Query 023222
Match_columns 285
No_of_seqs 221 out of 1264
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 03:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023222.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023222hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o3aa1 c.116.1.8 (A:1-167) Un 24.9 7.9 0.00058 31.7 0.3 38 114-151 73-113 (167)
2 d1rp3a1 a.4.13.1 (A:87-163) Si 20.9 27 0.0019 23.4 2.4 29 163-191 8-36 (77)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 20.8 96 0.007 21.1 5.6 29 126-155 2-30 (158)
4 d1l0oc_ a.4.13.2 (C:) SigmaF { 15.8 40 0.0029 21.8 2.3 20 172-191 22-41 (57)
5 d2axti1 f.23.37.1 (I:1-35) Pho 10.6 30 0.0022 21.6 0.2 13 130-142 10-22 (35)
6 d1zj8a4 d.134.1.1 (A:162-326) 9.1 2.1E+02 0.015 21.5 5.0 24 137-160 96-119 (165)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 7.9 79 0.0058 19.7 1.5 14 127-140 18-31 (37)
8 d1twfk_ d.74.3.2 (K:) RPB11 {B 7.7 2.1E+02 0.015 20.5 4.2 16 171-186 98-113 (114)
9 d1lnwa_ a.4.5.28 (A:) MexR rep 7.5 1.8E+02 0.013 20.4 3.7 41 123-165 32-72 (141)
10 d2a61a1 a.4.5.28 (A:5-143) Tra 6.9 2.1E+02 0.015 19.9 3.8 42 123-166 26-67 (139)
No 1
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.94 E-value=7.9 Score=31.66 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=25.3
Q ss_pred ccceeeecccCCChhHHHHHHhh---hhheeCCccHHHHHH
Q 023222 114 KRGVFYASLFGVGAPEALVIGVV---ALLVFGPKGLAEVAR 151 (285)
Q Consensus 114 ~~~~v~~~MFgIG~~ELLVIlVV---ALLVfGPkKLPelaR 151 (285)
.+.+||..|+|+.+.+.+==+=- .|||+|.+|.|.=+-
T Consensus 73 ~G~vVHLTMYG~~~~~~~~~Ir~~~~ilvVVGaeKVP~evy 113 (167)
T d2o3aa1 73 DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVY 113 (167)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHH
T ss_pred CCEEEEeecCCCchHHHhhhcccCCCEEEEECCccCCHHHH
Confidence 68899999999999985433211 689999999996443
No 2
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=20.86 E-value=27 Score=23.41 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHHHHhhhHHHHHHHHHhhcCccccchhh
Q 023222 163 TIRELQDVSREFKSTLEREIGLDDISTST 191 (285)
Q Consensus 163 ~~~eiqd~s~efK~ELerEieldELrk~l 191 (285)
.++.++.....+.++++++...+|+.+.+
T Consensus 8 ~~~ki~~a~~~L~~~lGR~Pt~~EiA~~l 36 (77)
T d1rp3a1 8 KERRIKEVVEKLKEKLGREPTDEEVAKEL 36 (77)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCHHHHHHHH
Confidence 33333344456667777777777776554
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=20.76 E-value=96 Score=21.06 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=17.7
Q ss_pred ChhHHHHHHhhhhheeCCccHHHHHHHHHH
Q 023222 126 GAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (285)
Q Consensus 126 G~~ELLVIlVVALLVfGPkKLPelaRsLGK 155 (285)
..-||+|+++|+-|+-+ =-+|.+.+.+-+
T Consensus 2 TLIELlVViaIIgILaa-ia~P~~~~~~~~ 30 (158)
T d2pila_ 2 TLIELMIVIAIVGILAA-VALPAYQDYTAR 30 (158)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45788877766554433 227877765554
No 4
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.80 E-value=40 Score=21.78 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=13.8
Q ss_pred HHHHHHHHhhcCccccchhh
Q 023222 172 REFKSTLEREIGLDDISTST 191 (285)
Q Consensus 172 ~efK~ELerEieldELrk~l 191 (285)
.++.++++++...+|+.+.+
T Consensus 22 ~~l~q~lgRePT~~EiA~~l 41 (57)
T d1l0oc_ 22 DELSKTRGRAPTVTEIADHL 41 (57)
T ss_dssp HHHHHHHTSCCBHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHH
Confidence 45567777877777776655
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.55 E-value=30 Score=21.63 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHHHhhhhheeC
Q 023222 130 ALVIGVVALLVFG 142 (285)
Q Consensus 130 LLVIlVVALLVfG 142 (285)
.+|++.|.|++||
T Consensus 10 ~vV~fFv~lFiFG 22 (35)
T d2axti1 10 IVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 4677788888887
No 6
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.12 E-value=2.1e+02 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.5
Q ss_pred hhheeCCccHHHHHHHHHHHHHHH
Q 023222 137 ALLVFGPKGLAEVARNLGKTLRAF 160 (285)
Q Consensus 137 ALLVfGPkKLPelaRsLGK~IRef 160 (285)
+..++-+++++.+++.+-+.++++
T Consensus 96 l~~~v~~e~v~~~v~ai~~~y~~~ 119 (165)
T d1zj8a4 96 VGAWVPLGEVPEVWAAVTSVFRDY 119 (165)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999865
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.85 E-value=79 Score=19.73 Aligned_cols=14 Identities=43% Similarity=0.349 Sum_probs=10.5
Q ss_pred hhHHHHHHhhhhhe
Q 023222 127 APEALVIGVVALLV 140 (285)
Q Consensus 127 ~~ELLVIlVVALLV 140 (285)
.|.+++|+|+++++
T Consensus 18 y~GlLlifvl~vLF 31 (37)
T d2axtl1 18 YLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37788888888764
No 8
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.71 E-value=2.1e+02 Score=20.54 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcCccc
Q 023222 171 SREFKSTLEREIGLDD 186 (285)
Q Consensus 171 s~efK~ELerEieldE 186 (285)
.+.+++++++|.++..
T Consensus 98 ~~~l~~~f~~e~~~~~ 113 (114)
T d1twfk_ 98 LGALKTNFETEWNLQT 113 (114)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3456666666666654
No 9
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.46 E-value=1.8e+02 Score=20.41 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=30.3
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHH
Q 023222 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (285)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~ 165 (285)
+||++.|+-|+.++. -.++-..-++++.++..-..+.+.++
T Consensus 32 ~~lt~~q~~vL~~l~--~~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 32 LDLTPPDVHVLKLID--EQRGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp CCCCHHHHHHHHHHH--SSTTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--HCCCCCHHHHHHHHCccHhHHHHHHH
Confidence 589999999998876 36666888888887766655555544
No 10
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=6.93 E-value=2.1e+02 Score=19.92 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.6
Q ss_pred cCCChhHHHHHHhhhhheeCCccHHHHHHHHHHHHHHHHHHHHH
Q 023222 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (285)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaRsLGK~IRefR~~~~e 166 (285)
+||+..++.++..|. .-||-..-++++.+|-.-..+-+.++.
T Consensus 26 ~glt~~q~~iL~~i~--~~~~~t~~~la~~l~i~~~tvs~~l~~ 67 (139)
T d2a61a1 26 FGITPAQFDILQKIY--FEGPKRPGELSVLLGVAKSTVTGLVKR 67 (139)
T ss_dssp HTCCHHHHHHHHHHH--HHCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HcCCCCHHHHHHHhCCCcccchHHHHH
Confidence 489999999998886 468889999999888766666555543
Done!