Query 023222
Match_columns 285
No_of_seqs 221 out of 1264
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01770 sec-independent trans 99.9 1.7E-24 3.6E-29 189.3 2.0 101 122-236 1-101 (171)
2 PRK04654 sec-independent trans 99.8 6.5E-22 1.4E-26 178.1 0.1 84 122-214 1-84 (214)
3 PRK00404 tatB sec-independent 99.8 3.2E-20 6.9E-25 158.5 6.0 65 122-193 1-65 (141)
4 PRK00708 sec-independent trans 99.8 1.5E-19 3.2E-24 162.6 5.1 74 122-199 1-74 (209)
5 TIGR01410 tatB twin arginine-t 99.8 1.9E-19 4.1E-24 140.1 4.9 73 123-202 1-73 (80)
6 PRK01919 tatB sec-independent 99.8 6.7E-19 1.5E-23 154.1 4.9 64 122-192 1-64 (169)
7 PRK04098 sec-independent trans 99.7 1.3E-18 2.8E-23 150.9 5.8 66 122-194 1-66 (158)
8 PRK14858 tatA twin arginine tr 99.7 2.1E-18 4.6E-23 141.8 6.4 64 122-192 1-64 (108)
9 PRK14857 tatA twin arginine tr 99.7 5.4E-18 1.2E-22 135.5 8.2 49 120-168 1-49 (90)
10 PRK00182 tatB sec-independent 99.7 2.9E-18 6.2E-23 149.1 7.1 68 122-194 1-69 (160)
11 PRK03100 sec-independent trans 99.7 1.6E-18 3.4E-23 147.3 4.8 70 122-196 1-71 (136)
12 COG1826 TatA Sec-independent p 99.7 8.2E-18 1.8E-22 133.3 6.1 47 122-168 1-47 (94)
13 PRK01371 sec-independent trans 99.7 2.3E-17 5E-22 140.4 8.8 56 122-180 1-56 (137)
14 PRK14861 tatA twin arginine tr 99.7 9.9E-17 2.1E-21 120.1 6.7 47 122-168 2-48 (61)
15 PRK14859 tatA twin arginine tr 99.7 6E-17 1.3E-21 122.1 3.8 46 122-167 1-46 (63)
16 PRK14860 tatA twin arginine tr 99.7 7.2E-17 1.6E-21 122.1 4.0 45 122-166 1-45 (64)
17 PRK00575 tatA twin arginine tr 99.6 3.6E-16 7.7E-21 125.7 4.7 47 122-168 1-47 (92)
18 PF02416 MttA_Hcf106: mttA/Hcf 99.6 7.8E-16 1.7E-20 111.8 5.6 45 125-169 1-45 (53)
19 PRK03625 tatE twin arginine tr 99.6 7E-16 1.5E-20 117.7 4.9 46 122-167 1-46 (67)
20 TIGR01411 tatAE twin arginine- 99.6 8.7E-16 1.9E-20 109.6 4.7 45 124-168 1-45 (47)
21 PRK01833 tatA twin arginine tr 99.6 1E-15 2.3E-20 118.8 4.4 46 122-167 1-46 (74)
22 PRK00191 tatA twin arginine tr 99.6 4.9E-15 1.1E-19 117.5 5.8 47 123-169 1-47 (84)
23 PRK02958 tatA twin arginine tr 99.5 3.5E-15 7.7E-20 115.6 4.3 46 122-167 1-46 (73)
24 PRK04598 tatA twin arginine tr 99.5 3.2E-15 7E-20 117.8 4.1 46 122-167 1-46 (81)
25 PRK01470 tatA twin arginine tr 99.5 5E-15 1.1E-19 107.8 4.2 43 124-166 2-44 (51)
26 PRK04561 tatA twin arginine tr 99.5 3.7E-15 8E-20 116.1 3.5 46 122-167 1-46 (75)
27 PRK01614 tatE twin arginine tr 99.5 4.1E-15 8.9E-20 118.1 3.5 45 122-166 1-45 (85)
28 PRK03554 tatA twin arginine tr 99.5 7.5E-15 1.6E-19 117.6 4.5 45 122-166 1-45 (89)
29 PRK00442 tatA twin arginine tr 99.5 1.1E-14 2.5E-19 117.1 4.0 45 122-166 1-45 (92)
30 PRK00720 tatA twin arginine tr 99.5 3.4E-14 7.5E-19 111.4 4.5 45 122-166 1-45 (78)
31 PRK00708 sec-independent trans 81.0 0.26 5.7E-06 45.4 -1.8 17 149-165 35-51 (209)
32 PF12732 YtxH: YtxH-like prote 75.0 6.6 0.00014 29.6 4.6 49 131-179 9-58 (74)
33 PF07423 DUF1510: Protein of u 66.6 1.6 3.4E-05 40.4 -0.5 41 108-150 5-45 (217)
34 PF06103 DUF948: Bacterial pro 64.5 27 0.00059 26.9 6.1 31 148-178 19-49 (90)
35 PRK14473 F0F1 ATP synthase sub 59.1 29 0.00063 29.5 5.9 12 120-131 1-12 (164)
36 PF01994 Trm56: tRNA ribose 2' 44.8 7.3 0.00016 33.5 0.0 39 113-151 23-65 (120)
37 PRK14472 F0F1 ATP synthase sub 43.3 75 0.0016 27.4 6.0 12 120-131 11-22 (175)
38 PRK13454 F0F1 ATP synthase sub 37.5 94 0.002 27.3 5.8 37 133-169 40-76 (181)
39 PRK12703 tRNA 2'-O-methylase; 36.3 25 0.00053 34.6 2.2 45 110-155 70-118 (339)
40 PF10746 Phage_holin_6: Phage 33.9 70 0.0015 25.1 3.9 39 118-162 24-62 (66)
41 COG1687 AzlD Predicted branche 32.0 48 0.001 28.1 2.9 20 139-158 25-44 (106)
42 PRK07352 F0F1 ATP synthase sub 31.7 1.7E+02 0.0037 25.2 6.3 11 119-129 11-21 (174)
43 PHA02047 phage lambda Rz1-like 30.8 1.8E+02 0.0039 24.6 6.0 39 130-168 5-44 (101)
44 PF13544 N_methyl_2: Type IV p 28.5 39 0.00084 22.2 1.5 17 124-140 15-31 (31)
45 KOG3726 Uncharacterized conser 28.0 80 0.0017 34.3 4.4 33 111-143 92-124 (717)
46 PF13730 HTH_36: Helix-turn-he 27.5 1.7E+02 0.0037 20.0 4.7 45 124-168 2-50 (55)
47 PRK13455 F0F1 ATP synthase sub 26.5 2.4E+02 0.0053 24.5 6.5 7 121-127 21-27 (184)
48 PF09680 Tiny_TM_bacill: Prote 26.3 37 0.0008 22.0 1.0 17 127-143 5-21 (24)
49 PRK01371 sec-independent trans 25.9 1.3E+02 0.0029 26.3 4.7 35 151-185 23-57 (137)
50 COG2165 PulG Type II secretory 25.2 1.6E+02 0.0035 22.8 4.7 32 124-156 9-40 (149)
51 TIGR02209 ftsL_broad cell divi 25.0 1.8E+02 0.0039 21.8 4.8 30 150-179 26-55 (85)
52 COG2426 Predicted membrane pro 24.4 82 0.0018 27.9 3.1 44 118-162 11-54 (142)
53 PRK00404 tatB sec-independent 24.4 2.7E+02 0.0059 24.6 6.3 37 143-179 26-64 (141)
54 PF06103 DUF948: Bacterial pro 23.9 2E+02 0.0043 22.1 4.9 29 144-172 22-50 (90)
55 PRK14861 tatA twin arginine tr 23.7 1.5E+02 0.0032 22.5 4.0 32 151-182 24-55 (61)
56 PF07466 DUF1517: Protein of u 23.6 1.2E+02 0.0025 29.2 4.3 18 125-142 65-82 (289)
57 PRK11677 hypothetical protein; 22.0 1.3E+02 0.0029 26.0 3.9 15 128-142 3-17 (134)
No 1
>PRK01770 sec-independent translocase; Provisional
Probab=99.89 E-value=1.7e-24 Score=189.34 Aligned_cols=101 Identities=21% Similarity=0.382 Sum_probs=87.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCCCCCCCCC
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~~~~n~~n 201 (285)
||||||+|||||+||+||||||+|||+++|++|+|+|+||++++ ++++++++|++++|+++.+++..+.++.+
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~-------~~k~e~~~E~~~~El~~~l~~~~~~~~~~ 73 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLAT-------TVQNELTQELKLQELQDSLKKVEKASLTN 73 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999999999999975 56788999999999999999888888888
Q ss_pred CCCCCCCCCccccccCcCCCCCccccccccChhHh
Q 023222 202 TMSTPPSVTSTEDSQTVADPNGAASANKAYTSEEY 236 (285)
Q Consensus 202 ~~~epls~s~~El~~t~~~~~~A~s~~~py~sed~ 236 (285)
+.++ +..+++++ ++.+.++.++|...+.
T Consensus 74 l~~e-l~~~~~e~------~~~~~~~~~~~~~~~~ 101 (171)
T PRK01770 74 LSPE-LKASVDEL------KQAAESMKRSYAANDP 101 (171)
T ss_pred hhHH-HHHHHHHH------HHHHhhhcccccccCc
Confidence 8876 77888887 5566666677765544
No 2
>PRK04654 sec-independent translocase; Provisional
Probab=99.83 E-value=6.5e-22 Score=178.09 Aligned_cols=84 Identities=29% Similarity=0.399 Sum_probs=72.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCCCCCCCCC
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~~~~n~~n 201 (285)
||||||+|||||+||+||||||+|||+++|++|+|+|+||++++ ++++++++|++++|+++.+++... .+.+
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~-------~vk~El~~El~~~ELrk~l~~~~~-~i~~ 72 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWD-------SVKQELERELEAEELKRSLQDVQA-SLRE 72 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999999999999998764 567788888899999988876643 3555
Q ss_pred CCCCCCCCCcccc
Q 023222 202 TMSTPPSVTSTED 214 (285)
Q Consensus 202 ~~~epls~s~~El 214 (285)
..++ ++.+++++
T Consensus 73 ~~~~-lk~~~~el 84 (214)
T PRK04654 73 AEDQ-LRNTQQQV 84 (214)
T ss_pred HHHH-HHHHHHHH
Confidence 5555 77777777
No 3
>PRK00404 tatB sec-independent translocase; Provisional
Probab=99.80 E-value=3.2e-20 Score=158.52 Aligned_cols=65 Identities=38% Similarity=0.673 Sum_probs=60.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcC
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN 193 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd 193 (285)
||||||+||+||+||+||||||+|||+++|++|+|+++||++++ ++++++++|++++|+|+.+++
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~-------~~k~ei~~E~~~~elr~~l~~ 65 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFN-------AIKQEVEREIGADEIRRQLHN 65 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998775 466788899999999998876
No 4
>PRK00708 sec-independent translocase; Provisional
Probab=99.78 E-value=1.5e-19 Score=162.57 Aligned_cols=74 Identities=34% Similarity=0.606 Sum_probs=62.4
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCCCCCCC
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNR 199 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~~~~n~ 199 (285)
||||||+|||||+||+||||||+|||+++|++|+|+++||++++++++ +|++++ ++.+++|+++.+++.++++.
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~---~~~e~~-~~~eldd~~k~~~~~~~ldp 74 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR---QFDEAL-REAELDDVRQTISDARSLNP 74 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh-hhhhHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999987763 444444 34578888888877655543
No 5
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=99.77 E-value=1.9e-19 Score=140.08 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=63.3
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCCCCCCCCCC
Q 023222 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT 202 (285)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~~~~n~~n~ 202 (285)
|||||+||+||+||+||||||+|||+++|++|+++++||++++ +++++++++++.+|+++..++.++.+..|.
T Consensus 1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~-------~~~~~~~~e~~~~el~~~~~~~~~~~~~~~ 73 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMAS-------DVKNELDEELKAQELDEQLKKAQQLRFLNL 73 (80)
T ss_pred CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhH-------hHHHHHHHHhchHhHHHHHHHHHHHhccCc
Confidence 8999999999999999999999999999999999999999986 456778888889999888776655544443
No 6
>PRK01919 tatB sec-independent translocase; Provisional
Probab=99.75 E-value=6.7e-19 Score=154.14 Aligned_cols=64 Identities=36% Similarity=0.581 Sum_probs=58.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhc
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQ 192 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lq 192 (285)
||||||+||+||+|||||||||+|||+++|++|+++++||++++ ++++++++|++++|+++..+
T Consensus 1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~-------d~K~ev~~E~e~dElrk~~~ 64 (169)
T PRK01919 1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYIN-------DVKAEVSREIELDELRKMKT 64 (169)
T ss_pred CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 46677888888888877544
No 7
>PRK04098 sec-independent translocase; Provisional
Probab=99.74 E-value=1.3e-18 Score=150.95 Aligned_cols=66 Identities=36% Similarity=0.598 Sum_probs=59.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCC
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~ 194 (285)
||||||+||+||+|||||||||+|||+++|++|+|+|+||+++++ +++++++|++++|+++..++.
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~-------~k~~l~~Ei~~~elk~e~~k~ 66 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTIND-------AKSTLDKEINIEEIKEEALKY 66 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864 567788888888998877654
No 8
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=99.74 E-value=2.1e-18 Score=141.80 Aligned_cols=64 Identities=34% Similarity=0.688 Sum_probs=53.2
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhc
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQ 192 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lq 192 (285)
||||||+||+||+||+||||||+|||+++|++|+++|+||++++++ +++++++++..++++..+
T Consensus 1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d~-------k~~i~~E~~~~e~~~~~~ 64 (108)
T PRK14858 1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDF-------KQSMQEESRTAEEKEKAE 64 (108)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999998754 445555555555544443
No 9
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=99.74 E-value=5.4e-18 Score=135.46 Aligned_cols=49 Identities=55% Similarity=0.949 Sum_probs=46.3
Q ss_pred ecccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
+.||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~ 49 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFE 49 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987654
No 10
>PRK00182 tatB sec-independent translocase; Provisional
Probab=99.74 E-value=2.9e-18 Score=149.10 Aligned_cols=68 Identities=22% Similarity=0.420 Sum_probs=56.8
Q ss_pred cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCC
Q 023222 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (285)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~ 194 (285)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++|+. .+++|+++.+++.
T Consensus 1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k---~el~~Elg--~e~~elrk~l~~l 69 (160)
T PRK00182 1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAK---QQLDGDFG--EEFDEFRKPLNQI 69 (160)
T ss_pred CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hHHHHHHHHHHHH
Confidence 78 599999999999999999999999999999999999999987654 23444443 2478999887754
No 11
>PRK03100 sec-independent translocase; Provisional
Probab=99.74 E-value=1.6e-18 Score=147.31 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=58.7
Q ss_pred cc-CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCccccchhhcCCCC
Q 023222 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNN 196 (285)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELerEieldELrk~lqd~~~ 196 (285)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++|+. .+++|+++.+++.++
T Consensus 1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~---~~~~~elg--~e~~dlrk~l~el~~ 71 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGAT---SQLREELG--PEFDDLRKPLGELQK 71 (136)
T ss_pred CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh--hhHHHHHHHHHHHHH
Confidence 78 599999999999999999999999999999999999999988765 34555554 457899887665544
No 12
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=99.72 E-value=8.2e-18 Score=133.33 Aligned_cols=47 Identities=51% Similarity=0.898 Sum_probs=44.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
||+||||||+||+||+||||||+|||+++|++|+++|+||+++++.+
T Consensus 1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~ 47 (94)
T COG1826 1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVK 47 (94)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhH
Confidence 88999999999999999999999999999999999999999987544
No 13
>PRK01371 sec-independent translocase; Provisional
Probab=99.71 E-value=2.3e-17 Score=140.44 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~efK~ELer 180 (285)
||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++|++.
T Consensus 1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak---~~i~~Elg~ 56 (137)
T PRK01371 1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNAR---NDLRSELGP 56 (137)
T ss_pred CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc
Confidence 89999999999999999999999999999999999999999998765 456666653
No 14
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=99.67 E-value=9.9e-17 Score=120.09 Aligned_cols=47 Identities=47% Similarity=0.815 Sum_probs=44.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
|+||||+|++||++|+||||||+|||+++|++|+++|+||+++++++
T Consensus 2 ~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~ 48 (61)
T PRK14861 2 FSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELT 48 (61)
T ss_pred CCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999987665
No 15
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=99.66 E-value=6e-17 Score=122.14 Aligned_cols=46 Identities=41% Similarity=0.799 Sum_probs=44.0
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|||||++||+||++|+||||||+|||+++|++|+++|+||+++++.
T Consensus 1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~~ 46 (63)
T PRK14859 1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEK 46 (63)
T ss_pred CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999988653
No 16
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=99.65 E-value=7.2e-17 Score=122.11 Aligned_cols=45 Identities=44% Similarity=0.840 Sum_probs=43.5
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
||||||+||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus 1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE 45 (64)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999999999999999999998765
No 17
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=99.62 E-value=3.6e-16 Score=125.75 Aligned_cols=47 Identities=36% Similarity=0.646 Sum_probs=44.3
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
|||||++||+||++|+||||||+|||+++|+||+++|+||+.+++++
T Consensus 1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~ 47 (92)
T PRK00575 1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQ 47 (92)
T ss_pred CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999876543
No 18
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=99.61 E-value=7.8e-16 Score=111.76 Aligned_cols=45 Identities=56% Similarity=0.928 Sum_probs=40.4
Q ss_pred CChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhh
Q 023222 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (285)
Q Consensus 125 IG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd 169 (285)
||++||+||++|+||||||+|||+++|++|+++|+||++.+++++
T Consensus 1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~ 45 (53)
T PF02416_consen 1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE 45 (53)
T ss_dssp S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 699999999999999999999999999999999999999877653
No 19
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=99.60 E-value=7e-16 Score=117.66 Aligned_cols=46 Identities=22% Similarity=0.505 Sum_probs=43.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|||||+|||+||++|+||||||+|||+++|++|+++|.||+.+++.
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~ 46 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDD 46 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999887654
No 20
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=99.60 E-value=8.7e-16 Score=109.56 Aligned_cols=45 Identities=44% Similarity=0.805 Sum_probs=42.3
Q ss_pred CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
|||++|++||++|+|+||||+|||+++|++|+++|+||+++++.+
T Consensus 1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~ 45 (47)
T TIGR01411 1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE 45 (47)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999987643
No 21
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=99.59 E-value=1e-15 Score=118.76 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=43.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|||||+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~ 46 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADD 46 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999987654
No 22
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=99.56 E-value=4.9e-15 Score=117.52 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=43.8
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhh
Q 023222 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (285)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd 169 (285)
+||||+||+||++|+||||||+|||+++|++|+++|+||+.++++++
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~ 47 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 37999999999999999999999999999999999999999877654
No 23
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=99.55 E-value=3.5e-15 Score=115.57 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=43.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~ 46 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEG 46 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999999999887654
No 24
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=99.55 E-value=3.2e-15 Score=117.80 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=43.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|||+|+|||+||+||+||||||+|||+++|.+|+++|+||+.+++.
T Consensus 1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~~ 46 (81)
T PRK04598 1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSEE 46 (81)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999999887653
No 25
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=99.54 E-value=5e-15 Score=107.79 Aligned_cols=43 Identities=26% Similarity=0.575 Sum_probs=41.1
Q ss_pred CCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
|||++||+||++|+||||||+|||+++|++|+++|+||+.+++
T Consensus 2 gig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 2 GMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKD 44 (51)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999999988764
No 26
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=99.54 E-value=3.7e-15 Score=116.14 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=43.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ei 167 (285)
|+++|+|||+||++|+||||||+|||+++|++|++++.||+.+++.
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~ 46 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDD 46 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999887653
No 27
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=99.53 E-value=4.1e-15 Score=118.14 Aligned_cols=45 Identities=29% Similarity=0.669 Sum_probs=42.9
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
|||||+|||+||++|+||+|||+|||+++|++|+.+|+||+.+++
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e 45 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRN 45 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999987654
No 28
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=99.53 E-value=7.5e-15 Score=117.56 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=42.6
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
|||+|+|||+||+||+||||||+|||+++|.||+++|+||+.+++
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e 45 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSD 45 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 889999999999999999999999999999999999999987653
No 29
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=99.50 E-value=1.1e-14 Score=117.09 Aligned_cols=45 Identities=29% Similarity=0.478 Sum_probs=42.8
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
|+++|+|||+||++|+||||||+|||+++|.||+++|+||+.+++
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e 45 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNE 45 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999988754
No 30
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=99.47 E-value=3.4e-14 Score=111.37 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=42.9
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
|+|+|+|||+||++|+||+|||+|||+++|++|++++.||+.+++
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~ 45 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMAD 45 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 889999999999999999999999999999999999999987754
No 31
>PRK00708 sec-independent translocase; Provisional
Probab=81.01 E-value=0.26 Score=45.38 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023222 149 VARNLGKTLRAFQPTIR 165 (285)
Q Consensus 149 laRsLGK~IRefR~~~~ 165 (285)
.+|.+-+++++||+.++
T Consensus 35 ~v~k~R~~a~e~r~~~~ 51 (209)
T PRK00708 35 MTARMRKMAGEFRRQFD 51 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444443
No 32
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=74.95 E-value=6.6 Score=29.62 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHH
Q 023222 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSRE-FKSTLE 179 (285)
Q Consensus 131 LVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd~s~e-fK~ELe 179 (285)
.++++++-++|-|+.=.++-+.|......++..+.++.+...+ +++..+
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 58 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAE 58 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999888776554333 444443
No 33
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=66.61 E-value=1.6 Score=40.39 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred hhhhccccceeeecccCCChhHHHHHHhhhhheeCCccHHHHH
Q 023222 108 EKKRRCKRGVFYASLFGVGAPEALVIGVVALLVFGPKGLAEVA 150 (285)
Q Consensus 108 ~~k~r~~~~~v~~~MFgIG~~ELLVIlVVALLVfGPkKLPela 150 (285)
.|.+|+|.+.+++.+++|- =||||+|.+-||||-..=|...
T Consensus 5 ~r~KrRK~N~iLNiaI~IV--~lLIiiva~~lf~~~~~~~~~~ 45 (217)
T PF07423_consen 5 QRQKRRKTNKILNIAIGIV--SLLIIIVAYQLFFGGDDSPAAS 45 (217)
T ss_pred HHHHhhhhhhhHHHHHHHH--HHHHHHHhhhheecCCCchhhh
Confidence 3433445455777766554 3677777777888665544433
No 34
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.50 E-value=27 Score=26.89 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023222 148 EVARNLGKTLRAFQPTIRELQDVSREFKSTL 178 (285)
Q Consensus 148 elaRsLGK~IRefR~~~~eiqd~s~efK~EL 178 (285)
...+.+++.++++++.++.+++..+...+|.
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666666666666666555444444443
No 35
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=59.06 E-value=29 Score=29.47 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=8.7
Q ss_pred ecccCCChhHHH
Q 023222 120 ASLFGVGAPEAL 131 (285)
Q Consensus 120 ~~MFgIG~~ELL 131 (285)
+.|||+.|+-++
T Consensus 1 ~~~~~~~~~~~~ 12 (164)
T PRK14473 1 MEKLGINLGLLI 12 (164)
T ss_pred CCcccCcHHHHH
Confidence 468999877654
No 36
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=44.80 E-value=7.3 Score=33.51 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=24.2
Q ss_pred cccceeeecccCCChhHHHHHHh----hhhheeCCccHHHHHH
Q 023222 113 CKRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVAR 151 (285)
Q Consensus 113 ~~~~~v~~~MFgIG~~ELLVIlV----VALLVfGPkKLPelaR 151 (285)
..+.+||..|+|+.+.+.+=-+= =.|||+|.+|.|.-.-
T Consensus 23 ~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evY 65 (120)
T PF01994_consen 23 KGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVY 65 (120)
T ss_dssp -SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHH
T ss_pred cCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHH
Confidence 56889999999999998443322 2489999999996443
No 37
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=43.35 E-value=75 Score=27.41 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=7.9
Q ss_pred ecccCCChhHHH
Q 023222 120 ASLFGVGAPEAL 131 (285)
Q Consensus 120 ~~MFgIG~~ELL 131 (285)
.+|||+.++.++
T Consensus 11 ~~~~~~~~~~~~ 22 (175)
T PRK14472 11 GGLLSPNPGLIF 22 (175)
T ss_pred CCccCCCHHHHH
Confidence 458888865553
No 38
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=37.54 E-value=94 Score=27.30 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHhh
Q 023222 133 IGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (285)
Q Consensus 133 IlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiqd 169 (285)
+++|.++|++-=-+|.+.+.+-+--..+++..+++++
T Consensus 40 ~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~ 76 (181)
T PRK13454 40 TLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEE 76 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444334677777777666666666655543
No 39
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=36.34 E-value=25 Score=34.62 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=34.9
Q ss_pred hhccccceeeecccCCChhHHHHHHh----hhhheeCCccHHHHHHHHHH
Q 023222 110 KRRCKRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVARNLGK 155 (285)
Q Consensus 110 k~r~~~~~v~~~MFgIG~~ELLVIlV----VALLVfGPkKLPelaRsLGK 155 (285)
|+| .+.+||..|+|+-+.+.+--+- =.|||+|.+|.|.-+-.++-
T Consensus 70 ~~~-~g~vvhltmyg~~~~~~~~~i~~~~~~~~~vvg~~kvp~~~y~~ad 118 (339)
T PRK12703 70 KKF-HGIRVHLTMYGRPIEDVIDEIRESGKDVMVLVGSEKVPIEAYEIAD 118 (339)
T ss_pred Hhc-CCEEEEEecCCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhcc
Confidence 444 5799999999999998776554 36899999999976655443
No 40
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=33.91 E-value=70 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred eeecccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHH
Q 023222 118 FYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (285)
Q Consensus 118 v~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~ 162 (285)
+...|+|+++.|++.|+-++..|+ .++-.+-+++++-|+
T Consensus 24 ~a~~f~GLslneWfyiati~Ytvl------Qig~~v~k~v~~~kr 62 (66)
T PF10746_consen 24 VARYFWGLSLNEWFYIATIAYTVL------QIGYLVWKKVRDWKR 62 (66)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 334568999999999999998765 344444455544443
No 41
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=32.04 E-value=48 Score=28.10 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.2
Q ss_pred heeCCccHHHHHHHHHHHHH
Q 023222 139 LVFGPKGLAEVARNLGKTLR 158 (285)
Q Consensus 139 LVfGPkKLPelaRsLGK~IR 158 (285)
++|++.|.|++.+.+||++-
T Consensus 25 ~if~~~~ppq~v~~lgk~lP 44 (106)
T COG1687 25 LIFKSGRPPQFVGYLGKVLP 44 (106)
T ss_pred HhcCCCCchHHHHHHHHhcC
Confidence 68999999999999999873
No 42
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.69 E-value=1.7e+02 Score=25.23 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=6.6
Q ss_pred eecccCCChhH
Q 023222 119 YASLFGVGAPE 129 (285)
Q Consensus 119 ~~~MFgIG~~E 129 (285)
+.+|||+.++-
T Consensus 11 ~~~~~~~~~~~ 21 (174)
T PRK07352 11 AEGGFGLNLNL 21 (174)
T ss_pred ccCCCCCchhH
Confidence 35677766643
No 43
>PHA02047 phage lambda Rz1-like protein
Probab=30.83 E-value=1.8e+02 Score=24.61 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=23.6
Q ss_pred HHHHHhhhhheeCCccHHHH-HHHHHHHHHHHHHHHHHHh
Q 023222 130 ALVIGVVALLVFGPKGLAEV-ARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 130 LLVIlVVALLVfGPkKLPel-aRsLGK~IRefR~~~~eiq 168 (285)
+++|++++.+.+|..-.-.. -|.+|..=++.++..+.++
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qLE 44 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARLE 44 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667775544443 5666766777776665543
No 44
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=28.53 E-value=39 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=11.4
Q ss_pred CCChhHHHHHHhhhhhe
Q 023222 124 GVGAPEALVIGVVALLV 140 (285)
Q Consensus 124 gIG~~ELLVIlVVALLV 140 (285)
|+..-|++|.++|..++
T Consensus 15 GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 15 GFTLIELLVAMAILAIL 31 (31)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHC
Confidence 67889999988887664
No 45
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.99 E-value=80 Score=34.27 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=29.0
Q ss_pred hccccceeeecccCCChhHHHHHHhhhhheeCC
Q 023222 111 RRCKRGVFYASLFGVGAPEALVIGVVALLVFGP 143 (285)
Q Consensus 111 ~r~~~~~v~~~MFgIG~~ELLVIlVVALLVfGP 143 (285)
=||...-+...+||-+..-++.+++.+++++||
T Consensus 92 vr~~~llllp~~~gk~grt~l~v~a~a~l~~GP 124 (717)
T KOG3726|consen 92 VRAAKLLLLPEAFGKSGRTILLVFAFATLIFGP 124 (717)
T ss_pred HHHHHHHHhHHHHccCCchhhHHHHHHHHHhCc
Confidence 366777788899999999999999999999999
No 46
>PF13730 HTH_36: Helix-turn-helix domain
Probab=27.54 E-value=1.7e+02 Score=20.01 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCChhHHHHHHhhhhheeCCc----cHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 124 GVGAPEALVIGVVALLVFGPK----GLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPk----KLPelaRsLGK~IRefR~~~~eiq 168 (285)
++++.|.+|.+.+.-..-+.. -...++..+|-..+.+++.+++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~ 50 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELE 50 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 577888888888777763333 367889999988888888877654
No 47
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=26.47 E-value=2.4e+02 Score=24.46 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.7
Q ss_pred cccCCCh
Q 023222 121 SLFGVGA 127 (285)
Q Consensus 121 ~MFgIG~ 127 (285)
+||++.+
T Consensus 21 ~~~~~~~ 27 (184)
T PRK13455 21 PFFSLSN 27 (184)
T ss_pred CCCCCcc
Confidence 4665543
No 48
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.26 E-value=37 Score=22.01 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.5
Q ss_pred hhHHHHHHhhhhheeCC
Q 023222 127 APEALVIGVVALLVFGP 143 (285)
Q Consensus 127 ~~ELLVIlVVALLVfGP 143 (285)
..-++++++|.|+++|-
T Consensus 5 ~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGA 21 (24)
T ss_pred cchhHHHHHHHHHHhcc
Confidence 34577888888888874
No 49
>PRK01371 sec-independent translocase; Provisional
Probab=25.90 E-value=1.3e+02 Score=26.34 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCcc
Q 023222 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLD 185 (285)
Q Consensus 151 RsLGK~IRefR~~~~eiqd~s~efK~ELerEield 185 (285)
+.|=+.+|.+.++++++++..+++++++..|++.+
T Consensus 23 eKLP~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~e 57 (137)
T PRK01371 23 DKLPKAARDAGRTLRQLREMANNARNDLRSELGPE 57 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 66677777777888888888889999999888854
No 50
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.24 E-value=1.6e+02 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=20.3
Q ss_pred CCChhHHHHHHhhhhheeCCccHHHHHHHHHHH
Q 023222 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKT 156 (285)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~ 156 (285)
|+..-|++|+++|+-|+.. -=+|.+.+...+.
T Consensus 9 GFTLiElLVvl~Iigil~~-~~~p~~~~~~~~~ 40 (149)
T COG2165 9 GFTLIELLVVLAIIGILAA-LALPSLQGSIDKA 40 (149)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 6788898888776665533 3355555555544
No 51
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.01 E-value=1.8e+02 Score=21.79 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023222 150 ARNLGKTLRAFQPTIRELQDVSREFKSTLE 179 (285)
Q Consensus 150 aRsLGK~IRefR~~~~eiqd~s~efK~ELe 179 (285)
.+.+-.-+...+....+.+...++++.|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 52
>COG2426 Predicted membrane protein [Function unknown]
Probab=24.43 E-value=82 Score=27.93 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=37.1
Q ss_pred eeecccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHH
Q 023222 118 FYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (285)
Q Consensus 118 v~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~ 162 (285)
...--+|++++|-+...+++++++++ -||.+.+.+-+++-+++.
T Consensus 11 ~~gl~~G~~~~Eal~~silGvL~l~~-lL~~~l~~id~im~kl~~ 54 (142)
T COG2426 11 PLGLALGLSPLEALLLSILGVLPLSL-LLPLLLDPIDRIMLKLKW 54 (142)
T ss_pred hhHHHhCCCHHHHHHHHHHHHhhHHH-HHHHHHhHHHHHHHHHhh
Confidence 34445799999999999999888886 489999999999988876
No 53
>PRK00404 tatB sec-independent translocase; Provisional
Probab=24.40 E-value=2.7e+02 Score=24.61 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=26.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 023222 143 PKGLAEVARNLGKTLRAFQPTIRELQDV--SREFKSTLE 179 (285)
Q Consensus 143 PkKLPelaRsLGK~IRefR~~~~eiqd~--s~efK~ELe 179 (285)
|+=.-.+++.+|++-|.|++..+++.+. .+++++++.
T Consensus 26 P~laR~lG~~i~~~rr~~~~~k~ei~~E~~~~elr~~l~ 64 (141)
T PRK00404 26 PGAARTAGLWIGRLKRSFNAIKQEVEREIGADEIRRQLH 64 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4556778899999999999988887763 345555554
No 54
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.94 E-value=2e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023222 144 KGLAEVARNLGKTLRAFQPTIRELQDVSR 172 (285)
Q Consensus 144 kKLPelaRsLGK~IRefR~~~~eiqd~s~ 172 (285)
.+|-+..+.+-+.++.+++-+..+.+..+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666666666666655544333
No 55
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=23.71 E-value=1.5e+02 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 023222 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREI 182 (285)
Q Consensus 151 RsLGK~IRefR~~~~eiqd~s~efK~ELerEi 182 (285)
+.+-+..|.+-++++++++..++++++.+++.
T Consensus 24 ~kLP~l~r~~G~~~~~fk~~~~~~~~~~~~~~ 55 (61)
T PRK14861 24 KKLPELGKALGKTLREFKKATKELTDDDFQEK 55 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 55666666666777777776677776665443
No 56
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=23.55 E-value=1.2e+02 Score=29.16 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=10.8
Q ss_pred CChhHHHHHHhhhhheeC
Q 023222 125 VGAPEALVIGVVALLVFG 142 (285)
Q Consensus 125 IG~~ELLVIlVVALLVfG 142 (285)
+|+.-++|++.|+.++|+
T Consensus 65 ~gl~~iLIl~~Ia~~vv~ 82 (289)
T PF07466_consen 65 GGLFDILILFGIAFFVVR 82 (289)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455666666666666553
No 57
>PRK11677 hypothetical protein; Provisional
Probab=21.98 E-value=1.3e+02 Score=26.03 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=9.6
Q ss_pred hHHHHHHhhhhheeC
Q 023222 128 PEALVIGVVALLVFG 142 (285)
Q Consensus 128 ~ELLVIlVVALLVfG 142 (285)
|.+.+|++|+-+|+|
T Consensus 3 W~~a~i~livG~iiG 17 (134)
T PRK11677 3 WEYALIGLVVGIIIG 17 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666666
Done!