Query 023222
Match_columns 285
No_of_seqs 221 out of 1264
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l16_A SEC-independent protein 99.8 2.2E-19 7.4E-24 138.7 5.4 48 121-168 1-48 (78)
2 2yy8_A ATRM56, UPF0106 protein 34.4 13 0.00044 33.2 1.2 44 109-153 70-120 (201)
3 2cqq_A RSGI RUH-037, DNAJ homo 29.6 32 0.0011 25.4 2.5 34 133-166 18-54 (72)
4 2o3a_A UPF0106 protein AF_0751 27.8 14 0.00048 32.4 0.3 46 107-153 69-117 (178)
5 1gp7_A Phospholipase A2; snake 21.7 27 0.00094 29.1 0.9 34 127-160 3-36 (151)
6 2gxg_A 146AA long hypothetical 16.7 1.2E+02 0.0041 22.4 3.4 41 122-165 32-72 (146)
7 2f95_B Sensory rhodopsin II tr 14.9 56 0.0019 24.5 1.2 19 149-167 79-97 (163)
8 2cjj_A Radialis; plant develop 13.2 1.3E+02 0.0046 23.1 2.9 34 134-167 19-56 (93)
9 3vjz_A DMP19, putative unchara 11.5 2.4E+02 0.0081 24.3 4.2 40 127-166 72-113 (166)
10 3oop_A LIN2960 protein; protei 10.5 3E+02 0.01 20.3 4.1 41 123-165 33-73 (143)
No 1
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=99.77 E-value=2.2e-19 Score=138.70 Aligned_cols=48 Identities=35% Similarity=0.679 Sum_probs=45.4
Q ss_pred cccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 023222 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (285)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~eiq 168 (285)
+|||||++||+||+||+||||||+|||+++|++|+++|+||+++++++
T Consensus 1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~ 48 (78)
T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLV 48 (78)
T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 489999999999999999999999999999999999999999987654
No 2
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=34.35 E-value=13 Score=33.22 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=33.5
Q ss_pred hhhccccceeeecccCCChhHHHHHHh-h------hhheeCCccHHHHHHHH
Q 023222 109 KKRRCKRGVFYASLFGVGAPEALVIGV-V------ALLVFGPKGLAEVARNL 153 (285)
Q Consensus 109 ~k~r~~~~~v~~~MFgIG~~ELLVIlV-V------ALLVfGPkKLPelaRsL 153 (285)
=|+| .+.+||..|+|+-+.+.+=-+- . .|||+|.+|.|.-.-.+
T Consensus 70 ik~w-gG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iLVVVGaeKVP~evYel 120 (201)
T 2yy8_A 70 MKEF-TGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYEL 120 (201)
T ss_dssp HHHC-CSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH
T ss_pred HHhc-CCEEEEEecCCCchHHHHHHHHhhcccCCCEEEEECCCcCCHHHHhh
Confidence 3445 7889999999999988764443 1 68999999999765444
No 3
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.60 E-value=32 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=26.1
Q ss_pred HHhhhhheeC---CccHHHHHHHHHHHHHHHHHHHHH
Q 023222 133 IGVVALLVFG---PKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 133 IlVVALLVfG---PkKLPelaRsLGK~IRefR~~~~e 166 (285)
++.=+|..|+ |+|.-.+|+.+||...++++-...
T Consensus 18 ~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 18 QLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445566777 789999999999888888876543
No 4
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=27.81 E-value=14 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=29.4
Q ss_pred hhhhhccccceeeecccCCChhHHHHHHh---hhhheeCCccHHHHHHHH
Q 023222 107 LEKKRRCKRGVFYASLFGVGAPEALVIGV---VALLVFGPKGLAEVARNL 153 (285)
Q Consensus 107 ~~~k~r~~~~~v~~~MFgIG~~ELLVIlV---VALLVfGPkKLPelaRsL 153 (285)
..=|+| .+.+||..|+|+.+.+.+=-+- =.|||+|.+|.|.-.-.+
T Consensus 69 ~~i~~w-~G~VVHLTMYG~~i~dvi~~Ir~~~~iLvVVGaeKVP~evYel 117 (178)
T 2o3a_A 69 KLLREF-DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYEL 117 (178)
T ss_dssp HHHHHC-CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHHHH
T ss_pred HHHHHc-CCEEEEEecCCCchHHHHHHhhcCCCEEEEECCCcCCHHHHhh
Confidence 333445 7889999999999987654332 368999999999654433
No 5
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=21.70 E-value=27 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=4.5
Q ss_pred hhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHH
Q 023222 127 APEALVIGVVALLVFGPKGLAEVARNLGKTLRAF 160 (285)
Q Consensus 127 ~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRef 160 (285)
+.+|||+++|.+.+||...+|..-|.+-++-.-+
T Consensus 3 ~~~ll~~~~v~v~ll~~~~~~~~~~~l~qf~~MI 36 (151)
T 1gp7_A 3 PAHLLVLSAVCVSLLGASSIPPQPLHLIQFGNMI 36 (151)
T ss_dssp -------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHH
Confidence 5678999999999999888888777665544433
No 6
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=16.65 E-value=1.2e+02 Score=22.40 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred ccCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHH
Q 023222 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (285)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ 165 (285)
-+|++..|+.|+.++. -||-..-++++.+|-.-..+.+.++
T Consensus 32 ~~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp TTTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHH
Confidence 4688999998888776 7888899999988765555554443
No 7
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=14.89 E-value=56 Score=24.55 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023222 149 VARNLGKTLRAFQPTIREL 167 (285)
Q Consensus 149 laRsLGK~IRefR~~~~ei 167 (285)
+.|.+.+-++++.+.++++
T Consensus 79 ~~~~i~~pl~~l~~~~~~i 97 (163)
T 2f95_B 79 LGGDTAASLSTLAAKASRM 97 (163)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443
No 8
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=13.17 E-value=1.3e+02 Score=23.10 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=25.8
Q ss_pred HhhhhheeC---CccHHHHHHHH-HHHHHHHHHHHHHH
Q 023222 134 GVVALLVFG---PKGLAEVARNL-GKTLRAFQPTIREL 167 (285)
Q Consensus 134 lVVALLVfG---PkKLPelaRsL-GK~IRefR~~~~ei 167 (285)
+.-+|..+| |.|.-.+|+.| ||...++|+-...+
T Consensus 19 L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 19 FERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334455677 89999999999 58888888776654
No 9
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=11.53 E-value=2.4e+02 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=31.1
Q ss_pred hhHHHHH--HhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 127 APEALVI--GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 127 ~~ELLVI--lVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
..+.++- +.-+|=.+|-+++|++++..-+++.+-+..+..
T Consensus 72 yG~~if~Np~akalr~wG~~~l~kli~kA~klY~~~~~~ie~ 113 (166)
T 3vjz_A 72 YGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQHGKTIET 113 (166)
T ss_dssp CHHHHHTSSHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHhChHHHHHHHhCchhHHHHHHHHHHHHHHhhhHHHH
Confidence 3444443 567888899999999999999999888876654
No 10
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=10.54 E-value=3e+02 Score=20.30 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=31.1
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHH
Q 023222 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (285)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ 165 (285)
+|++..|+.|+.++.-- ||-..-++++.+|-.-..+-+.++
T Consensus 33 ~~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp SSSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 68999999888777654 888999999988866555555543
Done!