++.|++++.+..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~----~~~--~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG-AAQYD----IQE--QITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE-CSSSC----HHH--HHHHHHHHHHHCCSEEEECCSS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC-CCcCC----HHH--HHHHHHHHHHhCCCEEEEcCCC
Confidence 46788886543 344677777777777777665421 11110 000 11222332 468999987754
No 98
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.24 E-value=59 Score=27.32 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCc-cccccHHHHHHHHHHHHhCCCccceee--eHH---HHHHHHHhCCCCccEEEeC
Q 023218 189 VAEYAFHYAKTHGRERVSAIHKANI-MQKTDGLFLKCCREVAEKYPEITYEEV--VID---NCCMMLVKNPAAFDVLVMP 262 (285)
Q Consensus 189 Iar~AFe~A~~r~~~~Vt~v~KaNv-l~~t~glf~~~~~eva~~ypdV~~~~~--~vD---a~~~~Lv~~P~~fDVIVt~ 262 (285)
..+.|.++-.++|.+++.++.-..- .. +.....+-|.+..+++|.+.+... .-+ ..+.++++....+|.|+|.
T Consensus 110 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (276)
T 3jy6_A 110 AAKAATTAFRQQGYQHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFAL 188 (276)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEEe
Confidence 3445556666667788777754332 21 223445556665566654322211 111 2233445666789999998
Q ss_pred Cc
Q 023218 263 NL 264 (285)
Q Consensus 263 Nl 264 (285)
|=
T Consensus 189 ~d 190 (276)
T 3jy6_A 189 KE 190 (276)
T ss_dssp SH
T ss_pred Cc
Confidence 74
No 99
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.04 E-value=1.7e+02 Score=24.55 Aligned_cols=34 Identities=3% Similarity=0.034 Sum_probs=22.3
Q ss_pred CceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++-.| ..-.++.....+.++..+..+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 43 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLII 43 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 55789998533 34467777777777777765544
No 100
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.79 E-value=2.4e+02 Score=24.54 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCc---cHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDGI---GPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDGI---GpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++--+-- -.+++....+.++..|..+.+
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 105 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLL 105 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE
Confidence 4578998854432 246777777777777776654
No 101
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=28.69 E-value=91 Score=25.85 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=38.1
Q ss_pred cccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccc--eecCCCCCCc-ChhhHHHh--hhcCeEEE
Q 023218 34 AFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGT--EIDPRTQSFL-TWESLESV--RRNKVGLK 106 (285)
Q Consensus 34 ~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~--~~~~~~~~~l-p~e~~~~i--k~~daiL~ 106 (285)
+|...|. ++|+++--||.-..=.-....+|..+++++++.. ..+ ......+-.+ ++.+++.+ ..+|++++
T Consensus 3 ~~~~~m~-~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs--~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~liv 77 (208)
T 3ot1_A 3 AMEQGMS-KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAA--VGDKLQVQGSRGVWLTAEQTLEACSAEAFDALAL 77 (208)
T ss_dssp ------C-CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEE--SSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEE
T ss_pred ccccccC-CeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEE--cCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEE
Confidence 4444433 6899998898766555567788998876555433 322 1112223222 22234555 57899887
No 102
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=28.56 E-value=69 Score=28.25 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=37.6
Q ss_pred CcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHH--HHHHHHHhC----CCCccEEEeCC
Q 023218 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID--NCCMMLVKN----PAAFDVLVMPN 263 (285)
Q Consensus 203 ~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vD--a~~~~Lv~~----P~~fDVIVt~N 263 (285)
..|++.+=. ....+.+++++..++||+|+++....+ ....+|... -..+||+...+
T Consensus 34 ~~L~v~~~~-----~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 34 QTLVVYSSL-----DEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp CEEEEEECS-----CHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred CEEEEEeCC-----CHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 567776522 224678888888889999999887764 344555432 23689988776
No 103
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.43 E-value=1.7e+02 Score=25.15 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=26.0
Q ss_pred ccccCCCCceEEEEEc---CCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 33 RAFSSDITPITATLFP---GDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 33 ~~~s~~~~~~~Iavip---GDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
|++.. ++.++|+++- .+.-..++.....+.++..|..+.+
T Consensus 53 r~l~~-~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 95 (332)
T 2hsg_A 53 RGLAS-KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIIL 95 (332)
T ss_dssp HHHTT-C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHh-CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEE
Confidence 44433 3567899884 3445567888888888887776654
No 104
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=27.68 E-value=95 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIHK 210 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~K 210 (285)
..+++.+++|.++|++.+ .+|+++|=
T Consensus 30 ~~s~~al~~A~~lA~~~~-a~l~ll~v 55 (309)
T 3cis_A 30 PAAQVAVRWAARDAELRK-IPLTLVHA 55 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEEE
Confidence 467899999999999864 57888873
No 105
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=27.63 E-value=14 Score=34.13 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.2
Q ss_pred HhCCCCccEEEeCCch--hhHHhhhhhhccC
Q 023218 250 VKNPAAFDVLVMPNLY--GDIISDLCAGLIG 278 (285)
Q Consensus 250 v~~P~~fDVIVt~Nlf--GDILSDlaa~l~G 278 (285)
+.+++.||||+|||-+ +.|++|++.-+.|
T Consensus 70 ~~d~ePydvIiCPiRL~dy~il~~~s~~~Fg 100 (383)
T 3bvr_A 70 AVDNERYDWLVCPNRALDPLFMSAASRKLFG 100 (383)
T ss_dssp EETTEEEEEECCGGGGCCHHHHHHHHHHHHT
T ss_pred cCCCCCceEEEcccccccHHHHHHHHHHhcC
Confidence 3567889999999976 4578888766655
No 106
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=27.17 E-value=64 Score=28.68 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHHHHHHHHHh---CCCCccEEEeC
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVIDNCCMMLVK---NPAAFDVLVMP 262 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~---~P~~fDVIVt~ 262 (285)
..|.+++.+..++||+|+++...++..-.+|.. .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 467788888888899999998877655445543 33468987654
No 107
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=26.56 E-value=1.7e+02 Score=26.76 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCcc-ccc--cHHHHHHHHHHHHhCC----Ccccee-eeHHHHHHH----
Q 023218 182 TRQASLRVAEYAFHYAKTHG-RERVSAIHKANIM-QKT--DGLFLKCCREVAEKYP----EITYEE-VVIDNCCMM---- 248 (285)
Q Consensus 182 Tr~~~eRIar~AFe~A~~r~-~~~Vt~v~KaNvl-~~t--~glf~~~~~eva~~yp----dV~~~~-~~vDa~~~~---- 248 (285)
|-+....|+..|-++|+.-| ..||-+..=+|-- ... ...-++.++-+.+.+| ++.++- +-.|++.-.
T Consensus 177 ~~e~l~~ia~~a~~~a~~~Gi~PkVAlLs~s~~Gs~~~~~~~~~~~A~~llk~~~~~~~~~~~vdGpl~~D~A~~~~~~~ 256 (331)
T 4e4r_A 177 DSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAE 256 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECSSSTTSSCSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeCCCCCCCCCCCcHHHHHHHHHHHhhCcCCCCCeEEEccCcHHHHcCHHHHH
Confidence 56777888889999998765 3567666433211 111 1234444444444566 777764 678877532
Q ss_pred --HHhCC--CCccEEEeCCc-hhhHHhhhhhhccCC
Q 023218 249 --LVKNP--AAFDVLVMPNL-YGDIISDLCAGLIGG 279 (285)
Q Consensus 249 --Lv~~P--~~fDVIVt~Nl-fGDILSDlaa~l~Gg 279 (285)
...+| +++||+|+||+ =|+|+--+..-+.|+
T Consensus 257 ~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~a 292 (331)
T 4e4r_A 257 KKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGY 292 (331)
T ss_dssp HHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred hhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcCC
Confidence 23333 57999999999 588888777665554
No 108
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=26.36 E-value=2.9e+02 Score=23.26 Aligned_cols=70 Identities=17% Similarity=-0.015 Sum_probs=35.8
Q ss_pred cccccCCCCceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEE
Q 023218 32 ARAFSSDITPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLK 106 (285)
Q Consensus 32 ~~~~s~~~~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~ 106 (285)
+|++... +..+|+++--|- --.++.....+.++..|..+.+... .. +..-..+.++.+ ++.|++++
T Consensus 7 Ar~L~~~-~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~------~~~~~~~~~~~l~~~~vdgiI~ 77 (303)
T 3kke_A 7 ARALRHS-RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI--DA------PPRGTQQLSRLVSEGRVDGVLL 77 (303)
T ss_dssp -----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC--CS------TTHHHHHHHHHHHSCSSSEEEE
T ss_pred HHHHhhC-CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC--CC------ChHHHHHHHHHHHhCCCcEEEE
Confidence 3444333 557898884443 4467888888888888877765322 11 100112233444 46899988
Q ss_pred CCcc
Q 023218 107 GPMA 110 (285)
Q Consensus 107 Gav~ 110 (285)
.+..
T Consensus 78 ~~~~ 81 (303)
T 3kke_A 78 QRRE 81 (303)
T ss_dssp CCCT
T ss_pred ecCC
Confidence 7654
No 109
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=26.33 E-value=1e+02 Score=27.57 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhCCCccceeeeH-----HHHHHHHH---hCCCCccEEEeC
Q 023218 218 DGLFLKCCREVAEKYPEITYEEVVI-----DNCCMMLV---KNPAAFDVLVMP 262 (285)
Q Consensus 218 ~glf~~~~~eva~~ypdV~~~~~~v-----Da~~~~Lv---~~P~~fDVIVt~ 262 (285)
...|++++.+..++||+|+++...+ |....+|. ..-..+||+...
T Consensus 14 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 14 GPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 3678888998889999999998776 44444443 244568998876
No 110
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=26.30 E-value=1e+02 Score=26.50 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCccceeeeH--HHHHHHHHhCCCCccEEEeCCc
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVI--DNCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~v--Da~~~~Lv~~P~~fDVIVt~Nl 264 (285)
..+.++..+..++||+|+++..+- ..+..++...-..+||++..+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADY 64 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcCh
Confidence 467777777778899988876653 3455666552345999988764
No 111
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=26.16 E-value=2.2e+02 Score=21.85 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCc--cceeeeHHHHHHHHHhCCCCccEEEeCCch
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI--TYEEVVIDNCCMMLVKNPAAFDVLVMPNLY 265 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV--~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nlf 265 (285)
+..+|+. +..+|+.+|.+ .-..+.+++-++.+ ++ .++...-|... .+-..+..||+|++...|
T Consensus 46 ~~~l~~~-~~~~v~~vD~~-------~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 46 AIEAVSR-GMSAAVLVEKN-------RKAQAIIQDNIIMT-KAENRFTLLKMEAER-AIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp HHHHHHT-TCCEEEEECCC-------HHHHHHHHHHHHTT-TCGGGEEEECSCHHH-HHHHBCSCEEEEEECCSS
T ss_pred HHHHHHc-CCCEEEEEECC-------HHHHHHHHHHHHHc-CCCCceEEEECcHHH-hHHhhcCCCCEEEECCCC
Confidence 3445554 45689998833 23334455544443 22 13333444332 233345679999987555
No 112
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=25.88 E-value=98 Score=24.73 Aligned_cols=53 Identities=6% Similarity=-0.100 Sum_probs=27.4
Q ss_pred CcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 203 ~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
.+|+.+|-+- - +-+.+++.+.+.+...-+.............||+|++.+.+-
T Consensus 75 ~~v~~vD~s~-------~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 75 IEAVGVDGDR-------T----LVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CEEEEEESCH-------H----HHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CEEEEEcCCH-------H----HHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 4788887542 1 222333335555554444433211223334599999987654
No 113
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.68 E-value=2.2e+02 Score=23.53 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEE
Q 023218 39 ITPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 39 ~~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+++++|+++-.+ .--.++.....+.++..|..+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 40 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSV 40 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEE
Confidence 356789888433 34567778777777777766654
No 114
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=25.19 E-value=1e+02 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHH--HHHHHH---HhCCCCccEEEeCC
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVID--NCCMML---VKNPAAFDVLVMPN 263 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vD--a~~~~L---v~~P~~fDVIVt~N 263 (285)
...||+-+-.+ ....+.+++.+..++||+|+++...++ ....+| +..-..+||+...+
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGN 91 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEET
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECc
Confidence 45677765322 235788888888899999999988763 333332 23445799998765
No 115
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=25.04 E-value=67 Score=28.17 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCC-CccEEEeCCchhhHHhh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPA-AFDVLVMPNLYGDIISD 271 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~-~fDVIVt~NlfGDILSD 271 (285)
+..+|+.....+|+.+|- ..+.....-+.++..--+-.++...-|... .+ .|. .||+|+..||=|+++.+
T Consensus 36 ~i~la~~~~~~~V~avDi------~~~al~~A~~N~~~~gl~~~I~v~~gD~l~--~~-~~~~~~D~IviagmGg~lI~~ 106 (244)
T 3gnl_A 36 PCFAVKNQTASFAIAGEV------VDGPFQSAQKQVRSSGLTEQIDVRKGNGLA--VI-EKKDAIDTIVIAGMGGTLIRT 106 (244)
T ss_dssp HHHHHHTTSEEEEEEEES------SHHHHHHHHHHHHHTTCTTTEEEEECSGGG--GC-CGGGCCCEEEEEEECHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCceEEEEecchhh--cc-CccccccEEEEeCCchHHHHH
Confidence 455565532357888872 223333333333332111123444444221 12 344 59999999999988877
Q ss_pred hhhh
Q 023218 272 LCAG 275 (285)
Q Consensus 272 laa~ 275 (285)
+...
T Consensus 107 IL~~ 110 (244)
T 3gnl_A 107 ILEE 110 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 116
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=24.99 E-value=3e+02 Score=22.93 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=22.0
Q ss_pred CceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++--+ .--.++...+.+.++..|..+.+
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 55 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLI 55 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 56789988433 23356777777777777765543
No 117
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=24.48 E-value=3e+02 Score=22.76 Aligned_cols=62 Identities=8% Similarity=0.008 Sum_probs=36.0
Q ss_pred CceEEEEE-cCC---CccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHh--hhcCeEEECCc
Q 023218 40 TPITATLF-PGD---GIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESV--RRNKVGLKGPM 109 (285)
Q Consensus 40 ~~~~Iavi-pGD---GIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~i--k~~daiL~Gav 109 (285)
++++|+++ |.+ .--.++.....+.++..|..+.+.......+. .. +.++.+ ++.|++++.+.
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~-----~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDC---LH-----LEKGISKENSFDAAIIANI 77 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTC---GG-----GCGGGSTTTCCSEEEESSC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchh---HH-----HHHHHHhccCCCEEEEecC
Confidence 56889988 533 23457788888888888888776443322110 01 111322 46899988764
No 118
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=24.47 E-value=1.4e+02 Score=25.73 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCC-CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhH
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYP-EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDI 268 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDI 268 (285)
+..+|++.+ .+|+.+|-+ .-..+.+++-.++.+ .-.++...-|.. .+ ++.||+|++.+++..+
T Consensus 87 ~~~la~~~~-~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~---~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 87 MRHAVAEYD-VNVIGLTLS-------ENQYAHDKAMFDEVDSPRRKEVRIQGWE--EF---DEPVDRIVSLGAFEHF 150 (302)
T ss_dssp HHHHHHHHC-CEEEEEECC-------HHHHHHHHHHHHHSCCSSCEEEEECCGG--GC---CCCCSEEEEESCGGGT
T ss_pred HHHHHHhCC-CEEEEEECC-------HHHHHHHHHHHHhcCCCCceEEEECCHH--Hc---CCCccEEEEcchHHhc
Confidence 444555544 679988743 233344555444432 101333333432 22 7899999999887544
No 119
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=24.40 E-value=65 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEc
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIHK 210 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~K 210 (285)
+.+++.+++|.++|++.+ .+|+++|=
T Consensus 16 ~~s~~al~~A~~la~~~~-a~l~ll~v 41 (146)
T 3s3t_A 16 DAAQAAFTEAVNIAQRHQ-ANLTALYV 41 (146)
T ss_dssp HHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 568899999999998864 67777764
No 120
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.26 E-value=2.2e+02 Score=24.66 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=22.5
Q ss_pred CceEEEEEcCCC---ccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDG---IGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++--|- --.++.....+.++..|..+.+
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 99 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLV 99 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEE
Confidence 457899885553 2346777777777777766655
No 121
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=23.83 E-value=1.6e+02 Score=25.23 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHH--HHHHHHHhCCCCccEEEeCCc
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVID--NCCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vD--a~~~~Lv~~P~~fDVIVt~Nl 264 (285)
..+.++..+..++||+|+++..+-. .+..++...-..+||+++.+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECCh
Confidence 4567777777778899888765533 455666552346999988764
No 122
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.78 E-value=2.9e+02 Score=23.29 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCcc----HHHHHHHHHHHHHcCC---CeEEEEEec
Q 023218 41 PITATLFPGDGIG----PEIAESVKQVFRTAEV---PVEWEEHYV 78 (285)
Q Consensus 41 ~~~IavipGDGIG----pEV~~aa~~VL~a~~~---~ie~~~~~~ 78 (285)
.++|+|+|. +. .++++...+.++..|. .+.+...+.
T Consensus 2 ~~~Igvi~~--~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~ 44 (295)
T 3lft_A 2 NAKIGVLQF--VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNS 44 (295)
T ss_dssp CEEEEEEEC--SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred ceEEEEEEc--cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecC
Confidence 578999963 43 5788888888888888 777655544
No 123
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=23.69 E-value=99 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCccceeeeHHHHHHHH---HhCCCCccEEEe-C
Q 023218 219 GLFLKCCREVAEKYPEITYEEVVIDNCCMML---VKNPAAFDVLVM-P 262 (285)
Q Consensus 219 glf~~~~~eva~~ypdV~~~~~~vDa~~~~L---v~~P~~fDVIVt-~ 262 (285)
..|.+++.+..++||+|+++...++....+| +..-..+||+.+ .
T Consensus 32 ~~~~~~~~~f~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~~~ 79 (401)
T 2heu_A 32 KTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYP 79 (401)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHTTCCCSEEECCT
T ss_pred HHHHHHHHHHHHHCcCeEEEEEeCCcHHHHHHHHHhcCCCCCEEEecC
Confidence 5688888888889999999988776543332 334457899988 5
No 124
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=23.69 E-value=1.8e+02 Score=24.66 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=34.1
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHh--CCCccceeeeHHHHHHHHHhC---CCCccEEEeCCc
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK--YPEITYEEVVIDNCCMMLVKN---PAAFDVLVMPNL 264 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~--ypdV~~~~~~vDa~~~~Lv~~---P~~fDVIVt~Nl 264 (285)
++.+|+..+..+||.+|.+.-+ .+.+++.+++ ..+|++.+ -|+. .+... ++.||+|++.+.
T Consensus 95 ~i~la~~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~l~~v~~~~--~d~~--~~~~~~~~~~~fD~I~s~a~ 160 (249)
T 3g89_A 95 GLPLKIVRPELELVLVDATRKK-------VAFVERAIEVLGLKGARALW--GRAE--VLAREAGHREAYARAVARAV 160 (249)
T ss_dssp HHHHHHHCTTCEEEEEESCHHH-------HHHHHHHHHHHTCSSEEEEE--CCHH--HHTTSTTTTTCEEEEEEESS
T ss_pred HHHHHHHCCCCEEEEEECCHHH-------HHHHHHHHHHhCCCceEEEE--CcHH--HhhcccccCCCceEEEECCc
Confidence 4566666556789999854432 3334444443 23444444 3432 33332 378999998653
No 125
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=23.62 E-value=2.4e+02 Score=23.97 Aligned_cols=38 Identities=3% Similarity=-0.039 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCcc---HHHHHHHHHHHHHcCC----CeEEEEEec
Q 023218 40 TPITATLFPGDGIG---PEIAESVKQVFRTAEV----PVEWEEHYV 78 (285)
Q Consensus 40 ~~~~IavipGDGIG---pEV~~aa~~VL~a~~~----~ie~~~~~~ 78 (285)
+.++|+++| +=-. .++++...+.++..|. ++.+...+.
T Consensus 7 ~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~ 51 (302)
T 2qh8_A 7 KTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTA 51 (302)
T ss_dssp CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEEC
T ss_pred CCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence 568999997 3222 5778888888888877 777655544
No 126
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=23.58 E-value=3.3e+02 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcCC
Q 023218 186 SLRVAEYAFHYAKTHGRERVSAIHKAN 212 (285)
Q Consensus 186 ~eRIar~AFe~A~~r~~~~Vt~v~KaN 212 (285)
+++.+++|+++|+..+ .+|+++|=..
T Consensus 154 s~~al~~a~~la~~~~-a~l~ll~v~~ 179 (290)
T 3mt0_A 154 HAGIISHAYDIAGLAK-ATLHVISAHP 179 (290)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcC-CeEEEEEEec
Confidence 7899999999999874 6788886433
No 127
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=22.69 E-value=68 Score=27.14 Aligned_cols=58 Identities=19% Similarity=0.043 Sum_probs=39.8
Q ss_pred ceEEEEEc-CCC--ccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 41 PITATLFP-GDG--IGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 41 ~~~Iavip-GDG--IGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
..+|++|| +-| --.|-+....+.|+.+|++++. .++-. .-+++..+.++++|+++++-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~--~~i~~--------~~~~~~~~~l~~ad~I~l~G 87 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE--LDIAT--------ESLGEITTKLRKNDFIYVTG 87 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE--CCTTT--------SCHHHHHHHHHHSSEEEECC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE--EEecC--------CChHHHHHHHHhCCEEEECC
Confidence 47999998 222 1236889999999999986553 22211 12455668899999999854
No 128
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=22.59 E-value=2.2e+02 Score=23.81 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
.+.+|++|-|---=-++++++.++|+.+|+++|.
T Consensus 11 ~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev 44 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEA 44 (173)
T ss_dssp SSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEE
Confidence 4568999988777788999999999999988553
No 129
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=21.91 E-value=95 Score=24.97 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEE
Q 023218 38 DITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWE 74 (285)
Q Consensus 38 ~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~ 74 (285)
++..++|+++-.||.-..=.....++|+..++++++.
T Consensus 6 ~~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~v 42 (190)
T 2vrn_A 6 DLTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELI 42 (190)
T ss_dssp CCTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3456899999999987654555678888887665543
No 130
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=21.42 E-value=2.5e+02 Score=24.11 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=16.6
Q ss_pred CCCCccEEEeCCch------hhHHhhhhhhcc
Q 023218 252 NPAAFDVLVMPNLY------GDIISDLCAGLI 277 (285)
Q Consensus 252 ~P~~fDVIVt~Nlf------GDILSDlaa~l~ 277 (285)
.+..||+|++.+.+ ..++..+...|.
T Consensus 160 ~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 160 GLQRFQVVLLADLLSFHQAHDALLRSVKMLLA 191 (281)
T ss_dssp SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred cCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence 45789999986643 345655555554
No 131
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.42 E-value=2e+02 Score=24.05 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=22.1
Q ss_pred ccccCCCCceEEEEEcCCC---ccHHHHHHHHHHHHHcCCC-eEE
Q 023218 33 RAFSSDITPITATLFPGDG---IGPEIAESVKQVFRTAEVP-VEW 73 (285)
Q Consensus 33 ~~~s~~~~~~~IavipGDG---IGpEV~~aa~~VL~a~~~~-ie~ 73 (285)
|++.+. ++++|+++--+- --.++.....+.++..|.. +.+
T Consensus 3 r~L~~~-~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 46 (277)
T 3hs3_A 3 LTLYQK-KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALIS 46 (277)
T ss_dssp -----C-CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhhcC-CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEE
Confidence 444333 568899885442 3346677777777777765 443
No 132
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=21.31 E-value=1.1e+02 Score=26.72 Aligned_cols=61 Identities=7% Similarity=-0.094 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEE
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLK 106 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~ 106 (285)
..++|+++.+|-.. ....+.|...++++.++ .+..+.+...+..+.++..+.++++|+++.
T Consensus 6 ~~mki~v~~~~~~~----~~~~~~L~~~g~~v~~~--~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~ 66 (300)
T 2rir_A 6 TGLKIAVIGGDARQ----LEIIRKLTEQQADIYLV--GFDQLDHGFTGAVKCNIDEIPFQQIDSIIL 66 (300)
T ss_dssp CSCEEEEESBCHHH----HHHHHHHHHTTCEEEEE--SCTTSSCCCTTEEECCGGGSCGGGCSEEEC
T ss_pred cCCEEEEECCCHHH----HHHHHHHHhCCCEEEEE--eccccccccccceeccchHHHHhcCCEEEe
Confidence 45689999887433 34445567777776553 222222222222233444567888999886
No 133
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=21.24 E-value=2.1e+02 Score=25.59 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCccH-HHHHHHHHHHHHcCC-CeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECC
Q 023218 41 PITATLFPGDGIGP-EIAESVKQVFRTAEV-PVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGP 108 (285)
Q Consensus 41 ~~~IavipGDGIGp-EV~~aa~~VL~a~~~-~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Ga 108 (285)
+.+|++||=..--| +..+...+.++.+|+ .++. .++-. ..+.-.++..+.++++|+++++-
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~--L~i~~-----r~~a~~~~~~~~l~~ad~I~v~G 118 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKV--LDIRD-----RAQGDDSGYRLFVEQCTGIFMTG 118 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEE--CCCCS-----GGGGGCHHHHHHHHHCSEEEECC
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEE--EEecC-----ccccCCHHHHHHHhcCCEEEECC
Confidence 47999998655334 577888888888887 4543 22211 01122455678999999999975
No 134
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=21.24 E-value=1.3e+02 Score=27.65 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=37.9
Q ss_pred CcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHH--HHHHHHhCCCCccEEEeCCc
Q 023218 203 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN--CCMMLVKNPAAFDVLVMPNL 264 (285)
Q Consensus 203 ~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa--~~~~Lv~~P~~fDVIVt~Nl 264 (285)
..|++..=++ ++ ..|.++..+..+++|+|+++..+--+ +..|+...-..+||++..+.
T Consensus 43 ~~L~V~~a~s-l~---~~~~~l~~~Fe~~~pgv~V~~~~ggSg~l~~qi~e~G~~aDVf~sad~ 102 (354)
T 3k6v_A 43 EVLTVFHAGS-LS---VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 102 (354)
T ss_dssp CEEEEEEEGG-GH---HHHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred CcEEEEEecc-hH---HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhcCCCccEEEECCH
Confidence 3466654332 21 36777777777888998888776554 44555555568998888765
No 135
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=21.17 E-value=3.4e+02 Score=22.18 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeH--HHHHHHHHhCCCCccEEEeCC
Q 023218 202 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVI--DNCCMMLVKNPAAFDVLVMPN 263 (285)
Q Consensus 202 ~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~v--Da~~~~Lv~~P~~fDVIVt~N 263 (285)
..+|++.--..+. ..++-....+..++||+|.++-... +.....|.. +.+|+.++..
T Consensus 90 ~g~l~Ig~~~~~~---~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~--g~~Dl~i~~~ 148 (294)
T 1ixc_A 90 VGELSVAYFGTPI---YRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLA--GTIHVGFSRF 148 (294)
T ss_dssp CEEEEEEECSGGG---GTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHH--TSCSEEEESC
T ss_pred CceEEEEEccchh---HHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHC--CCccEEEEec
Confidence 4567776533332 3467788888999999998876654 334444443 5778766543
No 136
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.77 E-value=1.7e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
.+.+|+||-|---=-++++++.++|+.+|+++|.
T Consensus 10 ~~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv 43 (170)
T 1xmp_A 10 MKSLVGVIMGSTSDWETMKYACDILDELNIPYEK 43 (170)
T ss_dssp -CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3568999988877789999999999999988553
No 137
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=20.77 E-value=1.7e+02 Score=22.31 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=13.8
Q ss_pred CCccEEEeCCchhh--HHhhhhhh
Q 023218 254 AAFDVLVMPNLYGD--IISDLCAG 275 (285)
Q Consensus 254 ~~fDVIVt~NlfGD--ILSDlaa~ 275 (285)
+.||+|++.+.+.. ++..+...
T Consensus 93 ~~~D~i~~~~~~~~~~~l~~~~~~ 116 (178)
T 3hm2_A 93 DNPDVIFIGGGLTAPGVFAAAWKR 116 (178)
T ss_dssp SCCSEEEECC-TTCTTHHHHHHHT
T ss_pred CCCCEEEECCcccHHHHHHHHHHh
Confidence 67898888776655 55544433
No 138
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=20.73 E-value=1e+02 Score=26.15 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=34.5
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchh
Q 023218 193 AFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYG 266 (285)
Q Consensus 193 AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 266 (285)
+..+|+. + .+|+.+|-+ .-..+.+++.++... +.++....|.....+ ++.||+|++.+.|.
T Consensus 135 ~~~l~~~-g-~~v~~vD~s-------~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 135 SLYLSLL-G-YDVTSWDHN-------ENSIAFLNETKEKEN-LNISTALYDINAANI---QENYDFIVSTVVFM 195 (286)
T ss_dssp HHHHHHT-T-CEEEEEESC-------HHHHHHHHHHHHHTT-CCEEEEECCGGGCCC---CSCEEEEEECSSGG
T ss_pred HHHHHHC-C-CeEEEEECC-------HHHHHHHHHHHHHcC-CceEEEEeccccccc---cCCccEEEEccchh
Confidence 3445544 3 479998843 333444555554432 244445555332111 67899999988775
No 139
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=20.53 E-value=87 Score=23.32 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIHKAN 212 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~KaN 212 (285)
+.+++.+++|.++|++.+ .+|+++|=..
T Consensus 13 ~~s~~al~~A~~la~~~~-a~l~ll~v~~ 40 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLTG-AELYILCVFK 40 (147)
T ss_dssp HHHHHHHHHHHHHHHHHC-CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEEec
Confidence 568899999999999864 6788887443
No 140
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.46 E-value=88 Score=23.24 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEE
Q 023218 184 QASLRVAEYAFHYAKTHGRERVSAIH 209 (285)
Q Consensus 184 ~~~eRIar~AFe~A~~r~~~~Vt~v~ 209 (285)
+.+++.+++|.++|++.+ .+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~-a~l~ll~ 37 (137)
T 2z08_A 13 EHARRAAEVAKAEAEAHG-ARLIVVH 37 (137)
T ss_dssp HHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcC-CEEEEEE
Confidence 567899999999998864 6787776
No 141
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.43 E-value=2.3e+02 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=21.9
Q ss_pred CceEEEEEcCC---CccHHHHHHHHHHHHHcCCCeEE
Q 023218 40 TPITATLFPGD---GIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 40 ~~~~IavipGD---GIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.++|+++-.| ---.++.....+.++..|..+.+
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 103 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVV 103 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45789888443 34456777777777766666543
No 142
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=20.40 E-value=74 Score=25.05 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=29.9
Q ss_pred CccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhh
Q 023218 234 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD 271 (285)
Q Consensus 234 dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSD 271 (285)
+|.+.....+...-+|..|-+.++|.|-+|- ||=+.|
T Consensus 61 qv~f~~~~f~~~v~WL~~nrg~LsVLiHP~T-gddl~D 97 (117)
T 2p8i_A 61 QLAFTQEQFADLVGWLTLNHGALDIFLHPNT-GDALRD 97 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred EEEcCHHHHHHHHHHHHHhCCCCeEEEcCCC-Cchhhh
Confidence 3556666788899999999999999999998 665554
No 143
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=20.37 E-value=1.6e+02 Score=20.88 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHH
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDN 244 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa 244 (285)
|+.+.+.++.-|......+-- .+..+...+.+++++|+++.+-..-+|.
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~--~C~~~~p~l~~l~~~~~~~~~~~vd~~~ 65 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCG--PCKMIAPMIEKFSEQYPQADFYKLDVDE 65 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCH--HHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHhcCCEEEEEEECCcCH--hHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 666666543334444443332 4677888889999999998877777663
No 144
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=20.28 E-value=1.7e+02 Score=24.57 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhC--CCccceeeeHHHHHHHHHhCCCCccEEEeCCchhh
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY--PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGD 267 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~y--pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGD 267 (285)
..+|+..+..+|+.+|-+- -..+.+++-.+.. +.++ ....|.. .+...++.||+|++.+.+..
T Consensus 53 ~~l~~~~~~~~v~~vD~s~-------~~~~~a~~~~~~~~~~~~~--~~~~d~~--~~~~~~~~fD~v~~~~~l~~ 117 (276)
T 3mgg_A 53 VILAKNNPDAEITSIDISP-------ESLEKARENTEKNGIKNVK--FLQANIF--SLPFEDSSFDHIFVCFVLEH 117 (276)
T ss_dssp HHHHHHCTTSEEEEEESCH-------HHHHHHHHHHHHTTCCSEE--EEECCGG--GCCSCTTCEEEEEEESCGGG
T ss_pred HHHHHhCCCCEEEEEECCH-------HHHHHHHHHHHHcCCCCcE--EEEcccc--cCCCCCCCeeEEEEechhhh
Confidence 4445543346788887432 2233344433332 3333 3333332 23334578999999887754
No 145
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=20.22 E-value=1.2e+02 Score=24.06 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHH
Q 023218 194 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDII 269 (285)
Q Consensus 194 Fe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDIL 269 (285)
..+++. +..+|+.+|-+- -..+.+++-.+..+.+.+.. .|... +-..++.||+|++.+.+.-+.
T Consensus 58 ~~l~~~-~~~~v~~~D~s~-------~~~~~a~~~~~~~~~i~~~~--~d~~~--~~~~~~~fD~v~~~~~~~~~~ 121 (215)
T 2pxx_A 58 YELFLG-GFPNVTSVDYSS-------VVVAAMQACYAHVPQLRWET--MDVRK--LDFPSASFDVVLEKGTLDALL 121 (215)
T ss_dssp HHHHHT-TCCCEEEEESCH-------HHHHHHHHHTTTCTTCEEEE--CCTTS--CCSCSSCEEEEEEESHHHHHT
T ss_pred HHHHHc-CCCcEEEEeCCH-------HHHHHHHHhcccCCCcEEEE--cchhc--CCCCCCcccEEEECcchhhhc
Confidence 344444 444799988432 22233333333334454433 33221 222346899999988875443
No 146
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.21 E-value=2.4e+02 Score=23.41 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
+.+|++|-|.--=-++++++.++|+.+|+++|.
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev 35 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEK 35 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 357999988777789999999999999998554
No 147
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=20.07 E-value=3e+02 Score=21.80 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=43.5
Q ss_pred EEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEE-cCCccccccHHHHHHHHHHHHhCCCcc
Q 023218 175 VESLKIITRQASLRVAEYAFHYAKTHGRERVSAIH-KANIMQKTDGLFLKCCREVAEKYPEIT 236 (285)
Q Consensus 175 a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~-KaNvl~~t~glf~~~~~eva~~ypdV~ 236 (285)
-.++.=.|.+++.......++-|..+|.+.|.++| |.+--+...+.-+..+.++-+++|.|.
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~ 111 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQ 111 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCcee
Confidence 45666678899999999999999998888899998 332111111256666777767777664
No 148
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=20.04 E-value=1.9e+02 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEE
Q 023218 41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEW 73 (285)
Q Consensus 41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~ 73 (285)
..+|+||-|---=-++++++.++|+.+|+++|.
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv 53 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHET 53 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEE
Confidence 457999998877789999999999999988543
Done!