BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023223
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAQ|C Chain C, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|1GAW|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
pdb|1GAW|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Maize Leaf
Length = 314
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC L+ GD V+I+ +G+ + + P D T+++ ATG+GI+P RS +
Sbjct: 128 VKGVCSNFLCDLQPGDNVQITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
F K D + L+ G + Y+++F KE ++ +S+ N +G
Sbjct: 184 MFFEK-HDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
E Y+Q + K ++ T V +CG K M
Sbjct: 243 ERMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGM 277
>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
pdb|3VO1|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
Length = 314
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D T+++ ATG+GI+P RS +
Sbjct: 128 VKGVCSNFLCDLKPGAEVKITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
F +E D + L+ G + Y+ +K KE ++ +S+ N +G
Sbjct: 184 MF-FEEHEDYKYTGLAWLFLGVPTSDTLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284
E Y+Q + K ++ T V +CG K M + L+ +A
Sbjct: 243 EKMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMLDLAA 290
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 162 IQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--E 219
++ +E P +LI A G+G S RS++ + + D+ +Y+G R + + + +
Sbjct: 97 LRDDEERPMILI-AGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALS 155
Query: 220 WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEVC 275
+ G+++VPV+ QP+ W G TG V A + GT + + G+ +MA++
Sbjct: 156 LKHPGLQVVPVVEQPEAGWRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIA 209
Query: 276 Y-CFCLEFSA 284
FC E +A
Sbjct: 210 RDLFCSERNA 219
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ ATG+GI+P RS +
Sbjct: 124 VKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLATGTGIAPFRSFLWK 179
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
F +E D + L+ G + Y+ +K KE ++ +S+ N +G
Sbjct: 180 MF-LEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 238
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284
E Y+Q + + ++ T V +CG K M + L +A
Sbjct: 239 EKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAA 286
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 128 KSVAGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSL 186
++V G + LC L G D V+I+ +G+ + + P DE TV++ ATG+GI+P R+
Sbjct: 213 ETVYGVCSTYLCNLPVGTDDVKITGPVGK----EMLLPDDEDATVVMLATGTGIAPFRAF 268
Query: 187 IESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
+ F + + L +G + Y+D F++ + ++ +S+
Sbjct: 269 LWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTA 328
Query: 239 SGETGYVQAAFSR-AKKIF---NPQGTGVVLCGQKQM 271
G YVQ+ S A ++F T V +CG K M
Sbjct: 329 DGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGM 365
>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|B Chain B, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|C Chain C, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
pdb|2R6H|D Chain D, Crystal Structure Of The Domain Comprising The Nad Binding
And The Fad Binding Regions Of The Nadh:ubiquinone
Oxidoreductase, Na Translocating, F Subunit From
Porphyromonas Gingivalis
Length = 290
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
G ++ + LK GD V S G IQ D L G+G +P+R+ I F
Sbjct: 126 GISSSYIFSLKPGDKVXXSGPYGDF----HIQDTD--AEXLYIGGGAGXAPLRAQILHLF 179
Query: 192 SS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLS--QPDGNWSGETGYVQ 246
+ K V +YGAR+ + Y++ F+E E K LS QP+ NW+G G++
Sbjct: 180 RTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIH 239
>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
pdb|1SM4|B Chain B, Crystal Structure Analysis Of The Ferredoxin-Nadp+
Reductase From Paprika
Length = 296
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+ V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 108 EEVKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFL 163
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
F K D + L+ G + Y+++F++ + ++ +S+ N
Sbjct: 164 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNE 222
Query: 239 SGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAE 273
GE Y+Q ++ + + T V +CG K M +
Sbjct: 223 KGEKMYIQTRMAQYAEELWTLLKKDNTFVYMCGLKGMEQ 261
>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+
pdb|1QGA|B Chain B, Pea Fnr Y308w Mutant In Complex With Nadp+
Length = 308
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
F K
Sbjct: 178 MFFEKHED 185
>pdb|1QG0|A Chain A, Wild-type Pea Fnr
pdb|1QG0|B Chain B, Wild-type Pea Fnr
Length = 308
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
F K
Sbjct: 178 MFFEKHED 185
>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant
pdb|4AF6|B Chain B, Pea Fnr L268v Mutant
Length = 308
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
F K
Sbjct: 178 MFFEKHED 185
>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid
pdb|3MHP|B Chain B, Fnr-Recruitment To The Thylakoid
Length = 296
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 109 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 164
Query: 190 GFSSKERS 197
F K
Sbjct: 165 MFFEKHED 172
>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFY|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadp+
pdb|1QFZ|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadph
pdb|1QFZ|B Chain B, Pea Fnr Y308s Mutant In Complex With Nadph
Length = 308
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
F K
Sbjct: 178 MFFEKHED 185
>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant
pdb|4AF7|B Chain B, Pea Fnr C266m Mutant
Length = 308
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS +
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
F K
Sbjct: 178 MFFEKHED 185
>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
Length = 314
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+++ G + LC LK G V+++ +G+ + + P D T+++ TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
F K D + L+ G + Y+++F++ + ++ +S+ N
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
GE Y+Q ++ ++ T V +CG K M
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGM 277
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPLGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 260
>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
pdb|2XNC|B Chain B, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
Length = 315
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
G + LC LK G V+I+ +G+ + + P D TV++ TG+GI+P RS + F
Sbjct: 130 GVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWKMF 185
Query: 192 SSKERS 197
K
Sbjct: 186 FEKHED 191
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+++ G + LC LK G V+++ +G+ + + P D T+++ TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSK 194
F K
Sbjct: 182 WKMFFEK 188
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+++ G + LC LK G V+++ +G+ + + P D T+++ TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSK 194
F K
Sbjct: 182 WKMFFEK 188
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+++ G + LC LK G V+++ +G+ + + P D T+++ TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSK 194
F K
Sbjct: 182 WKMFFEK 188
>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
Ferredoxin-Nadp+ Reductase: Structure-Function
Relationship As Studied By Site-Directed Mutagenesis And
X- Ray Crystallography
Length = 314
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
+++ G + LC LK G V+++ +G+ + + P D T+++ TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSK 194
F K
Sbjct: 182 WKMFFEK 188
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPI----RSLI 187
G ++ + L GD +++ RG P+ + + A G+GI+P+ R++I
Sbjct: 85 GQMSQYIDHLNPGDFLQV-----RGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAII 139
Query: 188 ESGFSSKERSDVRLYYGARN----LKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETG 243
++ KE++ + L + N L R D K++ S K+ VL+ P W+G G
Sbjct: 140 KN---PKEKTIINLIFANVNEDDILLRTELDDMAKKY--SNFKVYYVLNNPPAGWTGGVG 194
Query: 244 YVQAAFSRAKKIFNPQGTG--VVLCGQKQMAE 273
+V A K+ F+P + V++CG M +
Sbjct: 195 FVSA--DMIKQHFSPPSSDIKVMMCGPPMMNK 224
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEE 268
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPRGMEE 268
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
+LV G + L LK GD V++ F +D + P E T+ + ATG+ I P
Sbjct: 66 YLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEV-PHCE--TLWMLATGTAIGPYL 122
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE---SSGVKIVPVLSQPD--GNWS 239
S++ G ++ L + AR ++Y +E E ++I V+S+ G+ +
Sbjct: 123 SILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLT 182
Query: 240 G------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
G E+G +++ N + + V+LCG QM
Sbjct: 183 GRIPALIESGELESTIGLP---MNKETSHVMLCGNPQM 217
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 260
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEE 268
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 268
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 260
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 269
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP--TVLIFATGSGISPIRSL 186
S G + LC K GD ++++ G+ + P+E P T ++ ATG+G++P R
Sbjct: 124 SKNGVCSNFLCNSKPGDKIQLTGPSGKIMLL-----PEEDPNATHIMIATGTGVAPFRGY 178
Query: 187 IESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGN 237
+ F ++ + R L+ G N + Y ++F + + LS+ N
Sbjct: 179 LRRMF-MEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKN 237
Query: 238 WSGETGYVQAAFSR-AKKIFN--PQGTGVVLCGQKQM 271
SG YVQ + +IF G + CG K M
Sbjct: 238 RSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGM 274
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP--TVLIFATGSGISPIRSL 186
S G + LC K GD ++++ G+ + P+E P T ++ ATG+G++P R
Sbjct: 124 SKNGVCSNFLCNSKPGDKIQLTGPSGKIMLL-----PEEDPNATHIMIATGTGVAPFRGY 178
Query: 187 IESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGN 237
+ F ++ + R L+ G N + Y ++F + + LS+ N
Sbjct: 179 LRRMF-MEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKN 237
Query: 238 WSGETGYVQAAFSR-AKKIFN--PQGTGVVLCGQKQM 271
SG YVQ + +IF G + CG K M
Sbjct: 238 RSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGM 274
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188
+V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 TVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYLW 167
Query: 189 SGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDG 236
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 RMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQK 227
Query: 237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 NPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 268
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + P D V++ ATG+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGKKMLL----PDDPEANVIMLATGTGIAPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 268
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP--TVLIFATGSGISPIRSL 186
S G + LC K GD ++++ G+ + P+E P T ++ ATG+G++P R
Sbjct: 129 SKNGVCSNFLCNSKPGDKIQLTGPSGKIMLL-----PEEDPNATHIMIATGTGVAPFRGY 183
Query: 187 IESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGN 237
+ F ++ + R L+ G N + Y ++F + + LS+ N
Sbjct: 184 LRRMF-MEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKN 242
Query: 238 WSGETGYVQAAFSR-AKKIFN--PQGTGVVLCGQKQM 271
SG YVQ + +IF G + CG K M
Sbjct: 243 RSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGM 279
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 260
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLEGMEE 260
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIESG 190
G + +C LK GD V ++ G+ F + P ++ ++F ATG+GI+P + E
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLL----PNTDFSGDIMFLATGTGIAPFIGMSEEL 187
Query: 191 FSSKE---RSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN-WSGETGY 244
K ++ L YGA + D K ES K++ +S+ + N + G Y
Sbjct: 188 LEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMY 247
Query: 245 ----VQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
V+ KKI N G + G K M +
Sbjct: 248 ISHRVREQAEAVKKILNGGGRFYICGGPKGMEK 280
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
V G + L LK GD V++ F +D + P E T+ + ATG+ I P S++
Sbjct: 90 VKGKLSPRLAALKPGDEVQVVSEAAGFFVLDEV-PHCE--TLWMLATGTAIGPYLSILRL 146
Query: 190 GFSSKERSDVRLYYGARNLKRMAYQDKFKEWE---SSGVKIVPVLSQPD--GNWSG---- 240
G ++ L + AR ++Y +E E ++I V+S+ G+ +G
Sbjct: 147 GKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGRIPA 206
Query: 241 --ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
E+G +++ N + + V+LCG QM
Sbjct: 207 LIESGELESTIGLP---MNKETSHVMLCGNPQM 236
>pdb|2QDX|A Chain A, P.Aeruginosa Fpr With Fad
pdb|3CRZ|A Chain A, Ferredoxin-Nadp Reductase
Length = 257
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
F +K G L LK+GD + +S+ D + P + + +TG+G++P
Sbjct: 66 FSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKH---LYLLSTGTGMAPFL 122
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQD----KFKEWESSGVKI------VPVLSQP 234
S+I+ + + V L +G R + +AY D E E G ++ P++++
Sbjct: 123 SVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTRE 182
Query: 235 DGNWSGETGYVQAAFSRAKKIF--------NPQGTGVVLCGQKQMAE----VCYCFCLEF 282
G Q R+ K+F NPQ ++CG M E V F L+
Sbjct: 183 PFRNQGR----QTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKI 238
Query: 283 S 283
S
Sbjct: 239 S 239
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLS 232
A G+G++P+ S++ ++ R+Y+G + Y D+ K E S + + +
Sbjct: 124 AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVW 183
Query: 233 QPDGNWSGETG 243
P G+W GE G
Sbjct: 184 HPSGDWEGEQG 194
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ ATG+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLATGTGIAPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ + T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNEKTHTYICGLRGMEE 269
>pdb|3FPK|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
pdb|3FPK|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
Length = 251
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
+LV G + L LK GD V++ F +D + PD T+ + ATG+ I P
Sbjct: 69 YLVTVPQGKLSPRLAALKPGDEVQVVSDASGFFVLDEV--PD-CETLWMLATGTAIGPYL 125
Query: 185 SLIESGFSSKERSDVRLYYGAR---NLKRMAYQDKFKEWESSGVKIVPVLSQPD--GNWS 239
S+++ G ++ L + AR +L + + ++ ++I V+S+ + G+ +
Sbjct: 126 SILQYGQDVARFKNLVLVHAARFAADLSYLPLMLELQQRYEGKLRIQTVVSRENVPGSLT 185
Query: 240 G------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
G E G ++ A + + + V+LCG QM
Sbjct: 186 GRVPALIENGELEKAVGLP---MDKETSHVMLCGNPQM 220
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ A G+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLAGGTGITPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPRGMEE 269
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ A G+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLAGGTGITPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGPRGMEE 269
>pdb|1A8P|A Chain A, Ferredoxin Reductase From Azotobacter Vinelandii
Length = 258
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 29/181 (16%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
F +K G L LK+GD + +S+ + P + + +TG+G++P
Sbjct: 67 FSIKVQNGPLTSRLQHLKEGDELMVSRKPTGTLVTSDLLPGKH---LYMLSTGTGLAPFM 123
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQ----------DKFKEWESSGVKIVPVLSQP 234
SLI+ + V L +G R + +AYQ + F E + P +++
Sbjct: 124 SLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRE 183
Query: 235 DGNWSGETGYVQAAFSRAKKIF--------NPQGTGVVLCGQKQM----AEVCYCFCLEF 282
+ G R+ K+F NPQ ++CG M EV F L+
Sbjct: 184 SFHNQGRL----TDLMRSGKLFEDIGLPPINPQDDRAMICGSPSMLDESCEVLDGFGLKI 239
Query: 283 S 283
S
Sbjct: 240 S 240
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ A G+GI+P+R+ +
Sbjct: 111 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLAGGTGITPMRTYL 166
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 167 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 226
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 227 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 268
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ A G+GI+P+R+ +
Sbjct: 103 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLAGGTGIAPMRTYL 158
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 159 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 218
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG + M E
Sbjct: 219 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGLRGMEE 260
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 20/162 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
++V G + L ++ G V+I+ +G+ + + P D V++ A G+GI+P+R+ +
Sbjct: 112 ETVYGVCSTYLTHIEPGSEVKITGPVGK----EMLLPDDPEANVIMLAGGTGITPMRTYL 167
Query: 188 ESGFSSKERSDVRLY---------YGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPD 235
F ER+ Y +G + Y+++ +E + ++ +S+
Sbjct: 168 WRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQ 227
Query: 236 GNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAE 273
N G Y+Q + ++ Q T +CG M E
Sbjct: 228 KNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEE 269
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 24/159 (15%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGR-GFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIES 189
G + + LK D + ++ G D IQ T IF ATG+GISP S ++
Sbjct: 136 GYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKN----TNFIFIATGTGISPYISFLKK 191
Query: 190 GF----------SSKERSDVRLYYGARNLKRMAYQDK---FKEWESSGVKIVPVLSQPDG 236
F +S + +YYG N + Y ++ F++ + + I V S
Sbjct: 192 LFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQ- 250
Query: 237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
N + YVQ + K +FN + +CG K +
Sbjct: 251 NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGHKSI 289
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGR-GFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIES 189
G + + LK D + ++ G D IQ T IF ATG+GISP S ++
Sbjct: 136 GYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKN----TNFIFIATGTGISPYISFLKK 191
Query: 190 GF----------SSKERSDVRLYYGARNLKRMAYQDK---FKEWESSGVKIVPVLSQPDG 236
F +S + +YYG N + Y ++ F++ + + I V S
Sbjct: 192 LFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQ- 250
Query: 237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
N + YVQ + K +FN + +CG+K +
Sbjct: 251 NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSI 289
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 24/159 (15%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGR-GFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIES 189
G + + LK D + ++ G D IQ T IF ATG+GISP S ++
Sbjct: 136 GYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKN----TNFIFIATGTGISPYISFLKK 191
Query: 190 GF----------SSKERSDVRLYYGARNLKRMAYQDK---FKEWESSGVKIVPVLSQPDG 236
F +S + +YYG N + Y ++ F++ + + I V S
Sbjct: 192 LFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQ- 250
Query: 237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
N + YVQ + K +FN + +CG K +
Sbjct: 251 NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGLKSI 289
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 173 IFATGSGISPIRSLIESGFSSK--ERSDVRLYYGARNLKRMAYQDKFKEWES---SGVKI 227
+ GSGI+P+ +I++ + + +++ L Y R + +D+ W + +K+
Sbjct: 141 MICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKV 200
Query: 228 VPVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
V+ Q P+ W G+V A R T + CG M +
Sbjct: 201 WYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQ 249
>pdb|4F7D|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4F7D|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4FK8|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
pdb|4FK8|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
Length = 271
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
F +K G L LK GD V I + D + P T+ + +TG+G++P
Sbjct: 82 FSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGK---TLWMLSTGTGLAPFM 138
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219
S+I + V L + R +AY D K
Sbjct: 139 SIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKH 173
>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
pdb|4DQK|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
Length = 391
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKER----SDVRLYYGARN-LKRMAYQDKFK 218
P D +++ G+G++P R +++ KE+ + LY+G R+ + YQ++ +
Sbjct: 234 PKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELE 293
Query: 219 EWESSGVKIVPVL-----SQPDGNWSGETGYVQAAFSR-AKKIFN--PQGTGVVLCGQ-K 269
+S G+ + +QP YVQ + KK+ QG +CG
Sbjct: 294 NAQSEGIITLHTAFSRMPNQPK-------TYVQHVMEQDGKKLIELLDQGAHFYICGDGS 346
Query: 270 QMA 272
QMA
Sbjct: 347 QMA 349
>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
pdb|4DQL|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
Length = 393
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKER----SDVRLYYGARN-LKRMAYQDKFK 218
P D +++ G+G++P R +++ KE+ + LY+G R+ + YQ++ +
Sbjct: 236 PKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELE 295
Query: 219 EWESSGVKIVPVL-----SQPDGNWSGETGYVQAAFSR-AKKIFN--PQGTGVVLCGQ-K 269
+S G+ + +QP YVQ + KK+ QG +CG
Sbjct: 296 NAQSEGIITLHTAFSRMPNQPK-------TYVQHVMEQDGKKLIELLDQGAHFYICGDGS 348
Query: 270 QMA 272
QMA
Sbjct: 349 QMA 351
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 171 VLIFATGSGISPIRSLI----------ESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW 220
V++ G+G++P R I + G ++ L+YG+RN YQD++ E+
Sbjct: 527 VIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEY 586
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 171 VLIFATGSGISPIRSLI----------ESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW 220
V++ G+G++P R I + G ++ L+YG+RN YQD++ E+
Sbjct: 527 VIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEY 586
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 16/147 (10%)
Query: 61 LAEISPAAESLFHVSIDISDA-PDIASSHTRAGQYLQLRVVDVGKPTFLAIXXXXXXXXX 119
LA + ++S I + D PDI H AGQY+ + + + +
Sbjct: 113 LARVENLSDSTITFDIQLDDGQPDI---HFLAGQYVNVTLPGTTETRSYSFSSQPGNRLT 169
Query: 120 XXXXEFLVKSV-AGSTAEVL-CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATG 177
F+V++V G +E L K GD + + G + D +P VL+ A G
Sbjct: 170 G----FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDVKRP------VLMLAGG 219
Query: 178 SGISPIRSLIESGFSSKERSDVRLYYG 204
+GI+P S+++ VRL +G
Sbjct: 220 TGIAPFLSMLQVLEQKGSEHPVRLVFG 246
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 210 RMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGV---VLC 266
+++ DK + G K V + + DG +G G A+F A I +G + +
Sbjct: 124 NISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLRA 183
Query: 267 GQKQMAEV 274
G+K A V
Sbjct: 184 GEKITATV 191
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 174 FATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY--QDKFKEWESSGVK 226
F GSG+ P+R + G + SD+ + K +AY Q+ +W+ SG K
Sbjct: 296 FNLGSGMMPVRKYLNLGINVVLGSDISAGHTCSLFKVIAYAIQNSKIKWQESGKK 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,709,502
Number of Sequences: 62578
Number of extensions: 282521
Number of successful extensions: 803
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 69
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)