Query 023219
Match_columns 285
No_of_seqs 194 out of 1705
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 1.3E-54 2.9E-59 380.7 32.7 262 12-275 1-262 (262)
2 KOG2620 Prohibitins and stomat 100.0 4.2E-52 9.2E-57 346.5 17.6 281 1-284 1-295 (301)
3 PRK11029 FtsH protease regulat 100.0 3.1E-48 6.8E-53 347.1 31.6 252 3-264 16-320 (334)
4 PRK10930 FtsH protease regulat 100.0 1.1E-47 2.4E-52 352.3 32.4 249 4-263 94-346 (419)
5 TIGR01933 hflK HflK protein. H 100.0 4.9E-47 1.1E-51 333.0 31.6 248 7-264 1-252 (261)
6 TIGR01932 hflC HflC protein. H 100.0 1.9E-46 4E-51 336.6 32.6 252 3-264 16-310 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 5.5E-46 1.2E-50 323.0 29.4 234 7-249 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 4.3E-45 9.3E-50 321.6 28.9 239 4-250 12-266 (266)
9 COG0330 HflC Membrane protease 100.0 3.1E-41 6.7E-46 300.8 31.3 256 4-266 18-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 6E-40 1.3E-44 280.2 27.7 213 10-261 1-214 (215)
11 cd03406 Band_7_3 A subgroup of 100.0 3.9E-37 8.4E-42 269.4 26.5 195 4-201 2-212 (280)
12 cd03401 Band_7_prohibitin Band 100.0 1.8E-37 3.9E-42 261.3 22.8 190 6-205 1-194 (196)
13 cd03402 Band_7_2 A subgroup of 100.0 8E-36 1.7E-40 254.0 22.6 170 6-180 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 2.5E-35 5.3E-40 249.1 14.4 221 3-264 51-274 (288)
15 smart00244 PHB prohibitin homo 100.0 7.6E-31 1.6E-35 213.4 19.4 156 5-164 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 3.7E-31 7.9E-36 219.0 15.3 170 8-181 1-178 (179)
17 KOG3090 Prohibitin-like protei 99.9 2.8E-26 6.2E-31 187.7 17.8 235 2-263 33-273 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 4.2E-25 9E-30 180.8 9.6 233 5-266 25-266 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 1.1E-22 2.5E-27 172.5 13.9 158 4-164 13-206 (207)
20 KOG2962 Prohibitin-related mem 99.9 1.4E-19 3.1E-24 149.2 21.3 193 4-199 20-228 (322)
21 KOG2668 Flotillins [Intracellu 99.9 2.4E-19 5.3E-24 155.7 23.5 157 7-167 2-170 (428)
22 cd03400 Band_7_1 A subgroup of 99.8 1.6E-19 3.4E-24 141.0 11.7 118 47-164 3-123 (124)
23 cd03399 Band_7_flotillin Band_ 99.8 2.8E-18 6E-23 134.7 11.1 116 47-162 2-125 (128)
24 COG2268 Uncharacterized protei 99.8 1.7E-16 3.7E-21 147.9 22.3 192 6-199 33-249 (548)
25 cd02106 Band_7 The band 7 doma 99.7 1.9E-15 4.1E-20 116.3 14.0 111 52-164 7-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 3E-12 6.5E-17 108.4 18.0 157 5-165 14-207 (211)
27 COG4260 Membrane protease subu 99.0 9E-09 2E-13 88.1 15.0 159 5-165 39-234 (345)
28 PTZ00491 major vault protein; 99.0 8.5E-08 1.8E-12 93.9 22.2 153 7-162 464-650 (850)
29 cd03405 Band_7_HflC Band_7_Hfl 97.3 0.0012 2.7E-08 57.1 8.1 46 178-223 164-209 (242)
30 PF12127 YdfA_immunity: SigmaW 96.9 0.031 6.8E-07 48.5 13.2 108 47-161 120-229 (316)
31 PRK13665 hypothetical protein; 96.9 0.011 2.3E-07 51.0 10.0 108 47-161 125-234 (316)
32 cd03404 Band_7_HflK Band_7_Hfl 96.7 0.018 3.9E-07 50.6 10.4 73 145-224 161-234 (266)
33 TIGR01932 hflC HflC protein. H 96.6 0.011 2.4E-07 53.4 8.5 44 178-221 219-262 (317)
34 PRK11029 FtsH protease regulat 96.5 0.014 3.1E-07 53.0 8.9 72 145-223 202-274 (334)
35 cd03407 Band_7_4 A subgroup of 96.5 0.01 2.2E-07 52.1 7.8 51 175-225 152-202 (262)
36 TIGR01933 hflK HflK protein. H 96.5 0.018 3.9E-07 50.5 9.0 92 124-216 120-221 (261)
37 PF11978 MVP_shoulder: Shoulde 96.3 0.029 6.3E-07 42.4 7.8 95 59-153 10-116 (118)
38 PRK10930 FtsH protease regulat 95.8 0.083 1.8E-06 49.5 10.3 33 184-216 263-295 (419)
39 KOG2620 Prohibitins and stomat 95.6 0.033 7.2E-07 48.0 5.9 51 165-215 178-228 (301)
40 COG2268 Uncharacterized protei 94.6 0.54 1.2E-05 45.2 11.7 74 189-264 411-492 (548)
41 COG1580 FliL Flagellar basal b 94.2 0.59 1.3E-05 37.8 9.6 80 65-152 76-157 (159)
42 COG0330 HflC Membrane protease 92.8 0.43 9.2E-06 42.4 7.4 50 174-224 181-230 (291)
43 PRK01558 V-type ATP synthase s 90.2 2.2 4.8E-05 35.8 8.6 41 166-206 19-59 (198)
44 cd03401 Band_7_prohibitin Band 88.6 1.4 3.1E-05 36.5 6.3 25 193-217 171-195 (196)
45 PRK06568 F0F1 ATP synthase sub 88.6 10 0.00023 30.4 10.9 12 236-247 129-140 (154)
46 KOG2668 Flotillins [Intracellu 88.2 2.1 4.6E-05 38.7 7.2 85 175-264 295-385 (428)
47 PRK01558 V-type ATP synthase s 87.0 9.5 0.00021 31.9 10.3 40 176-215 18-57 (198)
48 PRK01005 V-type ATP synthase s 86.7 5.3 0.00012 33.8 8.6 46 166-211 24-69 (207)
49 PRK01005 V-type ATP synthase s 86.1 19 0.00041 30.5 11.6 36 167-202 36-71 (207)
50 PRK07718 fliL flagellar basal 85.9 5.4 0.00012 31.5 7.8 50 100-151 88-139 (142)
51 PRK06654 fliL flagellar basal 85.8 9.7 0.00021 31.4 9.3 84 59-152 92-177 (181)
52 PRK05697 flagellar basal body- 85.7 6.7 0.00015 30.9 8.2 53 99-151 78-134 (137)
53 PF03748 FliL: Flagellar basal 85.2 12 0.00026 27.1 10.9 52 98-151 43-96 (99)
54 TIGR01147 V_ATP_synt_G vacuola 84.4 9.6 0.00021 28.9 8.1 40 160-199 7-46 (113)
55 cd03403 Band_7_stomatin_like B 83.4 2.8 6.1E-05 35.2 5.6 29 187-215 154-182 (215)
56 PLN03086 PRLI-interacting fact 83.4 4.6 0.0001 39.3 7.5 23 237-262 76-98 (567)
57 PRK07021 fliL flagellar basal 82.1 18 0.00038 29.3 9.5 53 99-151 103-159 (162)
58 PRK12785 fliL flagellar basal 82.1 11 0.00023 30.8 8.2 53 98-152 110-164 (166)
59 PRK02292 V-type ATP synthase s 81.9 19 0.0004 29.7 9.8 34 165-198 10-43 (188)
60 COG4864 Uncharacterized protei 81.8 22 0.00047 30.3 9.9 93 61-160 139-232 (328)
61 COG2811 NtpF Archaeal/vacuolar 80.9 21 0.00046 26.8 10.0 43 159-201 7-49 (108)
62 PRK08404 V-type ATP synthase s 80.0 14 0.0003 27.5 7.6 36 160-195 4-39 (103)
63 KOG3083 Prohibitin [Posttransl 79.1 2.6 5.6E-05 35.8 3.7 23 199-221 202-224 (271)
64 PRK05696 fliL flagellar basal 78.9 28 0.00062 28.3 9.8 54 98-151 110-167 (170)
65 TIGR01147 V_ATP_synt_G vacuola 78.8 23 0.0005 26.9 8.4 39 172-210 8-46 (113)
66 PRK08455 fliL flagellar basal 78.5 19 0.00041 29.8 8.6 52 98-151 126-179 (182)
67 PRK08404 V-type ATP synthase s 78.4 25 0.00054 26.1 10.0 21 183-203 42-62 (103)
68 PF03179 V-ATPase_G: Vacuolar 76.8 8.3 0.00018 28.6 5.6 43 161-203 6-48 (105)
69 PRK04057 30S ribosomal protein 75.7 26 0.00057 29.5 8.8 82 58-148 100-183 (203)
70 PF03179 V-ATPase_G: Vacuolar 73.4 19 0.00041 26.7 6.8 43 174-216 8-50 (105)
71 PRK06231 F0F1 ATP synthase sub 73.2 55 0.0012 27.5 10.7 6 115-120 74-79 (205)
72 PRK09098 type III secretion sy 72.3 23 0.0005 30.5 7.9 35 170-204 40-74 (233)
73 KOG3090 Prohibitin-like protei 69.1 4.7 0.0001 34.3 2.8 64 140-205 178-241 (290)
74 PRK14471 F0F1 ATP synthase sub 68.4 60 0.0013 26.0 10.4 9 113-121 32-40 (164)
75 TIGR02926 AhaH ATP synthase ar 67.1 34 0.00074 24.3 6.7 30 167-196 7-36 (85)
76 PRK08475 F0F1 ATP synthase sub 66.9 67 0.0015 26.0 9.9 18 112-129 45-63 (167)
77 TIGR03321 alt_F1F0_F0_B altern 66.0 88 0.0019 27.0 10.7 35 174-208 80-114 (246)
78 PRK09174 F0F1 ATP synthase sub 65.3 83 0.0018 26.5 10.7 17 113-129 77-94 (204)
79 TIGR03321 alt_F1F0_F0_B altern 65.2 91 0.002 26.9 10.4 9 113-121 29-37 (246)
80 PF06188 HrpE: HrpE/YscL/FliH 65.1 30 0.00065 28.8 6.9 30 169-198 30-59 (191)
81 PRK13455 F0F1 ATP synthase sub 64.8 78 0.0017 26.0 9.9 9 242-250 151-159 (184)
82 PRK09098 type III secretion sy 64.7 26 0.00056 30.2 6.6 32 167-198 48-79 (233)
83 PRK08476 F0F1 ATP synthase sub 64.1 69 0.0015 25.1 10.6 16 113-128 31-47 (141)
84 TIGR02926 AhaH ATP synthase ar 63.5 50 0.0011 23.4 8.6 25 178-202 7-31 (85)
85 PRK09173 F0F1 ATP synthase sub 63.3 75 0.0016 25.3 9.8 30 175-204 63-92 (159)
86 COG2811 NtpF Archaeal/vacuolar 63.1 42 0.0009 25.2 6.6 58 165-222 24-87 (108)
87 CHL00118 atpG ATP synthase CF0 62.6 78 0.0017 25.2 10.6 6 157-162 47-52 (156)
88 PRK14473 F0F1 ATP synthase sub 62.6 79 0.0017 25.3 10.7 9 113-121 32-40 (164)
89 COG1890 RPS1A Ribosomal protei 62.5 90 0.002 26.4 9.1 84 55-149 105-192 (214)
90 PRK13461 F0F1 ATP synthase sub 62.0 80 0.0017 25.2 8.8 9 113-121 29-37 (159)
91 PRK13428 F0F1 ATP synthase sub 60.9 93 0.002 29.6 10.2 15 236-250 144-158 (445)
92 PRK13453 F0F1 ATP synthase sub 60.6 91 0.002 25.3 10.7 11 112-122 41-51 (173)
93 PRK14474 F0F1 ATP synthase sub 60.5 1.1E+02 0.0025 26.5 10.7 31 175-205 81-111 (250)
94 cd03406 Band_7_3 A subgroup of 60.3 19 0.00041 32.0 5.2 73 126-207 124-207 (280)
95 PRK06568 F0F1 ATP synthase sub 59.8 90 0.002 25.1 9.9 18 177-194 67-84 (154)
96 PRK01194 V-type ATP synthase s 59.4 39 0.00084 28.0 6.6 8 177-184 24-31 (185)
97 PRK07352 F0F1 ATP synthase sub 58.3 99 0.0022 25.1 9.9 21 109-129 39-60 (174)
98 PRK14472 F0F1 ATP synthase sub 58.1 1E+02 0.0022 25.1 10.7 11 112-122 41-51 (175)
99 PRK14471 F0F1 ATP synthase sub 58.0 96 0.0021 24.8 10.7 6 157-162 33-38 (164)
100 PF06188 HrpE: HrpE/YscL/FliH 57.7 1.1E+02 0.0024 25.4 12.7 25 166-190 38-62 (191)
101 PRK13460 F0F1 ATP synthase sub 57.5 1E+02 0.0022 25.0 9.9 18 112-129 39-57 (173)
102 PF01015 Ribosomal_S3Ae: Ribos 57.5 49 0.0011 27.7 6.9 68 59-135 107-176 (194)
103 PRK03963 V-type ATP synthase s 57.0 1.1E+02 0.0024 25.2 11.1 10 258-267 122-131 (198)
104 PRK14475 F0F1 ATP synthase sub 56.6 1E+02 0.0023 24.8 10.6 16 114-129 35-51 (167)
105 PRK06231 F0F1 ATP synthase sub 56.3 1.2E+02 0.0026 25.5 10.7 8 269-276 191-198 (205)
106 PRK13454 F0F1 ATP synthase sub 55.9 1.1E+02 0.0025 25.0 9.4 10 113-122 55-64 (181)
107 CHL00019 atpF ATP synthase CF0 52.1 1.3E+02 0.0029 24.6 10.7 22 110-131 45-67 (184)
108 PRK09173 F0F1 ATP synthase sub 51.5 1.2E+02 0.0026 24.1 10.7 22 185-206 62-83 (159)
109 PRK06669 fliH flagellar assemb 51.2 1.3E+02 0.0029 26.4 9.1 35 166-200 85-119 (281)
110 PRK05759 F0F1 ATP synthase sub 50.4 1.2E+02 0.0027 23.8 8.8 7 115-121 30-36 (156)
111 PRK13461 F0F1 ATP synthase sub 46.2 1.5E+02 0.0032 23.6 10.7 6 244-249 131-136 (159)
112 PRK07353 F0F1 ATP synthase sub 44.8 1.4E+02 0.0031 23.0 10.7 7 114-120 30-36 (140)
113 COG0711 AtpF F0F1-type ATP syn 44.1 1.7E+02 0.0036 23.5 9.7 6 157-162 31-36 (161)
114 PRK06569 F0F1 ATP synthase sub 42.7 1.8E+02 0.0039 23.4 9.2 9 241-249 125-133 (155)
115 PRK05759 F0F1 ATP synthase sub 41.3 1.7E+02 0.0038 22.9 10.7 6 245-250 131-136 (156)
116 PTZ00491 major vault protein; 41.2 1.3E+02 0.0029 30.9 8.1 19 7-25 491-511 (850)
117 PRK13455 F0F1 ATP synthase sub 40.6 2E+02 0.0044 23.5 10.7 18 113-130 51-69 (184)
118 COG4396 Mu-like prophage host- 40.3 51 0.0011 25.9 4.0 60 71-144 94-154 (170)
119 PTZ00399 cysteinyl-tRNA-synthe 40.2 3.2E+02 0.007 27.5 10.7 36 128-163 519-559 (651)
120 PRK14474 F0F1 ATP synthase sub 38.2 2.7E+02 0.0058 24.2 13.6 9 240-248 151-159 (250)
121 TIGR03825 FliH_bacil flagellar 37.8 2.1E+02 0.0046 24.8 8.1 13 256-268 176-188 (255)
122 KOG0742 AAA+-type ATPase [Post 37.4 3.6E+02 0.0079 25.7 9.6 20 186-205 209-228 (630)
123 COG1390 NtpE Archaeal/vacuolar 37.1 2.5E+02 0.0054 23.5 11.1 7 243-249 111-117 (194)
124 PRK13428 F0F1 ATP synthase sub 35.5 4E+02 0.0086 25.3 12.1 16 114-129 26-42 (445)
125 KOG1772 Vacuolar H+-ATPase V1 35.3 1.9E+02 0.0041 21.6 7.0 38 161-198 8-45 (108)
126 PRK15322 invasion protein OrgB 35.2 2.8E+02 0.006 23.4 13.1 29 173-201 16-44 (210)
127 PRK06569 F0F1 ATP synthase sub 33.1 2.6E+02 0.0056 22.5 10.5 13 184-196 69-81 (155)
128 PRK15354 type III secretion sy 33.0 2.6E+02 0.0055 23.8 7.3 48 173-220 34-81 (224)
129 PRK06669 fliH flagellar assemb 32.6 3.5E+02 0.0075 23.8 10.1 8 242-249 195-202 (281)
130 TIGR03825 FliH_bacil flagellar 30.5 1.6E+02 0.0034 25.6 6.1 22 175-196 46-67 (255)
131 COG0711 AtpF F0F1-type ATP syn 30.4 2.9E+02 0.0062 22.2 10.6 18 112-129 29-47 (161)
132 KOG0994 Extracellular matrix g 30.1 6.3E+02 0.014 27.5 10.7 19 187-205 1446-1464(1758)
133 KOG1749 40S ribosomal protein 28.7 63 0.0014 24.6 2.8 32 5-36 89-122 (143)
134 PRK07353 F0F1 ATP synthase sub 27.8 2.8E+02 0.0061 21.3 10.0 7 157-163 30-36 (140)
135 PRK15322 invasion protein OrgB 27.2 1.9E+02 0.0042 24.3 5.6 42 219-267 83-124 (210)
136 PRK03963 V-type ATP synthase s 26.8 3.6E+02 0.0077 22.1 14.7 14 254-267 121-134 (198)
137 PF01991 vATP-synt_E: ATP synt 26.3 3.5E+02 0.0076 21.9 10.2 13 237-249 98-110 (198)
138 PRK06328 type III secretion sy 25.7 2.5E+02 0.0053 24.0 6.3 26 242-270 121-146 (223)
139 PF03780 Asp23: Asp23 family; 25.4 1.3E+02 0.0028 21.9 4.1 25 124-148 77-102 (108)
140 PF10056 DUF2293: Uncharacteri 25.2 2.5E+02 0.0054 20.1 5.3 46 93-140 38-86 (86)
141 PRK12613 galactose-6-phosphate 23.6 63 0.0014 25.6 2.1 31 125-155 11-41 (141)
142 COG1302 Uncharacterized protei 22.8 1.3E+02 0.0029 23.4 3.7 35 122-156 82-119 (131)
143 CHL00019 atpF ATP synthase CF0 21.5 4.5E+02 0.0098 21.4 13.6 25 178-202 103-127 (184)
144 PF05103 DivIVA: DivIVA protei 20.9 32 0.0007 26.2 0.0 34 184-217 78-111 (131)
145 PTZ00321 ribosomal protein L11 20.8 4.5E+02 0.0098 23.8 7.0 41 107-147 144-195 (342)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.3e-54 Score=380.65 Aligned_cols=262 Identities=65% Similarity=0.947 Sum_probs=249.2
Q ss_pred CCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCCCcccCCCcEEEEEEEEEEEEccchhhhhhcccc
Q 023219 12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS 91 (285)
Q Consensus 12 ~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~ 91 (285)
+|++|||++||+++++++||+||++||+ +++...++++.+.++++.+++|+|++.|.|+++++|||.||.+.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 5899999999999999999999999996 566457899999999998899999999999999999999987778999999
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 023219 92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 171 (285)
Q Consensus 92 ~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~ 171 (285)
++...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|++|.||+++.++|++++.|+|++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023219 172 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 251 (285)
Q Consensus 172 ~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~ 251 (285)
++.+.+||+++...+..|+|++++.+++|+|+|++.++.|+|+++++..+.++++..++++++++++..+|+|+|+++++
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999876777888999999999999999997
Q ss_pred CCCCcEEEEcCCCCchhhHHHHHH
Q 023219 252 SSKTNSVFIPHGPGAVKDIASQIR 275 (285)
Q Consensus 252 ~~~~~~i~lp~~~~~~~~~~~~~~ 275 (285)
+++ +++++|.+++++.+++.+|+
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~~ 262 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQIR 262 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhcC
Confidence 654 89999999999999998874
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=4.2e-52 Score=346.48 Aligned_cols=281 Identities=42% Similarity=0.615 Sum_probs=257.8
Q ss_pred CCCcceEEE--ecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecC-CCcccCCCcEEEEEEEEEEE
Q 023219 1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQYR 77 (285)
Q Consensus 1 ~~~~~~~~~--V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~-~~v~T~D~~~v~v~~~v~yr 77 (285)
||-.+||.+ ||+.+++|+.||||+.++++||+||++|++ +++.+..+++...+..+ ++..|+||+.+.++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 566778876 999999999999999999999999999997 56556666655555544 59999999999999999999
Q ss_pred EccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHH
Q 023219 78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHV 157 (285)
Q Consensus 78 I~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v 157 (285)
|.||...+++|+++||+.+|.+++++.+|+.++++++|.++..|+.++..|.+.+++.+..||+.+....|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99986666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC----------
Q 023219 158 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG---------- 227 (285)
Q Consensus 158 ~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~---------- 227 (285)
.++|+.+..|+|.++|++.++|++++.++.+|||++++.++..+|.+..+.++++|+++++..++++.++
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred -CChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCCCchhhHHHHHHHHHhhhccC
Q 023219 228 -TSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 284 (285)
Q Consensus 228 -~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
.++.++.+++...+|+.+..+++ +.++++|+|+++++..+|.+|.+.++.+...+
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 23556678889999999999997 46889999999999999999999999987654
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=3.1e-48 Score=347.09 Aligned_cols=252 Identities=17% Similarity=0.213 Sum_probs=226.4
Q ss_pred CcceEEEecCCeEEEEeecCeeee-------eeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEE
Q 023219 3 QALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV 74 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~-------~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v 74 (285)
+++|+++|++||+|||++||++.+ +++||+||++||+ +++ ..+|+|.+.++.+. .++|+|+..|.||+++
T Consensus 16 l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V 93 (334)
T PRK11029 16 LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYI 93 (334)
T ss_pred HHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEE
Confidence 357999999999999999999986 4899999999996 676 58999999999985 8999999999999999
Q ss_pred EEEEccchhhhhhccc--cC---hHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHH-------------
Q 023219 75 QYRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKA------------- 135 (285)
Q Consensus 75 ~yrI~~~~~~~~~~~~--~~---~~~~l~~~~~~~lr~vi~~~~~~~l~~-~R~~i~~~i~~~l~~~------------- 135 (285)
+|||.|| .++++.+ .| +...|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 94 ~yrI~Dp--~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 94 KWRISDF--SRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred EEEECCH--HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 9999985 4554432 23 346788999999999999999999997 5999999999999964
Q ss_pred --------------------------hhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023219 136 --------------------------MSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRA 189 (285)
Q Consensus 136 --------------------------l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~A 189 (285)
+.+|||+|.+|.|+++.||+++.++|++++.|+|++++...+|||++.+..+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a 251 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRA 251 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCC
Q 023219 190 EGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGP 264 (285)
Q Consensus 190 eaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
+|+.++.++.|+|++++.+++|+|++++++.++++|.. .| .++.+++||++|++++++ +++++++|++.
T Consensus 252 ~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~--~p---~~~~~~~~lea~~~~~~~-~~~~~vl~~~~ 320 (334)
T PRK11029 252 TADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ--DP---DFYAFIRSLRAYENSFSG-NQDVMVLSPDS 320 (334)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHHHHhcC-CCcEEEECCCh
Confidence 99999999999999999999999999999999999862 33 478889999999999863 45789999874
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.1e-47 Score=352.32 Aligned_cols=249 Identities=20% Similarity=0.278 Sum_probs=223.6
Q ss_pred cceEEEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeec-CCCcccCCCcEEEEEEEEEEEEccch
Q 023219 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEK 82 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~-~~~v~T~D~~~v~v~~~v~yrI~~~~ 82 (285)
++|||+|+++|+|||++||++.++++||+||++||| ++| ..++++...... +..++|+|++.|.|+++|+|||.|
T Consensus 94 ~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V-~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D-- 169 (419)
T PRK10930 94 ASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEV-KPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD-- 169 (419)
T ss_pred HheEEEECCCeEEEEEECCcCcceeCCceEEecCce-EEE-EEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC--
Confidence 579999999999999999999999999999999996 566 467776654332 348999999999999999999998
Q ss_pred hhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCCHHHHH
Q 023219 83 ASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKR 159 (285)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~-R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~v~~ 159 (285)
+.+++|++.+++..|.+.++++||+++|+++++++++. |++|...+++.|++.+++| ||+|.+|.|+++.||+++.+
T Consensus 170 p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~ 249 (419)
T PRK10930 170 PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKA 249 (419)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHH
Confidence 46789999999999999999999999999999999985 9999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023219 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (285)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (285)
||++++.|++++++.+.+||++++..+.+|+++|++.+.+|+|++++.+++|+|+++++..++.+|. ..|+.++.
T Consensus 250 Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr~--- 324 (419)
T PRK10930 250 AFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITRE--- 324 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHHH---
Confidence 9999999999999999999999999999999999999999999999999999999999888888886 45665444
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCC
Q 023219 240 TQYFDTMKEIGASSKTNSVFIPHG 263 (285)
Q Consensus 240 ~~~le~l~~~~~~~~~~~i~lp~~ 263 (285)
..|||+|+++++ +.+.|+++.+
T Consensus 325 RlYletme~vl~--~~~kvivd~~ 346 (419)
T PRK10930 325 RLYIETMEKVLG--HTRKVLVNDK 346 (419)
T ss_pred HHHHHHHHHHHc--cCCEEEEeCC
Confidence 559999999996 3344555443
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=4.9e-47 Score=333.01 Aligned_cols=248 Identities=18% Similarity=0.258 Sum_probs=224.8
Q ss_pred EEEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEE-eecCCCcccCCCcEEEEEEEEEEEEccchhhh
Q 023219 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQ-LDVRCETKTKDNVFVNVVASVQYRALAEKASD 85 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~-~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~ 85 (285)
+|+|++||+|||++||++.++++||+||++||+ +++ +.++++... +..+..++|+|++.|.|+++++|||.|| .+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~--~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDP--YK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCc-eEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCH--HH
Confidence 589999999999999999999999999999996 566 578886544 2222368999999999999999999984 67
Q ss_pred hhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCCHHHHHHHH
Q 023219 86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMN 162 (285)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~v~~a~~ 162 (285)
++|++.+++..|.+.+++++|+++|+++++++++ +|++|.+.+.+.+++.++.| ||.|++|.|+++.||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 8899999999999999999999999999999998 79999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 023219 163 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQY 242 (285)
Q Consensus 163 ~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~ 242 (285)
+++.|++++++.+.+|+++++..+.+|++++++.+++|+|++++.+++|+|+++++..++++|.. .| +++.+++|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999862 34 46677889
Q ss_pred HHHHHHHhcCCCCcEEEEcCCC
Q 023219 243 FDTMKEIGASSKTNSVFIPHGP 264 (285)
Q Consensus 243 le~l~~~~~~~~~~~i~lp~~~ 264 (285)
||+|+++++ +++++++++++.
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~ 252 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCC
Confidence 999999985 456778887764
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.9e-46 Score=336.60 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=224.8
Q ss_pred CcceEEEecCCeEEEEeecCeeeeee-------CCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEE
Q 023219 3 QALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASV 74 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~~-------~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v 74 (285)
+++||++|++||+||+++||++.++. +||+||++||+ +++ ..+|++.+.++.+. .++|+|+++|.|++++
T Consensus 16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V 93 (317)
T TIGR01932 16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI 93 (317)
T ss_pred HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence 35799999999999999999998654 79999999996 566 58999999999876 8999999999999999
Q ss_pred EEEEccchhhhhhcccc--C---hHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHH------------------------
Q 023219 75 QYRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDI------------------------ 124 (285)
Q Consensus 75 ~yrI~~~~~~~~~~~~~--~---~~~~l~~~~~~~lr~vi~~~~~~~l~~~-R~~i------------------------ 124 (285)
+|||.|+ .++++++. + ++..|.+.+++++|+++|++++++++++ |++|
T Consensus 94 ~yrV~d~--~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 94 RWRIEDF--KKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEEECCH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 9999984 56666544 3 4567999999999999999999999975 5555
Q ss_pred -----HHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023219 125 -----AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 125 -----~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
...+.+.+.+.+.+|||.|++|.|+++.||+++.++|.+++.|+|++++...++++++.+..+.|+|++++.++.
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ 251 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKIL 251 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCC
Q 023219 200 GLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGP 264 (285)
Q Consensus 200 Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
|+|++++.+++|+|++++++.++++|.. +| .++.+++|||+|++++++ +++++++|++.
T Consensus 252 aeA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~~~~~~le~~~~~~~~-~~~~~vl~~~~ 310 (317)
T TIGR01932 252 SEAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFYSFWRSLEAYEKSFKD-NQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHHHHHHHHHHHHHHhCC-CCCEEEECCCc
Confidence 9999999999999999999999999973 34 466678899999999863 56689999874
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.5e-46 Score=323.03 Aligned_cols=234 Identities=20% Similarity=0.244 Sum_probs=215.0
Q ss_pred EEEecCCeEEEEeecCeeee-eeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhh
Q 023219 7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS 84 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~-~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~ 84 (285)
||+|++||+||+++||++.+ +++||+||++||+ +.+ +.++++.+.++++. .+.|+|++++.+++++.|||.|| .
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence 58999999999999999987 6899999999997 455 68999999988764 89999999999999999999985 4
Q ss_pred hhhccccChH----HHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHH
Q 023219 85 DAFYKLSNTR----SQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (285)
Q Consensus 85 ~~~~~~~~~~----~~l~~~~~~~lr~vi~~~~~~~l~~~-R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ 159 (285)
++++.+.++. ..|.+.+++++|+++|++++++++++ |++|++.+.+.|++.+++|||+|.+|.|++|.||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 6666665543 67899999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023219 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (285)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (285)
+|++++.|+|++.+++.+||+++++.++.|++++++.++.|+|+|++.+++|+|++++++.+++++.. +|+ ++.+
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999973 454 6777
Q ss_pred HHHHHHHHHH
Q 023219 240 TQYFDTMKEI 249 (285)
Q Consensus 240 ~~~le~l~~~ 249 (285)
+++|++|+.+
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 8899999875
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=4.3e-45 Score=321.62 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=213.8
Q ss_pred cceEEEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEE----------Ee--ec-CCCcccCCCcEEEE
Q 023219 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QL--DV-RCETKTKDNVFVNV 70 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~----------~~--~~-~~~v~T~D~~~v~v 70 (285)
++||++|++||+|||++||++.++++||+||++||+. .+...++++.+ .. .. +..++|+|+..|.+
T Consensus 12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v 90 (266)
T cd03404 12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPI-EVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV 90 (266)
T ss_pred HcEEEEECCCceEEeEEcCccccccCCceeEecCCCc-EEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence 5789999999999999999999999999999999974 44334433211 11 11 23789999999999
Q ss_pred EEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEE
Q 023219 71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTL 147 (285)
Q Consensus 71 ~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~-R~~i~~~i~~~l~~~l~~~--Gi~v~~v~ 147 (285)
++.+.|||.|| .++++++.+++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||.|++|.
T Consensus 91 d~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~ 168 (266)
T cd03404 91 EFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN 168 (266)
T ss_pred EEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 99999999985 5678889999999999999999999999999999997 9999999999999999977 99999999
Q ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023219 148 IVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG 227 (285)
Q Consensus 148 I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~ 227 (285)
|+++.||+++.++|++++.|++++++.+.+|++++++.+..|+|+|++.+++|+|++++..+.|+|++++++.++++|..
T Consensus 169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CChhhhHHHHHHHHHHHHHHHHh
Q 023219 228 TSSKDVMDMVLVTQYFDTMKEIG 250 (285)
Q Consensus 228 ~~~~~~~~~~l~~~~le~l~~~~ 250 (285)
+|+ .+++..|++++++++
T Consensus 249 --~~~---~~~~~~~~~~~~~~~ 266 (266)
T cd03404 249 --APD---VTRERLYLETMEEVL 266 (266)
T ss_pred --ChH---HHHHHHHHHHHHHhC
Confidence 443 456677999999874
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-41 Score=300.81 Aligned_cols=256 Identities=28% Similarity=0.401 Sum_probs=230.6
Q ss_pred cceEEEecCCeEEEEeecCeeeeeeC-CcceeecCc---cceeeEEeeeeeEEEeec-CC-CcccCCCcEEEEEEEEEEE
Q 023219 4 ALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWC---LGSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQYR 77 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~-pG~h~~~P~---i~~~v~~~v~~~~~~~~~-~~-~v~T~D~~~v~v~~~v~yr 77 (285)
++++++|++++.+++.+||++.++++ ||+||++|| +... ...++.+.++++. +. .++|+|+..|.||++++||
T Consensus 18 ~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~-~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~r 96 (291)
T COG0330 18 FSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEV-VVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYR 96 (291)
T ss_pred HceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeee-eeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEE
Confidence 57899999999999999999999999 999999999 4333 3567888899999 54 8999999999999999999
Q ss_pred EccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHH-HHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHH
Q 023219 78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 78 I~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~-~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
|.|+ .++++++.+++..+.+.+++.||+++|++++++++++|. .+...+.+.|++.+++|||.|.+|.|+++.||++
T Consensus 97 v~d~--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~e 174 (291)
T COG0330 97 VTDP--QKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEE 174 (291)
T ss_pred EcCH--HHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHH
Confidence 9995 588999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHH
Q 023219 157 VKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDM 236 (285)
Q Consensus 157 v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~ 236 (285)
+..+|.+++.|++++++.+.+||+++++.+.+|+|++++..+.++|.+++ +..++|++++.+.+.+++.+ ....++
T Consensus 175 v~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~ 250 (291)
T COG0330 175 VQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQ 250 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhH
Confidence 99999999999999999999999999999999999999999999999988 55555555577888887663 233468
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCCCc
Q 023219 237 VLVTQYFDTMKEIGASSKTNSVFIPHGPGA 266 (285)
Q Consensus 237 ~l~~~~le~l~~~~~~~~~~~i~lp~~~~~ 266 (285)
+.+++|++.+.+...+++++++++|.+.++
T Consensus 251 ~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 251 ALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 899999999999988778889999987655
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=6e-40 Score=280.20 Aligned_cols=213 Identities=28% Similarity=0.375 Sum_probs=179.6
Q ss_pred ecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhc
Q 023219 10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY 88 (285)
Q Consensus 10 V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~ 88 (285)
|++||+||+++||++.++++||+||++||+ +++.+.++++.+.++++. .+.|+|++++.+++.+.|||.|| .++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDP--VKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecH--HHHHh
Confidence 789999999999999999999999999996 454358999999999976 79999999999999999999885 56788
Q ss_pred cccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 023219 89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 168 (285)
Q Consensus 89 ~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~ 168 (285)
.+.|++..|.+.+++++|++++++++++++++|+.+++.+++.|++.+.+|||.|++|.|++++||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 023219 169 RLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKE 248 (285)
Q Consensus 169 ~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~ 248 (285)
+++++.+.+|++++++.++.|+|++++.. ....+.++++|+++.
T Consensus 158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~~------------------------------------~~~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEGERQAAILLAEAAKQAAI------------------------------------NPAALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHcc------------------------------------CHHHHHHHHHHHHHH
Confidence 87666554444444443333333332111 135667889999999
Q ss_pred HhcCCCCcEEEEc
Q 023219 249 IGASSKTNSVFIP 261 (285)
Q Consensus 249 ~~~~~~~~~i~lp 261 (285)
++++++.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9987765555554
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=3.9e-37 Score=269.38 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=172.2
Q ss_pred cceEEEecCCeEEEEeecCeee-eeeCCcceeecCccceeeEEeeeeeEEEeecC-CCcccCCCcEEEEEE-EEEEEEcc
Q 023219 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVA-SVQYRALA 80 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~-~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~-~~v~T~D~~~v~v~~-~v~yrI~~ 80 (285)
++|+++|++||+||+++||++. .+++||+||++||+ +++ ..++++.++++.+ ..+.|+||+.|.+|. .+.|++++
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V-~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTY-KSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CceEEEECCCeEEEEEECCcccccccCCceEEecCCc-eEE-EEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 5799999999999999999985 58899999999996 666 4688888888875 488999999999995 46666665
Q ss_pred chhhhhh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCCH
Q 023219 81 EKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDE 155 (285)
Q Consensus 81 ~~~~~~~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 155 (285)
..++..+ |...+....|.+.+++++|+++|+++++++++ +|+++...+++.+++.+++| ||.|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 4444544 45566778899999999999999999999998 69999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 023219 156 HVKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKYLAGL 201 (285)
Q Consensus 156 ~v~~a~~~~~~A~~~~~--------a~~~~Ae~~~~~~~~~Aeaeaea~~~~Ae 201 (285)
++.++| ++|.|||++. +.+.+||+++...++.|+++|+..++.=+
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~ 212 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFG 212 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 999998 7999999999 99999999999999999999988776543
No 12
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.8e-37 Score=261.26 Aligned_cols=190 Identities=17% Similarity=0.235 Sum_probs=159.4
Q ss_pred eEEEecCCeEEEEeecCeeee--eeCCcceeecCccceeeEEeeeeeEEEeecCCCcccCCCcEEEEEEEEEEEEccchh
Q 023219 6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA 83 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~--~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
||++|++|++||+++||+... +++||+||++||+ +++ +.+|++.+.+++...+.|+|++.|++++.++|++.++++
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEcccc-cee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 689999999999999998654 8999999999996 565 589999999998888999999999999999999986544
Q ss_pred hhhhccc-cC-hHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHH
Q 023219 84 SDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 84 ~~~~~~~-~~-~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~ 161 (285)
...+..+ .+ .+..|.+.+++++|+++|+|++++++++|++|++.+.+.+++.+.+|||.|++|.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 4333222 23 345799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 023219 162 NEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 162 ~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~ 205 (285)
++++.|+++.+.+ +..+.+|+++|++.+++|+|+|+
T Consensus 159 ~~k~~a~q~~~~a--------~~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 159 EAKQVAQQEAERA--------KFVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999998875542 12234466666666666555554
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=8e-36 Score=253.97 Aligned_cols=170 Identities=15% Similarity=0.292 Sum_probs=157.8
Q ss_pred eEEEecCCeEEEEeecCeeeeee-CCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchh
Q 023219 6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~~-~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
|+|+|+|||+||+++||++.++. +||+||++||+ +. ..+|+|.++++.+. .+.|+|+.++.+++.++|||.| +
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence 68999999999999999999865 99999999997 44 47999999999887 7999999999999999999999 4
Q ss_pred hhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh-------hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHH
Q 023219 84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~-------~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
.+++|++.|+...|...+++++|+++|+++++++++ +|+++.+.+++.+++.++.|||+|.++.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 688999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023219 157 VKRAMNEINAAARLRLAANEKAEA 180 (285)
Q Consensus 157 v~~a~~~~~~A~~~~~a~~~~Ae~ 180 (285)
+.++|.+++.|++...|+...++|
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988877666665
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=2.5e-35 Score=249.09 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=184.7
Q ss_pred CcceEEEecCCeEEEEeecCeeee--eeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEc
Q 023219 3 QALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL 79 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~--~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~ 79 (285)
.|+|+++|++.|++|++|+|+... ..|||+.|++||| ++. .++|+|.+.+|+|. +++|+|.+.+.||+.++|||.
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~ 128 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS 128 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-cee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence 467899999999999999999874 7899999999997 565 68999999999998 999999999999999999999
Q ss_pred cchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHH
Q 023219 80 AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKR 159 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ 159 (285)
|| ...+.+++|.....+-++++.||+++|+.++.|++++|+.|+.+++..|++....|||+|++|+|+||++|.+.++
T Consensus 129 dp--i~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr 206 (288)
T KOG2621|consen 129 DP--IIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR 206 (288)
T ss_pred CH--HHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence 94 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023219 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 239 (285)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (285)
+|....+|.|+..+.+..||+++.+ . . +.+++ ++.+. .+ +..++
T Consensus 207 amaaeAeA~reA~Akviaaege~~a-----------s-----------~----al~~a----a~v~~--~s----p~alq 250 (288)
T KOG2621|consen 207 AMAAEAEATREARAKVIAAEGEKKA-----------S-----------E----ALKEA----ADVIS--ES----PIALQ 250 (288)
T ss_pred hhhchhhhhhhhhhhHHHHHhhhHH-----------H-----------H----HHHHh----hcccc--CC----chhhh
Confidence 9987666665555444444433321 1 1 11111 11111 12 35677
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCC
Q 023219 240 TQYFDTMKEIGASSKTNSVFIPHGP 264 (285)
Q Consensus 240 ~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
+|||++|.+++. .++++++.|.+.
T Consensus 251 LryLqtl~sia~-e~~~tivfP~p~ 274 (288)
T KOG2621|consen 251 LRYLQTLNSIAA-EKNSTIVFPLPI 274 (288)
T ss_pred hhhhhcchhhhc-CCCCCcccCCCH
Confidence 899999999976 578899999764
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.98 E-value=7.6e-31 Score=213.37 Aligned_cols=156 Identities=30% Similarity=0.427 Sum_probs=144.4
Q ss_pred ceEEEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchh
Q 023219 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA 83 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
+||++|++||+||+++||++.++++||+||++||+ +++ ..++++.+.++.+. .+.|+|++++.+++.+.|||.||
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~-- 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDP-- 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecce-eEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccH--
Confidence 48999999999999999999999999999999996 565 58999999998876 88999999999999999999996
Q ss_pred hhhhccccChH-HHHHHHHHHHHHHHcCCCCHHHHHh-hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHH
Q 023219 84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~vi~~~~~~~l~~-~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~ 161 (285)
.++++...+++ ..|.+.+++++|+++++++++++++ +|+++++.+++.+++.+++||++|.++.|+++.+|+++.++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 45677777777 5899999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHH
Q 023219 162 NEI 164 (285)
Q Consensus 162 ~~~ 164 (285)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 875
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=3.7e-31 Score=219.04 Aligned_cols=170 Identities=30% Similarity=0.447 Sum_probs=116.2
Q ss_pred EEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCC---CcccCCCcEEEEEEEEEEEEccchhh
Q 023219 8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS 84 (285)
Q Consensus 8 ~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~~~~~~ 84 (285)
|+|++||+||+++||++..+++||+||++||+ +.+ +.++++.+++++.. .+.|+|+.++.+++.+.|||.++ .
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~--~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDP--P 76 (179)
T ss_dssp -------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-C--C
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechH--H
Confidence 58999999999999999999999999999985 565 58999999999987 99999999999999999999663 4
Q ss_pred hhhccc----cChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHH
Q 023219 85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.++.++ .+++..|++.+++++|++++++++++++++|.++.+.+++.|++.+.+|||+|.+|.|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 455555 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH
Q 023219 161 MNEINAAARLR-LAANEKAEAE 181 (285)
Q Consensus 161 ~~~~~~A~~~~-~a~~~~Ae~~ 181 (285)
|.++..|++++ ++++.+||+|
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999998887 5555555544
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-26 Score=187.73 Aligned_cols=235 Identities=18% Similarity=0.270 Sum_probs=183.8
Q ss_pred CCcceEEEecCCeEEEEe-ecCeee-eeeCCcceeecCccceeeEEeeeeeEEEeecCCCcccCCCcEEEEEEEEEEEEc
Q 023219 2 GQALGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAL 79 (285)
Q Consensus 2 ~~~~~~~~V~~ge~~Vv~-~~Gk~~-~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~ 79 (285)
|.-.|+|.|+-||++|++ |+|.++ +++..|.||.+||++ +- ..+|+|-+...+....-|+|-+.|++...|.-|-.
T Consensus 33 ~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe-~p-IiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~ 110 (290)
T KOG3090|consen 33 GVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFE-RP-IIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPM 110 (290)
T ss_pred eecceeEeecCCceEEEEeccccchhccccCCceEeeeccc-cc-eeeeeccCcccccCCCCCcceeEEEeeeEEecCCC
Confidence 345789999999999987 688876 688999999999975 43 36788888888888899999999999999888776
Q ss_pred cchhhhhhcc-ccChHH-HHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHH
Q 023219 80 AEKASDAFYK-LSNTRS-QIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHV 157 (285)
Q Consensus 80 ~~~~~~~~~~-~~~~~~-~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v 157 (285)
.......+.. -.||++ .|.+++...|++++++|+..++++.|+.++..+++.|.++..++.|.+++|.|+++.+.+++
T Consensus 111 ~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~ef 190 (290)
T KOG3090|consen 111 ADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEF 190 (290)
T ss_pred hhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHH
Confidence 5433333322 357765 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023219 158 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 237 (285)
Q Consensus 158 ~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 237 (285)
..+++.++.|.|+.+.+. -.+.+|+.|.+.++++|++||++-...++|.+. + +.+
T Consensus 191 TaAiEaKQvA~QeAqRA~--------F~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n----~~f 245 (290)
T KOG3090|consen 191 TAAIEAKQVAAQEAQRAK--------FIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------N----PAF 245 (290)
T ss_pred HHHHHHHHHHHHHHhhhh--------hhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------C----ccc
Confidence 999999999998876542 123344445555555555555544445555443 1 246
Q ss_pred HHHHHHHHHHHHhc--CCCCcEEEEcCC
Q 023219 238 LVTQYFDTMKEIGA--SSKTNSVFIPHG 263 (285)
Q Consensus 238 l~~~~le~l~~~~~--~~~~~~i~lp~~ 263 (285)
+.+|.+++-.+++. +.+.+.++++++
T Consensus 246 i~Lrki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090|consen 246 ITLRKIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred eeehhHHHHHHHHHHHhcCCCeEEeccc
Confidence 66778888777764 356788999986
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.2e-25 Score=180.76 Aligned_cols=233 Identities=19% Similarity=0.274 Sum_probs=181.7
Q ss_pred ceEEEecCCeEEEEe-ecCeee-eeeCCcceeecCccceeeEEeeeeeEEEeecCCCcccCCCcEEEEEEEEEEEEccch
Q 023219 5 LGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK 82 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~-~~Gk~~-~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~ 82 (285)
+++|.|+-|+++|++ ||-.+. .+.+.|-||.+||.+ +. ..++.+.+..+++...-|||-+.|++...+.||-....
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~q-k~-~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq 102 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQ-KP-IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ 102 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeeecc-Cc-EEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence 578999999999987 575555 588999999999974 43 47888888888888889999999999999999876654
Q ss_pred hhhhhccc-cChHHH-HHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHH
Q 023219 83 ASDAFYKL-SNTRSQ-IQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 83 ~~~~~~~~-~~~~~~-l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.+..|.+. .||++. |..+....|++++++++..++++.|+.+++.++..|.++...+|+.+++|.|+.+++..++.++
T Consensus 103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A 182 (271)
T KOG3083|consen 103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA 182 (271)
T ss_pred cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence 44444333 477664 5667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023219 161 MNEINAAARLRLAA---NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 237 (285)
Q Consensus 161 ~~~~~~A~~~~~a~---~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 237 (285)
++.++.|+|+.+.+ ..+||.+|++.++.||||++++.+ .+++.+.+ .+.+
T Consensus 183 vE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~l-----------i~~sla~a----------------G~gL 235 (271)
T KOG3083|consen 183 VEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAEL-----------IANSLATA----------------GDGL 235 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHH-----------HHHHHhhc----------------CCce
Confidence 99999999987654 345566666555555555555544 33333321 1244
Q ss_pred HHHHHHHHHHHHhc--CCCCcEEEEcCCCCc
Q 023219 238 LVTQYFDTMKEIGA--SSKTNSVFIPHGPGA 266 (285)
Q Consensus 238 l~~~~le~l~~~~~--~~~~~~i~lp~~~~~ 266 (285)
+..+.+|+-++++. +.+.++.++|.+.+.
T Consensus 236 ielrrlEAa~dia~~Ls~s~nv~YLp~g~s~ 266 (271)
T KOG3083|consen 236 IELRRLEAAEDIAYQLSRSRNVTYLPAGQSM 266 (271)
T ss_pred eeehhhhhHHHHHHHHhcCCCceeccCCcce
Confidence 55667777776653 356889999976433
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=1.1e-22 Score=172.47 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=131.4
Q ss_pred cceEEEecCCeEEEEeecCeeeeeeCCcceeec----Cccc--------------eeeEEeeeeeEEEeecC-------C
Q 023219 4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLP----WCLG--------------SQVAGQLSLRVQQLDVR-------C 58 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~----P~i~--------------~~v~~~v~~~~~~~~~~-------~ 58 (285)
++|.++|++||++|++++|++.++++||.|+.+ |++. ..+ +.++++....... .
T Consensus 13 ~~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~ 91 (207)
T cd03408 13 NGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFG 91 (207)
T ss_pred cCCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeee
Confidence 458999999999999999999999999888665 3321 112 4567776655321 2
Q ss_pred CcccCCCcEEEEEEEEEEEEccchhhhhhccc---------cChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHH
Q 023219 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKA 127 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~---------~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~ 127 (285)
...|+|+++|.+++.+.|||.|| .+++.++ .+....|.+.+++++|++++++++++++.+ |+++++.
T Consensus 92 ~~~~~~~v~v~v~~~~~~kI~Dp--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~ 169 (207)
T cd03408 92 RDSEFGGVPLRAFGTYSLKVTDP--VLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA 169 (207)
T ss_pred eCCccceEEEEeeEEEEEEEcCH--HHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence 45788999999999999999995 4555443 245678999999999999999999999987 9999999
Q ss_pred HHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHH
Q 023219 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 128 i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~ 164 (285)
+++.+++.+++||++|.+|.|++|.+|++++++|.++
T Consensus 170 v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 170 VREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 9999999999999999999999999999999998864
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=149.19 Aligned_cols=193 Identities=14% Similarity=0.177 Sum_probs=149.8
Q ss_pred cceEEEecCCeEEEEeecCeee-eeeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEE-EEEEEcc
Q 023219 4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVAS-VQYRALA 80 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~-~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~~ 80 (285)
+++++.|++||+||.+|-|... .+.+||+|..+||+ .++ ..+.+..|+-+... .|-|+.|+.+..|-. +.-+..+
T Consensus 20 ~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~-ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~ 97 (322)
T KOG2962|consen 20 SSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTY-KSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP 97 (322)
T ss_pred HHHHhhcccCceEEEEecceeeeccCCCCcEEEeeee-ece-eeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence 4567899999999999999865 57899999999997 454 45666666666665 899999999877743 1112222
Q ss_pred chhhhhhccc-cChHH-HHHHHHHHHHHHHcCCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCCH
Q 023219 81 EKASDAFYKL-SNTRS-QIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDE 155 (285)
Q Consensus 81 ~~~~~~~~~~-~~~~~-~l~~~~~~~lr~vi~~~~~~~l~~~-R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 155 (285)
+.+++.+.+. .|++. +|-+-+.-.+...|+..++.+++-+ .++|.+.++..|+.++.++ |+.|..|.++....|+
T Consensus 98 d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPE 177 (322)
T KOG2962|consen 98 DAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPE 177 (322)
T ss_pred hHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChH
Confidence 2233333332 25554 6888899999999999999999876 8999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023219 156 HVKRAMNEINAAAR--------LRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 156 ~v~~a~~~~~~A~~--------~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
.+...++. |++++ .+.....+||.++...++.||..|+.+++.
T Consensus 178 aiRrN~E~-ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~ 228 (322)
T KOG2962|consen 178 AIRRNFEL-MEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKIL 228 (322)
T ss_pred HHHHhHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99998874 44443 344556788999888888888877665543
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.86 E-value=2.4e-19 Score=155.74 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=124.5
Q ss_pred EEEecCCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhh
Q 023219 7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD 85 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~ 85 (285)
|++-.+++..++..+|.-...+-+| .|.||| + .+ .++|+...++++.. .+.|+.|+|+.|.+..+.+|.-+++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w-q-~~-q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW-Q-QC-TVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee-e-ee-eEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4566788888899888766555555 566688 4 44 58999999999988 599999999999999888776543221
Q ss_pred -------hhcc--ccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCH-
Q 023219 86 -------AFYK--LSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE- 155 (285)
Q Consensus 86 -------~~~~--~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 155 (285)
.+.+ ..+..+.+...+++..|.++++||+++++.+|++|...+++....++.++||.|.+..|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 1111 123345667778899999999999999999999999999999999999999999999999999877
Q ss_pred -HHHHHHHHHHHH
Q 023219 156 -HVKRAMNEINAA 167 (285)
Q Consensus 156 -~v~~a~~~~~~A 167 (285)
+|..++.+..+|
T Consensus 158 ~~YlssLGka~ta 170 (428)
T KOG2668|consen 158 HEYLSSLGKATTA 170 (428)
T ss_pred hHHHHHhhhHHHH
Confidence 688887754433
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.82 E-value=1.6e-19 Score=140.98 Aligned_cols=118 Identities=21% Similarity=0.371 Sum_probs=104.3
Q ss_pred eeeeEEEeecCCCcccCCCcEEEEEEEEEEEEccchhhhhhccc-cC-hHHHHHHHHHHHHHHHcCCCCHHHHHh-hHHH
Q 023219 47 LSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL-SN-TRSQIQAYVFDVIRASVPKLDLDATFE-QKND 123 (285)
Q Consensus 47 v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~-~~-~~~~l~~~~~~~lr~vi~~~~~~~l~~-~R~~ 123 (285)
++++.++.+.+..+.|+||..+.++++++|||.++++...+..+ .+ .+..|.+.+++++|+++|+++++++++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 57788888888899999999999999999999887654433332 22 345799999999999999999999997 7999
Q ss_pred HHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHH
Q 023219 124 IAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 124 i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~ 164 (285)
|.+.+.+.+++.+.+|||.|.+|.|+++.||+++.++++++
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.77 E-value=2.8e-18 Score=134.66 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=101.2
Q ss_pred eeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchh--hhhhc---c--ccChHHHHHHHHHHHHHHHcCCCCHHHHH
Q 023219 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA--SDAFY---K--LSNTRSQIQAYVFDVIRASVPKLDLDATF 118 (285)
Q Consensus 47 v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~--~~~~~---~--~~~~~~~l~~~~~~~lr~vi~~~~~~~l~ 118 (285)
++++.+.++++. .++|+|++++.++++++|||.||.. ...+. + ..+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 577888999986 8999999999999999999999641 11111 1 13456788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHH
Q 023219 119 EQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMN 162 (285)
Q Consensus 119 ~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~ 162 (285)
++|++|.+.+.+.++..+++|||+|.++.|++|.+|+.+.+++.
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999887764
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=1.7e-16 Score=147.93 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=150.9
Q ss_pred eEEE-ecCCeEEEEee--c------CeeeeeeCCcceeecCccceeeEEeeeeeEEEeecC-CCcccCCCcEEEEEEEEE
Q 023219 6 GCIQ-VDQSTVAIKET--F------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQ 75 (285)
Q Consensus 6 ~~~~-V~~ge~~Vv~~--~------Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~-~~v~T~D~~~v~v~~~v~ 75 (285)
.+|+ .++++..|++. | |.-.+++.+|+||.+|++ +.. .++++....+++. ..+.|+||.++++++..+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTI-ERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eee-EEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 4565 55555555543 2 444578999999999996 454 5789998888888 489999999999999999
Q ss_pred EEEccch--hhhhh--cccc----ChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEE
Q 023219 76 YRALAEK--ASDAF--YKLS----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTL 147 (285)
Q Consensus 76 yrI~~~~--~~~~~--~~~~----~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~ 147 (285)
.+|.|+- ...+. +... +....+...+.+.||.+++++|+.++..+|..|.+.+.+.+...|++.|+.|+++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 9999852 11222 2222 34556788889999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023219 148 IVDIEPD-------EHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 148 I~~i~~p-------~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
|.|+..+ ..|.++...+..++-.+.+.+.++|.+++..+..++++.++.+.+
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e 249 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVE 249 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHh
Confidence 9999998 899999998888877777777777776666666665555444433
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.67 E-value=1.9e-15 Score=116.31 Aligned_cols=111 Identities=37% Similarity=0.575 Sum_probs=97.9
Q ss_pred EEeecC-CCcccCCCcEEEEEEEEEEEEccchhhhhhccccCh--HHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHH
Q 023219 52 QQLDVR-CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAV 128 (285)
Q Consensus 52 ~~~~~~-~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~--~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i 128 (285)
.+.+.+ ..+.|+|+.++.+++++.|+|.|+. .+++...+. ...|.+.+.+++|++++.++++++.++|+++.+.+
T Consensus 7 ~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v 84 (121)
T cd02106 7 QTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV 84 (121)
T ss_pred EEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence 334444 3899999999999999999999975 345544444 37899999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHH
Q 023219 129 EEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 129 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~ 164 (285)
++.+...+++||++|.+|.|.++.+|+++.++++++
T Consensus 85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 85 REALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999999999999999999999999998875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.49 E-value=3e-12 Score=108.41 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=119.8
Q ss_pred ceEEEecCCeEEEEeecCeeeeeeCCcceee-------------------cCccceeeEEeeeeeEEE-eec--CCCccc
Q 023219 5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCL-------------------PWCLGSQVAGQLSLRVQQ-LDV--RCETKT 62 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~-------------------~P~i~~~v~~~v~~~~~~-~~~--~~~v~T 62 (285)
.|-.+|++|+++|..+-|++..+.+||.|-+ .|| ... ++.++++... ..+ +..+.-
T Consensus 14 GS~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf-~~e-VyFvn~~~~~~~kwGT~~pi~~ 91 (211)
T PF13421_consen 14 GSQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPF-KAE-VYFVNTKEITNIKWGTPNPIPY 91 (211)
T ss_pred CCEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCc-eEE-EEEEECeEecCCccCCCCCeee
Confidence 4778999999999999999988999999944 345 233 3677777542 222 222222
Q ss_pred CC----CcEEEEEEEEEEEEccchhhhhh---------ccccChHHHHHHHHHHHHHHHcC--CCCHHHHHhhHHHHHHH
Q 023219 63 KD----NVFVNVVASVQYRALAEKASDAF---------YKLSNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKA 127 (285)
Q Consensus 63 ~D----~~~v~v~~~v~yrI~~~~~~~~~---------~~~~~~~~~l~~~~~~~lr~vi~--~~~~~~l~~~R~~i~~~ 127 (285)
.| .+++..-++..|||.||. .++ +...+..+++++.+.+.+.+.++ ++++.++-.+-.+|++.
T Consensus 92 ~D~~~~~v~lra~G~ys~rI~Dp~--~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~ 169 (211)
T PF13421_consen 92 RDPEYGPVRLRAFGTYSFRIVDPV--LFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEA 169 (211)
T ss_pred cCCCCCcEEEEEEEEEEEEEeCHH--HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 22 357788888889999963 333 22234456777777777777776 57899999999999999
Q ss_pred HHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 023219 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (285)
Q Consensus 128 i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~ 165 (285)
+++.|++.++.+|++|.++.|.+|.+|+++++.+++..
T Consensus 170 ~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 170 LKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.05 E-value=9e-09 Score=88.14 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=119.3
Q ss_pred ceEEEecCCeEEEEeecCeeeeeeC-Ccce-------------------eecCccceeeEEeeeeeEEE-eec--CCCcc
Q 023219 5 LGCIQVDQSTVAIKETFGKFDDVLE-PGCH-------------------CLPWCLGSQVAGQLSLRVQQ-LDV--RCETK 61 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~~~-pG~h-------------------~~~P~i~~~v~~~v~~~~~~-~~~--~~~v~ 61 (285)
.|..+|.|++-++...-|++..+.. +|.+ |..|+ .+.| +.++++++. +.+ +..+.
T Consensus 39 Gs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~-k~eV-yfvntqe~~girwGT~qpin 116 (345)
T COG4260 39 GSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPF-KQEV-YFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred CcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcc-cceE-EEEecceecceecCCCCCee
Confidence 3788999999999999999887664 7765 12445 3333 778888766 433 33333
Q ss_pred cCC-----CcEEEEEEEEEEEEccchhh-------hhhccccChHHHHHHHHHHHHHHHcCCCC--HHHHHhhHHHHHHH
Q 023219 62 TKD-----NVFVNVVASVQYRALAEKAS-------DAFYKLSNTRSQIQAYVFDVIRASVPKLD--LDATFEQKNDIAKA 127 (285)
Q Consensus 62 T~D-----~~~v~v~~~v~yrI~~~~~~-------~~~~~~~~~~~~l~~~~~~~lr~vi~~~~--~~~l~~~R~~i~~~ 127 (285)
-.| ++++....+..|+|.||..+ +-.|.+++.++++-+.+..+|...|+++- +..+-++--+|++.
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~ 196 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY 196 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence 333 57888899999999997532 12344566667777777777777776653 44555678899999
Q ss_pred HHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHH
Q 023219 128 VEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (285)
Q Consensus 128 i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~ 165 (285)
+.+.|.+.+..+|..|++|.|.+|++|++.+..|+.++
T Consensus 197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 99999999999999999999999999999999999754
No 28
>PTZ00491 major vault protein; Provisional
Probab=99.01 E-value=8.5e-08 Score=93.87 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=106.1
Q ss_pred EEEecCCeEEEEee--cCeeeeeeCCcceeecCccceeeEEeeeee------EEEe-----ecC-------CCcccCCCc
Q 023219 7 CIQVDQSTVAIKET--FGKFDDVLEPGCHCLPWCLGSQVAGQLSLR------VQQL-----DVR-------CETKTKDNV 66 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~--~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~------~~~~-----~~~-------~~v~T~D~~ 66 (285)
.|.||.+.+.=|+- -++-.-++||-+.+.=|- ++ . ..+++. ...+ .+. ..+-|+|..
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~-f-tvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhA 540 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EE-F-TVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHA 540 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC-Cc-e-EEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccc
Confidence 35677777665654 355445789998888776 32 2 233331 1111 111 157999999
Q ss_pred EEEEEEEEEEEEc----cchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHH-HHHHHHHHHHHH-------
Q 023219 67 FVNVVASVQYRAL----AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEK------- 134 (285)
Q Consensus 67 ~v~v~~~v~yrI~----~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~-~i~~~i~~~l~~------- 134 (285)
.+.+..++.|+.. |+.....+|++.|+-.-+-..+.+-+|..+++.+++++..+-. -|.+.+.....+
T Consensus 541 rL~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~ 620 (850)
T PTZ00491 541 RLALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDS 620 (850)
T ss_pred eEEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccc
Confidence 9999999999876 3333367899999999999999999999999999999988633 344444442222
Q ss_pred -HhhccCeEEEEEEEeecCC-CHHHHHHHH
Q 023219 135 -AMSHYGYEIVQTLIVDIEP-DEHVKRAMN 162 (285)
Q Consensus 135 -~l~~~Gi~v~~v~I~~i~~-p~~v~~a~~ 162 (285)
.+...|+.|.+|.|+++.| ++...+++.
T Consensus 621 l~F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 621 LRFPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred eEEccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 2355699999999999998 555555555
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.27 E-value=0.0012 Score=57.07 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023219 178 AEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~ 223 (285)
|+.++.+...+|+|++++.++.|++++++.++.|+|++++....++
T Consensus 164 ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ 209 (242)
T cd03405 164 AERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGE 209 (242)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455556777777777777777777777777777776555543
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=96.94 E-value=0.031 Score=48.45 Aligned_cols=108 Identities=20% Similarity=0.243 Sum_probs=79.6
Q ss_pred eeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHH
Q 023219 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125 (285)
Q Consensus 47 v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~ 125 (285)
.++....++.|. ....+||..+.+.+.+..|-+= ..+.+-...+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaNi----~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~IS 195 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRANI----DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSIS 195 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEecH----HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHH
Confidence 344555667675 7788999999999988888763 23444445556667777777777778888899999999999
Q ss_pred HHHHHHHHHHhhc-cCeEEEEEEEeecCCCHHHHHHH
Q 023219 126 KAVEEELEKAMSH-YGYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 126 ~~i~~~l~~~l~~-~Gi~v~~v~I~~i~~p~~v~~a~ 161 (285)
+.+.+. -|+. --++|.++.|-|++.-+++=..+
T Consensus 196 k~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~L 229 (316)
T PF12127_consen 196 KTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKL 229 (316)
T ss_pred HHHHhh---CCCcCceeEEEEeeeeccccchhhchhh
Confidence 888753 3443 36999999999999987655443
No 31
>PRK13665 hypothetical protein; Provisional
Probab=96.90 E-value=0.011 Score=51.05 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=73.0
Q ss_pred eeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHH
Q 023219 47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125 (285)
Q Consensus 47 v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~ 125 (285)
.++....++.|. ....+||..+.+.+.+..|-+= .+ +.+-..-+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaNi---~r-LVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~IS 200 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRANI---DR-LVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSIS 200 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEeehhH---HH-HhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHH
Confidence 444556677776 7788999999998888777542 22 222222233333444455666667778889999999998
Q ss_pred HHHHHHHHHHhhcc-CeEEEEEEEeecCCCHHHHHHH
Q 023219 126 KAVEEELEKAMSHY-GYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 126 ~~i~~~l~~~l~~~-Gi~v~~v~I~~i~~p~~v~~a~ 161 (285)
+.+. .+-|+.- -++|.++.|-|++.-+++=..+
T Consensus 201 k~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA~L 234 (316)
T PRK13665 201 KTVL---SKGLDAGTAFEILSIDIADVDVGKNIGAKL 234 (316)
T ss_pred HHHH---hccCCcCceeEEEEEeeeccccchhhchhh
Confidence 7665 4445543 6999999999999988665443
No 32
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.69 E-value=0.018 Score=50.59 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=53.0
Q ss_pred EEEEeecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023219 145 QTLIVDIEPD-EHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (285)
Q Consensus 145 ~v~I~~i~~p-~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~ 223 (285)
.+.|.++.+- -..-..+.+.+.+ ...|+.++++.+.+|++++++.+.+|+++|++.++.|+|++++....++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 5778887764 2344444443333 3345556677778899999999999999999999999999988776665
Q ss_pred c
Q 023219 224 N 224 (285)
Q Consensus 224 a 224 (285)
+
T Consensus 234 ~ 234 (266)
T cd03404 234 G 234 (266)
T ss_pred H
Confidence 4
No 33
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.58 E-value=0.011 Score=53.42 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023219 178 AEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAF 221 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~ 221 (285)
||.++.+...+++|++++.++.|+|++++.++.|+|++++....
T Consensus 219 aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~ 262 (317)
T TIGR01932 219 SEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIK 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556677777777777777777766666665554333
No 34
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.55 E-value=0.014 Score=52.99 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=50.4
Q ss_pred EEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023219 145 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 223 (285)
Q Consensus 145 ~v~I~~i~~p~-~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~ 223 (285)
.+.|.++.+.+ .+=..+.+.+. ...+||.++.+...+|+|++++.+++++|+.++.++.|+|++++....++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae 274 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE 274 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 36677776643 33333333332 22356677777788999999999999999999999888888877655544
No 35
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.54 E-value=0.01 Score=52.14 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023219 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENV 225 (285)
Q Consensus 175 ~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~ 225 (285)
...|+.++++.+.+|++++.+.+.+|+|+|++.+++|+|.+++...++++.
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~ 202 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL 202 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345666777777788888888888888888888888888888877777653
No 36
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.48 E-value=0.018 Score=50.46 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHH---hhccCeEEEEEEEeecCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023219 124 IAKAVEEELEKA---MSHYGYEIVQTLIVDIEPDEHVKRAMNEI-------NAAARLRLAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 124 i~~~i~~~l~~~---l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~-------~~A~~~~~a~~~~Ae~~~~~~~~~Aeaea 193 (285)
+.+.+.+.+... +.=-.+.|.++.+-+ ..-+.+.+.+... .+|+.+++..+.+|++++++.+..|+|.+
T Consensus 120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 344467777877653 2333333333332 23344455556778888888889999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 023219 194 ESKYLAGLGIARQRQAIVDGLRD 216 (285)
Q Consensus 194 ea~~~~Aea~a~a~~~~a~a~a~ 216 (285)
++.+++|+|+|++..+.+++-..
T Consensus 199 ~~~~~~a~g~a~~~~~~~~ay~~ 221 (261)
T TIGR01933 199 ERRINRAKGDVARFTKLLAEYKK 221 (261)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999998877776543
No 37
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.31 E-value=0.029 Score=42.36 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=68.0
Q ss_pred CcccCCCcEEEEEEEEEEEEcc----chhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHH-HHHHHH---
Q 023219 59 ETKTKDNVFVNVVASVQYRALA----EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI-AKAVEE--- 130 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~----~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i-~~~i~~--- 130 (285)
.+-|+|...+.+..+..|...- +.....+|++.|+-.-.-..+.+-+|..+++.+.+++..+-..| .+.+.-
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 4679999999999999987643 11235689999999999999999999999999999998764333 222211
Q ss_pred --HHH--HHhhccCeEEEEEEEeecCC
Q 023219 131 --ELE--KAMSHYGYEIVQTLIVDIEP 153 (285)
Q Consensus 131 --~l~--~~l~~~Gi~v~~v~I~~i~~ 153 (285)
..+ -.+...|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 111 12345599999999999876
No 38
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=95.83 E-value=0.083 Score=49.49 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 023219 184 LQIKRAEGEAESKYLAGLGIARQRQAIVDGLRD 216 (285)
Q Consensus 184 ~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~ 216 (285)
+.+.+|++.+...+.+|+++|+..+..|+|.++
T Consensus 263 ~~i~eAeayan~iip~A~gea~~ii~~AeAyr~ 295 (419)
T PRK10930 263 QYIREAEAYTNEVQPRANGQAQRILEEARAYKA 295 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 39
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=95.56 E-value=0.033 Score=47.99 Aligned_cols=51 Identities=27% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 023219 165 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (285)
Q Consensus 165 ~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a 215 (285)
.++|-+++++|++|||+++..+...+|.+......|+|+|++.+..|++-+
T Consensus 178 lesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a 228 (301)
T KOG2620|consen 178 LESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVA 228 (301)
T ss_pred hhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhccc
Confidence 345556667777777777776666666666666666666666655555433
No 40
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.54 Score=45.17 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcC--------CCCcEEEE
Q 023219 189 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS--------SKTNSVFI 260 (285)
Q Consensus 189 Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~--------~~~~~i~l 260 (285)
+++++++...++.++|++.+..++|++++.+.+++++...+.... ..++...+++|..++++ ...+++.+
T Consensus 411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i 488 (548)
T COG2268 411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVI 488 (548)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 445777777777888888888999999999999988864333311 12333445666555432 24455566
Q ss_pred cCCC
Q 023219 261 PHGP 264 (285)
Q Consensus 261 p~~~ 264 (285)
|...
T Consensus 489 ~~~~ 492 (548)
T COG2268 489 GGAN 492 (548)
T ss_pred CCcc
Confidence 6543
No 41
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=94.24 E-value=0.59 Score=37.78 Aligned_cols=80 Identities=6% Similarity=0.046 Sum_probs=63.2
Q ss_pred CcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccCeE
Q 023219 65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYE 142 (285)
Q Consensus 65 ~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~Gi~ 142 (285)
+...-+.+.+.|++.|......+ . .=.+.+++.+...+++.|.+++-+ +++++.+++++.++..+..-+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el---~----~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEEL---E----EKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHH---H----HhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 66778889999999985322111 1 124567889999999999999977 599999999999999998866 8
Q ss_pred EEEEEEeecC
Q 023219 143 IVQTLIVDIE 152 (285)
Q Consensus 143 v~~v~I~~i~ 152 (285)
|.+|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8888888764
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.43 Score=42.43 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023219 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 224 (285)
Q Consensus 174 ~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a 224 (285)
....||.++.+.+.+|++++++.+++|+|++++..+.++|.+++ +..+++
T Consensus 181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 44557777777899999999999999999999999999999887 444444
No 43
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=90.23 E-value=2.2 Score=35.79 Aligned_cols=41 Identities=27% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 023219 166 AAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 206 (285)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a 206 (285)
.|+++.+.-+.+|+.++...+..|+.+++..+.+|+.+++.
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~ 59 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAND 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666677777777777777776666655544
No 44
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=88.58 E-value=1.4 Score=36.45 Aligned_cols=25 Identities=8% Similarity=-0.074 Sum_probs=19.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 023219 193 AESKYLAGLGIARQRQAIVDGLRDS 217 (285)
Q Consensus 193 aea~~~~Aea~a~a~~~~a~a~a~a 217 (285)
++..+.+|+++|++.+++|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3445777899999999999999875
No 45
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=88.56 E-value=10 Score=30.42 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 023219 236 MVLVTQYFDTMK 247 (285)
Q Consensus 236 ~~l~~~~le~l~ 247 (285)
..+..+|++..+
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 445566666554
No 46
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=88.25 E-value=2.1 Score=38.66 Aligned_cols=85 Identities=22% Similarity=0.164 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc---
Q 023219 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--- 251 (285)
Q Consensus 175 ~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~--- 251 (285)
...||+++...+..|++||+..+...+|||.+..+.|.++++..+.-+.++... .+ .......|++|..++.
T Consensus 295 ~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y--~~---aa~l~~lLealp~Ia~~ia 369 (428)
T KOG2668|consen 295 TKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAY--AQ---AAYLRTLLEALPMIAAEIA 369 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHh--hh---hHHHHHHHHHHHHHHHHhc
Confidence 345677777788888888888888888888888888888888777776665421 22 2333457888887764
Q ss_pred ---CCCCcEEEEcCCC
Q 023219 252 ---SSKTNSVFIPHGP 264 (285)
Q Consensus 252 ---~~~~~~i~lp~~~ 264 (285)
++-+++.++.++.
T Consensus 370 ~plaktnkI~v~s~g~ 385 (428)
T KOG2668|consen 370 APLAKTNKISVWSHGG 385 (428)
T ss_pred cchhhcCeEEEEecCC
Confidence 2445666777653
No 47
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=86.98 E-value=9.5 Score=31.94 Aligned_cols=40 Identities=25% Similarity=0.077 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 023219 176 EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (285)
Q Consensus 176 ~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a 215 (285)
.+|+.++...+..|+.+|+..+.+|+.+|+.....|+.++
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea 57 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEA 57 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544444443
No 48
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=86.69 E-value=5.3 Score=33.78 Aligned_cols=46 Identities=22% Similarity=0.034 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 023219 166 AAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIV 211 (285)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a 211 (285)
.|+.+.+..+.+|+.+++..+..|+.+++..+..|+.+++..+.++
T Consensus 24 eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~ 69 (207)
T PRK01005 24 PAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQG 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666666665555543333
No 49
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=86.13 E-value=19 Score=30.49 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q 023219 167 AARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG 202 (285)
Q Consensus 167 A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea 202 (285)
|+.+++..+.+|+.++...+..|+.+++..+.+++.
T Consensus 36 Ak~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 36 AKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555444444444433
No 50
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=85.87 E-value=5.4 Score=31.55 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q 023219 100 YVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (285)
Q Consensus 100 ~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
.+++.+-..+++.+.+++-+ +|+.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 56777788889999999976 5999999999999988876 4 6888888775
No 51
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=85.76 E-value=9.7 Score=31.41 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=57.5
Q ss_pred CcccCCC--cEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHh
Q 023219 59 ETKTKDN--VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAM 136 (285)
Q Consensus 59 ~v~T~D~--~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l 136 (285)
.+.++|. ....+.+++.|...++++..-+ +.=.+.++..+...+++.+.+|+- ++.+|.++++++++..+
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~EL-------~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILNEL-------GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHHHH-------HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 3444454 4445777777777764321111 112346677888889999999998 88999999999999888
Q ss_pred hccCeEEEEEEEeecC
Q 023219 137 SHYGYEIVQTLIVDIE 152 (285)
Q Consensus 137 ~~~Gi~v~~v~I~~i~ 152 (285)
.+- .|.+|.++++.
T Consensus 164 ~~G--kV~~VYFTeFv 177 (181)
T PRK06654 164 RNG--EIKDIAFTQID 177 (181)
T ss_pred CCC--ceEEEEEEEEE
Confidence 853 36777776653
No 52
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=85.75 E-value=6.7 Score=30.85 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEeec
Q 023219 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (285)
Q Consensus 99 ~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 151 (285)
+.+++.+-..+++.+.+++.+ +|+.+.+++.+.++..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 567788888999999999966 69999999999999999764 3 35888888775
No 53
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=85.15 E-value=12 Score=27.07 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q 023219 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
.+.++..+...++.++.+++-+ ++..+.+++.+.+++.+.+ -.|.+|.++++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 3467788888899999999975 5999999999999998854 33777777765
No 54
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=84.42 E-value=9.6 Score=28.93 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023219 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
-|..-+.|++++..-+..|+.++...+..|+.+|+.-+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788777777888877777777777777666543
No 55
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=83.43 E-value=2.8 Score=35.24 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 023219 187 KRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (285)
Q Consensus 187 ~~Aeaeaea~~~~Aea~a~a~~~~a~a~a 215 (285)
..|+.++++.+.+|+|++++.+++++|++
T Consensus 154 ~~A~~~~~a~i~~A~ge~~a~~~~aea~~ 182 (215)
T cd03403 154 AEAEREKRAKIIEAEGERQAAILLAEAAK 182 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555566666666666666666555554
No 56
>PLN03086 PRLI-interacting factor K; Provisional
Probab=83.39 E-value=4.6 Score=39.32 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcC
Q 023219 237 VLVTQYFDTMKEIGASSKTNSVFIPH 262 (285)
Q Consensus 237 ~l~~~~le~l~~~~~~~~~~~i~lp~ 262 (285)
+.+.+.|+++... +++..|+||.
T Consensus 76 ~~~~~~~~~~~~~---~~GdKI~LPp 98 (567)
T PLN03086 76 IVFSRIFEAVSFQ---GNGDKIKLPP 98 (567)
T ss_pred eEEEEEeeccccC---CCCCeEEcCH
Confidence 3344455655554 5788999996
No 57
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.07 E-value=18 Score=29.25 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccC--eEEEEEEEeec
Q 023219 99 AYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYG--YEIVQTLIVDI 151 (285)
Q Consensus 99 ~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~G--i~v~~v~I~~i 151 (285)
+.+++.+-..++..+.+++.+ +++.+.+++.+.++..+..-+ -.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 356777777889999999966 699999999999999887542 45888888765
No 58
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.06 E-value=11 Score=30.76 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecC
Q 023219 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 152 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~ 152 (285)
.+.+++.+-..+++.+.+++.+ ++..+.+++.+.++..+.+- .|.+|.++++-
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~FV 164 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEVV 164 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEeeE
Confidence 3456677778889999999976 59999999999999988763 38888887753
No 59
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.87 E-value=19 Score=29.72 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023219 165 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 165 ~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~ 198 (285)
+..+-+.++....++++++...+.+++++++..+
T Consensus 10 I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i 43 (188)
T PRK02292 10 IRDEARARASEIRAEADEEAEEIIAEAEADAEEI 43 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443444444443333
No 60
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.85 E-value=22 Score=30.26 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred ccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhc-c
Q 023219 61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSH-Y 139 (285)
Q Consensus 61 ~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~-~ 139 (285)
..-||..|...+.+..|-+ ..+ +.+-...+..|...-++.+..+-++-.-.+++.+-+.|++.+.+ +-|+. -
T Consensus 139 vam~gievkakaritvran---i~r-lvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gt 211 (328)
T COG4864 139 VAMNGIEVKAKARITVRAN---IER-LVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGT 211 (328)
T ss_pred eeccceEEEEEEEEEehhh---HHH-HhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCc
Confidence 3456666655555444432 222 22222333344444444455555556677888899988887764 23332 3
Q ss_pred CeEEEEEEEeecCCCHHHHHH
Q 023219 140 GYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 140 Gi~v~~v~I~~i~~p~~v~~a 160 (285)
-++|.++.|-|++....+-.-
T Consensus 212 afeilsidiadvdigkniga~ 232 (328)
T COG4864 212 AFEILSIDIADVDIGKNIGAK 232 (328)
T ss_pred eeEEEEeeeeccccccccccc
Confidence 589999999999988765443
No 61
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=80.86 E-value=21 Score=26.76 Aligned_cols=43 Identities=26% Similarity=0.125 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 023219 159 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL 201 (285)
Q Consensus 159 ~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Ae 201 (285)
+.+...-.|+......|.+|+-++.+.+..|+.++...+.+|+
T Consensus 7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE 49 (108)
T COG2811 7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAE 49 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666666666655555555554444443
No 62
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=80.02 E-value=14 Score=27.51 Aligned_cols=36 Identities=31% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 023219 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAES 195 (285)
Q Consensus 160 a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea 195 (285)
.+...-.|+.+.+..+..|+.++...+..|+.+++.
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k 39 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK 39 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566555555555555555555544444433
No 63
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=2.6 Score=35.76 Aligned_cols=23 Identities=4% Similarity=-0.059 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 023219 199 AGLGIARQRQAIVDGLRDSVLAF 221 (285)
Q Consensus 199 ~Aea~a~a~~~~a~a~a~a~~~~ 221 (285)
+|+-+..+..+.||+++++.+.+
T Consensus 202 KAeQqk~aavIsAEGds~aA~li 224 (271)
T KOG3083|consen 202 KAEQQKKAAVISAEGDSKAAELI 224 (271)
T ss_pred HHhhhhhhheeecccchHHHHHH
Confidence 33333444445555566554444
No 64
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.86 E-value=28 Score=28.28 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEeec
Q 023219 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 151 (285)
.+.+++.+-.++++.+.+++-+ +++.+.+++.++++..+... | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4567788888999999999976 59999999999988888765 3 25888888765
No 65
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=78.82 E-value=23 Score=26.87 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 023219 172 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAI 210 (285)
Q Consensus 172 ~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~ 210 (285)
-.....||.++...+..|+..+...+.+|+.+|+.-+..
T Consensus 8 IQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 8 IQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888877777777777777666554
No 66
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.49 E-value=19 Score=29.77 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHh--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q 023219 98 QAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~~l~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
.+.+++.+-..+++.+.+++.+ .|..|.+++.+.++..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 4567788888899999999976 5999999999999999976 3 5788888775
No 67
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=78.41 E-value=25 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.042 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHHhhHHH
Q 023219 183 ILQIKRAEGEAESKYLAGLGI 203 (285)
Q Consensus 183 ~~~~~~Aeaeaea~~~~Aea~ 203 (285)
...+..|+.+++..+..|+.+
T Consensus 42 ~eii~eA~~eA~~ile~Ak~e 62 (103)
T PRK08404 42 EEIIKKAEEEAQKLIEKKKKE 62 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 68
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=76.79 E-value=8.3 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 023219 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGI 203 (285)
Q Consensus 161 ~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~ 203 (285)
|.....|+.++...+.+|..++...+..|+.+|+..+.....+
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~ 48 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAE 48 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666555444333
No 69
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=75.65 E-value=26 Score=29.48 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 023219 58 CETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKA 135 (285)
Q Consensus 58 ~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~~l~~~ 135 (285)
.++.|+||..+.+-+.+.-+-. .-.+....|+......+...++.+++++++.. -+.|+.+|...++..
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 3679999998887776532211 11234567889999999999999999999975 566777777666655
Q ss_pred hhccCeEEEEEEE
Q 023219 136 MSHYGYEIVQTLI 148 (285)
Q Consensus 136 l~~~Gi~v~~v~I 148 (285)
.--.-++|..+.+
T Consensus 171 yPlr~veIrKvkv 183 (203)
T PRK04057 171 YPLRRVEIRKSKV 183 (203)
T ss_pred cCcceEEEEEEEE
Confidence 4434566666655
No 70
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=73.42 E-value=19 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 023219 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRD 216 (285)
Q Consensus 174 ~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~ 216 (285)
.+..||.++...+..|+.++...+..|+.+|+..+.....+.+
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e 50 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAE 50 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888877777766555444443
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.24 E-value=55 Score=27.54 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.4
Q ss_pred HHHHhh
Q 023219 115 DATFEQ 120 (285)
Q Consensus 115 ~~l~~~ 120 (285)
..++.+
T Consensus 74 ~~~L~~ 79 (205)
T PRK06231 74 QRFLNK 79 (205)
T ss_pred HHHHHH
Confidence 334443
No 72
>PRK09098 type III secretion system protein HrpB; Validated
Probab=72.27 E-value=23 Score=30.50 Aligned_cols=35 Identities=26% Similarity=0.051 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 023219 170 LRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIA 204 (285)
Q Consensus 170 ~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a 204 (285)
+++..+.+|+.+++..+..|+.+|+..+.+|+.+.
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777777665543
No 73
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.12 E-value=4.7 Score=34.25 Aligned_cols=64 Identities=31% Similarity=0.270 Sum_probs=46.4
Q ss_pred CeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 023219 140 GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 140 Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~ 205 (285)
.+.++.+.+. -.+...+..---..++|+|-+ =-..+|+.+++..+.+|+|||+++.+..+|.+.
T Consensus 178 DVSiT~l~F~-~efTaAiEaKQvA~QeAqRA~-F~VekA~qek~~~ivrAqGEaksAqliGeAi~n 241 (290)
T KOG3090|consen 178 DVSITELTFG-KEFTAAIEAKQVAAQEAQRAK-FIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN 241 (290)
T ss_pred cceeeeeecC-HHHHHHHHHHHHHHHHHhhhh-hhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC
Confidence 3566666664 566666666656666776643 345567888999999999999999999888754
No 74
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=68.42 E-value=60 Score=26.03 Aligned_cols=9 Identities=0% Similarity=0.183 Sum_probs=4.2
Q ss_pred CHHHHHhhH
Q 023219 113 DLDATFEQK 121 (285)
Q Consensus 113 ~~~~l~~~R 121 (285)
++..++.+|
T Consensus 32 pi~~~l~~R 40 (164)
T PRK14471 32 PILGAVKER 40 (164)
T ss_pred HHHHHHHHH
Confidence 344455543
No 75
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=67.11 E-value=34 Score=24.26 Aligned_cols=30 Identities=30% Similarity=0.189 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023219 167 AARLRLAANEKAEAEKILQIKRAEGEAESK 196 (285)
Q Consensus 167 A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~ 196 (285)
++.+.+..+..|+.++...+..|+.+++..
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~ 36 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEAREL 36 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444444444433
No 76
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=66.95 E-value=67 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.1
Q ss_pred CCHHHHHhhHH-HHHHHHH
Q 023219 112 LDLDATFEQKN-DIAKAVE 129 (285)
Q Consensus 112 ~~~~~l~~~R~-~i~~~i~ 129 (285)
-++..++.+|. .|.+.+.
T Consensus 45 kPi~~~l~~R~~~I~~~l~ 63 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLE 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34455555543 3444433
No 77
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.97 E-value=88 Score=27.03 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 023219 174 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQ 208 (285)
Q Consensus 174 ~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~ 208 (285)
+..+|+..+...+..|+.+++..+..|+.+.+..+
T Consensus 80 A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~ 114 (246)
T TIGR03321 80 AKEEAQAERQRLLDEAREEADEIREKWQEALRREQ 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666666666655544433
No 78
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.34 E-value=83 Score=26.49 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=8.1
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 023219 113 DLDATFEQKN-DIAKAVE 129 (285)
Q Consensus 113 ~~~~l~~~R~-~i~~~i~ 129 (285)
++..++.+|. .|...+.
T Consensus 77 pI~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3455666543 3444443
No 79
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.20 E-value=91 Score=26.93 Aligned_cols=9 Identities=0% Similarity=0.195 Sum_probs=4.2
Q ss_pred CHHHHHhhH
Q 023219 113 DLDATFEQK 121 (285)
Q Consensus 113 ~~~~l~~~R 121 (285)
++..++..|
T Consensus 29 Pi~~~l~~R 37 (246)
T TIGR03321 29 PILDAMDAR 37 (246)
T ss_pred HHHHHHHHH
Confidence 344455543
No 80
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=65.09 E-value=30 Score=28.81 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023219 169 RLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 169 ~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~ 198 (285)
.+.+.-+..|+.++++.+..|+.+++..+.
T Consensus 30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 30 QQAREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666665555
No 81
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=64.82 E-value=78 Score=25.98 Aligned_cols=9 Identities=0% Similarity=-0.056 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 023219 242 YFDTMKEIG 250 (285)
Q Consensus 242 ~le~l~~~~ 250 (285)
-++.-.+++
T Consensus 151 A~~~a~kil 159 (184)
T PRK13455 151 AVAAAADVI 159 (184)
T ss_pred HHHHHHHHH
Confidence 344444443
No 82
>PRK09098 type III secretion system protein HrpB; Validated
Probab=64.74 E-value=26 Score=30.22 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023219 167 AARLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 167 A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~ 198 (285)
|+.+.+.-+.+|+.++...+..|+.+++....
T Consensus 48 Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~ 79 (233)
T PRK09098 48 ARARAERIVAEARAQAEAILEAARREADRSAR 79 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666555555555554443
No 83
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=64.11 E-value=69 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=7.6
Q ss_pred CHHHHHhhHHH-HHHHH
Q 023219 113 DLDATFEQKND-IAKAV 128 (285)
Q Consensus 113 ~~~~l~~~R~~-i~~~i 128 (285)
++..++.+|.+ +...+
T Consensus 31 Pi~~~l~~R~~~I~~~l 47 (141)
T PRK08476 31 PLLKFMDNRNASIKNDL 47 (141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455665543 44444
No 84
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=63.55 E-value=50 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHH
Q 023219 178 AEAEKILQIKRAEGEAESKYLAGLG 202 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~Aea 202 (285)
+|.+....+..|+.++...+..|..
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~ 31 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEARE 31 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333
No 85
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=63.33 E-value=75 Score=25.31 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 023219 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIA 204 (285)
Q Consensus 175 ~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a 204 (285)
...|+.++...+..|+.+++..+..+..++
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a 92 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEAKRKT 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555544444444333
No 86
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=63.14 E-value=42 Score=25.23 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hh--HHHHHHHHHHHHHHHHHHHHHH
Q 023219 165 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYL----AG--LGIARQRQAIVDGLRDSVLAFS 222 (285)
Q Consensus 165 ~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~----~A--ea~a~a~~~~a~a~a~a~~~~~ 222 (285)
..|+-++...+..|+.++...+..|+.+++.... .+ +++.++..+.++|++++-.+++
T Consensus 24 eeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ 87 (108)
T COG2811 24 EEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666776666655555555433221 11 2333444445555554444444
No 87
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=62.62 E-value=78 Score=25.23 Aligned_cols=6 Identities=0% Similarity=0.418 Sum_probs=2.5
Q ss_pred HHHHHH
Q 023219 157 VKRAMN 162 (285)
Q Consensus 157 v~~a~~ 162 (285)
+...|+
T Consensus 47 i~~~l~ 52 (156)
T CHL00118 47 LLKVLD 52 (156)
T ss_pred HHHHHH
Confidence 444444
No 88
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.61 E-value=79 Score=25.33 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=4.5
Q ss_pred CHHHHHhhH
Q 023219 113 DLDATFEQK 121 (285)
Q Consensus 113 ~~~~l~~~R 121 (285)
++..++..|
T Consensus 32 pi~~~l~~R 40 (164)
T PRK14473 32 PVLNLLNER 40 (164)
T ss_pred HHHHHHHHH
Confidence 344555554
No 89
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=62.49 E-value=90 Score=26.39 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=58.1
Q ss_pred ecCCCcccCCCcEEEEEEEEE--EEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHH
Q 023219 55 DVRCETKTKDNVFVNVVASVQ--YRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEE 130 (285)
Q Consensus 55 ~~~~~v~T~D~~~v~v~~~v~--yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~ 130 (285)
+...+|.|+||..+.|-+.+. +|+. .+-...|+......+.+-.+..++++++.. -+.+..+|.+
T Consensus 105 dai~dVkTkDGy~~RV~~~~~T~~ra~-----------tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~ 173 (214)
T COG1890 105 DAIVDVKTKDGYVLRVKAMAFTRRRAK-----------TSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEE 173 (214)
T ss_pred eeEEEEEecCCcEEEEEEEEEEehhcc-----------cchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHH
Confidence 333488999999888877653 2222 233567999999999999999999999875 4666666666
Q ss_pred HHHHHhhccCeEEEEEEEe
Q 023219 131 ELEKAMSHYGYEIVQTLIV 149 (285)
Q Consensus 131 ~l~~~l~~~Gi~v~~v~I~ 149 (285)
..++..==.-++|..+.+.
T Consensus 174 ~akkIyPLr~veIrK~kvl 192 (214)
T COG1890 174 AAKKIYPLRKVEIRKSKVL 192 (214)
T ss_pred HhhhcccchheEEEeeeee
Confidence 6554433335666666653
No 90
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=62.04 E-value=80 Score=25.17 Aligned_cols=9 Identities=11% Similarity=0.475 Sum_probs=4.5
Q ss_pred CHHHHHhhH
Q 023219 113 DLDATFEQK 121 (285)
Q Consensus 113 ~~~~l~~~R 121 (285)
++..++..|
T Consensus 29 pi~~~l~~R 37 (159)
T PRK13461 29 KIKAVIDSR 37 (159)
T ss_pred HHHHHHHHH
Confidence 345555554
No 91
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=60.87 E-value=93 Score=29.57 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHh
Q 023219 236 MVLVTQYFDTMKEIG 250 (285)
Q Consensus 236 ~~l~~~~le~l~~~~ 250 (285)
.-+-.++++-+..+.
T Consensus 144 ~~lId~~i~~l~~~~ 158 (445)
T PRK13428 144 SATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHhhccC
Confidence 345567777777763
No 92
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=60.61 E-value=91 Score=25.35 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=5.7
Q ss_pred CCHHHHHhhHH
Q 023219 112 LDLDATFEQKN 122 (285)
Q Consensus 112 ~~~~~l~~~R~ 122 (285)
-++..++..|.
T Consensus 41 ~pi~~~l~~R~ 51 (173)
T PRK13453 41 GPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHH
Confidence 34555565543
No 93
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=60.46 E-value=1.1e+02 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 023219 175 NEKAEAEKILQIKRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 175 ~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~ 205 (285)
..+|+.++...+..|+.+++..+.+++.+.+
T Consensus 81 ~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie 111 (250)
T PRK14474 81 QEAADEQRQHLLNEAREDVATARDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665554433
No 94
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=60.29 E-value=19 Score=31.97 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhccCeEE--EEEEEeecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHH
Q 023219 126 KAVEEELEKAMSHYGYEI--VQTLIVDIEPD-EHVKRAMNEINAAARLRLAANEKAEAEKI--------LQIKRAEGEAE 194 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v--~~v~I~~i~~p-~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~--------~~~~~Aeaeae 194 (285)
+.+.+.+.+.+..- +.- ..+.|.++.+- .++=+.+.+.+ + ..+||-++. +...+||+++.
T Consensus 124 d~I~~~I~~~l~e~-l~~y~~GI~I~dV~I~~id~P~~V~~af--e------rM~aER~k~~~~~~~~~~~~~~ae~~~~ 194 (280)
T cd03406 124 DQIDENLKLALQKD-LTRMAPGLEIQAVRVTKPKIPEAIRRNY--E------LMEAEKTKLLIAIQKQKVVEKEAETERK 194 (280)
T ss_pred HHHHHHHHHHHHHH-HhccCCCcEEEEEEEEecCCCHHHHHHH--H------HHHHHHHhhhhccchhHHHHHHhhHHHH
Confidence 35566666655553 221 27888888873 44555554432 2 233444444 77888999999
Q ss_pred HHHHhhHHHHHHH
Q 023219 195 SKYLAGLGIARQR 207 (285)
Q Consensus 195 a~~~~Aea~a~a~ 207 (285)
+..++|+++|+--
T Consensus 195 ~~~~~a~~~~~~~ 207 (280)
T cd03406 195 KAVIEAEKVAQVA 207 (280)
T ss_pred HHHHHHHHHhhHH
Confidence 9999999888653
No 95
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.79 E-value=90 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023219 177 KAEAEKILQIKRAEGEAE 194 (285)
Q Consensus 177 ~Ae~~~~~~~~~Aeaeae 194 (285)
+|+.++...+..|+.+++
T Consensus 67 ~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 67 KLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 96
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=59.37 E-value=39 Score=27.97 Aligned_cols=8 Identities=0% Similarity=-0.317 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023219 177 KAEAEKIL 184 (285)
Q Consensus 177 ~Ae~~~~~ 184 (285)
+|+.++..
T Consensus 24 eA~~~aee 31 (185)
T PRK01194 24 EYSKRIEK 31 (185)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.29 E-value=99 Score=25.07 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=11.1
Q ss_pred cCCCCHHHHHhhHHH-HHHHHH
Q 023219 109 VPKLDLDATFEQKND-IAKAVE 129 (285)
Q Consensus 109 i~~~~~~~l~~~R~~-i~~~i~ 129 (285)
+.--++..++.+|.. |...+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALK 60 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 334446777776543 444443
No 98
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=58.07 E-value=1e+02 Score=25.06 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=5.7
Q ss_pred CCHHHHHhhHH
Q 023219 112 LDLDATFEQKN 122 (285)
Q Consensus 112 ~~~~~l~~~R~ 122 (285)
-++..++.+|.
T Consensus 41 kpi~~~l~~R~ 51 (175)
T PRK14472 41 GPILSALEERE 51 (175)
T ss_pred HHHHHHHHHHH
Confidence 34555666543
No 99
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.95 E-value=96 Score=24.82 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.6
Q ss_pred HHHHHH
Q 023219 157 VKRAMN 162 (285)
Q Consensus 157 v~~a~~ 162 (285)
+...|+
T Consensus 33 i~~~l~ 38 (164)
T PRK14471 33 ILGAVK 38 (164)
T ss_pred HHHHHH
Confidence 444444
No 100
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=57.67 E-value=1.1e+02 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023219 166 AAARLRLAANEKAEAEKILQIKRAE 190 (285)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~Ae 190 (285)
.|+++++.-+..|+.+++..+..|+
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~~a~ 62 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLEQAY 62 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666665555333
No 101
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=57.54 E-value=1e+02 Score=24.99 Aligned_cols=18 Identities=0% Similarity=0.165 Sum_probs=8.9
Q ss_pred CCHHHHHhhHHH-HHHHHH
Q 023219 112 LDLDATFEQKND-IAKAVE 129 (285)
Q Consensus 112 ~~~~~l~~~R~~-i~~~i~ 129 (285)
-++..++..|.. |...+.
T Consensus 39 kpi~~~l~~R~~~I~~~l~ 57 (173)
T PRK13460 39 DVILKALDERASGVQNDIN 57 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 345566666533 444433
No 102
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=57.46 E-value=49 Score=27.65 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=45.7
Q ss_pred CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 023219 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKA 135 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~~l~~~ 135 (285)
++.|+||..+.+-+.+.=+=. .-.+....|+......+.+.++..++++++.. -+.++.+|...++..
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT
T ss_pred EEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc
Confidence 678999988766655421110 11123457899999999999999999999875 555666665554433
No 103
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=56.99 E-value=1.1e+02 Score=25.23 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.6
Q ss_pred EEEcCCCCch
Q 023219 258 VFIPHGPGAV 267 (285)
Q Consensus 258 i~lp~~~~~~ 267 (285)
+++..++.+.
T Consensus 122 i~i~~~~~D~ 131 (198)
T PRK03963 122 VVVRSNERTL 131 (198)
T ss_pred EEEEEccccH
Confidence 4444444444
No 104
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=56.61 E-value=1e+02 Score=24.80 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=7.2
Q ss_pred HHHHHhhH-HHHHHHHH
Q 023219 114 LDATFEQK-NDIAKAVE 129 (285)
Q Consensus 114 ~~~l~~~R-~~i~~~i~ 129 (285)
+..++..| +.|...+.
T Consensus 35 i~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 35 LAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554 33444433
No 105
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.32 E-value=1.2e+02 Score=25.46 Aligned_cols=8 Identities=0% Similarity=0.194 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 023219 269 DIASQIRE 276 (285)
Q Consensus 269 ~~~~~~~~ 276 (285)
.+.+.+..
T Consensus 191 ~lI~~~i~ 198 (205)
T PRK06231 191 KLVDEFIR 198 (205)
T ss_pred HHHHHHHH
Confidence 44444433
No 106
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=55.93 E-value=1.1e+02 Score=25.02 Aligned_cols=10 Identities=10% Similarity=0.405 Sum_probs=5.2
Q ss_pred CHHHHHhhHH
Q 023219 113 DLDATFEQKN 122 (285)
Q Consensus 113 ~~~~l~~~R~ 122 (285)
++..++..|.
T Consensus 55 PI~~~l~~R~ 64 (181)
T PRK13454 55 RIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 107
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=52.10 E-value=1.3e+02 Score=24.62 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=12.7
Q ss_pred CCCCHHHHHhhHH-HHHHHHHHH
Q 023219 110 PKLDLDATFEQKN-DIAKAVEEE 131 (285)
Q Consensus 110 ~~~~~~~l~~~R~-~i~~~i~~~ 131 (285)
.--++..++..|. .|...+.+.
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777754 455555443
No 108
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.54 E-value=1.2e+02 Score=24.07 Aligned_cols=22 Identities=32% Similarity=0.134 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHhhHHHHHH
Q 023219 185 QIKRAEGEAESKYLAGLGIARQ 206 (285)
Q Consensus 185 ~~~~Aeaeaea~~~~Aea~a~a 206 (285)
.+..|+.+++..+..|+.+++.
T Consensus 62 ~L~~A~~ea~~ii~~A~~~a~~ 83 (159)
T PRK09173 62 KRKEAEKEAADIVAAAEREAEA 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 109
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=51.17 E-value=1.3e+02 Score=26.43 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 023219 166 AAARLRLAANEKAEAEKILQIKRAEGEAESKYLAG 200 (285)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~A 200 (285)
.+..+.+..+.+|+.+.+.....|+.+++..+.+|
T Consensus 85 ~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 85 KKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555444
No 110
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=50.37 E-value=1.2e+02 Score=23.81 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.8
Q ss_pred HHHHhhH
Q 023219 115 DATFEQK 121 (285)
Q Consensus 115 ~~l~~~R 121 (285)
..++.+|
T Consensus 30 ~~~l~~R 36 (156)
T PRK05759 30 MKALEER 36 (156)
T ss_pred HHHHHHH
Confidence 3344443
No 111
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=46.17 E-value=1.5e+02 Score=23.55 Aligned_cols=6 Identities=0% Similarity=-0.341 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023219 244 DTMKEI 249 (285)
Q Consensus 244 e~l~~~ 249 (285)
+...++
T Consensus 131 ~~a~ki 136 (159)
T PRK13461 131 LLSSKA 136 (159)
T ss_pred HHHHHH
Confidence 333333
No 112
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=44.76 E-value=1.4e+02 Score=22.96 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 023219 114 LDATFEQ 120 (285)
Q Consensus 114 ~~~l~~~ 120 (285)
+..++.+
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 3344444
No 113
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=44.14 E-value=1.7e+02 Score=23.53 Aligned_cols=6 Identities=17% Similarity=0.617 Sum_probs=2.5
Q ss_pred HHHHHH
Q 023219 157 VKRAMN 162 (285)
Q Consensus 157 v~~a~~ 162 (285)
+..+|+
T Consensus 31 i~~~l~ 36 (161)
T COG0711 31 ILKALD 36 (161)
T ss_pred HHHHHH
Confidence 344444
No 114
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.74 E-value=1.8e+02 Score=23.43 Aligned_cols=9 Identities=0% Similarity=0.132 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 023219 241 QYFDTMKEI 249 (285)
Q Consensus 241 ~~le~l~~~ 249 (285)
.|-|.+.++
T Consensus 125 ~~~~~~i~~ 133 (155)
T PRK06569 125 NKSEAIIKL 133 (155)
T ss_pred hHHHHHHHH
Confidence 344444433
No 115
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=41.33 E-value=1.7e+02 Score=22.93 Aligned_cols=6 Identities=17% Similarity=0.014 Sum_probs=2.2
Q ss_pred HHHHHh
Q 023219 245 TMKEIG 250 (285)
Q Consensus 245 ~l~~~~ 250 (285)
...+++
T Consensus 131 ~a~k~l 136 (156)
T PRK05759 131 GAEKIL 136 (156)
T ss_pred HHHHHH
Confidence 333333
No 116
>PTZ00491 major vault protein; Provisional
Probab=41.22 E-value=1.3e+02 Score=30.86 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=10.4
Q ss_pred EEEecCCeEEEEeec--Ceee
Q 023219 7 CIQVDQSTVAIKETF--GKFD 25 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~--Gk~~ 25 (285)
.+...|+|.--+..+ |+++
T Consensus 491 ~v~L~pdE~ftvlsLSgg~PK 511 (850)
T PTZ00491 491 LVMLEPDEEFTVLSLSGGKPK 511 (850)
T ss_pred eEEecCCCceEEEEecCCCCC
Confidence 345666666665543 5544
No 117
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.57 E-value=2e+02 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=9.5
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 023219 113 DLDATFEQKN-DIAKAVEE 130 (285)
Q Consensus 113 ~~~~l~~~R~-~i~~~i~~ 130 (285)
++..++.+|. .|...+.+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777654 34444433
No 118
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=40.32 E-value=51 Score=25.86 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=34.7
Q ss_pred EEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhcc-CeEEE
Q 023219 71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHY-GYEIV 144 (285)
Q Consensus 71 ~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~-Gi~v~ 144 (285)
.+.+.||+.+|.+ .+.++ +. +-+.+++|-++.++..|.+++.+..-.=-+..... ||.|.
T Consensus 94 TG~v~WR~rpPSv--~vrgv---ea---------V~e~L~rmgf~rFiRTk~EinKeAiLnepe~~kGiaGiki~ 154 (170)
T COG4396 94 TGLVKWRIRPPSV--KVRGV---EA---------VLEWLSRMGFARFIRTKKEINKEAILNEPEFSKGIAGIKIV 154 (170)
T ss_pred eeeEEEeecCCcc--eeccH---HH---------HHHHHHHhhHHHHHHhHHHhcHHHHhCChhhhcCCCceeee
Confidence 5679999999743 22222 22 22344577888888888888776442222222222 66654
No 119
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=40.20 E-value=3.2e+02 Score=27.46 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=21.4
Q ss_pred HHHHHHH-HhhccCeEEEEEE----EeecCCCHHHHHHHHH
Q 023219 128 VEEELEK-AMSHYGYEIVQTL----IVDIEPDEHVKRAMNE 163 (285)
Q Consensus 128 i~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~v~~a~~~ 163 (285)
+.+.|++ .|...||.|++-. +-....|+++.+..++
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~ 559 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEE 559 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHH
Confidence 3556676 5888899998852 2223344555544443
No 120
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=38.22 E-value=2.7e+02 Score=24.19 Aligned_cols=9 Identities=0% Similarity=0.261 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023219 240 TQYFDTMKE 248 (285)
Q Consensus 240 ~~~le~l~~ 248 (285)
.++++.+..
T Consensus 151 d~~i~~l~~ 159 (250)
T PRK14474 151 GIFIARLEH 159 (250)
T ss_pred HHHHHHhcc
Confidence 445544433
No 121
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=37.79 E-value=2.1e+02 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.084 Sum_probs=5.4
Q ss_pred cEEEEcCCCCchh
Q 023219 256 NSVFIPHGPGAVK 268 (285)
Q Consensus 256 ~~i~lp~~~~~~~ 268 (285)
..+++-.+|.+..
T Consensus 176 ~~i~I~v~p~d~~ 188 (255)
T TIGR03825 176 DEVSIYVHPHWYE 188 (255)
T ss_pred CcEEEEECHHHHH
Confidence 3444433344433
No 122
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=3.6e+02 Score=25.74 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=10.3
Q ss_pred HHHHhhHHHHHHHhhHHHHH
Q 023219 186 IKRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 186 ~~~Aeaeaea~~~~Aea~a~ 205 (285)
..+|++|.|.++.+|.|+++
T Consensus 209 ~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 209 MERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555444
No 123
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=37.13 E-value=2.5e+02 Score=23.46 Aligned_cols=7 Identities=0% Similarity=0.586 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 023219 243 FDTMKEI 249 (285)
Q Consensus 243 le~l~~~ 249 (285)
.+.+.+.
T Consensus 111 ~~~~~~~ 117 (194)
T COG1390 111 IEALEKL 117 (194)
T ss_pred HHHHHhc
Confidence 3334444
No 124
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=35.46 E-value=4e+02 Score=25.35 Aligned_cols=16 Identities=0% Similarity=0.241 Sum_probs=6.9
Q ss_pred HHHHHhhH-HHHHHHHH
Q 023219 114 LDATFEQK-NDIAKAVE 129 (285)
Q Consensus 114 ~~~l~~~R-~~i~~~i~ 129 (285)
+..++..| +.|.+.+.
T Consensus 26 i~~~l~~R~~~I~~~L~ 42 (445)
T PRK13428 26 VRRLMAARQDTVRQQLA 42 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455554 33444333
No 125
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=35.26 E-value=1.9e+02 Score=21.62 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023219 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 161 ~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~ 198 (285)
|..-..||.+....+.+|+..+...+..|+-||+..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666655544
No 126
>PRK15322 invasion protein OrgB; Provisional
Probab=35.16 E-value=2.8e+02 Score=23.43 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 023219 173 AANEKAEAEKILQIKRAEGEAESKYLAGL 201 (285)
Q Consensus 173 a~~~~Ae~~~~~~~~~Aeaeaea~~~~Ae 201 (285)
.-+.+|+.++...+..|+.|+|+....|.
T Consensus 16 ~l~~qA~~kA~~ii~qA~~eaE~ir~~A~ 44 (210)
T PRK15322 16 RLEQQARRRAKRILRQAEEEAETLRMYAY 44 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666777777777666663
No 127
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=33.06 E-value=2.6e+02 Score=22.49 Aligned_cols=13 Identities=15% Similarity=0.251 Sum_probs=5.4
Q ss_pred HHHHHHhhHHHHH
Q 023219 184 LQIKRAEGEAESK 196 (285)
Q Consensus 184 ~~~~~Aeaeaea~ 196 (285)
..+..|+.+++..
T Consensus 69 ~~L~~Ar~eA~~I 81 (155)
T PRK06569 69 EEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 128
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=33.02 E-value=2.6e+02 Score=23.76 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023219 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLA 220 (285)
Q Consensus 173 a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~ 220 (285)
+....|...+...+..|...|++++..|+.+..+.+.+++-+++.++.
T Consensus 34 ~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~ 81 (224)
T PRK15354 34 AQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRK 81 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 129
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=32.57 E-value=3.5e+02 Score=23.78 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 023219 242 YFDTMKEI 249 (285)
Q Consensus 242 ~le~l~~~ 249 (285)
--++|..+
T Consensus 195 i~~al~~l 202 (281)
T PRK06669 195 VKELLKEV 202 (281)
T ss_pred HHHHHHHc
Confidence 34555554
No 130
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=30.49 E-value=1.6e+02 Score=25.59 Aligned_cols=22 Identities=45% Similarity=0.416 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 023219 175 NEKAEAEKILQIKRAEGEAESK 196 (285)
Q Consensus 175 ~~~Ae~~~~~~~~~Aeaeaea~ 196 (285)
+..|+.++...+..|+.+++..
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~ 67 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAI 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 131
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=30.39 E-value=2.9e+02 Score=22.16 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=7.8
Q ss_pred CCHHHHHhhH-HHHHHHHH
Q 023219 112 LDLDATFEQK-NDIAKAVE 129 (285)
Q Consensus 112 ~~~~~l~~~R-~~i~~~i~ 129 (285)
-++..++.+| ..|.+.+.
T Consensus 29 ~pi~~~l~~R~~~I~~~l~ 47 (161)
T COG0711 29 KPILKALDERQAKIADDLA 47 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455554 33444433
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.08 E-value=6.3e+02 Score=27.48 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=10.5
Q ss_pred HHHhhHHHHHHHhhHHHHH
Q 023219 187 KRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 187 ~~Aeaeaea~~~~Aea~a~ 205 (285)
.+|+..|++...+|++.+.
T Consensus 1446 seA~~~Aq~~~~~a~as~~ 1464 (1758)
T KOG0994|consen 1446 SEAQQSAQRALEQANASRS 1464 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555443
No 133
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=63 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=24.9
Q ss_pred ceEEEecCCeEEEEeecCeeeee--eCCcceeec
Q 023219 5 LGCIQVDQSTVAIKETFGKFDDV--LEPGCHCLP 36 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~--~~pG~h~~~ 36 (285)
.|+..|+++...++..||+--.. --||..|++
T Consensus 89 gcln~ieendevlv~gfgrkg~avgdipgvrfkv 122 (143)
T KOG1749|consen 89 GCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122 (143)
T ss_pred CceeeeccCCeeeeeccCccCccccCCCceEEEE
Confidence 36778999999999999985433 368988874
No 134
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.84 E-value=2.8e+02 Score=21.27 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 023219 157 VKRAMNE 163 (285)
Q Consensus 157 v~~a~~~ 163 (285)
+...|+.
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 4444443
No 135
>PRK15322 invasion protein OrgB; Provisional
Probab=27.18 E-value=1.9e+02 Score=24.31 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCCCch
Q 023219 219 LAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAV 267 (285)
Q Consensus 219 ~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~ 267 (285)
..++.++. .|++. ..+...|+-.+... ...-.+++|.+.-..
T Consensus 83 ~lls~~Ld---~pd~L-L~~le~Wl~~l~~~---~~pL~l~lP~~ak~~ 124 (210)
T PRK15322 83 ELFSAAVD---HPETL-LTVLDEWLRDFDKP---EGQLFLTLPVNAKKD 124 (210)
T ss_pred HHHHHHcc---CHHHH-HHHHHHHHHhCccc---cCceeEecChhhhhh
Confidence 44555554 34432 23334455555554 256678899875433
No 136
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.83 E-value=3.6e+02 Score=22.13 Aligned_cols=14 Identities=7% Similarity=-0.237 Sum_probs=6.1
Q ss_pred CCcEEEEcCCCCch
Q 023219 254 KTNSVFIPHGPGAV 267 (285)
Q Consensus 254 ~~~~i~lp~~~~~~ 267 (285)
.-.+..-|.|..-+
T Consensus 121 ~i~i~~~~~D~~~~ 134 (198)
T PRK03963 121 KVVVRSNERTLKLI 134 (198)
T ss_pred cEEEEEccccHHHH
Confidence 34455544443333
No 137
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=26.27 E-value=3.5e+02 Score=21.88 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 023219 237 VLVTQYFDTMKEI 249 (285)
Q Consensus 237 ~l~~~~le~l~~~ 249 (285)
+|.....+++..+
T Consensus 98 ~L~~li~~~~~~~ 110 (198)
T PF01991_consen 98 FLKKLIEEAAEKL 110 (198)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 3433334444444
No 138
>PRK06328 type III secretion system protein; Validated
Probab=25.70 E-value=2.5e+02 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCCchhhH
Q 023219 242 YFDTMKEIGASSKTNSVFIPHGPGAVKDI 270 (285)
Q Consensus 242 ~le~l~~~~~~~~~~~i~lp~~~~~~~~~ 270 (285)
--++|..+. +...+.+-.+|.+...+
T Consensus 121 V~~aL~~l~---~~~~v~I~VnP~D~~~v 146 (223)
T PRK06328 121 IANSLKELT---QHKRIIIHVNPKDLAIV 146 (223)
T ss_pred HHHHHHhcc---cCCceEEEECHHHHHHH
Confidence 344454442 23344444445555543
No 139
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=25.37 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcc-CeEEEEEEE
Q 023219 124 IAKAVEEELEKAMSHY-GYEIVQTLI 148 (285)
Q Consensus 124 i~~~i~~~l~~~l~~~-Gi~v~~v~I 148 (285)
+.+.+++.+.+.+..+ |+.+..|+|
T Consensus 77 v~~~iq~~V~~~v~~~tg~~v~~V~V 102 (108)
T PF03780_consen 77 VAEEIQEKVKEAVEEMTGIEVSEVNV 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCeeEEEEE
Confidence 3445555555556665 777766664
No 140
>PF10056 DUF2293: Uncharacterized conserved protein (DUF2293); InterPro: IPR018744 Proteins in this entry are found the bacteria and fungi, they have no known function.
Probab=25.17 E-value=2.5e+02 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHh---hHHHHHHHHHHHHHHHhhccC
Q 023219 93 TRSQIQAYVFDVIRASVPKLDLDATFE---QKNDIAKAVEEELEKAMSHYG 140 (285)
Q Consensus 93 ~~~~l~~~~~~~lr~vi~~~~~~~l~~---~R~~i~~~i~~~l~~~l~~~G 140 (285)
.+..+.-.+...+|..-..|+ +|+. +|++-...+.+.+++.+..||
T Consensus 38 l~~~v~lAV~AhiRH~~T~YD--~LL~~g~~R~~AR~~V~~~~~~~L~~Wr 86 (86)
T PF10056_consen 38 LERAVQLAVIAHIRHQHTDYD--RLLREGYDRDEARRFVADRVNAVLREWR 86 (86)
T ss_pred HHHHHHHHHHHHHHhcCCcHH--HHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 344666777788888766665 7776 499999999999999999986
No 141
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=23.60 E-value=63 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEEeecCCCH
Q 023219 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDE 155 (285)
Q Consensus 125 ~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 155 (285)
.-++++.|.+.|..+|.+|.++.-.+.++|+
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 3467888888999999999998765555565
No 142
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=1.3e+02 Score=23.43 Aligned_cols=35 Identities=14% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhcc-CeEEEEEE--EeecCCCHH
Q 023219 122 NDIAKAVEEELEKAMSHY-GYEIVQTL--IVDIEPDEH 156 (285)
Q Consensus 122 ~~i~~~i~~~l~~~l~~~-Gi~v~~v~--I~~i~~p~~ 156 (285)
.+++..+++.+...+..+ |+.+.+|+ +.+|..+.+
T Consensus 82 peVa~~Iq~~V~~~v~~mtgl~v~~VNV~V~gV~~~k~ 119 (131)
T COG1302 82 PEVAENIQERVKEEVENMTGLKVVEVNVHVVGVKVKKE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEEEEEEEEeEecCC
Confidence 345566666666667776 88887766 567776643
No 143
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.49 E-value=4.5e+02 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.013 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHH
Q 023219 178 AEAEKILQIKRAEGEAESKYLAGLG 202 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~Aea 202 (285)
|+..+...+..|+.+++..+..|+.
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~ 127 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNE 127 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 144
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.90 E-value=32 Score=26.23 Aligned_cols=34 Identities=18% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023219 184 LQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS 217 (285)
Q Consensus 184 ~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a 217 (285)
..+..|+.+++..+..|+.+|...+..|..++..
T Consensus 78 ~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~ 111 (131)
T PF05103_consen 78 EIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAER 111 (131)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555545444443
No 145
>PTZ00321 ribosomal protein L11; Provisional
Probab=20.82 E-value=4.5e+02 Score=23.77 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=26.1
Q ss_pred HHcCCCCHHHHHh----hHHHHH-------HHHHHHHHHHhhccCeEEEEEE
Q 023219 107 ASVPKLDLDATFE----QKNDIA-------KAVEEELEKAMSHYGYEIVQTL 147 (285)
Q Consensus 107 ~vi~~~~~~~l~~----~R~~i~-------~~i~~~l~~~l~~~Gi~v~~v~ 147 (285)
+.+|..|+++++. +..++. +.+...+-..+..+||+|+...
T Consensus 144 e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGKD 195 (342)
T PTZ00321 144 HYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGVD 195 (342)
T ss_pred ceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEeccc
Confidence 5788888888876 233322 2233344456778899999743
Done!