Query 023221
Match_columns 285
No_of_seqs 140 out of 1421
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 03:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 5E-44 1.7E-48 308.3 21.9 233 45-282 4-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 4.8E-44 1.6E-48 309.2 19.4 225 50-282 3-234 (303)
3 2lck_A Mitochondrial uncouplin 100.0 6.9E-44 2.4E-48 308.1 14.7 228 5-242 53-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.4E-42 4.9E-47 299.1 16.9 224 5-239 56-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 31.1 58 0.002 21.2 3.6 41 207-247 33-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 21.7 96 0.0033 20.1 3.4 41 207-247 33-73 (81)
7 2acm_A Mucin-1; auto-catalytic 18.9 31 0.001 20.9 0.4 20 193-212 40-59 (66)
8 3cx5_H Cytochrome B-C1 complex 16.1 1.4E+02 0.0047 20.0 3.2 41 206-246 42-82 (93)
9 1y9i_A Low temperature require 15.0 1.4E+02 0.0046 22.7 3.3 42 224-265 111-157 (178)
10 3f2e_A SIRV coat protein; four 11.6 1.4E+02 0.0049 19.0 2.1 72 189-261 5-83 (100)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5e-44 Score=308.28 Aligned_cols=233 Identities=29% Similarity=0.473 Sum_probs=200.4
Q ss_pred CchhHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcCCCCc-ccccccccHHHHHHHHHhhhhhhhhhhchhhhhhccchh
Q 023221 45 QIGTISQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD-TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPY 123 (285)
Q Consensus 45 ~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~-~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 123 (285)
..+....+++|++|++++.++++|+|++|+|+|++..... ....+|++.++++++++++||++|||||+.+++++.+++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3466789999999999999999999999999999864321 124468999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHHHHhcCCcccccCCCCchhhHHHHHhhhHHHHHHHHhhccHHHHHHHHHhccC----ccccccHHHHH
Q 023221 124 SSVNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHAL 199 (285)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~ 199 (285)
.+++|.+||.+|+.+..... ............+++|++||++++++++|+|+||+|+|.+.. ..+|.++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999996543211 111112345678999999999999999999999999999853 34689999999
Q ss_pred HHHHHhhCccccccchhHhhhhhhhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHhHHHHhHhhhcccchHHHHHHHhc
Q 023221 200 QTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTETEDVGLALHQVF 279 (285)
Q Consensus 200 ~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~r~~~~ 279 (285)
++++++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+. .+.+.+..+++|++||++++++++|+|++|+|+|
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999999999977543 2345688899999999999999999999999998
Q ss_pred cCC
Q 023221 280 NQS 282 (285)
Q Consensus 280 ~~~ 282 (285)
.+.
T Consensus 239 ~~~ 241 (297)
T 1okc_A 239 MQS 241 (297)
T ss_dssp TTT
T ss_pred hcC
Confidence 764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.8e-44 Score=309.16 Aligned_cols=225 Identities=20% Similarity=0.339 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhcCCCCc----ccccccccHHHHHHHHHhhhhhhhhhhchhhhhhccchhhh
Q 023221 50 SQLLAGGVAGALSKTCTAPLARLTILFQVQGMHSD----TATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSS 125 (285)
Q Consensus 50 ~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 125 (285)
.++++|++|++++.++++|+|++|+|+|++..... ....+|++.++++++++++||++|||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999865321 11346889999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhcCCcccccCCCCchhhHHHHHhhhHHHHHHHHhhccHHHHHHHHHhccC---ccccccHHHHHHHH
Q 023221 126 VNFYAYEHYKKLLHAIPVVESQGENMSSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN---VIYYRGICHALQTI 202 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~---~~~~~~~~~~~~~i 202 (285)
++|.+||.+|+.+.+.. + ..+....+++|++||+++.++++|+|++|+|+|.+.. ...|.+.++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~------~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC------c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 99999999999886421 1 2456788999999999999999999999999999863 34689999999999
Q ss_pred HHhhCccccccchhHhhhhhhhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHhHHHHhHhhhcccchHHHHHHHhccCC
Q 023221 203 CRDEGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSGIASSTETEDVGLALHQVFNQS 282 (285)
Q Consensus 203 ~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~r~~~~~~~ 282 (285)
+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+....+.+.+..+++|++||++++++++|+|++|+|+|.+.
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998776555567788999999999999999999999999999875
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.9e-44 Score=308.14 Aligned_cols=228 Identities=26% Similarity=0.369 Sum_probs=195.6
Q ss_pred hhhhheeecccccccccCCcccchhccH--------HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 023221 5 ARVGVVVEGGQRGLSSGNGSVSVDKITL--------QQQQKQMLQNQSQIGTISQLLAGGVAGALSKTCTAPLARLTILF 76 (285)
Q Consensus 5 ~~~~i~~~~G~~gl~rG~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~ 76 (285)
+...|+++||++|||||+.+++++..+. +..++.+.+.....+....+++|++|++++.++++|+|+||+|+
T Consensus 53 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl 132 (303)
T 2lck_A 53 TILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF 132 (303)
T ss_dssp HHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 4567899999999999999998876654 23333333322346778899999999999999999999999999
Q ss_pred HhcCCCCcccccccccHHHHHHHHHhhhhhhhhhhchhhhhhccchhhhHHHHhHHHHHHHHhcCCcccccCCCCchhhH
Q 023221 77 QVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENMSSDLF 156 (285)
Q Consensus 77 q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (285)
|++... ....+|++.++++++|+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+.. ....+..
T Consensus 133 q~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------~~~~~~~ 203 (303)
T 2lck_A 133 QAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------LMTDDLP 203 (303)
T ss_dssp HHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------SCCSCHH
T ss_pred hccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCchH
Confidence 998643 1234688999999999999999999999999999999999999999999999875422 1123456
Q ss_pred HHHHhhhHHHHHHHHhhccHHHHHHHHHhccCccccccHHHHHHHHHHhhCccccccchhHhhhhhhhhHHHHHHHHHHH
Q 023221 157 VHFVSGGLAGITAASVTYPLDLVRTRLAAQTNVIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIAISFSVYETL 236 (285)
Q Consensus 157 ~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~ 236 (285)
..+++|++||++++++++|+|+||+|+|.+... .|.++++|+++++++||++|||||+.|+++|.+|..+++|.+||.+
T Consensus 204 ~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~-~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~ 282 (303)
T 2lck_A 204 CHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG-QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS-SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 789999999999999999999999999998643 5899999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 023221 237 RSFWQS 242 (285)
Q Consensus 237 k~~~~~ 242 (285)
|+.+.+
T Consensus 283 k~~l~~ 288 (303)
T 2lck_A 283 KRALMA 288 (303)
T ss_dssp HSCCCC
T ss_pred HHHHHH
Confidence 987654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-42 Score=299.11 Aligned_cols=224 Identities=23% Similarity=0.314 Sum_probs=185.0
Q ss_pred hhhhheeecccccccccCCcccchhccHH--------HHHHHHhhcc-C--C--chhHHHHHHHHHHHHHHHhhhccHHH
Q 023221 5 ARVGVVVEGGQRGLSSGNGSVSVDKITLQ--------QQQKQMLQNQ-S--Q--IGTISQLLAGGVAGALSKTCTAPLAR 71 (285)
Q Consensus 5 ~~~~i~~~~G~~gl~rG~~~~~~~~~~~~--------~~~~~~~~~~-~--~--~~~~~~~~~g~~a~~~~~~i~~Pld~ 71 (285)
+...|+++||++|||||+.+++++.++.. ..+..+.... . . ......+++|++|++++.++++|+|+
T Consensus 56 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ 135 (297)
T 1okc_A 56 CVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDF 135 (297)
T ss_dssp HHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45678999999999999999988776652 2233222221 1 1 23467899999999999999999999
Q ss_pred HHHHHHhcCCCCcccccccccHHHHHHHHHhhhhhhhhhhchhhhhhccchhhhHHHHhHHHHHHHHhcCCcccccCCCC
Q 023221 72 LTILFQVQGMHSDTATLRKASIWREASRIISEEGFRAFWKGNLVTIAHRLPYSSVNFYAYEHYKKLLHAIPVVESQGENM 151 (285)
Q Consensus 72 vk~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (285)
||+|+|++.... ....+|++.++++++|+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+. .
T Consensus 136 vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---------~ 205 (297)
T 1okc_A 136 ARTRLAADVGKG-AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---------K 205 (297)
T ss_dssp HHHHHHHCCCSS-TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------G
T ss_pred HHHHHhccccCC-CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------C
Confidence 999999986432 123468899999999999999999999999999999999999999999999865421 1
Q ss_pred chhhHHHHHhhhHHHHHHHHhhccHHHHHHHHHhccC----ccccccHHHHHHHHHHhhCccccccchhHhhhhhhhhHH
Q 023221 152 SSDLFVHFVSGGLAGITAASVTYPLDLVRTRLAAQTN----VIYYRGICHALQTICRDEGIWGLYKGLGATLLGVGPSIA 227 (285)
Q Consensus 152 ~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 227 (285)
..+....+++|++||++++++++|+|+||+|+|.+.. ...|.++++|+++++++||++|||||+.|+++|. +..+
T Consensus 206 ~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~ 284 (297)
T 1okc_A 206 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGA 284 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccce
Confidence 2345677899999999999999999999999998753 2468999999999999999999999999999996 5788
Q ss_pred HHHHHHHHHHHH
Q 023221 228 ISFSVYETLRSF 239 (285)
Q Consensus 228 ~~~~~y~~~k~~ 239 (285)
++|.+||.+|+.
T Consensus 285 ~~f~~ye~~k~~ 296 (297)
T 1okc_A 285 FVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHTC---
T ss_pred eeehHHHHHHhh
Confidence 999999998875
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=31.06 E-value=58 Score=21.23 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=30.1
Q ss_pred CccccccchhHhhhhhhhhHHHHHHHHHHHHHHHhccCCCC
Q 023221 207 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQND 247 (285)
Q Consensus 207 G~~gly~G~~~~~~~~~~~~~~~~~~y~~~k~~~~~~~~~~ 247 (285)
|+-..+|-+...++..+|..++.+.+|+..++.-+....++
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444455667778888899999999999999887765444
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=21.72 E-value=96 Score=20.15 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.6
Q ss_pred CccccccchhHhhhhhhhhHHHHHHHHHHHHHHHhccCCCC
Q 023221 207 GIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQND 247 (285)
Q Consensus 207 G~~gly~G~~~~~~~~~~~~~~~~~~y~~~k~~~~~~~~~~ 247 (285)
|+...+|-+...++..+|..++.+.+|+..++..+....++
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 44455555667777888888999999999999887765444
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.87 E-value=31 Score=20.95 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHhhCccccc
Q 023221 193 RGICHALQTICRDEGIWGLY 212 (285)
Q Consensus 193 ~~~~~~~~~i~~~~G~~gly 212 (285)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778899999999988876
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=16.07 E-value=1.4e+02 Score=20.02 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=32.3
Q ss_pred hCccccccchhHhhhhhhhhHHHHHHHHHHHHHHHhccCCC
Q 023221 206 EGIWGLYKGLGATLLGVGPSIAISFSVYETLRSFWQSRRQN 246 (285)
Q Consensus 206 ~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~k~~~~~~~~~ 246 (285)
+|+-..+|-+...++..+|..++.+.+|+..++..+..+.+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~K 82 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSK 82 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhcc
Confidence 46667777777888888899999999999999887765443
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.99 E-value=1.4e+02 Score=22.69 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCC-----CCchhHHHHHhHHHHhHhhh
Q 023221 224 PSIAISFSVYETLRSFWQSRRQ-----NDSPVLVSLACGSLSGIASS 265 (285)
Q Consensus 224 ~~~~~~~~~y~~~k~~~~~~~~-----~~~~~~~~~~~~~~a~~~a~ 265 (285)
....+.|-.||..|.......+ .-...+.+.++|+.|++++-
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 3556778889988865443322 22357888888888888653
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.56 E-value=1.4e+02 Score=19.02 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=39.7
Q ss_pred ccccccHHHHHHHHHHhhCcc----ccccchhHhhhhhhh---hHHHHHHHHHHHHHHHhccCCCCchhHHHHHhHHHHh
Q 023221 189 VIYYRGICHALQTICRDEGIW----GLYKGLGATLLGVGP---SIAISFSVYETLRSFWQSRRQNDSPVLVSLACGSLSG 261 (285)
Q Consensus 189 ~~~~~~~~~~~~~i~~~~G~~----gly~G~~~~~~~~~~---~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~a~ 261 (285)
.++++++-+-...++.+.|+. .+|.|+.....|..- ..-...-..+-+|.++......+ +.+.+.+..++.|
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaralnr~g~gpalvnminglkayyisafnan-p~vldavtniitg 83 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAFNAN-PTVLDAVTDIITG 83 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHS
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHhcCCchHHHHHHhhhhHhhhHhhcCC-cHHHHHHHHhhcC
Confidence 457788888888888888864 589998877665422 11122334455566655544443 2244444444333
Done!