Query 023223
Match_columns 285
No_of_seqs 163 out of 1491
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11872 antC anthranilate dio 100.0 3.8E-39 8.3E-44 293.4 26.1 219 53-284 103-325 (340)
2 cd06189 flavin_oxioreductase N 100.0 7E-39 1.5E-43 275.5 24.8 210 59-284 1-214 (224)
3 PRK08345 cytochrome-c3 hydroge 100.0 7.7E-39 1.7E-43 285.2 25.0 221 52-284 1-236 (289)
4 cd06211 phenol_2-monooxygenase 100.0 2.3E-38 5E-43 274.8 26.0 216 56-284 6-228 (238)
5 cd06210 MMO_FAD_NAD_binding Me 100.0 1.6E-38 3.4E-43 275.3 24.5 218 58-284 3-225 (236)
6 cd06209 BenDO_FAD_NAD Benzoate 100.0 2.5E-38 5.3E-43 272.8 25.2 211 58-284 3-217 (228)
7 PRK08051 fre FMN reductase; Va 100.0 1.9E-38 4E-43 274.4 24.5 213 56-284 2-219 (232)
8 cd06212 monooxygenase_like The 100.0 3E-38 6.5E-43 273.0 25.0 214 58-284 2-221 (232)
9 PRK07609 CDP-6-deoxy-delta-3,4 100.0 3E-38 6.4E-43 287.7 25.7 217 54-284 100-322 (339)
10 PRK10926 ferredoxin-NADP reduc 100.0 6.4E-38 1.4E-42 273.6 25.5 215 55-283 3-229 (248)
11 KOG0534 NADH-cytochrome b-5 re 100.0 6.6E-38 1.4E-42 272.8 25.4 224 51-284 46-278 (286)
12 cd06188 NADH_quinone_reductase 100.0 2.4E-38 5.2E-43 281.5 23.0 218 55-284 8-273 (283)
13 cd06217 FNR_iron_sulfur_bindin 100.0 1.6E-37 3.4E-42 268.8 25.5 217 56-284 1-225 (235)
14 cd06184 flavohem_like_fad_nad_ 100.0 2.8E-37 6.1E-42 269.3 27.0 218 54-284 4-233 (247)
15 cd06190 T4MO_e_transfer_like T 100.0 1.2E-37 2.6E-42 269.2 23.0 209 61-284 1-220 (232)
16 PTZ00319 NADH-cytochrome B5 re 100.0 2.9E-37 6.3E-42 276.1 26.1 231 48-284 25-292 (300)
17 cd06187 O2ase_reductase_like T 100.0 2.4E-37 5.2E-42 265.7 24.0 209 61-284 1-214 (224)
18 cd06213 oxygenase_e_transfer_s 100.0 3.9E-37 8.4E-42 265.2 24.9 209 58-284 2-217 (227)
19 cd06191 FNR_iron_sulfur_bindin 100.0 4.1E-37 9E-42 265.7 25.1 212 60-284 2-221 (231)
20 cd06221 sulfite_reductase_like 100.0 3.4E-37 7.3E-42 269.8 24.1 212 61-284 1-214 (253)
21 cd06215 FNR_iron_sulfur_bindin 100.0 7.7E-37 1.7E-41 263.8 25.9 213 60-284 2-221 (231)
22 PLN03116 ferredoxin--NADP+ red 100.0 5.8E-37 1.3E-41 275.3 25.5 220 54-281 22-280 (307)
23 cd06195 FNR1 Ferredoxin-NADP+ 100.0 3.8E-37 8.3E-42 267.6 23.2 211 60-284 1-225 (241)
24 PRK13289 bifunctional nitric o 100.0 9.2E-37 2E-41 283.7 27.1 218 54-284 152-382 (399)
25 PRK08221 anaerobic sulfite red 100.0 6.5E-37 1.4E-41 269.3 24.6 208 57-284 8-216 (263)
26 PLN03115 ferredoxin--NADP(+) r 100.0 6.7E-37 1.5E-41 278.6 25.0 221 53-282 87-341 (367)
27 PRK10684 HCP oxidoreductase, N 100.0 9.2E-37 2E-41 277.1 25.8 211 58-284 11-227 (332)
28 cd06208 CYPOR_like_FNR These f 100.0 8.9E-37 1.9E-41 271.7 24.7 220 54-282 6-261 (286)
29 PTZ00274 cytochrome b5 reducta 100.0 8.1E-37 1.8E-41 274.9 24.5 214 53-278 49-281 (325)
30 cd06196 FNR_like_1 Ferredoxin 100.0 8.7E-37 1.9E-41 261.4 23.5 204 58-284 2-210 (218)
31 COG1018 Hmp Flavodoxin reducta 100.0 2.9E-36 6.3E-41 263.8 26.2 211 54-284 3-220 (266)
32 cd00322 FNR_like Ferredoxin re 100.0 1.8E-36 3.9E-41 259.6 24.3 207 63-284 2-215 (223)
33 cd06183 cyt_b5_reduct_like Cyt 100.0 2.2E-36 4.7E-41 261.3 24.8 216 59-284 1-226 (234)
34 cd06216 FNR_iron_sulfur_bindin 100.0 7.7E-36 1.7E-40 259.7 25.8 213 54-284 15-234 (243)
35 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 4.5E-36 9.8E-41 274.7 25.2 221 56-284 1-231 (352)
36 cd06194 FNR_N-term_Iron_sulfur 100.0 9.2E-36 2E-40 255.7 24.2 206 61-284 1-211 (222)
37 PRK05464 Na(+)-translocating N 100.0 5.3E-36 1.2E-40 279.0 24.6 216 57-284 134-397 (409)
38 TIGR02911 sulfite_red_B sulfit 100.0 1E-35 2.3E-40 261.4 24.1 207 58-284 7-214 (261)
39 cd06214 PA_degradation_oxidore 100.0 1.9E-35 4.2E-40 256.7 25.4 218 57-284 2-230 (241)
40 TIGR01941 nqrF NADH:ubiquinone 100.0 8.3E-36 1.8E-40 277.4 23.9 217 56-284 129-393 (405)
41 PRK05713 hypothetical protein; 100.0 1.2E-35 2.5E-40 267.6 23.1 205 56-284 91-298 (312)
42 PRK06222 ferredoxin-NADP(+) re 100.0 1.4E-35 3E-40 263.3 22.6 202 59-284 2-205 (281)
43 PLN02252 nitrate reductase [NA 100.0 3.8E-35 8.2E-40 292.3 26.9 229 49-284 627-880 (888)
44 cd06218 DHOD_e_trans FAD/NAD b 100.0 5.8E-35 1.3E-39 254.7 23.2 201 61-284 1-204 (246)
45 TIGR03224 benzo_boxA benzoyl-C 100.0 8.6E-35 1.9E-39 270.1 24.7 219 53-282 139-385 (411)
46 cd06219 DHOD_e_trans_like1 FAD 100.0 6E-35 1.3E-39 254.9 22.2 203 59-284 1-204 (248)
47 COG0543 UbiB 2-polyprenylpheno 100.0 6.8E-34 1.5E-38 248.3 24.3 207 58-284 9-216 (252)
48 PRK00054 dihydroorotate dehydr 100.0 4.1E-34 8.9E-39 249.9 22.7 201 55-284 3-205 (250)
49 cd06198 FNR_like_3 NAD(P) bind 100.0 4.5E-34 9.8E-39 244.3 22.0 197 67-284 5-205 (216)
50 cd06201 SiR_like2 Cytochrome p 100.0 7.6E-34 1.6E-38 253.0 23.2 211 53-281 42-266 (289)
51 cd06192 DHOD_e_trans_like FAD/ 100.0 1.1E-33 2.4E-38 246.1 22.1 199 61-283 1-201 (243)
52 cd06220 DHOD_e_trans_like2 FAD 100.0 2.7E-33 5.9E-38 242.3 23.0 191 59-284 1-191 (233)
53 cd06182 CYPOR_like NADPH cytoc 100.0 2.3E-33 5E-38 247.2 21.6 201 70-282 16-237 (267)
54 PTZ00306 NADH-dependent fumara 100.0 3.6E-33 7.8E-38 287.8 26.2 228 48-284 906-1153(1167)
55 cd06200 SiR_like1 Cytochrome p 100.0 6.2E-33 1.4E-37 241.7 22.4 195 69-281 16-224 (245)
56 PRK05802 hypothetical protein; 100.0 1.3E-32 2.9E-37 247.6 23.9 214 54-284 62-280 (320)
57 cd06185 PDR_like Phthalate dio 100.0 2E-32 4.4E-37 233.1 21.5 197 62-284 1-200 (211)
58 cd06197 FNR_like_2 FAD/NAD(P) 100.0 5.9E-32 1.3E-36 231.9 18.9 189 63-284 2-214 (220)
59 PRK12778 putative bifunctional 100.0 4.8E-31 1E-35 262.8 23.8 202 59-284 2-205 (752)
60 COG4097 Predicted ferric reduc 100.0 9.1E-31 2E-35 230.1 18.6 204 56-284 215-425 (438)
61 PRK12779 putative bifunctional 100.0 1.1E-29 2.5E-34 255.9 25.3 214 55-284 647-871 (944)
62 cd06193 siderophore_interactin 100.0 1.8E-29 3.9E-34 218.7 18.7 199 61-284 1-223 (235)
63 PRK12775 putative trifunctiona 100.0 4.9E-29 1.1E-33 253.2 24.5 202 59-284 2-205 (1006)
64 COG2871 NqrF Na+-transporting 100.0 9E-29 2E-33 210.5 14.2 221 51-284 130-398 (410)
65 cd06186 NOX_Duox_like_FAD_NADP 100.0 6.8E-28 1.5E-32 205.1 16.8 176 64-282 4-198 (210)
66 cd06199 SiR Cytochrome p450- l 99.9 2.8E-27 6.1E-32 216.8 14.9 183 87-281 130-329 (360)
67 TIGR01931 cysJ sulfite reducta 99.9 1.2E-26 2.5E-31 224.9 14.9 184 87-282 367-567 (597)
68 cd06206 bifunctional_CYPOR The 99.9 1.7E-26 3.7E-31 213.5 15.0 184 88-283 146-351 (384)
69 cd06207 CyPoR_like NADPH cytoc 99.9 5.6E-26 1.2E-30 210.0 16.9 171 102-283 161-353 (382)
70 cd06203 methionine_synthase_re 99.9 5.3E-25 1.2E-29 204.3 17.7 173 103-281 172-367 (398)
71 cd06202 Nitric_oxide_synthase 99.9 6.3E-25 1.4E-29 204.2 17.8 170 103-281 175-371 (406)
72 PLN02292 ferric-chelate reduct 99.9 7.7E-24 1.7E-28 205.7 22.5 201 57-271 325-548 (702)
73 PRK10953 cysJ sulfite reductas 99.9 9.2E-25 2E-29 210.9 15.1 183 87-281 370-569 (600)
74 cd06204 CYPOR NADPH cytochrome 99.9 1.7E-23 3.6E-28 195.3 16.8 169 102-281 175-385 (416)
75 PRK06214 sulfite reductase; Pr 99.9 3.4E-23 7.3E-28 196.5 17.3 169 103-281 314-499 (530)
76 PLN02844 oxidoreductase/ferric 99.9 1.2E-21 2.5E-26 191.1 22.4 194 60-271 315-537 (722)
77 PLN02631 ferric-chelate reduct 99.9 8E-22 1.7E-26 191.4 19.5 165 58-235 309-491 (699)
78 COG0369 CysJ Sulfite reductase 99.9 1.1E-21 2.3E-26 187.5 16.2 168 103-281 371-556 (587)
79 KOG3378 Globins and related he 99.9 2.7E-22 5.9E-27 169.9 9.0 214 54-284 147-370 (385)
80 PF00175 NAD_binding_1: Oxidor 99.9 4.1E-21 9E-26 146.3 10.1 104 173-277 1-109 (109)
81 KOG1158 NADP/FAD dependent oxi 99.8 3.5E-19 7.5E-24 170.4 12.5 182 90-281 408-614 (645)
82 PF00970 FAD_binding_6: Oxidor 99.8 4.8E-18 1E-22 127.3 12.7 94 58-157 1-97 (99)
83 KOG0039 Ferric reductase, NADH 99.8 2.2E-17 4.7E-22 161.1 20.0 210 58-282 356-631 (646)
84 PRK06567 putative bifunctional 99.7 1.4E-16 3E-21 158.5 20.7 128 57-203 791-923 (1028)
85 KOG1159 NADP-dependent flavopr 99.7 4.7E-16 1E-20 141.6 11.7 163 103-281 366-544 (574)
86 PF08030 NAD_binding_6: Ferric 99.5 7.9E-14 1.7E-18 112.9 8.9 112 168-279 1-155 (156)
87 COG2375 ViuB Siderophore-inter 99.4 1.9E-10 4.2E-15 99.4 20.6 202 54-282 15-243 (265)
88 PF08022 FAD_binding_8: FAD-bi 99.1 1.6E-11 3.4E-16 93.0 -1.1 88 59-155 4-103 (105)
89 PF08021 FAD_binding_9: Sidero 98.7 8.1E-08 1.7E-12 74.0 7.8 91 60-155 1-116 (117)
90 PF04954 SIP: Siderophore-inte 96.5 0.024 5.2E-07 43.6 8.7 103 169-284 2-105 (119)
91 PLN02844 oxidoreductase/ferric 85.1 1.2 2.5E-05 44.9 4.4 40 244-283 659-698 (722)
92 PF00667 FAD_binding_1: FAD bi 80.7 1.7 3.7E-05 37.0 3.3 27 103-131 177-203 (219)
93 PF00667 FAD_binding_1: FAD bi 78.9 5.7 0.00012 33.7 5.9 45 54-102 6-55 (219)
94 PLN02292 ferric-chelate reduct 77.1 3.2 6.8E-05 41.7 4.3 38 242-283 652-689 (702)
95 PLN02631 ferric-chelate reduct 76.6 3.5 7.5E-05 41.4 4.4 38 243-283 649-686 (699)
96 PRK09783 copper/silver efflux 74.4 27 0.00058 32.8 9.6 40 58-101 279-321 (409)
97 PF01272 GreA_GreB: Transcript 69.0 16 0.00035 25.4 5.3 63 88-155 5-67 (77)
98 TIGR00999 8a0102 Membrane Fusi 67.7 31 0.00068 29.7 8.0 42 57-102 155-199 (265)
99 PRK01885 greB transcription el 66.4 22 0.00048 28.6 6.2 62 88-155 85-146 (157)
100 PF00677 Lum_binding: Lumazine 65.0 19 0.00041 25.7 5.0 77 58-150 7-83 (85)
101 PRK05753 nucleoside diphosphat 65.0 20 0.00044 28.1 5.6 62 89-155 55-116 (137)
102 PRK11556 multidrug efflux syst 64.9 25 0.00055 33.0 7.2 40 58-101 273-315 (415)
103 PRK12446 undecaprenyldiphospho 61.5 12 0.00026 34.3 4.3 24 169-192 2-27 (352)
104 PRK09578 periplasmic multidrug 56.7 72 0.0016 29.5 8.7 41 58-102 256-299 (385)
105 PRK00226 greA transcription el 56.6 25 0.00055 28.2 4.9 63 88-155 85-147 (157)
106 PRK06214 sulfite reductase; Pr 53.9 42 0.0009 32.8 6.7 44 55-102 167-215 (530)
107 COG0782 Uncharacterized conser 53.6 42 0.00091 26.9 5.7 63 88-155 78-140 (151)
108 PRK09859 multidrug efflux syst 53.0 87 0.0019 28.9 8.6 41 58-102 253-296 (385)
109 TIGR01462 greA transcription e 50.2 65 0.0014 25.6 6.3 63 88-155 80-142 (151)
110 TIGR01730 RND_mfp RND family e 47.9 1.9E+02 0.0042 25.3 10.0 42 57-102 203-247 (322)
111 PRK15030 multidrug efflux syst 47.0 1.3E+02 0.0029 27.9 8.8 41 58-102 257-300 (397)
112 TIGR01461 greB transcription e 46.5 77 0.0017 25.5 6.2 62 88-155 83-144 (156)
113 PRK05892 nucleoside diphosphat 42.7 70 0.0015 25.8 5.4 65 88-155 82-146 (158)
114 TIGR01931 cysJ sulfite reducta 38.0 99 0.0022 30.6 6.7 43 56-102 234-281 (597)
115 cd06204 CYPOR NADPH cytochrome 37.8 1E+02 0.0022 28.9 6.6 41 58-102 7-51 (416)
116 cd06199 SiR Cytochrome p450- l 37.2 67 0.0014 29.5 5.1 29 70-102 16-44 (360)
117 COG1465 Predicted alternative 36.9 53 0.0011 29.4 4.0 92 54-154 197-294 (376)
118 COG0421 SpeE Spermidine syntha 36.3 83 0.0018 28.0 5.3 28 169-201 78-105 (282)
119 PRK10953 cysJ sulfite reductas 33.8 1.2E+02 0.0026 30.1 6.5 43 56-102 237-284 (600)
120 COG0707 MurG UDP-N-acetylgluco 32.8 76 0.0017 29.2 4.7 32 170-202 2-35 (357)
121 cd06206 bifunctional_CYPOR The 32.6 86 0.0019 29.0 5.1 37 61-102 2-43 (384)
122 cd04482 RPA2_OBF_like RPA2_OBF 32.0 1.5E+02 0.0033 21.2 5.3 34 120-153 27-60 (91)
123 PRK13020 riboflavin synthase s 31.7 2.1E+02 0.0046 24.1 6.9 82 58-155 106-188 (206)
124 PF03033 Glyco_transf_28: Glyc 31.3 79 0.0017 23.9 4.0 51 171-232 1-53 (139)
125 PF08877 MepB: MepB protein; 29.6 2E+02 0.0043 22.3 5.7 51 67-130 14-65 (123)
126 PRK09289 riboflavin synthase s 28.9 2.3E+02 0.0051 23.6 6.6 78 58-151 105-182 (194)
127 KOG1159 NADP-dependent flavopr 27.9 81 0.0018 30.4 4.0 46 53-102 193-243 (574)
128 PRK00228 hypothetical protein; 27.8 2.2E+02 0.0048 23.6 6.3 97 120-218 39-147 (191)
129 cd06207 CyPoR_like NADPH cytoc 27.8 1E+02 0.0022 28.6 4.7 29 70-102 16-44 (382)
130 PF01959 DHQS: 3-dehydroquinat 26.4 4E+02 0.0086 24.6 8.0 109 53-174 174-292 (354)
131 COG3886 Predicted HKD family n 25.5 4E+02 0.0088 22.3 7.9 95 168-272 26-121 (198)
132 PRK11578 macrolide transporter 25.1 5.3E+02 0.011 23.5 9.1 41 58-102 256-301 (370)
133 cd06202 Nitric_oxide_synthase 25.0 1.4E+02 0.0031 27.8 5.2 31 69-102 15-45 (406)
134 PF13289 SIR2_2: SIR2-like dom 24.6 3.1E+02 0.0066 20.7 6.3 42 168-209 86-127 (143)
135 COG1326 Uncharacterized archae 24.5 1.3E+02 0.0028 25.2 4.1 58 91-153 25-87 (201)
136 smart00783 A_amylase_inhib Alp 24.4 2.2E+02 0.0048 19.3 4.5 44 55-98 11-54 (69)
137 PRK05089 cytochrome C oxidase 23.9 4.2E+02 0.0092 22.1 7.1 85 68-161 61-156 (188)
138 KOG1611 Predicted short chain- 23.0 5.1E+02 0.011 22.5 7.6 56 172-233 6-64 (249)
139 PF01356 A_amylase_inhib: Alph 22.8 1.7E+02 0.0036 19.9 3.6 43 56-98 11-53 (68)
140 PLN02741 riboflavin synthase 22.3 3.5E+02 0.0076 22.6 6.4 78 59-152 10-87 (194)
141 PF04225 OapA: Opacity-associa 20.5 1.9E+02 0.004 20.6 3.9 26 87-112 41-66 (85)
142 cd06430 GT8_like_2 GT8_like_2 20.5 3.1E+02 0.0067 24.7 6.1 52 170-222 2-53 (304)
143 TIGR00187 ribE riboflavin synt 20.3 3.9E+02 0.0085 22.4 6.4 80 58-153 9-88 (200)
No 1
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=3.8e-39 Score=293.36 Aligned_cols=219 Identities=20% Similarity=0.377 Sum_probs=188.8
Q ss_pred CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~- 131 (285)
+..+.+++|++++.++++++.++|+.++.. ..+.|+||||+.|++++....|+|||+|.|.. ++.++|+||.++
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~---~~~l~~~ik~~~~ 177 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHG--RQLDFLPGQYARLQIPGTDDWRSYSFANRPNA---TNQLQFLIRLLPD 177 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCC--CccCcCCCCEEEEEeCCCCceeecccCCCCCC---CCeEEEEEEECCC
Confidence 345668999999999999999999976421 13689999999999987666799999999864 789999999986
Q ss_pred CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223 132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~ 210 (285)
|.+|.+|+ ++++||+|.++||+|. |.++ ...++++|||||+||||+++|+++++..+...+++|+|++|+.++
T Consensus 178 G~~s~~L~~~l~~G~~v~i~gP~G~-f~l~-----~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d 251 (340)
T PRK11872 178 GVMSNYLRERCQVGDEILFEAPLGA-FYLR-----EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAAD 251 (340)
T ss_pred CcchhhHhhCCCCCCEEEEEcCcce-eEeC-----CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEEEEecCChHH
Confidence 57899997 5999999999999999 5554 235799999999999999999999987666678999999999999
Q ss_pred cccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 211 ~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|.++|++|.. .+|+++.+++++++.|.+..|++++.+.+.. ....+..||+|||+.|++.+.+.|.++|+
T Consensus 252 l~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 252 LCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQAL 325 (340)
T ss_pred hccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999999999987 4899999999888899999999998776531 22245689999999999999999999997
No 2
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=7e-39 Score=275.54 Aligned_cols=210 Identities=27% Similarity=0.479 Sum_probs=182.4
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHH
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEV 137 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~ 137 (285)
++|++++.+++++++++|+.++. ..|+||||+.|++++. ..|+|||++.|.. ++.++|+||.++ |.+|++
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~-~~r~ySi~s~~~~---~~~l~~~vk~~~~G~~s~~ 71 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAP-----LDFLAGQYLDLLLDDG-DKRPFSIASAPHE---DGEIELHIRAVPGGSFSDY 71 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCC-----cccCCCCEEEEEcCCC-CceeeecccCCCC---CCeEEEEEEecCCCccHHH
Confidence 47999999999999999997652 6899999999999864 4789999999864 689999999986 678888
Q ss_pred hhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223 138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (285)
Q Consensus 138 L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (285)
|++ +++||+|.++||+|.++ +.. ...++++|||||+||||++++++++++.+...+++|+|++|+.++++|+++
T Consensus 72 l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~ 146 (224)
T cd06189 72 VFEELKENGLVRIEGPLGDFF-LRE----DSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDEL 146 (224)
T ss_pred HHHhccCCCEEEEecCCccEE-ecc----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHH
Confidence 875 99999999999999944 432 246789999999999999999999987666789999999999999999999
Q ss_pred HHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 217 FKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 217 l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|++|.++ +++++.++++++++|.+..|++++.+.+. ..+..+..+|+|||+.|++++++.|.+.|+
T Consensus 147 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~--~~~~~~~~v~vCGp~~m~~~~~~~l~~~G~ 214 (224)
T cd06189 147 LEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLED--FPDLSDFDVYACGSPEMVYAARDDFVEKGL 214 (224)
T ss_pred HHHHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhh--ccCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 9999874 88999899988788988999999887763 223456789999999999999999999997
No 3
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=7.7e-39 Score=285.20 Aligned_cols=221 Identities=24% Similarity=0.430 Sum_probs=180.1
Q ss_pred CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
++..|+.++|++++++++++..++|++..+.....+.|+||||+.|++++.+. ++|||+|.|.. ++.++|+||..
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~-~pySias~p~~---~~~l~l~Ik~~- 75 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE-VPISICSSPTR---KGFFELCIRRA- 75 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCc-eeeEecCCCCC---CCEEEEEEEeC-
Confidence 35678899999999999998888887654321123579999999999986544 68999999864 68999999997
Q ss_pred CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccc
Q 023223 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~ 210 (285)
|.+|++|+++++||+|.++||+|.+|.++. ...++++||||||||||+++|++++++.+ ...+|+|+|++|+.++
T Consensus 76 G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d 151 (289)
T PRK08345 76 GRVTTVIHRLKEGDIVGVRGPYGNGFPVDE----MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYED 151 (289)
T ss_pred ChHHHHHHhCCCCCEEEEeCCCCCCCCccc----ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHH
Confidence 999999999999999999999999776542 23468999999999999999999987655 4579999999999999
Q ss_pred cccHHHHHHHHH--CCCEEEEEeeCCCCCCCc------------cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHH
Q 023223 211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSG------------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCY 276 (285)
Q Consensus 211 ~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~------------~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~ 276 (285)
++|++||++|.. .+++++.++++++ +|.+ ..|++.+.+.+. ..+.++..+|+|||++|++++.
T Consensus 152 ~~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~vyiCGP~~m~~~v~ 228 (289)
T PRK08345 152 LLFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA--NTDPKNTYAAICGPPVMYKFVF 228 (289)
T ss_pred hhHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--CCCccccEEEEECCHHHHHHHH
Confidence 999999999976 3788888888743 4432 246666655442 2334567899999999999999
Q ss_pred HHHHhcCC
Q 023223 277 CFCLEFSA 284 (285)
Q Consensus 277 ~~L~~~Gv 284 (285)
+.|.++|+
T Consensus 229 ~~L~~~Gv 236 (289)
T PRK08345 229 KELINRGY 236 (289)
T ss_pred HHHHHcCC
Confidence 99999987
No 4
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=2.3e-38 Score=274.77 Aligned_cols=216 Identities=28% Similarity=0.461 Sum_probs=183.9
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~ 134 (285)
...++|.+++.++++++.++|+.+++. ...|+||||+.|++++....|+|||++.+.. ++.++|+||.++ |.+
T Consensus 6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~i~~~~~G~~ 79 (238)
T cd06211 6 DFEGTVVEIEDLTPTIKGVRLKLDEPE---EIEFQAGQYVNLQAPGYEGTRAFSIASSPSD---AGEIELHIRLVPGGIA 79 (238)
T ss_pred EEeEEEEEEEecCCCEEEEEEEcCCCC---cCccCCCCeEEEEcCCCCCccccccCCCCCC---CCEEEEEEEECCCCcc
Confidence 447999999999999999999987642 2479999999999987656789999999864 689999999985 678
Q ss_pred hHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223 135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (285)
Q Consensus 135 s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (285)
|++|+ .+++||+|.++||+|+++ +.. +..++++|||||+||||++++++++++.+...+++|+|++|+.++++|
T Consensus 80 s~~l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~ 154 (238)
T cd06211 80 TTYVHKQLKEGDELEISGPYGDFF-VRD----SDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYY 154 (238)
T ss_pred hhhHhhcCCCCCEEEEECCccceE-ecC----CCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhcc
Confidence 99997 699999999999999844 432 245789999999999999999999987665678999999999999999
Q ss_pred HHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHHHhhhcC-CCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 214 QDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 214 ~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~-~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
.++|++|..+ +++++.+++++ ++.|.+..|++++.+.+. .. +.++..+|+|||+.|++.+.+.|.+.|+
T Consensus 155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKH--FKNDFRGHKAYLCGPPPMIDACIKTLMQGRL 228 (238)
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHh--cccccccCEEEEECCHHHHHHHHHHHHHcCC
Confidence 9999999874 78888888874 357888899998866552 22 3356789999999999999999999997
No 5
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=1.6e-38 Score=275.34 Aligned_cols=218 Identities=19% Similarity=0.402 Sum_probs=185.8
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcc-cccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l-~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s 135 (285)
.++|+++++++++++.++|+.++..++ ....|+||||+.|++++....|+|||++.|.. ++.++|+||..+ |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNW---DGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCC---CCEEEEEEEEcCCCccc
Confidence 688999999999999999998653100 12579999999999997677889999999864 689999999875 6789
Q ss_pred HHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 136 EVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 136 ~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
++|++ +++||+|.++||+|+ |.++. ...++++|||||+||||+++|+++++..+...+++|+|++|+.++++|.
T Consensus 80 ~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~ 154 (236)
T cd06210 80 TYLETRAKVGQRLNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYL 154 (236)
T ss_pred hhhhhCcCCCCEEEEecCcce-eeecC----CCCccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecCCHHHhhhH
Confidence 99997 999999999999999 76652 2457899999999999999999998876666789999999999999999
Q ss_pred HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|++|.+. +++++.+++++++.|.+..|++.+.+.+.. ........+|+|||++|++.+++.|.++|+
T Consensus 155 ~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l-~~~~~~~~vyicGp~~m~~~~~~~l~~~G~ 225 (236)
T cd06210 155 DELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDL-ASSDAKPDIYLCGPPGMVDAAFAAAREAGV 225 (236)
T ss_pred HHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhh-cccCCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999999874 899999999877788888999988766532 112245689999999999999999999987
No 6
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=2.5e-38 Score=272.82 Aligned_cols=211 Identities=21% Similarity=0.399 Sum_probs=182.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
.++|++++.+++++++++|+.++. ....|+||||+.|++++....|+|||++.|. ++.++|+||.++ |.+|+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~---~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~----~~~i~~~i~~~~~G~~s~ 75 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEA---GALAFLPGQYVNLQVPGTDETRSYSFSSAPG----DPRLEFLIRLLPGGAMSS 75 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCC---CcCccCCCCEEEEEeCCCCcccccccccCCC----CCeEEEEEEEcCCCcchh
Confidence 588999999999999999998763 2368999999999998766778999999886 689999999975 67899
Q ss_pred HhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223 137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (285)
||++ +++||+|.++||+|.. .+.. ..++++|||||+||||++++++++...+...+++|+|++|+.++++|++
T Consensus 76 ~l~~~l~~G~~v~v~gP~G~~-~~~~-----~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 149 (228)
T cd06209 76 YLRDRAQPGDRLTLTGPLGSF-YLRE-----VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELD 149 (228)
T ss_pred hHHhccCCCCEEEEECCcccc-eecC-----CCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHhccHH
Confidence 9998 9999999999999984 4432 3478999999999999999999988766667899999999999999999
Q ss_pred HHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|++|.+. ++++++++++++. |.+..|++++.+.+. .....+..+|+|||+.|++++++.|.++|+
T Consensus 150 ~l~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~--~~~~~~~~v~icGp~~m~~~~~~~l~~~G~ 217 (228)
T cd06209 150 RLEALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAE--DLNDGDVDVYLCGPPPMVDAVRSWLDEQGI 217 (228)
T ss_pred HHHHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHh--hccCCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence 99999864 8888888887554 888889999876653 223346789999999999999999999997
No 7
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.9e-38 Score=274.39 Aligned_cols=213 Identities=22% Similarity=0.344 Sum_probs=181.6
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCC-cc
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG-ST 134 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G-~~ 134 (285)
+.+++|.+++.++++++.++|+.+++ ..|+||||++|+++.. ..|+|||+|.|.. ++.++|+||..++ ..
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~-~~r~ySias~p~~---~~~l~~~v~~~~~~~~ 72 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAP-----FSFRAGQYLMVVMGEK-DKRPFSIASTPRE---KGFIELHIGASELNLY 72 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCC-----CccCCCCEEEEEcCCC-cceeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence 46799999999999999999986543 5899999999999753 4588999999864 7889999999864 34
Q ss_pred hH-HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223 135 AE-VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (285)
Q Consensus 135 s~-~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (285)
+. .++++++||+|.+.||+|.+| +.. +..++++|||||+||||++++++++++.+...+++|+|++|+.++++|
T Consensus 73 ~~~~~~~l~~G~~v~v~gP~G~~~-~~~----~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~~~ 147 (232)
T PRK08051 73 AMAVMERILKDGEIEVDIPHGDAW-LRE----ESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGREEDHLYD 147 (232)
T ss_pred hHHHHHHcCCCCEEEEEcCCCceE-ccC----CCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHhhh
Confidence 44 456899999999999999954 431 245789999999999999999999987767789999999999999999
Q ss_pred HHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH-HhcCC
Q 023223 214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC-LEFSA 284 (285)
Q Consensus 214 ~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L-~~~Gv 284 (285)
.++|++|.++ +++++.+++++++.|.+..|++++.+.+. ..+..+..+|+|||++|++.+++.| .++|+
T Consensus 148 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~m~~~v~~~l~~~~G~ 219 (232)
T PRK08051 148 LDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQD--FGSLAEYDIYIAGRFEMAKIARELFCRERGA 219 (232)
T ss_pred hHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhh--ccCcccCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 9999999885 89999999988888999999998877653 2233456899999999999999999 89987
No 8
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=3e-38 Score=272.98 Aligned_cols=214 Identities=23% Similarity=0.412 Sum_probs=183.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
+++|.+++.+++++++++|+.+.+. .+.|+||||+.|++++....|+|||++.|.+ .+.++|+||.++ |.+|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~~~G~~s~ 75 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE---PIKFFAGQYVDITVPGTEETRSFSMANTPAD---PGRLEFIIKKYPGGLFSS 75 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC---cCCcCCCCeEEEEcCCCCcccccccCCCCCC---CCEEEEEEEECCCCchhh
Confidence 5789999999999999999976642 3579999999999987677899999999874 589999999986 57899
Q ss_pred HhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223 137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (285)
+|++ +++||+|.+.||+|.++ +.. ...++++|||||+||||++++++++++.+...+++|+|++|+.++++|.+
T Consensus 76 ~l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 150 (232)
T cd06212 76 FLDDGLAVGDPVTVTGPYGTCT-LRE----SRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLE 150 (232)
T ss_pred HHhhcCCCCCEEEEEcCcccce-ecC----CCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHH
Confidence 9996 99999999999999854 432 24679999999999999999999998776677899999999999999999
Q ss_pred HHHHHHHC--CCEEEEEeeCCC--CCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~~--~~~v~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|++|.+. +++++++++++. +.|.+..|++++.+.+. ..+.++..+|+|||++|++.+.+.|.++|+
T Consensus 151 ~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~~CGp~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 151 EIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRN--EATLAGCDVYLCGPPPMIDAALPVLEMSGV 221 (232)
T ss_pred HHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhh--ccCccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999874 788888888753 56888889998866552 333356789999999999999999999997
No 9
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=3e-38 Score=287.72 Aligned_cols=217 Identities=24% Similarity=0.454 Sum_probs=185.9
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G 132 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G 132 (285)
..+.+++|++++.++++++.++|+.++.. .+.|+||||+.|++++ +..|+|||+|.|.. .+.++|+||.++ |
T Consensus 100 ~~~~~~~V~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~ik~~~~G 172 (339)
T PRK07609 100 VKKLPCRVASLERVAGDVMRLKLRLPATE---RLQYLAGQYIEFILKD-GKRRSYSIANAPHS---GGPLELHIRHMPGG 172 (339)
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEEcCCCC---CCccCCCCeEEEECCC-CceeeeecCCCCCC---CCEEEEEEEecCCC
Confidence 35668999999999999999999986432 3689999999999985 45689999999874 589999999876 6
Q ss_pred cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
.+|++|+ .+++||+|.++||+|. |.+.. +..++++||||||||||+++|+++++..+...+|+|+|++|+.+++
T Consensus 173 ~~s~~l~~~l~~G~~v~v~gP~G~-~~~~~----~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl 247 (339)
T PRK07609 173 VFTDHVFGALKERDILRIEGPLGT-FFLRE----DSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDL 247 (339)
T ss_pred ccHHHHHHhccCCCEEEEEcCcee-EEecC----CCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHh
Confidence 8899997 6999999999999999 54542 3567899999999999999999999877667789999999999999
Q ss_pred ccHHHHHHHHHC--CCEEEEEeeC--CCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 212 AYQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 212 ~~~~~l~~l~~~--~~~v~~~~s~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++++++++|.++ ++++++++++ +++.|.+..|++++.+.++ ..+..+..+|+|||+.|++.+++.|.++|+
T Consensus 248 ~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~--~~~~~~~~vy~CGp~~m~~~~~~~l~~~G~ 322 (339)
T PRK07609 248 YLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED--FPDLSGHQVYACGSPVMVYAARDDFVAAGL 322 (339)
T ss_pred ccHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh--cccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999999864 7999888887 4677889999999887663 333356789999999999999999999986
No 10
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=6.4e-38 Score=273.55 Aligned_cols=215 Identities=22% Similarity=0.348 Sum_probs=174.8
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEc--CCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~--~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~- 131 (285)
.|.+++|.+++++++++++++|+.+. ..|+||||++|+++ +....|+|||+|.|. ++.++|+||.++
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~------~~~~pGQfv~l~~~~~g~~~~R~ySias~p~----~~~l~~~ik~~~~ 72 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV------DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD----NPDLEFYLVTVPE 72 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC------CCCCCCCEEEEEEecCCcEEEeeecccCCCC----CCeEEEEEEEeCC
Confidence 68899999999999999999998531 36899999999985 333468999999986 568999999986
Q ss_pred CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
|.+|++|+++++||+|.++||.|..|.++.. ...++++|||||||||||++|++++.+.+...+++|+|++|+.+++
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~---~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~ 149 (248)
T PRK10926 73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEV---PDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAARYAADL 149 (248)
T ss_pred CCcChHHHhCCCCCEEEEecCCCcceEccCC---CCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHH
Confidence 6899999999999999999987555666521 1347999999999999999999998765666789999999999999
Q ss_pred ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh-----h-cCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK-----K-IFNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~-----~-~~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
+|+++|++|..+ +++++.++++++ .+.+..|++++.+.+.. . ..+.++..+|+|||++|++++++.|.+.
T Consensus 150 ~~~~el~~l~~~~~~~~~v~~~~s~~~-~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 150 SYLPLMQELEQRYEGKLRIQTVVSRET-APGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred HHHHHHHHHHHhCcCCEEEEEEECCCC-CCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 999999999874 688888888743 23345788876543211 0 1123467899999999999999999764
Q ss_pred C
Q 023223 283 S 283 (285)
Q Consensus 283 G 283 (285)
+
T Consensus 229 ~ 229 (248)
T PRK10926 229 R 229 (248)
T ss_pred c
Confidence 3
No 11
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6.6e-38 Score=272.84 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=197.7
Q ss_pred cCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEE
Q 023223 51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVK 128 (285)
Q Consensus 51 ~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk 128 (285)
.++..|.++++++++.++.|+..++|.++.+.+ ...+..||||.++++.++ ..|+||+.|.+.. .+.|+|+||
T Consensus 46 ~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~--~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~---~g~~~l~VK 120 (286)
T KOG0534|consen 46 VDPESYYPFRLIDKTELSHDTSLFRFVLPSADH--VLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD---KGYFDLVVK 120 (286)
T ss_pred cCCcceEEEEEEEEEeccCCceeEEEecCCchh--ccCcccceEEEEEecCCCcEEEEecCCccCccc---cceEEEEEE
Confidence 355589999999999999999999999985543 378999999999999653 4799999999974 589999999
Q ss_pred EeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccC
Q 023223 129 SVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGAR 206 (285)
Q Consensus 129 ~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r 206 (285)
.++ |.+|++|++|++||+|+++||.|+ |.+++ +..+++.|||||||||||+++++++++.. +..++.|+|+++
T Consensus 121 ~Y~~G~mS~~l~~LkiGd~ve~rGP~G~-~~~~~----~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~ 195 (286)
T KOG0534|consen 121 VYPKGKMSQHLDSLKIGDTVEFRGPIGE-FKYDP----QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANK 195 (286)
T ss_pred eccCCcccHHHhcCCCCCEEEEecCccc-eEecC----CCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecC
Confidence 998 799999999999999999999999 77763 35899999999999999999999999654 478999999999
Q ss_pred CccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCC-CcEEEEECchhHHH-HHHHHHHh
Q 023223 207 NLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAE-VCYCFCLE 281 (285)
Q Consensus 207 ~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~vyiCGp~~m~~-~~~~~L~~ 281 (285)
++++++++++|+++..+ .|++..++++++..|.+..|++...+..+......+ ++.++||||++|++ .++..|.+
T Consensus 196 te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le~ 275 (286)
T KOG0534|consen 196 TEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLEK 275 (286)
T ss_pred CccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHHh
Confidence 99999999999999985 789999999999999999999999988865444444 58999999999997 57888888
Q ss_pred cCC
Q 023223 282 FSA 284 (285)
Q Consensus 282 ~Gv 284 (285)
+|.
T Consensus 276 Lg~ 278 (286)
T KOG0534|consen 276 LGY 278 (286)
T ss_pred cCC
Confidence 875
No 12
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=2.4e-38 Score=281.47 Aligned_cols=218 Identities=23% Similarity=0.418 Sum_probs=182.4
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----------------------------C--
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----------------------------G-- 103 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----------------------------~-- 103 (285)
.+..++|++++.+++++++++|+.+++. ...|+||||+.|++++. +
T Consensus 8 ~~~~~~v~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
T cd06188 8 KKWECTVISNDNVATFIKELVLKLPSGE---EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP 84 (283)
T ss_pred ceEEEEEEEcccccchhhheEEecCCCc---eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence 4557999999999999999999987542 24799999999999753 1
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI 173 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl 173 (285)
..|+|||+|.|.. ++.++|+||.. .|.+|++|+++++||+|.++||+|. |.+. +..++++|
T Consensus 85 ~~R~ySias~p~~---~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~l~-----~~~~~~vl 155 (283)
T cd06188 85 VSRAYSLANYPAE---EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGE-FFIK-----DTDREMVF 155 (283)
T ss_pred cccccCcCCCCCC---CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccc-cccc-----CCCCcEEE
Confidence 2489999999864 68999999972 3678999999999999999999999 5453 24579999
Q ss_pred EEcCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCC--CCCCccccccchH
Q 023223 174 FATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAA 248 (285)
Q Consensus 174 iAgGtGIaP~~sil~~~~~~~~-~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~--~~~~~~~g~v~~~ 248 (285)
||||||||||++|+++++..+. ..+++|+|++|+.++++|.++|++|..+ +++++++++++. +.|.+..|++++.
T Consensus 156 IAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~ 235 (283)
T cd06188 156 IGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQV 235 (283)
T ss_pred EEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHH
Confidence 9999999999999999876543 4789999999999999999999999874 788888888754 6788899999988
Q ss_pred HHHhhhc--CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 249 FSRAKKI--FNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 249 ~~~~~~~--~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+.+.... .+..+..+|+|||+.|++++.+.|.++|+
T Consensus 236 ~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 236 LLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGV 273 (283)
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 7764211 12346789999999999999999999997
No 13
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=1.6e-37 Score=268.76 Aligned_cols=217 Identities=25% Similarity=0.415 Sum_probs=184.9
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-CC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VG--KPTFLAIASPPSFASASGAFEFLVKSVA- 131 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~- 131 (285)
|.+++|++++.+++++++++|+.++.. ...|+||||+.|+++. .+ ..|+|||++.|.. .+.++|+||..+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~---~~~l~l~v~~~~~ 74 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV---PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ---RGRVELTVKRVPG 74 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC---cCCcCCcCeEEEEEecCCCceeeeeecccCCCCC---CCeEEEEEEEcCC
Confidence 788999999999999999999987642 2579999999999972 22 3489999999864 679999999986
Q ss_pred CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223 132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~ 210 (285)
|.+|.+|++ +++||.|.+.||+|. |.+.. ...++++|||||+||||++++++++++.+...++.++|++|+.++
T Consensus 75 G~~s~~l~~~l~~Gd~v~i~gP~G~-~~~~~----~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~~~~ 149 (235)
T cd06217 75 GEVSPYLHDEVKVGDLLEVRGPIGT-FTWNP----LHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAED 149 (235)
T ss_pred CcchHHHHhcCCCCCEEEEeCCcee-eEeCC----CCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCCHHH
Confidence 578999985 899999999999998 66642 246789999999999999999999987766788999999999999
Q ss_pred cccHHHHHHHHHC--CCEEEEEeeCC-CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 211 MAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 211 ~~~~~~l~~l~~~--~~~v~~~~s~~-~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|+++|.++..+ +++++.+++++ .+.|.+..|++++...+.. ..+.++..+|+|||++|++++.+.|.++|+
T Consensus 150 ~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~v~~~l~~~Gv 225 (235)
T cd06217 150 VIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAEL-VPPLAGRRVYVCGPPAFVEAATRLLLELGV 225 (235)
T ss_pred hhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhh-CCCccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 9999999999874 78888888876 5678888899998765532 223456799999999999999999999997
No 14
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=2.8e-37 Score=269.33 Aligned_cols=218 Identities=22% Similarity=0.334 Sum_probs=185.4
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC----CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKS 129 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~----~~~~~~si~s~p~~~~~~~~l~l~Vk~ 129 (285)
..|+.++|.+++++++++++++|+.++... ...|+||||+.|.++.. ...|+|||++.|. ++.++|+||.
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~l~~~ik~ 77 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGP--LPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN----GDYYRISVKR 77 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC----CCeEEEEEEE
Confidence 378899999999999999999999765422 15799999999999643 3578999999986 5699999998
Q ss_pred eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (285)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~ 207 (285)
.+ |.+|+||++ +++||+|.|.||+|. |.++. ...++++||||||||||++++++++.+.+...++.|+|++|+
T Consensus 78 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~-~~~~~----~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~ 152 (247)
T cd06184 78 EPGGLVSNYLHDNVKVGDVLEVSAPAGD-FVLDE----ASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARN 152 (247)
T ss_pred cCCCcchHHHHhcCCCCCEEEEEcCCCc-eECCC----CCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCc
Confidence 76 689999997 999999999999998 76652 246789999999999999999999987666788999999999
Q ss_pred ccccccHHHHHHHHHC--CCEEEEEeeCCCCCC----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh
Q 023223 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281 (285)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~ 281 (285)
.++++|+++|++|..+ +++++++++++.+.| .+..|+++.....+ .....+..+|+|||++|++++++.|.+
T Consensus 153 ~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~v~icGp~~m~~~v~~~l~~ 230 (247)
T cd06184 153 SAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRE--LLLPADADFYLCGPVPFMQAVREGLKA 230 (247)
T ss_pred hhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhh--ccCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 9999999999999875 899999998875543 56788988765543 223457899999999999999999999
Q ss_pred cCC
Q 023223 282 FSA 284 (285)
Q Consensus 282 ~Gv 284 (285)
+|+
T Consensus 231 ~G~ 233 (247)
T cd06184 231 LGV 233 (247)
T ss_pred cCC
Confidence 987
No 15
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=1.2e-37 Score=269.17 Aligned_cols=209 Identities=21% Similarity=0.391 Sum_probs=177.2
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~ 139 (285)
|++++.+++++++++|+.+++ ..|+||||+.|++++....|+|||++.|.. .+.++|+||..+ |.+|.+|+
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~~~~~vk~~~~G~~s~~l~ 72 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP-----ADFLPGQYALLALPGVEGARAYSMANLANA---SGEWEFIIKRKPGGAASNALF 72 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc-----cccCCCCEEEEECCCCCcccCccCCcCCCC---CCEEEEEEEEcCCCcchHHHh
Confidence 467899999999999997653 479999999999987656789999999864 589999999875 67899998
Q ss_pred C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc--CCCCcEEEEEccCCccccccHHH
Q 023223 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDK 216 (285)
Q Consensus 140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~--~~~~~v~l~~~~r~~~~~~~~~~ 216 (285)
+ +++||+|.++||+|.++ +.. +..++++|||||+||||++++++++.+. .+..+++|+|++|+.++++|+++
T Consensus 73 ~~~~~g~~v~v~gP~G~~~-~~~----~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~e 147 (232)
T cd06190 73 DNLEPGDELELDGPYGLAY-LRP----DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDE 147 (232)
T ss_pred hcCCCCCEEEEECCcccce-ecC----CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHH
Confidence 6 79999999999999955 321 3467899999999999999999999865 45689999999999999999999
Q ss_pred HHHHHHC--CCEEEEEeeCCCC----CCCccccccchHHHHhhhcCC-CCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 217 FKEWESS--GVKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 217 l~~l~~~--~~~v~~~~s~~~~----~~~~~~g~v~~~~~~~~~~~~-~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|++|.+. +++++++++++.. .|.+..|++++.+.+. ..+ ..+..||+|||++|++.+.+.|.+.|+
T Consensus 148 l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~ 220 (232)
T cd06190 148 LSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEAT--LGDRLAEFEFYFAGPPPMVDAVQRMLMIEGV 220 (232)
T ss_pred HHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhh--ccCCccccEEEEECCHHHHHHHHHHHHHhCC
Confidence 9999984 7888888876543 4888899999876663 222 456899999999999999999998875
No 16
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=2.9e-37 Score=276.15 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=186.8
Q ss_pred hhccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCCCCC
Q 023223 48 AVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASG 121 (285)
Q Consensus 48 ~~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~~~~ 121 (285)
++.+++..|..++|++++.++++++.++|+.+++. ....|+||||+.|+++.. ...|+||+++.|.+ ++
T Consensus 25 ~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~--~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~---~~ 99 (300)
T PTZ00319 25 PVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPT--QRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE---KG 99 (300)
T ss_pred ccccCcCceEEEEEEEEEEcCCCceEEEEECCCCc--ccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc---CC
Confidence 55568889999999999999999999999976542 236799999999999743 23688999998864 78
Q ss_pred eEEEEEEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCcccCCCC---C--------CCCCCeEEEEEcCcch
Q 023223 122 AFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQ---P--------PDEYPTVLIFATGSGI 180 (285)
Q Consensus 122 ~l~l~Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~---~--------~~~~~~~vliAgGtGI 180 (285)
.++|+||.+ + |.+|++|+++++||+|.++||+|. |.+.... . ....++++|||||+||
T Consensus 100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI 178 (300)
T PTZ00319 100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGK-FEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI 178 (300)
T ss_pred EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEcccee-eEecCCcceeeccccccccccccceEEEEecCccc
Confidence 999999987 3 799999999999999999999998 5443100 0 0123589999999999
Q ss_pred hHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHHHHHC-CCEEEEEeeC-CCCCCCccccccchHHHHhhhc-C
Q 023223 181 SPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQ-PDGNWSGETGYVQAAFSRAKKI-F 256 (285)
Q Consensus 181 aP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~v~~~~s~-~~~~~~~~~g~v~~~~~~~~~~-~ 256 (285)
||+++|++++++.. +..++.|+|++|+.++++|.++|+++... +++++.++++ +.+.|.+..|++++.+.++... .
T Consensus 179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~ 258 (300)
T PTZ00319 179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVP 258 (300)
T ss_pred CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHhhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCc
Confidence 99999999987653 35689999999999999999999987653 7898888886 4567888899999876654211 1
Q ss_pred C-----CCCcEEEEECchhHHH-HHHHHHHhcCC
Q 023223 257 N-----PQGTGVVLCGQKQMAE-VCYCFCLEFSA 284 (285)
Q Consensus 257 ~-----~~~~~vyiCGp~~m~~-~~~~~L~~~Gv 284 (285)
. .++..+|+|||++|++ .+++.|+++|+
T Consensus 259 ~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~ 292 (300)
T PTZ00319 259 DPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGY 292 (300)
T ss_pred cccccccCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 1 1357899999999999 56889999997
No 17
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.4e-37 Score=265.74 Aligned_cols=209 Identities=26% Similarity=0.451 Sum_probs=180.0
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC-eeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHh
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVL 138 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~-~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L 138 (285)
|++++++++++++++|+.++. ..|+||||+.|++++.. ..|+|||+|.|.+ .+.++|+||..+ |.+|++|
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~-----~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~---~~~~~~~i~~~~~G~~s~~l 72 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP-----LPFWAGQYVNVTVPGRPRTWRAYSPANPPNE---DGEIEFHVRAVPGGRVSNAL 72 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC-----CCcCCCceEEEEcCCCCCcceeccccCCCCC---CCEEEEEEEeCCCCcchHHH
Confidence 568899999999999997654 57999999999998654 5689999999874 589999999974 7899999
Q ss_pred hC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223 139 CG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (285)
Q Consensus 139 ~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (285)
++ +++||.|.+.||+|. |.+.. +..++++|||||+||||+++|++++...+...+++++|++|+.++++|.++|
T Consensus 73 ~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l 147 (224)
T cd06187 73 HDELKVGDRVRLSGPYGT-FYLRR----DHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGL 147 (224)
T ss_pred hhcCccCCEEEEeCCccc-eEecC----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHH
Confidence 97 999999999999998 54432 2367899999999999999999999876666799999999999999999999
Q ss_pred HHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 218 KEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 218 ~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|..+ +++++++++++++.|.+..|++++.+.+. ..+.++..+|+|||++|++.+++.|+++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~ 214 (224)
T cd06187 148 LALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRD--GPDWADHDIYICGPPAMVDATVDALLARGA 214 (224)
T ss_pred HHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHh--ccccccCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999874 78888888887667888899999887663 223356789999999999999999999987
No 18
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=3.9e-37 Score=265.23 Aligned_cols=209 Identities=21% Similarity=0.408 Sum_probs=178.9
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
+++|++++.+++++++++|+.++. ..|+||||+.|++++....|+|||++.|.. .+.++|+||..+ |.+|+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~---~~~l~~~vk~~~~G~~s~ 73 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRP-----IAYKAGQYAELTLPGLPAARSYSFANAPQG---DGQLSFHIRKVPGGAFSG 73 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCC-----CCcCCCCEEEEEeCCCCcccccccCCCCCC---CCEEEEEEEECCCCcchH
Confidence 578999999999999999986532 579999999999986556789999999864 689999999876 67899
Q ss_pred Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223 137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (285)
+|. .+++||+|.++||+|. |.+.. ..++++|||||+||||++++++++.+.+...++.++|++|+.++++|.+
T Consensus 74 ~l~~~l~~G~~v~i~gP~G~-~~~~~-----~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~ 147 (227)
T cd06213 74 WLFGADRTGERLTVRGPFGD-FWLRP-----GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALD 147 (227)
T ss_pred HHHhcCCCCCEEEEeCCCcc-eEeCC-----CCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhccHH
Confidence 985 5999999999999998 55541 3478999999999999999999998766677899999999999999999
Q ss_pred HHHHHHHC---CCEEEEEeeCCC--CCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWESS---GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~~---~~~v~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|+++..+ +++++.++++.. ..|.+..|++++.+.+. . ..+..+|+|||++|++.+++.|.++|+
T Consensus 148 ~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~--~--~~~~~v~~CGp~~~~~~~~~~l~~~G~ 217 (227)
T cd06213 148 EIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEV--L--LAATEAYLCGPPAMIDAAIAVLRALGI 217 (227)
T ss_pred HHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhh--c--cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999863 788888887653 45788889998876653 2 356789999999999999999999987
No 19
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=4.1e-37 Score=265.69 Aligned_cols=212 Identities=19% Similarity=0.288 Sum_probs=179.2
Q ss_pred EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
+|++++.+++++++++|+.++.. .+.|+||||+.|+++.. ...|+|||++.+. .+.++|.||.++ |.+|+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~l~~~v~~~~~G~~s~ 74 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPL---QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA----PDEISITVKRVPGGRVSN 74 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCC---CCCCCCCCeEEEEEecCCeEEeeeeeccCCCC----CCeEEEEEEECCCCccch
Confidence 68999999999999999976542 25799999999999643 3468999999886 678999999986 57899
Q ss_pred Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223 137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (285)
||+ ++++||+|.++||+|+ |.++. ...++++||||||||||+++|++++++.....++.++|++|+.++++|++
T Consensus 75 ~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 149 (231)
T cd06191 75 YLREHIQPGMTVEVMGPQGH-FVYQP----QPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQ 149 (231)
T ss_pred HHHhcCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHH
Confidence 998 6999999999999998 76652 24578999999999999999999998766678999999999999999999
Q ss_pred HHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|++|.+. +++++++++++ .+.|.+..|++.+.+.+. ...+..+..+|+|||+.|++.+++.|.++|+
T Consensus 150 el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~vyicGp~~mv~~~~~~l~~~G~ 221 (231)
T cd06191 150 ELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAA-LIPDRLEREAFICGPAGMMDAVETALKELGM 221 (231)
T ss_pred HHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHH-hCccccCCeEEEECCHHHHHHHHHHHHHcCC
Confidence 99999874 89999999864 356777778887766553 2223345789999999999999999999987
No 20
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=3.4e-37 Score=269.79 Aligned_cols=212 Identities=26% Similarity=0.534 Sum_probs=181.4
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhC
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG 140 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~ 140 (285)
|.+++.+++++..++|+++.+.. ....|+||||+.|+++..+. ++|||++.|.. ++.++|+||.. |.+|++|++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~-~~~~~~pGQ~i~l~~~~~~~-~pySi~s~~~~---~~~l~~~Ik~~-G~~S~~L~~ 74 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDE-ELFTFKPGQFVMLSLPGVGE-APISISSDPTR---RGPLELTIRRV-GRVTEALHE 74 (253)
T ss_pred CceEEeccCCceEEEEEeCCCcc-ccCCcCCCCEEEEEcCCCCc-cceEecCCCCC---CCeEEEEEEeC-ChhhHHHHc
Confidence 56889999999999999866421 12689999999999986555 78999999964 68999999987 889999999
Q ss_pred CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHH
Q 023223 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKE 219 (285)
Q Consensus 141 l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (285)
+++|++|.++||+|++|.++. ...+++||||||+||||+++|++++++.. ...+++|+|++|+.++++|+++|++
T Consensus 75 l~~G~~v~i~gP~G~~f~~~~----~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~ 150 (253)
T cd06221 75 LKPGDTVGLRGPFGNGFPVEE----MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKE 150 (253)
T ss_pred CCCCCEEEEECCcCCCccccc----ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHH
Confidence 999999999999999776531 14689999999999999999999998653 4578999999999999999999999
Q ss_pred HHHC-CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 220 WESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 220 l~~~-~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|..+ +++++++++++.+.|.+..|++++.+.+. .....+..+|+|||+.|++.+++.|.+.|+
T Consensus 151 l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 151 WAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPEL--TLDPDNTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred HHhcCCeEEEEEeCCCCCCccCCccccchhHHhc--CCCcCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 9985 78898889988888888889999876653 233356789999999999999999999987
No 21
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=7.7e-37 Score=263.79 Aligned_cols=213 Identities=21% Similarity=0.330 Sum_probs=181.3
Q ss_pred EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
+|++++.+++++++++|+.++.. .+.|+||||+.|+++..+ ..|+|||++.|.. .+.++|+||..+ |.+|.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~s~ 75 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGS---LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR---PDSLSITVKRVPGGLVSN 75 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCC---cCCcCCCCeEEEEEecCCCeEEEeeecccCCCC---CCcEEEEEEEcCCCcchH
Confidence 68999999999999999987542 267999999999997543 3689999999864 677999999886 68999
Q ss_pred Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223 137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (285)
||+ ++++||+|.++||+|. |.+.. ...++++|||||+||||+++|++++++.+...++.++|++|+.++++|.+
T Consensus 76 ~l~~~~~~G~~v~i~gP~G~-f~~~~----~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 150 (231)
T cd06215 76 WLHDNLKVGDELWASGPAGE-FTLID----HPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFAD 150 (231)
T ss_pred HHHhcCCCCCEEEEEcCcce-eEeCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHHH
Confidence 997 6999999999999998 76642 23689999999999999999999998766678899999999999999999
Q ss_pred HHHHHHH--CCCEEEEEeeCCCCC-CCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~--~~~~v~~~~s~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|++|.+ .+++++++++++++. |.+..|++++...+.. ..+..+..+|+|||+.|++.+++.|.++|+
T Consensus 151 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~~~~~l~~~gv 221 (231)
T cd06215 151 ELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLALL-VPDLKERTVFVCGPAGFMKAVKSLLAELGF 221 (231)
T ss_pred HHHHHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHHh-cCCccCCeEEEECCHHHHHHHHHHHHHcCC
Confidence 9999987 478998888886664 8888999987655532 233345789999999999999999999987
No 22
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=5.8e-37 Score=275.25 Aligned_cols=220 Identities=21% Similarity=0.275 Sum_probs=176.4
Q ss_pred CCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--------eeeeeeecCCCCCCC-C
Q 023223 54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--------KPTFLAIASPPSFAS-A 119 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--------~~~~~si~s~p~~~~-~ 119 (285)
..+..++|++++.++ +++++++|+.+.+ +.|.||||+.|.+++.. ..|+|||+|.|.... +
T Consensus 22 ~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~-----~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~ 96 (307)
T PLN03116 22 KAPYTATIVSVERIVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFD 96 (307)
T ss_pred CCCEEEEEEeeEEcccCCCCCceEEEEEecCCC-----CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCC
Confidence 344589999999999 8999999997643 78999999999876421 368999999985311 1
Q ss_pred CCeEEEEEEEe--------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHH
Q 023223 120 SGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRS 185 (285)
Q Consensus 120 ~~~l~l~Vk~~--------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~s 185 (285)
...++|+||+. .|.+|+||+++++||+|.++||+|.+|.... .+..++++|||||||||||++
T Consensus 97 ~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---~~~~~~~vlIAgGtGIaP~~s 173 (307)
T PLN03116 97 GKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPE---EDPNATHIMVATGTGIAPFRG 173 (307)
T ss_pred CCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCC---CCCCCcEEEEecCccHHHHHH
Confidence 23799999986 3789999999999999999999999554321 124578999999999999999
Q ss_pred HHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhc--
Q 023223 186 LIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI-- 255 (285)
Q Consensus 186 il~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~-- 255 (285)
|+++++..+. ..+++|+|++|+.++++|.++|++|..+ +++++++++++.+.|.+..|++++.+.+....
T Consensus 174 ml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~ 253 (307)
T PLN03116 174 FLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIF 253 (307)
T ss_pred HHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHH
Confidence 9998875331 3679999999999999999999999874 68999999998888888889998866553211
Q ss_pred C-CCCCcEEEEECchhHHHHHHHHHHh
Q 023223 256 F-NPQGTGVVLCGQKQMAEVCYCFCLE 281 (285)
Q Consensus 256 ~-~~~~~~vyiCGp~~m~~~~~~~L~~ 281 (285)
. ..++..+|+|||++|++.+.+.|.+
T Consensus 254 ~~~~~~~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 254 KLLDNGAHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred hhhcCCcEEEEeCCHHHHHHHHHHHHH
Confidence 1 1246789999999999988777665
No 23
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=3.8e-37 Score=267.59 Aligned_cols=211 Identities=24% Similarity=0.357 Sum_probs=178.4
Q ss_pred EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-C--eeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (285)
Q Consensus 60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s 135 (285)
+|++++.+++++++++|+.++. ..|+||||+.|+++.. + ..|+|||++.+. ++.++|+||.++ |.+|
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~----~~~i~~~i~~~~~G~~s 71 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIP-----FRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY----EENLEFYIILVPDGPLT 71 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCC-----CccCCCCeEEEeccCCCCCeeeecccccCCCC----CCeEEEEEEEecCCCCc
Confidence 4789999999999999986542 6799999999999854 3 468999999986 689999999875 6899
Q ss_pred HHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 136 EVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 136 ~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
+||+++++||.|.+. ||+|+ |.++.. ...++++||||||||||+++++++++...+..++.|+|++|+.++++|+
T Consensus 72 ~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~d~~~~ 147 (241)
T cd06195 72 PRLFKLKPGDTIYVGKKPTGF-LTLDEV---PPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQ 147 (241)
T ss_pred hHHhcCCCCCEEEECcCCCCc-eeecCC---CCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCCHHHhhhH
Confidence 999999999999999 99998 766531 1357999999999999999999999866667899999999999999999
Q ss_pred HHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh---hc---CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 215 DKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---KI---FNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 215 ~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~~---~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|++|..+ +++++.+++++++.| +..|++++.+.... .. ...++..+|+|||++|++.+++.|.++|+
T Consensus 148 ~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 148 DEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGF 225 (241)
T ss_pred HHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999999875 789998999887777 67788887654210 01 12256789999999999999999999997
No 24
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=9.2e-37 Score=283.71 Aligned_cols=218 Identities=20% Similarity=0.330 Sum_probs=182.1
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--Ce--eeeeeecCCCCCCCCCCeEEEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GK--PTFLAIASPPSFASASGAFEFLVKS 129 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~--~~~~si~s~p~~~~~~~~l~l~Vk~ 129 (285)
..|++++|++++.++++++.++|+.+++.. ...|+||||+.|+++.. .. +|+|||++.|. ++.++|+||.
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~----~~~l~~~Vk~ 225 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGP--VADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN----GKYYRISVKR 225 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCc--CCCCCCCCeEEEEEecCCccccceeEEEeeeCCC----CCeEEEEEEE
Confidence 567889999999999999999999765322 25799999999999633 22 49999999986 6799999999
Q ss_pred eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (285)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~ 207 (285)
.+ |.+|.+|++ +++||+|.++||+|+ |.++. ...++++||||||||||+++|+++++..+...+++|+|++|+
T Consensus 226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~ 300 (399)
T PRK13289 226 EAGGKVSNYLHDHVNVGDVLELAAPAGD-FFLDV----ASDTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARN 300 (399)
T ss_pred CCCCeehHHHhhcCCCCCEEEEEcCccc-cccCC----CCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence 86 689999986 999999999999998 76753 246789999999999999999999987667789999999999
Q ss_pred ccccccHHHHHHHHHC--CCEEEEEeeCCCC-CCC----ccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH
Q 023223 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDG-NWS----GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL 280 (285)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~-~~~----~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~ 280 (285)
.++++|+++|++|... +++++.+++++.. .|. +..|+++...... .....+..+|+|||++|++.+.+.|.
T Consensus 301 ~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~--~~~~~~~~vyiCGp~~m~~~v~~~L~ 378 (399)
T PRK13289 301 GGVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEA--WLPDPDADFYFCGPVPFMQFVAKQLL 378 (399)
T ss_pred hhhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHh--hCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 9999999999999875 7899988887643 222 2358888755542 22224678999999999999999999
Q ss_pred hcCC
Q 023223 281 EFSA 284 (285)
Q Consensus 281 ~~Gv 284 (285)
+.|+
T Consensus 379 ~~Gv 382 (399)
T PRK13289 379 ELGV 382 (399)
T ss_pred HcCC
Confidence 9997
No 25
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=6.5e-37 Score=269.32 Aligned_cols=208 Identities=17% Similarity=0.412 Sum_probs=177.1
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchH
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAE 136 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~ 136 (285)
.+++|++++++++++++++|+.+ ..|+||||+.|++++.+. ++|||++.+ ++.++|+||.. |.+|+
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~-------~~~~pGQfi~l~~~~~~~-~pySi~~~~-----~~~~~~~Ik~~-G~~S~ 73 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD-------GPVKPGQFFEVSLPKVGE-APISVSDYG-----DGYIDLTIRRV-GKVTD 73 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC-------CCCCCCceEEEEeCCCCc-ceeeccCCC-----CCEEEEEEEeC-Cchhh
Confidence 46999999999999999999842 368999999999986554 789998875 67899999988 99999
Q ss_pred HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHH
Q 023223 137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQD 215 (285)
Q Consensus 137 ~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-~~~v~l~~~~r~~~~~~~~~ 215 (285)
+|+++++||+|.++||+|++|.++. ...++++||||||||||++++++++++... ..+++|+|++|+.++++|++
T Consensus 74 ~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~ 149 (263)
T PRK08221 74 EIFNLKEGDKLFLRGPYGNGFPVDT----YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKE 149 (263)
T ss_pred HHHhCCCCCEEEEECCCCCCcccCc----cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHH
Confidence 9999999999999999998776652 245799999999999999999999876543 46899999999999999999
Q ss_pred HHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 216 KFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 216 ~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|++|... ++++++++++++.|.+..|++++.+.+. ...+..+..+|+|||++|++.+++.|.++|+
T Consensus 150 el~~~~~~-~~~~~~~~~~~~~~~~~~G~v~~~l~~~-~~~~~~~~~vylCGp~~mv~~~~~~L~~~Gv 216 (263)
T PRK08221 150 DLKRWREK-INLILTLDEGEEGYRGNVGLVTKYIPEL-TLKDIDNMQVIVVGPPIMMKFTVLEFLKRGI 216 (263)
T ss_pred HHHHHhhc-CcEEEEecCCCCCCccCccccChhhHhc-cCCCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999874 4566667777788988999999866552 1223356789999999999999999999987
No 26
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=6.7e-37 Score=278.56 Aligned_cols=221 Identities=22% Similarity=0.329 Sum_probs=178.8
Q ss_pred CCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CCC
Q 023223 53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SAS 120 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~~ 120 (285)
++....++|++++.+.. ++++++|+.+.+ +.|.||||+.|.+++. ..+|+|||+|.+..+ .++
T Consensus 87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~-----~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~ 161 (367)
T PLN03115 87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGE-----IPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDS 161 (367)
T ss_pred cCCCeEEEEEeecccccCCCCCceEEEEEcCCCC-----CCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCC
Confidence 33445678998888876 899999986543 6899999999998632 246899999998421 125
Q ss_pred CeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHh
Q 023223 121 GAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190 (285)
Q Consensus 121 ~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~ 190 (285)
+.++|+||+. .|.+|+||+++++||+|.+.||+|.+|.+.. +..++++|||||||||||++++++.
T Consensus 162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~----~~~~~iImIAgGTGIAP~rs~L~~~ 237 (367)
T PLN03115 162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPK----DPNATIIMLATGTGIAPFRSFLWKM 237 (367)
T ss_pred CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCc----CCCCCEEEEeCCeeHHHHHHHHHHH
Confidence 7899999975 3789999999999999999999999665431 3456899999999999999999987
Q ss_pred hccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCC
Q 023223 191 FSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNP 258 (285)
Q Consensus 191 ~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~ 258 (285)
+.... ..+++||||+|+.++++|+++|++|..+ +|+++.++|++++.|.|..||+++.+.+... ....
T Consensus 238 ~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~ 317 (367)
T PLN03115 238 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKK 317 (367)
T ss_pred HhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhccc
Confidence 53221 3679999999999999999999999874 7999999999988999999999997765321 1223
Q ss_pred CCcEEEEECchhHHHHHHHHHHhc
Q 023223 259 QGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 259 ~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
.+..+|+|||++|++.+.++|.+.
T Consensus 318 ~~~~vYiCGp~~M~~~V~~~l~~l 341 (367)
T PLN03115 318 DNTYVYMCGLKGMEKGIDDIMVSL 341 (367)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 568999999999999998888764
No 27
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=9.2e-37 Score=277.06 Aligned_cols=211 Identities=18% Similarity=0.328 Sum_probs=175.9
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s 135 (285)
.++|.+++.++++++.++|+.++. +.|+||||+.|++++. ...|+|||+|.|.. ++.++|+||+++ |.+|
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~-----~~f~pGQfv~l~~~~~~~~~R~ySias~p~~---~~~l~i~Vk~~~~G~~S 82 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDF-----YPYRAGQYALVSIRNSAETLRAYTLSSTPGV---SEFITLTVRRIDDGVGS 82 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCC-----CCcCCCCEEEEEecCCCEeeeeecccCCCCC---CCcEEEEEEEcCCCcch
Confidence 789999999999999999985432 6799999999999854 34689999999864 678999999987 5789
Q ss_pred HHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 136 EVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 136 ~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
+||+ ++++||+|.++||+|+ |.++. ...++++|||||+||||+++|+++++..+...+++|+|++|+.++++|+
T Consensus 83 ~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~~ 157 (332)
T PRK10684 83 QWLTRDVKRGDYLWLSDAMGE-FTCDD----KAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIFA 157 (332)
T ss_pred hHHHhcCCCCCEEEEeCCccc-cccCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhhH
Confidence 9997 6999999999999999 66642 2457899999999999999999998776667899999999999999999
Q ss_pred HHHHHHHHC--CCEEEEEeeCCCCCCCc-cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 215 DKFKEWESS--GVKIVPVLSQPDGNWSG-ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~-~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|++|..+ +++++.+.++. .+.+ ..|+++..+.+. ...+..+..+|+|||++|++.+++.|.++|+
T Consensus 158 ~el~~l~~~~~~~~~~~~~~~~--~~~~~~~grl~~~~l~~-~~~~~~~~~vyiCGP~~m~~~v~~~l~~~Gv 227 (332)
T PRK10684 158 DEWRQLKQRYPQLNLTLVAENN--ATEGFIAGRLTRELLQQ-AVPDLASRTVMTCGPAPYMDWVEQEVKALGV 227 (332)
T ss_pred HHHHHHHHHCCCeEEEEEeccC--CCCCccccccCHHHHHH-hcccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999875 67777666543 2333 578888755543 1233346789999999999999999999987
No 28
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=8.9e-37 Score=271.66 Aligned_cols=220 Identities=23% Similarity=0.331 Sum_probs=179.5
Q ss_pred CCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------CeeeeeeecCCCCCC-CCC
Q 023223 54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------GKPTFLAIASPPSFA-SAS 120 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------~~~~~~si~s~p~~~-~~~ 120 (285)
+....++|++++.++ +++++++|+.+.. +.|+|||||.|.+++. ...|+|||+|.|... .++
T Consensus 6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~ 80 (286)
T cd06208 6 KNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGK-----LPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDG 80 (286)
T ss_pred CCCeEEEEEeceeccCCCCCcceEEEEEeCCCc-----ccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCC
Confidence 345579999999999 6999999997432 6899999999987631 136899999988531 114
Q ss_pred CeEEEEEEEeC-----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223 121 GAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (285)
Q Consensus 121 ~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~ 189 (285)
+.++|+||..+ |.+|.||+++++||+|.+.||+|++|... .+..++++|||||||||||++|+++
T Consensus 81 ~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~ 156 (286)
T cd06208 81 KTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIATGTGIAPFRSFLRR 156 (286)
T ss_pred CEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEecCccHHHHHHHHHH
Confidence 78999999874 67899999999999999999999865432 1235689999999999999999999
Q ss_pred hhcc-----CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCC
Q 023223 190 GFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN 257 (285)
Q Consensus 190 ~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~ 257 (285)
++.. +...+++|+|++|+.++++|+++|++|..+ +++++++++++++.|.+..|++++.+.+... ...
T Consensus 157 ~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~ 236 (286)
T cd06208 157 LFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLD 236 (286)
T ss_pred HHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHh
Confidence 8754 345789999999999999999999999973 6899999999888888889999987665211 122
Q ss_pred CCCcEEEEECchhHHHHHHHHHHhc
Q 023223 258 PQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 258 ~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
..+..+|+|||++|++.+++.|.+.
T Consensus 237 ~~~~~vYiCGp~~m~~~v~~~L~~~ 261 (286)
T cd06208 237 KDNTHVYICGLKGMEPGVDDALTSV 261 (286)
T ss_pred cCCcEEEEeCCchHHHHHHHHHHHH
Confidence 3456899999999999999999873
No 29
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=8.1e-37 Score=274.95 Aligned_cols=214 Identities=18% Similarity=0.310 Sum_probs=176.5
Q ss_pred CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----CeeeeeeecCCCCCCCCCCeEEEEE
Q 023223 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLV 127 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----~~~~~~si~s~p~~~~~~~~l~l~V 127 (285)
...|.+++|.+++.+++++++|+|++++.. .+.|.||||+++.++.. ...|+|||+|.|.. ++.|+|+|
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~---~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~---~~~le~~I 122 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEE---EFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT---KGYFDIIV 122 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCccc---ccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC---CCeEEEEE
Confidence 457999999999999999999999986532 36899999999887622 24689999999975 68999999
Q ss_pred EEeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC------CCCcEE
Q 023223 128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK------ERSDVR 200 (285)
Q Consensus 128 k~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~------~~~~v~ 200 (285)
|+++ |.+|.+|+++++||+|.++||.|. |.++. +..++++||||||||||+++|++++++.+ +..+|+
T Consensus 123 K~~~~G~~S~~L~~lk~Gd~v~v~GP~f~-~~~~~----~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~ 197 (325)
T PTZ00274 123 KRKKDGLMTNHLFGMHVGDKLLFRSVTFK-IQYRP----NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLS 197 (325)
T ss_pred EEcCCCcccHHHhcCCCCCEEEEeCCeee-cccCC----CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEE
Confidence 9987 578999999999999999999775 54431 34579999999999999999999987643 346899
Q ss_pred EEEccCCccccccHHHHHHHHHC---CCEEEEEeeCC--CCCCCccccccchHHHHhhhcCCC--CCcEEEEECchhHHH
Q 023223 201 LYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQMAE 273 (285)
Q Consensus 201 l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~--~~~~vyiCGp~~m~~ 273 (285)
|+|++|+.++++|+++|++|+.+ +++++.+++++ ++.|.+..|++++.+..+. ..+. .+..+|+|||+.|++
T Consensus 198 Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~-~~~~~~~~~~vylCGPp~Mm~ 276 (325)
T PTZ00274 198 FLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRT-MPAPEEKKKIIMLCGPDQLLN 276 (325)
T ss_pred EEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHh-cCCCccCCcEEEEeCCHHHHH
Confidence 99999999999999999999873 58999999865 4678889999998765432 2222 336899999999999
Q ss_pred HHHHH
Q 023223 274 VCYCF 278 (285)
Q Consensus 274 ~~~~~ 278 (285)
.+.+.
T Consensus 277 av~~~ 281 (325)
T PTZ00274 277 HVAGT 281 (325)
T ss_pred HhcCC
Confidence 98654
No 30
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=8.7e-37 Score=261.37 Aligned_cols=204 Identities=19% Similarity=0.311 Sum_probs=171.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC---eeeeeeecCCCCCCCCCCeEEEEEEEeC--C
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA--G 132 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~---~~~~~si~s~p~~~~~~~~l~l~Vk~~~--G 132 (285)
.++|++++.+++++++++|+.++. +.|+||||+.|+++..+ ..|+|||+|.|. ++.++|+||.++ |
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~----~~~l~~~vk~~~~~g 72 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG-----YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE----DDVLEFVIKSYPDHD 72 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc-----CCCCCCCEEEEEeeCCCCCccccccccccCCC----CCeEEEEEEEcCCCC
Confidence 578999999999999999997653 57999999999997543 478999999986 689999999975 5
Q ss_pred cchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 023223 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA 212 (285)
Q Consensus 133 ~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~ 212 (285)
.+|.+|+++++||+|.++||+|+ |.. .++++||||||||||++++++++++.++..+++|+|++|+.++++
T Consensus 73 ~~s~~l~~l~~G~~v~i~gP~G~-~~~--------~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~ 143 (218)
T cd06196 73 GVTEQLGRLQPGDTLLIEDPWGA-IEY--------KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDII 143 (218)
T ss_pred cHhHHHHhCCCCCEEEEECCccc-eEe--------cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecCCHHHHh
Confidence 78999999999999999999998 533 247999999999999999999998766667899999999999999
Q ss_pred cHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 213 ~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|+++|++|. +++++.+++++... ....|++++.+.++ ........+|+|||++|++.+++.|.++|+
T Consensus 144 ~~~el~~l~--~~~~~~~~s~~~~~-~~~~g~~~~~~l~~--~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 144 LKDELEKML--GLKFINVVTDEKDP-GYAHGRIDKAFLKQ--HVTDFNQHFYVCGPPPMEEAINGALKELGV 210 (218)
T ss_pred hHHHHHHhh--cceEEEEEcCCCCC-CeeeeEECHHHHHH--hcCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999995 46777777764322 12478888765553 222334689999999999999999999997
No 31
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=2.9e-36 Score=263.83 Aligned_cols=211 Identities=20% Similarity=0.315 Sum_probs=177.1
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
..|..++|.+++++++++++|+|+.+++.. +.|+||||+.|.++.++ ..|.|||+|+|.. ++.+.|.||+.+
T Consensus 3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~---~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~---~~~~~isVk~~~ 76 (266)
T COG1018 3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLR---LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE---DSLYRISVKRED 76 (266)
T ss_pred CceEEEEEEEEEEecCceEEEEEEcCCCCc---cccCCCCeEEEEecCCCceeeEEEEeccCCCC---CceEEEEEEEeC
Confidence 468899999999999999999999877632 27999999999999764 5788999999985 569999999998
Q ss_pred -CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223 132 -GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (285)
Q Consensus 132 -G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~ 209 (285)
|..|+||+ ++++||+|.+.+|.|. |.++.. ...+++|||||+|||||+||++.+.+.+. .+|.|+|++|+.+
T Consensus 77 ~G~~S~~Lh~~lk~Gd~l~v~~P~G~-F~l~~~----~~~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~ 150 (266)
T COG1018 77 GGGGSNWLHDHLKVGDTLEVSAPAGD-FVLDDL----PERKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPA 150 (266)
T ss_pred CCcccHHHHhcCCCCCEEEEecCCCC-ccCCCC----CCCcEEEEeccccHhHHHHHHHHHHHhCC-CCEEEEEecCChh
Confidence 79999999 7999999999999999 777642 34489999999999999999999988777 8999999999999
Q ss_pred ccccHHHHHHHHHC--C-CEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 210 RMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 210 ~~~~~~~l~~l~~~--~-~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++.|+++ +.+..+ + ..+..+.+ |....|+++...+.. ...+.. ..+|+|||.+|++++...|.++|+
T Consensus 151 ~~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~-~~~~~~-r~~y~CGp~~fm~av~~~l~~~g~ 220 (266)
T COG1018 151 DLAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLS-AAPDGG-REVYLCGPGPFMQAVRLALEALGV 220 (266)
T ss_pred hcchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhc-cCCCCC-CEEEEECCHHHHHHHHHHHHHcCC
Confidence 9999999 877764 3 34444444 444567777765552 122223 899999999999999999999886
No 32
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=1.8e-36 Score=259.59 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=174.6
Q ss_pred EEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC--CCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223 63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (285)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~--~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~ 139 (285)
.++.++++++.++|+.++. ..|+||||+.|++++ ....|+|||++.|.. .+.++|+||.++ |.+|+||+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~~~l~vk~~~~G~~s~~l~ 73 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNG-----FSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE---EGELELTVKIVPGGPFSAWLH 73 (223)
T ss_pred ceEEecCCeEEEEEecCCC-----CCcCCCcEEEEEecCCCCcceeeeeccCCCCC---CCeEEEEEEEeCCCchhhHHh
Confidence 4677889999999997652 689999999999986 356789999999973 589999999997 79999999
Q ss_pred CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 023223 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219 (285)
Q Consensus 140 ~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (285)
++++||+|.++||+|+++ +. ....++++|||||+||||+++|++++.......+++|+|++|+.++++|+++|++
T Consensus 74 ~~~~G~~v~i~gP~G~~~-~~----~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~ 148 (223)
T cd00322 74 DLKPGDEVEVSGPGGDFF-LP----LEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEE 148 (223)
T ss_pred cCCCCCEEEEECCCcccc-cC----cccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHH
Confidence 999999999999999954 32 1357899999999999999999999987666789999999999999999999999
Q ss_pred HHH--CCCEEEEEeeCCCCCCCccccccc--hHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 220 WES--SGVKIVPVLSQPDGNWSGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 220 l~~--~~~~v~~~~s~~~~~~~~~~g~v~--~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|.. .++++++++++++..|.+..+++. +.+.. .....++..+|+|||++|++.+++.|.++|+
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yvCGp~~m~~~~~~~L~~~gv 215 (223)
T cd00322 149 LAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILA--LLPDDSGALVYICGPPAMAKAVREALVSLGV 215 (223)
T ss_pred HHHhCCCeEEEEEecCCCCCCCcccceeeHHHHHHh--hcccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 987 378999999988777766666554 22222 2233467899999999999999999999986
No 33
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=2.2e-36 Score=261.27 Aligned_cols=216 Identities=22% Similarity=0.360 Sum_probs=183.2
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s 135 (285)
++|++++.+++++..++|+.++.. ....|+||||+.|+++.. ...|+|||++.+.. ++.++|+||.++ |.+|
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~---~~~~~~~v~~~~~G~~s 75 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPD--QVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD---KGYFDLLIKIYPGGKMS 75 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCC--CcCCCCcccEEEEEecCCCcccccccccccCCCc---CCEEEEEEEECCCCcch
Confidence 468999999999999999987532 126799999999999863 34688999998864 678999999975 7899
Q ss_pred HHhhCCCCCCEEEEEeecCCCcccCCCCCCCCC-CeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccccc
Q 023223 136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEY-PTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAY 213 (285)
Q Consensus 136 ~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~-~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~ 213 (285)
++|+++++||+|.++||+|. |.++. +.. ++++|||||+||||+++++++++... ...+|+++|++|+.++.+|
T Consensus 76 ~~l~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~ 150 (234)
T cd06183 76 QYLHSLKPGDTVEIRGPFGK-FEYKP----NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILL 150 (234)
T ss_pred hHHhcCCCCCEEEEECCccc-eeecC----CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhh
Confidence 99999999999999999998 76652 233 79999999999999999999997643 4679999999999999999
Q ss_pred HHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcC-CCCCcEEEEECchhHHH-HHHHHHHhcCC
Q 023223 214 QDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAE-VCYCFCLEFSA 284 (285)
Q Consensus 214 ~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~vyiCGp~~m~~-~~~~~L~~~Gv 284 (285)
.++|++|... +++++++++++++.|.+..|++++.+.+..... ...+..+|+|||++|++ .+++.|.++|+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~ 226 (234)
T cd06183 151 REELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGY 226 (234)
T ss_pred HHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 9999999874 789999999888889899999998766532111 23567899999999999 99999999987
No 34
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=7.7e-36 Score=259.69 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=178.4
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCC-CCCCCCeEEEEEEEe
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPS-FASASGAFEFLVKSV 130 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~-~~~~~~~l~l~Vk~~ 130 (285)
..+..++|++++.+++++++++|+.++. ...|+||||+.|.++.. ...|+|||++.|. . ++.++|+||.+
T Consensus 15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~----~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~---~~~l~~~ik~~ 87 (243)
T cd06216 15 ARELRARVVAVRPETADMVTLTLRPNRG----WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQE---DGTITLTVKAQ 87 (243)
T ss_pred cceeEEEEEEEEEcCCCcEEEEEecCCC----CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCC---CCeEEEEEEEc
Confidence 3456899999999999999999996543 25799999999999643 3468999999885 3 78999999998
Q ss_pred C-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223 131 A-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (285)
Q Consensus 131 ~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~ 208 (285)
+ |.+|.+|++ +++||+|.+.||+|. |.++. +..++++|||||+||||++++++++...+...++.++|++|+.
T Consensus 88 ~~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~~ 162 (243)
T cd06216 88 PDGLVSNWLVNHLAPGDVVELSQPQGD-FVLPD----PLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTR 162 (243)
T ss_pred CCCcchhHHHhcCCCCCEEEEECCcee-eecCC----CCCCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCCh
Confidence 6 678999985 999999999999998 76652 2367999999999999999999999876667889999999999
Q ss_pred cccccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 209 ~~~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++++|.++|++|.+ .+++++++++++ +..|++.....++ ...+.++..+|+|||++|++++++.|.+.|+
T Consensus 163 ~~~~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~-~~~~~~~~~vyvcGp~~m~~~~~~~l~~~Gv 234 (243)
T cd06216 163 EDVIFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDA-VVPDLADRQVYACGPPGFLDAAEELLEAAGL 234 (243)
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHH-hccCcccCeEEEECCHHHHHHHHHHHHHCCC
Confidence 99999999999985 378888877764 4567887765553 2233355799999999999999999999997
No 35
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=4.5e-36 Score=274.69 Aligned_cols=221 Identities=21% Similarity=0.281 Sum_probs=179.8
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-G 132 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G 132 (285)
|+.++|.+++.+++++++|+|+.+++. ...+.|+|||||+|+++.. ...|+|||+|.|. ++.++|+||.++ |
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~-~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~----~~~l~i~vk~~~~G 75 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDEL-AEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA----PGEIRVAVKKIPGG 75 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccc-cccCCCCCCCeEEEEEecCCcEeeeeccccCCCC----CCcEEEEEEEeCCC
Confidence 568899999999999999999976431 0125799999999999633 3468999999885 689999999987 5
Q ss_pred cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
.+|.||+ ++++||+|.+.||+|. |.++... ...++++|||||+||||+++|+++++..+...+++|+|++|+.+++
T Consensus 76 ~~S~~l~~~l~~Gd~v~v~gP~G~-f~~~~~~--~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~ 152 (352)
T TIGR02160 76 LFSTWANDEIRPGDTLEVMAPQGL-FTPDLST--PHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTLVYGNRRTASV 152 (352)
T ss_pred cchHHHHhcCCCCCEEEEeCCcee-eecCCCc--cccccEEEEeccccHhHHHHHHHHHHhcCCCceEEEEEEeCCHHHH
Confidence 7899997 7999999999999998 6664211 1347899999999999999999998876667899999999999999
Q ss_pred ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh--hc-CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK--KI-FNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~--~~-~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|+++|++|... +++++++++++++.|.+..|+++.....+. .. .......+|+|||+.|++.+++.|.++|+
T Consensus 153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGV 231 (352)
T ss_pred HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999999764 588888899877777666777754332211 11 22345689999999999999999999987
No 36
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=9.2e-36 Score=255.70 Aligned_cols=206 Identities=17% Similarity=0.282 Sum_probs=169.0
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~ 139 (285)
|.+++.+++++++++|+.++. ..|+||||+.|++++ ...|+|||+|.|.. .+.++|+||..+ |.+|.+|+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~-----~~~~pGQ~v~l~~~~-~~~r~ySi~s~~~~---~~~~~~~i~~~~~G~~s~~l~ 71 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP-----LPYLPGQYVNLRRAG-GLARSYSPTSLPDG---DNELEFHIRRKPNGAFSGWLG 71 (222)
T ss_pred CceeeecCCCEEEEEEecCCC-----CCcCCCCEEEEEcCC-CCceeeecCCCCCC---CCEEEEEEEeccCCccchHHH
Confidence 567889999999999997643 579999999999986 44589999999874 488999999975 68999999
Q ss_pred C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
+ +++||.|.+.||+|+++... ....++++|||||+||||+++++++++..+...+|.++|++|+.++++|+++|+
T Consensus 72 ~~~~~G~~v~i~gP~G~~~~~~----~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~ 147 (222)
T cd06194 72 EEARPGHALRLQGPFGQAFYRP----EYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALL 147 (222)
T ss_pred hccCCCCEEEEecCcCCeeccC----CCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHH
Confidence 7 79999999999999955432 124678999999999999999999988766778999999999999999999999
Q ss_pred HHHHC--CCEEEEEeeCCCCCCCc-cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 219 EWESS--GVKIVPVLSQPDGNWSG-ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 219 ~l~~~--~~~v~~~~s~~~~~~~~-~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|.+. ++++++++++++..|.. ..+.+.+.+ ....++..+|+|||++|++.+++.|.++|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vyicGp~~m~~~~~~~L~~~Gv 211 (222)
T cd06194 148 WLAREHPNFRYIPCVSEGSQGDPRVRAGRIAAHL-----PPLTRDDVVYLCGAPSMVNAVRRRAFLAGA 211 (222)
T ss_pred HHHHHCCCeEEEEEEccCCCCCcccccchhhhhh-----ccccCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 99873 78888888886554422 122222211 122356789999999999999999999987
No 37
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=5.3e-36 Score=278.99 Aligned_cols=216 Identities=23% Similarity=0.401 Sum_probs=180.9
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------------Cee
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GKP 105 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------------------------~~~ 105 (285)
.+++|++++.+++++++++|+.++... ..|+||||++|++++. ...
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~---~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEE---VPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI 210 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCc---ccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence 379999999999999999999875322 4799999999998742 346
Q ss_pred eeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEE
Q 023223 106 TFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175 (285)
Q Consensus 106 ~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliA 175 (285)
|+|||+|.|.. ++.++|+||.. .|.+|.+|+++++||+|.+.||+|++| +. +..++++|||
T Consensus 211 R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~-----~~~~~ivlIA 281 (409)
T PRK05464 211 RAYSMANYPEE---KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFIG 281 (409)
T ss_pred eeeccCCCCCC---CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcE-ec-----CCCceEEEEE
Confidence 89999999974 67999999973 378999999999999999999999954 43 2457999999
Q ss_pred cCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHH
Q 023223 176 TGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFS 250 (285)
Q Consensus 176 gGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~ 250 (285)
|||||||+++|+++.+.. +...+++|+|++|+.++++|.++|++|..+ +++++++++++ ++.|.+..|++++.+.
T Consensus 282 gGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~ 361 (409)
T PRK05464 282 GGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLY 361 (409)
T ss_pred eccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHH
Confidence 999999999999987754 345789999999999999999999999874 88888888764 4678889999998776
Q ss_pred Hhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 251 RAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 251 ~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+... .....+..+|+|||+.|++++.+.|.++|+
T Consensus 362 ~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv 397 (409)
T PRK05464 362 ENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGV 397 (409)
T ss_pred HhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 5321 123356789999999999999999999987
No 38
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=1e-35 Score=261.36 Aligned_cols=207 Identities=16% Similarity=0.379 Sum_probs=174.6
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
.++|++++++++++++++++.+ ..|+||||+.|++++.+. ++||+++.+ ++.++|+||.. |.+|.+
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~-------~~~~pGQ~v~l~~~~~~~-~pySi~~~~-----~~~l~~~Vk~~-G~~S~~ 72 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD-------GPVKPGQFFEVSLPKYGE-APISVSGIG-----EGYIDLTIRRV-GKVTDE 72 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC-------CCCCCCcEEEEEecCCCc-cceecCCCC-----CCeEEEEEEeC-chhhHH
Confidence 5899999999999999998632 468999999999986443 689998853 67899999988 999999
Q ss_pred hhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHH
Q 023223 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDK 216 (285)
Q Consensus 138 L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~ 216 (285)
|+++++||+|.++||+|++|.++. ...++++|||||+||||+++|++++++.. ...+++|+|++|+.++++|+++
T Consensus 73 L~~l~~Gd~v~i~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~e 148 (261)
T TIGR02911 73 VFTLKEGDNLFLRGPYGNGFDVDN----YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKED 148 (261)
T ss_pred HHcCCCCCEEEEecCCCCCcccCc----cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHH
Confidence 999999999999999999776652 24579999999999999999999987643 3468999999999999999999
Q ss_pred HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|++|... .++..+++++.+.|.+..|++++.+.+. ...+..+..+|+|||++|++++++.|.++|+
T Consensus 149 L~~l~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~-~~~~~~~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 149 IAEWKGN-INLTLTLDEAEEDYKGNIGLVTKYIPEL-TLKDIEEVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred HHHHHhc-CcEEEEEcCCCCCCcCCeeccCHhHHhc-cCCCccceEEEEECCHHHHHHHHHHHHHcCC
Confidence 9999874 4566667777778888899999876552 2223456789999999999999999999986
No 39
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=1.9e-35 Score=256.73 Aligned_cols=218 Identities=25% Similarity=0.389 Sum_probs=180.8
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Cc
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GS 133 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~ 133 (285)
..++|++++.+++++++++|+.+.+.. ..+.|+||||+.|+++.. ...|+|||++.+. ++.++|+|+.++ |.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~----~~~l~~~i~~~~~G~ 76 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELR-DAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVPGGR 76 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccC-CCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC----CCcEEEEEEEcCCCc
Confidence 468899999999999999999865310 014799999999999743 4578999999886 458999999985 67
Q ss_pred chHHhh-CCCCCCEEEEEeecCCCcccCCCCCCC-CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPD-EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 134 ~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~-~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
+|.||+ ++++|+++.+.||+|. |.+.. + ..++++||||||||||++++++++++.....++.++|++|+.+++
T Consensus 77 ~s~~l~~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~~~~r~~~~~ 151 (241)
T cd06214 77 FSNWANDELKAGDTLEVMPPAGR-FTLPP----LPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASV 151 (241)
T ss_pred cchhHHhccCCCCEEEEeCCccc-cccCC----CCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEEEEeCCHHHh
Confidence 899997 7999999999999998 54542 2 468999999999999999999998876557789999999999999
Q ss_pred ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh---cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK---IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~---~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|.+++++|... ++++++++++++..|.+..|++.+.+..+.. ....++..+|+|||+.|++.+.+.|++.|+
T Consensus 152 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~ 230 (241)
T cd06214 152 IFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGV 230 (241)
T ss_pred hHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999999764 6788888888777787788998876544221 122356799999999999999999999986
No 40
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=8.3e-36 Score=277.37 Aligned_cols=217 Identities=23% Similarity=0.404 Sum_probs=180.9
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------------Ce
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GK 104 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------------------------~~ 104 (285)
..+++|++++.+++++++++|+.++... ..|+||||++|+++.. ..
T Consensus 129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~---~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (405)
T TIGR01941 129 KWECEVISNDNVATFIKELVLKLPDGES---VPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEET 205 (405)
T ss_pred eeeeEEEEcccccchhheEEEecCCCce---eeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcc
Confidence 3469999999999999999999875422 4799999999998732 34
Q ss_pred eeeeeecCCCCCCCCCCeEEEEEEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEE
Q 023223 105 PTFLAIASPPSFASASGAFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF 174 (285)
Q Consensus 105 ~~~~si~s~p~~~~~~~~l~l~Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vli 174 (285)
.|+|||+|.|.. ++.++|+||.. + |.+|.||+++++||+|.++||+|++| +. +..++++||
T Consensus 206 ~R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~-l~-----~~~~~lvlI 276 (405)
T TIGR01941 206 VRAYSMANYPAE---KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFI 276 (405)
T ss_pred ceeecCCCCCCC---CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCe-ec-----CCCCCEEEE
Confidence 689999999975 68999999973 3 78999999999999999999999954 43 245789999
Q ss_pred EcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHH
Q 023223 175 ATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAF 249 (285)
Q Consensus 175 AgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~ 249 (285)
|||+||||+++|+++.+.. +...+++|+|++|+.++++|.++|++|..+ +++++++++++ ++.|.+..|++++.+
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l 356 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVL 356 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHH
Confidence 9999999999999987653 446789999999999999999999999764 78888888864 467888999999877
Q ss_pred HHhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 250 SRAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 250 ~~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
.++.. .....+..+|+|||+.|++++.+.|.++|+
T Consensus 357 ~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv 393 (405)
T TIGR01941 357 YENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLGV 393 (405)
T ss_pred HHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 55321 123356789999999999999999999987
No 41
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=267.63 Aligned_cols=205 Identities=17% Similarity=0.239 Sum_probs=169.3
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~ 134 (285)
..+++|++++.++++++.++|+.+++ +.|+||||++|++++ ...|+|||+|.|.. ++.++|+||.++ |.+
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~~-----~~~~~GQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~I~~~~~G~~ 161 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPERP-----LRYRAGQHLVLWTAG-GVARPYSLASLPGE---DPFLEFHIDCSRPGAF 161 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCCc-----CCcCCCCEEEEecCC-CcccccccCcCCCC---CCeEEEEEEEcCCCcc
Confidence 35799999999999999999986432 689999999999864 45789999999864 688999999765 678
Q ss_pred hHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 135 s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
|.+|+++++||+|.+++|.|..|.++.. ...++++|||||||||||++|++++++.+...+++|+|++|+.++++|.
T Consensus 162 s~~l~~l~~Gd~v~l~~p~gg~~~~~~~---~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~ 238 (312)
T PRK05713 162 CDAARQLQVGDLLRLGELRGGALHYDPD---WQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLA 238 (312)
T ss_pred chhhhcCCCCCEEEEccCCCCceEecCC---CCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHhhhH
Confidence 9999999999999999999865655421 1457899999999999999999999877666789999999999999999
Q ss_pred HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|++|.++ ++++.++.++ .+++.+.+. .....+..+|+|||++|++++.+.|.++|+
T Consensus 239 ~el~~l~~~~~~~~~~~~~~~----------~~~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv 298 (312)
T PRK05713 239 EPLAALAGRHPQLSVELVTAA----------QLPAALAEL--RLVSRQTMALLCGSPASVERFARRLYLAGL 298 (312)
T ss_pred HHHHHHHHHCCCcEEEEEECc----------chhhhhhhc--cCCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 999999874 7888776653 233333321 122345789999999999999999999987
No 42
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=1.4e-35 Score=263.28 Aligned_cols=202 Identities=20% Similarity=0.338 Sum_probs=168.7
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
++|+++++++++++.++|+.++. ...|+||||++|+++..+.+++|||++.+.. ++.++|+||.. |..|++|
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~rpySias~~~~---~~~i~l~vk~~-G~~T~~L 73 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRV----AKKAKPGQFVIVRIDEKGERIPLTIADYDRE---KGTITIVFQAV-GKSTRKL 73 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchh----hccCCCCeEEEEEeCCCCCceeeEeeEEcCC---CCEEEEEEEeC-CcHHHHH
Confidence 57999999999999999987542 2478999999999986666789999997754 78999999998 9999999
Q ss_pred hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (285)
Q Consensus 139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (285)
+++++||+| .+.||+|++|..+ ..+++++||||+||||++++++++.+. ..+++++|++|+.++++|.++|
T Consensus 74 ~~l~~Gd~v~~i~GP~G~~~~~~------~~~~~llIaGGiGiaPl~~l~~~l~~~--~~~v~l~~g~r~~~d~~~~~el 145 (281)
T PRK06222 74 AELKEGDSILDVVGPLGKPSEIE------KFGTVVCVGGGVGIAPVYPIAKALKEA--GNKVITIIGARNKDLLILEDEM 145 (281)
T ss_pred hcCCCCCEEeeEEcCCCCCcccC------CCCeEEEEeCcCcHHHHHHHHHHHHHC--CCeEEEEEecCCHHHhhcHHHH
Confidence 999999999 7999999977543 357899999999999999999998653 3589999999999999999999
Q ss_pred HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCC-CcEEEEECchhHHHHHHHHHHhcCC
Q 023223 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|... +.. . .+++|.+..|++++.+.+. ..+.+ ...+|+|||+.|++.+.+.|.+.|+
T Consensus 146 ~~~~~~---~~v-~--~~d~~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv 205 (281)
T PRK06222 146 KAVSDE---LYV-T--TDDGSYGRKGFVTDVLKEL--LESGKKVDRVVAIGPVIMMKFVAELTKPYGI 205 (281)
T ss_pred HhhCCe---EEE-E--cCCCCcCcccchHHHHHHH--hhcCCCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 988752 222 2 2456888899999876552 22222 4689999999999999999999987
No 43
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=3.8e-35 Score=292.27 Aligned_cols=229 Identities=20% Similarity=0.288 Sum_probs=190.1
Q ss_pred hccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEE
Q 023223 49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFL 126 (285)
Q Consensus 49 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~ 126 (285)
..+++..|.+++|++++.++++++.|+|+++.+. ..+.++|||||+|++... ...|+||++|.+.. .+.|+|+
T Consensus 627 ~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~--~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~---~g~lel~ 701 (888)
T PLN02252 627 VALNPREKIPCRLVEKISLSHDVRLFRFALPSED--HVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE---VGHFELV 701 (888)
T ss_pred cccccCceEEEEEEEEEEccCCeEEEEEEECCCc--ccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC---CCEEEEE
Confidence 4556788999999999999999999999987643 235789999999998633 34688999999865 6899999
Q ss_pred EEEe---------C-CcchHHhhCCCCCCEEEEEeecCCC-------cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223 127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRG-------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (285)
Q Consensus 127 Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~-------f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~ 189 (285)
||.+ + |.+|++|+++++|++|+|+||+|++ |.++.. +...++++||||||||||+++||++
T Consensus 702 VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~--~~~~~~vvmIAGGsGITPi~silr~ 779 (888)
T PLN02252 702 IKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGK--PKFAKKLAMLAGGTGITPMYQVIQA 779 (888)
T ss_pred EEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccc--cccCceEEEEecceehhHHHHHHHH
Confidence 9987 2 7899999999999999999999983 223210 1235799999999999999999999
Q ss_pred hhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCC-CCCCccccccchHHHHhhhcCCCCCcEEE
Q 023223 190 GFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPD-GNWSGETGYVQAAFSRAKKIFNPQGTGVV 264 (285)
Q Consensus 190 ~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~-~~~~~~~g~v~~~~~~~~~~~~~~~~~vy 264 (285)
++.. ++..++.|+|++|+.++++|+++|++|..+ +++++++++++. +.|.+..|++++.+.++.......+..+|
T Consensus 780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy 859 (888)
T PLN02252 780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL 859 (888)
T ss_pred HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence 8864 356799999999999999999999999874 689999999865 78999999999977664222223467899
Q ss_pred EECchhHHHH-HHHHHHhcCC
Q 023223 265 LCGQKQMAEV-CYCFCLEFSA 284 (285)
Q Consensus 265 iCGp~~m~~~-~~~~L~~~Gv 284 (285)
+|||++|++. ++..|.++|+
T Consensus 860 iCGPp~Mi~~av~~~L~~~G~ 880 (888)
T PLN02252 860 MCGPPPMIEFACQPNLEKMGY 880 (888)
T ss_pred EeCCHHHHHHHHHHHHHHcCC
Confidence 9999999995 7889999986
No 44
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=5.8e-35 Score=254.67 Aligned_cols=201 Identities=21% Similarity=0.359 Sum_probs=168.6
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
|++++.+++++++++|+.++. ...|+||||+.|++++. ...|+|||+|.|.. ++.++|+||.. |..|++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~---~~~l~l~v~~~-G~~s~~ 72 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI----AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE---EGTITLLYKVV-GKGTRL 72 (246)
T ss_pred CcceeEecCCeEEEEEeCcch----hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC---CCEEEEEEEEE-CcchHH
Confidence 567899999999999997652 26899999999999852 34689999998854 78999999998 888999
Q ss_pred hhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (285)
Q Consensus 138 L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (285)
|+++++||+|.++||+|.+|.++ +..++++||||||||||++++++++.+ ...+++|+|++|+.++++|+++|
T Consensus 73 l~~l~~Gd~v~i~gP~G~~~~~~-----~~~~~~vlIagGtGIaP~~s~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL 145 (246)
T cd06218 73 LSELKAGDELDVLGPLGNGFDLP-----DDDGKVLLVGGGIGIAPLLFLAKQLAE--RGIKVTVLLGFRSADDLFLVEEF 145 (246)
T ss_pred HhcCCCCCEEEEEecCCCCcCCC-----CCCCcEEEEecccCHHHHHHHHHHHHh--cCCceEEEEEccchhhhhhHHHH
Confidence 99999999999999999877664 246899999999999999999999875 34689999999999999999999
Q ss_pred HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|.. ++.. .+ .+.|.+..|++++.+.+. ..+..+..+|+|||+.|++++++.|++.|+
T Consensus 146 ~~l~~---~~~~-~~--~~~~~~~~g~v~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 146 EALGA---EVYV-AT--DDGSAGTKGFVTDLLKEL--LAEARPDVVYACGPEPMLKAVAELAAERGV 204 (246)
T ss_pred HhhCC---cEEE-Ec--CCCCCCcceehHHHHHHH--hhccCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 99853 2332 22 234777889999877663 223356799999999999999999999987
No 45
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=8.6e-35 Score=270.09 Aligned_cols=219 Identities=21% Similarity=0.347 Sum_probs=174.0
Q ss_pred CCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcC---CC---eeeeeeecCCCCCC-CCC
Q 023223 53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VG---KPTFLAIASPPSFA-SAS 120 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~---~~---~~~~~si~s~p~~~-~~~ 120 (285)
.+....++|++++.+++ ++++++|+.++. .+.|.||||++|++++ .+ ..|+|||+|.|... .+.
T Consensus 139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~----~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~ 214 (411)
T TIGR03224 139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH----PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGY 214 (411)
T ss_pred CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC----cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCC
Confidence 34456799999999954 999999998653 2689999999999874 22 35899999987421 112
Q ss_pred CeEEEEEEEeC---------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhh
Q 023223 121 GAFEFLVKSVA---------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191 (285)
Q Consensus 121 ~~l~l~Vk~~~---------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~ 191 (285)
+.++|+||+++ |.+|+||+++++||+|.++||+|++|.++. ...++++|||||||||||++|++++.
T Consensus 215 ~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~----~~~~~lllIagGtGIAP~~s~l~~~~ 290 (411)
T TIGR03224 215 NNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN----HPESSIMMICTGTGSAPMRAMTERRR 290 (411)
T ss_pred CEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCC----CCCCCEEEEecccCcHHHHHHHHHHH
Confidence 57999999984 789999999999999999999999886642 23578999999999999999999986
Q ss_pred cc---CCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEE
Q 023223 192 SS---KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVV 264 (285)
Q Consensus 192 ~~---~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vy 264 (285)
.. +...+++|+|++|+.++++|.++|++|....+++++++++.++ +..|++++.+.+... .....+..||
T Consensus 291 ~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~~~sr~~~---~~~g~V~d~l~~~~~~v~~ll~~~~~~vY 367 (411)
T TIGR03224 291 RRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPE---QPKRYVQDAIRERAADVAALLKDPNTYIY 367 (411)
T ss_pred HHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEEEeccCCc---cCcccHhhHHHHhHHHHHHHHhcCCcEEE
Confidence 42 3467999999999999999999999998877777778887543 247899887665321 1122457899
Q ss_pred EECchhHHHHHHHHHHhc
Q 023223 265 LCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 265 iCGp~~m~~~~~~~L~~~ 282 (285)
+|||+.|++.+.+.|.+.
T Consensus 368 iCGp~~M~~~v~~~L~~~ 385 (411)
T TIGR03224 368 ICGLKGMEEGVLDAFRDV 385 (411)
T ss_pred EECCHHHHHHHHHHHHHH
Confidence 999999988888877764
No 46
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=6e-35 Score=254.87 Aligned_cols=203 Identities=20% Similarity=0.308 Sum_probs=167.4
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
++|+++++++++++.++|+.++. ...|+||||++|+++..+..++|||+|.|.+ ++.++|+||.. |..|.+|
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~----~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~---~~~~~~~vk~~-G~~t~~l 72 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI----AKKAKPGQFVIVRADEKGERIPLTIADWDPE---KGTITIVVQVV-GKSTREL 72 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh----hccCCCCcEEEEEcCCCCCccceEeEEEcCC---CCEEEEEEEeC-CchHHHH
Confidence 47899999999999999997542 2579999999999976666788999998754 78999999998 8899999
Q ss_pred hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (285)
Q Consensus 139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (285)
.++++|+++ .++||+|.+|..+ ..++++|||||+||||++++++++.+. ..+++|+|++|+.++++|.++|
T Consensus 73 ~~l~~G~~v~~i~gP~G~~~~~~------~~~~~lliagG~GiaP~~~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el 144 (248)
T cd06219 73 ATLEEGDKIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIYPIAKALKEA--GNRVITIIGARTKDLVILEDEF 144 (248)
T ss_pred HhcCCCCEeeeeecCCCCCeecC------CCCeEEEEeCcccHHHHHHHHHHHHHc--CCeEEEEEEcCCHHHhhhHHHH
Confidence 999999999 6999999965432 357899999999999999999997653 3589999999999999999999
Q ss_pred HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|..+ +.. .+ ++.|.+..|++++.+.+.. ........+|+|||+.|++.+++.|.+.|+
T Consensus 145 ~~l~~~---~~~-~~--~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv 204 (248)
T cd06219 145 RAVSDE---LII-TT--DDGSYGEKGFVTDPLKELI-ESGEKVDLVIAIGPPIMMKAVSELTRPYGI 204 (248)
T ss_pred HhhcCe---EEE-Ee--CCCCCCccccchHHHHHHH-hccCCccEEEEECCHHHHHHHHHHHHHcCC
Confidence 999753 222 22 3457777889888765531 122344689999999999999999999887
No 47
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=6.8e-34 Score=248.30 Aligned_cols=207 Identities=24% Similarity=0.451 Sum_probs=177.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~ 136 (285)
.++|.+++.++++++.++|+.+... +.++|||||+|++++ ..+++||+++.+.. .+.++|.++..+ |.+|.
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~----~~~~pGQfv~l~~~~-~~~~P~si~~~~~~---~g~~~l~i~~~~~G~~T~ 80 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA----LTFKPGQFVMLRVPG-GVRRPYSLASAPDD---KGELELHIRVYEVGKVTK 80 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc----cccCCCcEEEEEeCC-CcEEEeeeccCCCc---CCcEEEEEEEEeCChHHH
Confidence 5899999999999999999987642 579999999999998 77789999999975 677777777655 79999
Q ss_pred HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223 137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (285)
Q Consensus 137 ~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (285)
++..+++||.|.++||+|++|..+. ..+++++||||||++|++++++++...+...+|+++|++|+.+++++.++
T Consensus 81 ~i~~~k~gd~i~v~GP~G~~~~~~~-----~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~e 155 (252)
T COG0543 81 YIFGLKEGDKIRVRGPLGNGFLREK-----IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDE 155 (252)
T ss_pred HHhhccCCCEEEEEcCCCCCccccc-----cCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHH
Confidence 9999999999999999999887652 45559999999999999999999976446689999999999999999999
Q ss_pred HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|++|..+ +++++++ ++|.|..|++...+.++ ....+...+|+|||+.|++.+.+.+.+.|+
T Consensus 156 l~~~~~~--~~~~~~~---~~~~G~~G~v~~~~~~~--~~~~~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 156 LEELAEK--EVHPVTD---DGWKGRKGFVTTDVLKE--LLDLEVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred HHHhhcC--cEEEEEC---CCCCccCcceeHHHHhh--hccccCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 9999876 5555555 78999999995544442 222267899999999999999999999885
No 48
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=4.1e-34 Score=249.92 Aligned_cols=201 Identities=19% Similarity=0.305 Sum_probs=169.2
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeCC
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAG 132 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~G 132 (285)
+|..++|+++++++++++.++|+.+. .+.|+||||+.|+++..+ .+|+|||++.| ++.++|+||.. |
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-----~~~l~l~Vk~~-G 71 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGEK-----VFDMKPGQFVMVWVPGVEPLLERPISISDID-----KNEITILYRKV-G 71 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCcc-----ccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-----CCEEEEEEEEc-C
Confidence 46789999999999999999999542 368999999999998642 47899999987 57899999987 8
Q ss_pred cchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 023223 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA 212 (285)
Q Consensus 133 ~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~ 212 (285)
..|++|+++++||+|.+.||+|+.|.++ ...+++++||||+||||++++++++... ..+++++|++|+.++++
T Consensus 72 ~~t~~l~~l~~G~~v~i~gP~G~~f~l~-----~~~~~~vlIagG~GiaP~~s~l~~~~~~--~~~v~l~~~~r~~~d~~ 144 (250)
T PRK00054 72 EGTKKLSKLKEGDELDIRGPLGNGFDLE-----EIGGKVLLVGGGIGVAPLYELAKELKKK--GVEVTTVLGARTKDEVI 144 (250)
T ss_pred hHHHHHhcCCCCCEEEEEcccCCCCCCC-----CCCCeEEEEeccccHHHHHHHHHHHHHc--CCcEEEEEEcCCHHHhh
Confidence 8999999999999999999999878764 2567999999999999999999998653 35799999999999999
Q ss_pred cHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 213 ~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|+++|+++.+ +.. .+ ++.|.+..|++++.+.+. . .....||+|||+.|++.+++.|.+.|+
T Consensus 145 ~~~el~~~~~----~~~-~~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~~l~~~Gv 205 (250)
T PRK00054 145 FEEEFAKVGD----VYV-TT--DDGSYGFKGFVTDVLDEL--D--SEYDAIYSCGPEIMMKKVVEILKEKKV 205 (250)
T ss_pred hHHHHHhcCC----EEE-Ee--cCCCCCcccchhHhHhhh--c--cCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 9999998542 221 22 356777889999877653 1 344589999999999999999999986
No 49
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=4.5e-34 Score=244.28 Aligned_cols=197 Identities=22% Similarity=0.332 Sum_probs=159.5
Q ss_pred cCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC--CCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhh-CCCC
Q 023223 67 AAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-GLKK 143 (285)
Q Consensus 67 ~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~--~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~-~l~~ 143 (285)
+..++++++|+.+++ .+.|+|||||.|++++ ....|+|||++.|.. ++.++|+||.. |.+|.+|+ ++++
T Consensus 5 ~~~~~~~i~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~-G~~t~~l~~~l~~ 76 (216)
T cd06198 5 EVRPTTTLTLEPRGP----ALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP---DGRLRFTIKAL-GDYTRRLAERLKP 76 (216)
T ss_pred EecceEEEEEeeCCC----CCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC---CCeEEEEEEeC-ChHHHHHHHhCCC
Confidence 345788999986553 1579999999999986 355789999999864 57999999998 88999999 8999
Q ss_pred CCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC
Q 023223 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS 223 (285)
Q Consensus 144 Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~ 223 (285)
||+|.++||+|. |.++. ..++++|||||+||||++++++++++.+...+++++|++|+.++++|+++|++|..+
T Consensus 77 G~~v~i~gP~G~-~~~~~-----~~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~ 150 (216)
T cd06198 77 GTRVTVEGPYGR-FTFDD-----RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA 150 (216)
T ss_pred CCEEEEECCCCC-Ccccc-----cCceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHh
Confidence 999999999998 76652 368999999999999999999999876666899999999999999999999999876
Q ss_pred -CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 224 -GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 224 -~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+++++++.++ ...|.+..+.+ .+ .....++..+|+|||+.|++.+++.|.+.|+
T Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~vyicGp~~m~~~v~~~l~~~Gv 205 (216)
T cd06198 151 AGVVLHVIDSP-SDGRLTLEQLV----RA--LVPDLADADVWFCGPPGMADALEKGLRALGV 205 (216)
T ss_pred cCeEEEEEeCC-CCcccchhhhh----hh--cCCCcCCCeEEEECcHHHHHHHHHHHHHcCC
Confidence 5777665543 33333222222 11 1223456799999999999999999999987
No 50
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=7.6e-34 Score=253.03 Aligned_cols=211 Identities=21% Similarity=0.340 Sum_probs=168.9
Q ss_pred CCCeeeeEEEEEeecC----CCeEEEEEECCCCC--cccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEE
Q 023223 53 TTVWTPTPLAEISPAA----ESLFHVSIDISDAP--DIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFL 126 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~----~~~~~l~l~~~~~~--~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~ 126 (285)
...+.+++|++++.++ ++++.|+|+.++.. +.....|+||||+.|..++....|+|||+|.|. ++.++|+
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~~~R~YSias~p~----~g~l~l~ 117 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSDVPRFYSLASSSS----DGFLEIC 117 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCCCCceEecCCCCC----CCeEEEE
Confidence 5578899999999999 59999999987521 111367999999999877666679999999985 7899999
Q ss_pred EEEeC-CcchHHhhCCCCCCEEEEEe-ecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEc
Q 023223 127 VKSVA-GSTAEVLCGLKKGDVVEISQ-VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYG 204 (285)
Q Consensus 127 Vk~~~-G~~s~~L~~l~~Gd~v~i~g-P~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~ 204 (285)
||.++ |.+|.+|+++++||+|.+.+ |.|. |.+. +..++++|||||||||||++|+++.. ...+++|+|+
T Consensus 118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-----~~~~~lvlIAgGtGIaP~~s~l~~~~---~~~~v~L~~g 188 (289)
T cd06201 118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-----KGAAPVILIGAGTGIAPLAGFIRANA---ARRPMHLYWG 188 (289)
T ss_pred EEeCCCccchhhHhhCCCcCEEEEEeccCCC-ccCC-----CCCCCEEEEecCcCHHHHHHHHHhhh---ccCCEEEEEE
Confidence 99865 68999999999999999985 6665 7653 24678999999999999999999852 4568999999
Q ss_pred cCCcc-ccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECchhHHHHHHHH
Q 023223 205 ARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEVCYCF 278 (285)
Q Consensus 205 ~r~~~-~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp~~m~~~~~~~ 278 (285)
+|+.+ +++|+++|++|..+ ++++..+++++. ..|++++.+...... ...++..+|+|||+.|++.+.+.
T Consensus 189 ~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~ 263 (289)
T cd06201 189 GRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAV 263 (289)
T ss_pred ecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHH
Confidence 99985 89999999999875 567777787643 257777655432111 11246789999999999999988
Q ss_pred HHh
Q 023223 279 CLE 281 (285)
Q Consensus 279 L~~ 281 (285)
|.+
T Consensus 264 L~~ 266 (289)
T cd06201 264 LEE 266 (289)
T ss_pred HHH
Confidence 876
No 51
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=1.1e-33 Score=246.13 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=162.1
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEc--CCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~--~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
|++++.+++++++++|+.++. ...|+||||+.|+++ +....|+|||++.|.+ ++.++|+||.. |.+|+||
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~---~~~l~l~i~~~-G~~t~~l 72 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA----ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE---EGTISLLVEIR-GPKTKLI 72 (243)
T ss_pred CceEEEecCCEEEEEEEccch----hhcCCCCCeEEEecCCCCCceeeeeEeeecCCC---CCEEEEEEEEc-CchHHHH
Confidence 467899999999999997643 257999999999997 3346789999999864 78999999987 8899999
Q ss_pred hCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 139 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
+++++||+|.++||+|++|..+ +..++++||||||||||++++++++.+. ..+++++|++|+.++++|.++|+
T Consensus 73 ~~~~~G~~l~i~gP~G~~~~~~-----~~~~~~lliagGtGiap~~~~l~~~~~~--~~~v~l~~~~r~~~d~~~~~el~ 145 (243)
T cd06192 73 AELKPGEKLDVMGPLGNGFEGP-----KKGGTVLLVAGGIGLAPLLPIAKKLAAN--GNKVTVLAGAKKAKEEFLDEYFE 145 (243)
T ss_pred HhCCCCCEEEEEccCCCCCccC-----CCCCEEEEEeCcccHHHHHHHHHHHHHC--CCeEEEEEecCcHHHHHHHHHHH
Confidence 9999999999999999865432 2467999999999999999999998754 46899999999999999999999
Q ss_pred HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
++. ..+ .+.+ ++.|.+..|++++.... ........+|+|||+.|++.+++.|.+.|
T Consensus 146 ~~~---~~~-~~~~--~~~~~~~~g~v~~~~~~---~~~~~~~~v~icGp~~mv~~~~~~l~~~g 201 (243)
T cd06192 146 LPA---DVE-IWTT--DDGELGLEGKVTDSDKP---IPLEDVDRIIVAGSDIMMKAVVEALDEWL 201 (243)
T ss_pred hhc---CeE-EEEe--cCCCCccceeechhhhh---hhcccCCEEEEECCHHHHHHHHHHHHhhc
Confidence 883 122 2333 34677778888765221 22234468999999999999999999874
No 52
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=2.7e-33 Score=242.28 Aligned_cols=191 Identities=22% Similarity=0.325 Sum_probs=160.0
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
.+|.+++++++++++++|+.+ ..|+||||+.|++++.. .++|||++.| +.++|+||.. |.+|+||
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~-------~~~~pGQ~v~l~~~~~~-~~~~Si~s~~------~~l~~~v~~~-G~~s~~L 65 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD-------FDFKPGQFVMVWVPGVD-EIPMSLSYID------GPNSITVKKV-GEATSAL 65 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC-------CCCCCCceEEEEeCCCC-cceeEEecCC------CeEEEEEEec-ChHHHHH
Confidence 368999999999999999852 37999999999997644 3789999987 4799999997 9999999
Q ss_pred hCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 139 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
+++++||+|.++||+|.+|.++ .++++|||||+||||++++++++... .++.++|++|+.++++|+++|+
T Consensus 66 ~~l~~Gd~v~i~gP~G~~f~~~-------~~~~vliAgGtGitP~~sil~~~~~~---~~i~l~~~~r~~~d~~~~~eL~ 135 (233)
T cd06220 66 HDLKEGDKLGIRGPYGNGFELV-------GGKVLLIGGGIGIAPLAPLAERLKKA---ADVTVLLGARTKEELLFLDRLR 135 (233)
T ss_pred HhcCCCCEEEEECcCCCCccCC-------CCeEEEEecCcChHHHHHHHHHHHhc---CCEEEEEecCChHHChhHHHHh
Confidence 9999999999999999877552 57899999999999999999998754 7899999999999999999999
Q ss_pred HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++ .++.++. ++.|.+..|++++.+.+. . ......+|+|||++|++.+.+.|++.|+
T Consensus 136 ~~----~~~~~~~---~~~~~~~~g~~~~~l~~~--~-~~~~~~vyicGp~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 136 KS----DELIVTT---DDGSYGFKGFVTDLLKEL--D-LEEYDAIYVCGPEIMMYKVLEILDERGV 191 (233)
T ss_pred hC----CcEEEEE---eCCCCcccceehHHHhhh--c-ccCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 82 1232222 235777789998866553 2 2344689999999999999999999886
No 53
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=2.3e-33 Score=247.16 Aligned_cols=201 Identities=22% Similarity=0.400 Sum_probs=163.1
Q ss_pred CeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhh
Q 023223 70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLC 139 (285)
Q Consensus 70 ~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~ 139 (285)
++++++|+.++.. ...|.||||+.|.+++...+|+|||+|.|... ++.++|+||..+ |.+|.+|+
T Consensus 16 ~v~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~--~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~ 90 (267)
T cd06182 16 STRHLEFDLSGNS---VLKYQPGDHLGVIPPNPLQPRYYSIASSPDVD--PGEVHLCVRVVSYEAPAGRIRKGVCSNFLA 90 (267)
T ss_pred ceEEEEEecCCCC---cCccCCCCEEEEecCCCCCCeeEeecCCCCCC--CCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence 7999999987521 26899999999999876668999999998621 489999999874 77899999
Q ss_pred CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhc----cCCCCcEEEEEccCCc-cccccH
Q 023223 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS----SKERSDVRLYYGARNL-KRMAYQ 214 (285)
Q Consensus 140 ~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~----~~~~~~v~l~~~~r~~-~~~~~~ 214 (285)
++++||.|.+.||+|..|.++. +..+++|||||||||||+++|+++++. .+...+++|+|++|+. ++++|+
T Consensus 91 ~lk~Gd~v~v~~p~G~~f~l~~----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~ 166 (267)
T cd06182 91 GLQLGAKVTVFIRPAPSFRLPK----DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR 166 (267)
T ss_pred hCCCCCEEEEEEecCCcccCCC----CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence 9999999999999995587753 336799999999999999999999886 2356789999999999 899999
Q ss_pred HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECchh-HHHHHHHHHHhc
Q 023223 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQKQ-MAEVCYCFCLEF 282 (285)
Q Consensus 215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~~-m~~~~~~~L~~~ 282 (285)
++|.+|... +++++.++++++.. ..|++++.+.+..... ..++..||+|||+. |++.+.+.|.++
T Consensus 167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLNEGAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHhcCCEEEEECCcccchHHHHHHHHHH
Confidence 999999985 68888888875432 3567776554321110 11345899999999 999999999876
No 54
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=3.6e-33 Score=287.79 Aligned_cols=228 Identities=19% Similarity=0.322 Sum_probs=189.6
Q ss_pred hhccCCCCeeeeEEEEEe---ecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCe
Q 023223 48 AVRQDTTVWTPTPLAEIS---PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGA 122 (285)
Q Consensus 48 ~~~~~~~~~~~~~V~~~~---~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~ 122 (285)
...+++..|.+++|.+++ +++++++.++|+++++. ..+.|.|||||.|+++.. ...|+||++|.|.. .+.
T Consensus 906 ~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~--~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~---~~~ 980 (1167)
T PTZ00306 906 KYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGAL--QRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD---LGV 980 (1167)
T ss_pred CcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcc--cccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC---CCe
Confidence 455678899999999997 56889999999997542 236899999999998633 34689999999964 688
Q ss_pred EEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC---------CcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc
Q 023223 123 FEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR---------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS 193 (285)
Q Consensus 123 l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~---------~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~ 193 (285)
++|+||...|.+|.+|+++++||+|+++||+|. .|.++ +...++++|||||||||||++|++++++.
T Consensus 981 i~l~Vr~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~----~~~~~~ivlIAGGtGItP~~sml~~~l~~ 1056 (1167)
T PTZ00306 981 ISILARGDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFR----GHVIRKLALIAGGTGVAPMLQIIRAALKK 1056 (1167)
T ss_pred EEEEEEcCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeec----cCCCceEEEEECCccHhHHHHHHHHHHhC
Confidence 999999755899999999999999999998773 24343 13457899999999999999999998865
Q ss_pred C---CCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEEC
Q 023223 194 K---ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG 267 (285)
Q Consensus 194 ~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCG 267 (285)
+ ...+++|+|++|+.++++|+++|++|..+ +|+++++++++++.|.+..|++++.+.++.......+..+|+||
T Consensus 1057 ~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCG 1136 (1167)
T PTZ00306 1057 PYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICG 1136 (1167)
T ss_pred cccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeC
Confidence 3 24689999999999999999999999874 59999999998888988899999876653222233567899999
Q ss_pred chhHHHHHHHHHHhcCC
Q 023223 268 QKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 268 p~~m~~~~~~~L~~~Gv 284 (285)
|+.|++.+++.|.++|+
T Consensus 1137 P~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1137 PPVMQRAVKADLLALGY 1153 (1167)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999999987
No 55
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=6.2e-33 Score=241.69 Aligned_cols=195 Identities=22% Similarity=0.355 Sum_probs=156.0
Q ss_pred CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC------CcchHHhhC-C
Q 023223 69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA------GSTAEVLCG-L 141 (285)
Q Consensus 69 ~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~------G~~s~~L~~-l 141 (285)
+++++++|+.++. ...|+||||++|.+++...+|+|||+|.|. ++.++|+||..+ |.+|++|++ +
T Consensus 16 ~~v~~l~l~~~~~----~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~----~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~ 87 (245)
T cd06200 16 APLWRLRLTPPDA----GAQWQAGDIAEIGPRHPLPHREYSIASLPA----DGALELLVRQVRHADGGLGLGSGWLTRHA 87 (245)
T ss_pred CceEEEEEecCCC----CCCccCCcEEEecCCCCCCCcceEeccCCC----CCEEEEEEEEeccCCCCCeeechhhhhCC
Confidence 3699999997642 268999999999987545679999999986 678999999975 458999986 6
Q ss_pred CCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHH
Q 023223 142 KKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEW 220 (285)
Q Consensus 142 ~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l 220 (285)
++||+|.+.||.|..|.++ +..++++|||||||||||++|++++...+ ..+++|+|++|+.+ +++|.++|++|
T Consensus 88 ~~Gd~v~i~gp~gg~F~~~-----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-~~~~~l~~g~r~~~~d~~~~~el~~~ 161 (245)
T cd06200 88 PIGASVALRLRENPGFHLP-----DDGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCREELEAW 161 (245)
T ss_pred CCCCEEEEEecCCCcccCC-----CCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCeEEEEecCCccccHhHHHHHHHH
Confidence 8999999999887668664 24578999999999999999999987543 35799999999984 89999999999
Q ss_pred HHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223 221 ESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE 281 (285)
Q Consensus 221 ~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~ 281 (285)
..+ +++++.++++++. ..|++++.+.+..... ...+..+|+|||+ +|++++++.|.+
T Consensus 162 ~~~~~~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 162 QAAGHLARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred HHCCCcceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence 875 5677777876432 3678877665432111 0135789999999 999999998865
No 56
>PRK05802 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=247.57 Aligned_cols=214 Identities=11% Similarity=0.128 Sum_probs=165.0
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
..+.+++|++++.++++++.++|+.+++. ....++|||||+|++++.+ ..|+|||++.+.+ ++.++|+||..
T Consensus 62 ~~~~~~~I~~~~~~t~dv~~l~l~~p~~~--~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~---~g~l~l~ik~~- 135 (320)
T PRK05802 62 RKTYECKIIKKENIEDNLIILTLKVPHKL--ARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE---ENIIKVAIEIR- 135 (320)
T ss_pred cccEeEEEEEEEEecCCEEEEEEECCchh--hhccCCCCceEEEEEcCCCCEeEEeeEecccCCC---CCEEEEEEEec-
Confidence 34567999999999999999999976531 1235799999999997543 3589999999864 78999999997
Q ss_pred CcchHHhhCCCCCCEEEEEeecCCC-cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223 132 GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~gP~G~~-f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~ 210 (285)
|.+|++|+++++||+|.++||+|++ |.+.... +...+++++||||+||||++++++++++.+ .+++++|++|+.++
T Consensus 136 G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~-~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--~~v~li~g~r~~~~ 212 (320)
T PRK05802 136 GVKTKKIAKLNKGDEILLRGPYWNGILGLKNIK-STKNGKSLVIARGIGQAPGVPVIKKLYSNG--NKIIVIIDKGPFKN 212 (320)
T ss_pred ChhHHHHhcCCCCCEEEEeCCCCcCcCCccccc-ccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence 9999999999999999999999887 4443111 124568999999999999999999987654 48999999999999
Q ss_pred cccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh--cCC
Q 023223 211 MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE--FSA 284 (285)
Q Consensus 211 ~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~--~Gv 284 (285)
++|.++|++|..+.. +...++....++ +.+|.+.+.+.+ .+...||+|||+.|++.+.+.|.+ .||
T Consensus 213 ~~~~~el~~~~~~~~-~~~~~ddG~~~~-~~~g~v~~~l~~------~~~~~vy~CGP~~M~k~v~~~l~~~~~~i 280 (320)
T PRK05802 213 NFIKEYLELYNIEII-ELNLLDDGELSE-EGKDILKEIIKK------EDINLIHCGGSDILHYKIIEYLDKLNEKI 280 (320)
T ss_pred HHHHHHHHHhhCceE-EEEecccCCCCc-cccchHHHHhcC------CCCCEEEEECCHHHHHHHHHHHhhhcCCc
Confidence 999999999876422 211122211122 234566655433 123679999999999999999987 565
No 57
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=2e-32 Score=233.10 Aligned_cols=197 Identities=19% Similarity=0.306 Sum_probs=156.8
Q ss_pred EEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCC--cchHHhh
Q 023223 62 AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLC 139 (285)
Q Consensus 62 ~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G--~~s~~L~ 139 (285)
++++.+++++++++|+.++...+ ..|+||||+.|++++ ...|+|||++.|.+ .+.++|+||.+++ ..|.||+
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~pGQ~~~l~~~~-~~~r~ySi~s~~~~---~~~l~~~v~~~~~g~~~s~~l~ 74 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPL--PAFEPGAHIDVHLPN-GLVRQYSLCGDPAD---RDRYRIAVLREPASRGGSRYMH 74 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcC--CCCCCCceEEEEcCC-CCceeeeccCCCCC---CCEEEEEEEeccCCCchHHHHH
Confidence 36788999999999998665321 379999999999986 45689999999874 5899999999863 3799997
Q ss_pred C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
+ +++||+|.++||+|. |.+.. ..++++|||+|+||||++++++++... ..++.++|++|+.++++|.++|+
T Consensus 75 ~~~~~Gd~v~i~gP~g~-f~~~~-----~~~~~v~ia~GtGiap~~~il~~~~~~--~~~v~l~~~~r~~~~~~~~~~l~ 146 (211)
T cd06185 75 ELLRVGDELEVSAPRNL-FPLDE-----AARRHLLIAGGIGITPILSMARALAAR--GADFELHYAGRSREDAAFLDELA 146 (211)
T ss_pred hcCCCCCEEEEcCCccC-CcCCC-----CCCcEEEEeccchHhHHHHHHHHHHhC--CCCEEEEEEeCCCcchhHHHHHh
Confidence 4 899999999999997 76642 457899999999999999999998653 46899999999999999999999
Q ss_pred HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|...++++. .+... ....+.+.+.+ ...+..+|+|||+.|++++++.|.++|+
T Consensus 147 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~-----~~~~~~vyicGp~~m~~~~~~~l~~~gv 200 (211)
T cd06185 147 ALPGDRVHLH--FDDEG-----GRLDLAALLAA-----PPAGTHVYVCGPEGMMDAVRAAAAALGW 200 (211)
T ss_pred hhcCCcEEEE--ECCCC-----CccCHHHHhcc-----CCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 9974455544 33221 12233333322 1235789999999999999999999997
No 58
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=100.00 E-value=5.9e-32 Score=231.88 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=148.1
Q ss_pred EEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------------------CeeeeeeecCCCCCCCCCCeEE
Q 023223 63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------GKPTFLAIASPPSFASASGAFE 124 (285)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------------------~~~~~~si~s~p~~~~~~~~l~ 124 (285)
+++.+++++.+++|+.+++.. .+.|+|||||.|++++. ...|+|||+|.|....+.+.++
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~ 79 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDV--VGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFE 79 (220)
T ss_pred cceecccceeEEEEEecCCcc--ccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEE
Confidence 567899999999999876532 37899999999998742 2358899999996411127999
Q ss_pred EEEEEeCCcchHHhhCCC--C---CCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCc
Q 023223 125 FLVKSVAGSTAEVLCGLK--K---GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSD 198 (285)
Q Consensus 125 l~Vk~~~G~~s~~L~~l~--~---Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~ 198 (285)
|+||.. |.+|++|++.. . |++|.+.||+|. |.+... ..+..++++|||||+||||+++|++++++.. ...+
T Consensus 80 l~vk~~-G~~T~~L~~~~~~~~~~G~~v~v~gP~G~-f~~~~~-~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~ 156 (220)
T cd06197 80 ITVRKK-GPVTGFLFQVARRLREQGLEVPVLGVGGE-FTLSLP-GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWD 156 (220)
T ss_pred EEEEeC-CCCCHHHHHhhhcccCCCceEEEEecCCc-ccCCcc-cccCCceEEEEecccchhhHHHHHHHHHhcccCCCc
Confidence 999998 99999998743 3 999999999997 766521 0124678999999999999999999987543 3578
Q ss_pred EEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHH
Q 023223 199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCF 278 (285)
Q Consensus 199 v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~ 278 (285)
|+|+|++|+.++++|.++|.++.+..+.+....+ ..+|+|||++|++++.+.
T Consensus 157 v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~~~ 208 (220)
T cd06197 157 ITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFIT----------------------------SEVYLCGPPALEKAVLEW 208 (220)
T ss_pred EEEEEEecchhhHHHHHHHHhccCCceEEEEEEe----------------------------ccEEEECcHHHHHHHHHH
Confidence 9999999999999999999887642112111100 179999999999999999
Q ss_pred HHhcCC
Q 023223 279 CLEFSA 284 (285)
Q Consensus 279 L~~~Gv 284 (285)
+.+.+|
T Consensus 209 ~~~~~~ 214 (220)
T cd06197 209 LEGKKV 214 (220)
T ss_pred hhhcee
Confidence 987654
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=4.8e-31 Score=262.78 Aligned_cols=202 Identities=20% Similarity=0.369 Sum_probs=169.9
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
++|++++.++++++.++|+.++. ...|+||||++|++++.+.+++|||++.+.. ++.++|+||.+ |.+|.+|
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~----~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~---~g~i~~~vk~v-G~~T~~L 73 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLI----AKSRKPGQFVIVRVGEKGERIPLTIADADPE---KGTITLVIQEV-GLSTTKL 73 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCch----hccCCCCeeEEEEeCCCCCeeEEEeeeeCCC---CCEEEEEEEEc-CchHHHH
Confidence 57999999999999999986532 2579999999999987677789999999864 78999999998 9999999
Q ss_pred hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (285)
Q Consensus 139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (285)
+++++||.| .+.||+|++|..+ ..++++|||||+||||++++++++.+.+ .+++++|++|+.++++|.++|
T Consensus 74 ~~l~~Gd~v~~v~GP~G~~~~~~------~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~l~~g~r~~~~l~~~~el 145 (752)
T PRK12778 74 CELNEGDYITDVVGPLGNPSEIE------NYGTVVCAGGGVGVAPMLPIVKALKAAG--NRVITILGGRSKELIILEDEM 145 (752)
T ss_pred hcCCCCCEeCeEeCCCCCCccCC------CCCeEEEEECCEeHHHHHHHHHHHHHCC--CeEEEEeccCCHHHhhhHHHH
Confidence 999999999 7999999977543 2478999999999999999999987643 589999999999999999999
Q ss_pred HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|..+ +++ .+ +++|.|..|++++.+.+. .... +...+|+|||+.|++.+.+.|.++|+
T Consensus 146 ~~~~~~---~~~-~t--~dg~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv 205 (752)
T PRK12778 146 RESSDE---VII-MT--DDGSYGRKGLVTDGLEEV--IKRETKVDKVFAIGPAIMMKFVCLLTKKYGI 205 (752)
T ss_pred HhhcCe---EEE-EE--CCCCCCCcccHHHHHHHH--hhcCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 998652 222 22 457888999999876553 2222 23579999999999999999999887
No 60
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.1e-31 Score=230.13 Aligned_cols=204 Identities=20% Similarity=0.291 Sum_probs=171.0
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe---eeeeeecCCCCCCCCCCeEEEEEEEeCC
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK---PTFLAIASPPSFASASGAFEFLVKSVAG 132 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~---~~~~si~s~p~~~~~~~~l~l~Vk~~~G 132 (285)
...++|+..+..+.+++.++.....+ ..+++|||..++++..+- ++||||+++.. .++++|.||.. |
T Consensus 215 ~y~~~vt~~~r~~~~t~eit~~l~~~-----~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~----~sel~FsIK~L-G 284 (438)
T COG4097 215 PYLGKVTAPQRGNVDTLEITIGLQGP-----WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE----GSELRFSIKAL-G 284 (438)
T ss_pred ccceEEechhhcCcchheeecccCCc-----ccccCCceEEEEeccccccCCCCCeeeeeCCC----CceEEEEehhh-h
Confidence 34688999999999999999887654 348999999999997653 78999999987 56899999998 9
Q ss_pred cchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 133 STAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 133 ~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
+.|+-|.+ +++|+++++.||+|. |..++ ...+.|+||||+||||++|+++++..+++..+|.|+|+.|+.++.
T Consensus 285 D~Tk~l~dnLk~G~k~~vdGPYG~-F~~~~-----g~~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~ 358 (438)
T COG4097 285 DFTKTLKDNLKVGTKLEVDGPYGK-FDFER-----GLNTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEA 358 (438)
T ss_pred hhhHHHHHhccCCceEEEecCcce-eeccc-----CCcccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchh
Confidence 99988885 999999999999998 88875 334499999999999999999999887788999999999999999
Q ss_pred ccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 212 AYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 212 ~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
.|.+|+++++++ ++.++...| ...|++.....+. .++. ....||+|||.+|++.++..|++.++
T Consensus 359 ~y~~eLr~~~qkl~~~~lHiiDS-------s~~g~l~~e~ler--~~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~ 425 (438)
T COG4097 359 LYAEELRALAQKLPNVVLHIIDS-------SKDGYLDQEDLER--YPDRPRTRSVFFCGPIKMMDSLRRDLKKQNV 425 (438)
T ss_pred HHHHHHHHHHhcCCCeEEEEecC-------CCCCccCHHHhhc--cccccCcceEEEEcCHHHHHHHHHHHHHcCC
Confidence 999999999996 555555222 2457777655552 2232 23489999999999999999999876
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.1e-29 Score=255.87 Aligned_cols=214 Identities=16% Similarity=0.263 Sum_probs=170.7
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGST 134 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~ 134 (285)
.+..++|++++.++++++.++|+.++. ...|+||||++|++...+..++|||++.+.. ++.|+|+||.+ |..
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~----~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~---~g~i~l~Vk~v-G~~ 718 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMV----ARSAQAGQFVRVLPWEKGELIPLTLADWDAE---KGTIDLVVQGM-GTS 718 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCc----cccCCCCceEEEEeCCCCCEEeEEccCCCCC---CCEEEEEEEee-ccH
Confidence 467899999999999999999987542 2579999999999876666789999998754 78999999998 888
Q ss_pred hHHhhCCCCCCEEE-EEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223 135 AEVLCGLKKGDVVE-ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (285)
Q Consensus 135 s~~L~~l~~Gd~v~-i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (285)
|.+|+++++||.|. |.||+|++|.++. ....++++|||||+||||+++|++++++.+ .+|+++|++|+.++++|
T Consensus 719 T~~L~~lk~Gd~l~~I~GPlG~~f~~~~---~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--~~V~li~G~Rs~edl~~ 793 (944)
T PRK12779 719 SLEINRMAIGDAFSGIAGPLGRASELHR---YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFW 793 (944)
T ss_pred HHHHhcCCCcCEEeeeecCCCCCcCCcc---ccCCCcEEEEEccEeHHHHHHHHHHHHHCC--CCEEEEEEeCCHHHhhh
Confidence 99999999999995 9999999876542 112468999999999999999999987543 58999999999999988
Q ss_pred HHHHH---HHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcC--CC--CCcEEEEECchhHHHHHHHHHHhcC
Q 023223 214 QDKFK---EWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF--NP--QGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 214 ~~~l~---~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~--~~--~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
.++++ +|... .++++.. + +++|.|..|++++.+.+..... .. ....+|+|||+.|++.+.+.|.++|
T Consensus 794 ~del~~L~~la~~~~~~~~v~~t-t--ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 794 TGDDERVGKLKAEFGDQLDVIYT-T--NDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE-e--cCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 87654 45442 3444433 2 4567888999998765431111 11 1357999999999999999999998
Q ss_pred C
Q 023223 284 A 284 (285)
Q Consensus 284 v 284 (285)
|
T Consensus 871 v 871 (944)
T PRK12779 871 V 871 (944)
T ss_pred C
Confidence 7
No 62
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.97 E-value=1.8e-29 Score=218.65 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=151.1
Q ss_pred EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---------------------CeeeeeeecCCCCCCCC
Q 023223 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------GKPTFLAIASPPSFASA 119 (285)
Q Consensus 61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---------------------~~~~~~si~s~p~~~~~ 119 (285)
|++++++++++++|+|+.++... ...|.||||+.|.++.. ...|.|||++.+..
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~--- 75 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAG--FPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE--- 75 (235)
T ss_pred CceeEecCCCEEEEEEecCcccc--CCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC---
Confidence 57899999999999999865321 15789999999999753 23588999998754
Q ss_pred CCeEEEEEEEeC--CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCC
Q 023223 120 SGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197 (285)
Q Consensus 120 ~~~l~l~Vk~~~--G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~ 197 (285)
++.++|.||.++ |..|+||+++++||+|.+.||+|.++ +. ...++++|||+|+||+|+++|++++.+ ..
T Consensus 76 ~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~-~~-----~~~~~~vlia~GtGi~p~~~il~~~~~---~~ 146 (235)
T cd06193 76 AGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFL-PP-----PDADWYLLAGDETALPAIAAILEELPA---DA 146 (235)
T ss_pred CCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCC-CC-----CCcceEEEEeccchHHHHHHHHHhCCC---CC
Confidence 789999998875 67999999999999999999999944 43 245789999999999999999999753 26
Q ss_pred cEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHH
Q 023223 198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYC 277 (285)
Q Consensus 198 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~ 277 (285)
+++++|++++.+++++.+++ .+++++++.+++... +..+.. .... ......+..+|+|||++|++.+++
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~-----~~~~~~~~~~~~~~~--~~~~~~---~~~~-~~~~~~~~~vyicGp~~mv~~v~~ 215 (235)
T cd06193 147 RGTALIEVPDAADEQPLPAP-----AGVEVTWLHRGGAEA--GELALL---AVRA-LAPPAGDGYVWIAGEAGAVRALRR 215 (235)
T ss_pred eEEEEEEECCHHHccccCCC-----CCcEEEEEeCCCCCc--chhHHH---HHhc-ccCCCCCeEEEEEccHHHHHHHHH
Confidence 89999999998766543332 267777766543321 222211 1111 122334679999999999999999
Q ss_pred HHHhc-CC
Q 023223 278 FCLEF-SA 284 (285)
Q Consensus 278 ~L~~~-Gv 284 (285)
.|.+. |+
T Consensus 216 ~l~~~~g~ 223 (235)
T cd06193 216 HLREERGV 223 (235)
T ss_pred HHHHccCC
Confidence 99864 65
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=4.9e-29 Score=253.17 Aligned_cols=202 Identities=19% Similarity=0.318 Sum_probs=167.9
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
++|++++.++++++.++|+.++. ...|+|||||+|++++.+.+++|||++.+.. .+.|+|.||.+ |..|.+|
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~----a~~~~PGQFV~l~~~~~~errplSIa~~~~~---~g~i~l~vk~v-G~~T~~L 73 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDV----AASAEPGHFVMLRLYEGAERIPLTVADFDRK---KGTITMVVQAL-GKTTREM 73 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCc----ccCCCCCeeEEEEeCCCCeeEEEEecCcCCC---CCEEEEEEEec-CcHHHHH
Confidence 57999999999999999987653 2689999999999977667789999997754 78999999998 8999998
Q ss_pred -hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223 139 -CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (285)
Q Consensus 139 -~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (285)
.++++||.| .+.||+|.+|..+ ..++++|||||+||||+++|++++.+.+ .+++++|++|+.++++|.++
T Consensus 74 ~~~lk~Gd~l~~v~GPlG~~~~~~------~~~~vllVaGGiGIAPl~s~~r~l~~~g--~~v~li~g~R~~~~l~~~de 145 (1006)
T PRK12775 74 MTKFKAGDTFEDFVGPLGLPQHID------KAGHVVLVGGGLGVAPVYPQLRAFKEAG--ARTTGIIGFRNKDLVFWEDK 145 (1006)
T ss_pred HhcCCCCCEEeeeecCCCCCCCCC------CCCeEEEEEEhHHHHHHHHHHHHHHhCC--CcEEEEEeCCChHHcccHHH
Confidence 589999999 7999999976543 3578999999999999999999986543 57999999999999999999
Q ss_pred HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|..+... +++ .+ +++|.|..|++++.+.+. ........+|+|||+.|++.+.+.+.+.||
T Consensus 146 l~~~~~~---~~v-~t--ddgs~G~~G~vt~~l~~~--l~~~~~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 146 FGKYCDD---LIV-CT--DDGSYGKPGFVTAALKEV--CEKDKPDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred HHhhcCc---EEE-EE--CCCCCCCCCChHHHHHHH--hccCCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence 9887642 222 22 456888899999877663 222233579999999999999999999887
No 64
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.96 E-value=9e-29 Score=210.55 Aligned_cols=221 Identities=24% Similarity=0.430 Sum_probs=187.4
Q ss_pred cCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC----------------------------
Q 023223 51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------------- 102 (285)
Q Consensus 51 ~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---------------------------- 102 (285)
..-..| .++|+++.+.+.=+..+.|.+++... ..|+||-|+++.+|..
T Consensus 130 fgvkkW-ectViSNdN~ATFIKEL~laip~g~~---vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~ 205 (410)
T COG2871 130 FGVKKW-ECTVISNDNKATFIKELKLAIPEGEE---VPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSK 205 (410)
T ss_pred cCccce-eEEEEeCCchhhhhhhheeeCCCCCc---cccCCCceEEEecCCccccccccCCChhHhcchhhhchheeecc
Confidence 344557 57888888888778889999987754 5799999999999831
Q ss_pred ---CeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCC
Q 023223 103 ---GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169 (285)
Q Consensus 103 ---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~ 169 (285)
...|-||++|.|.+ -+.+.|-|+... |.+|+|+.+|++||+|.|+||+|.+|-- +...
T Consensus 206 v~e~~~rAYSmAsYPeE---~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaK------dtda 276 (410)
T COG2871 206 VDEPIIRAYSMASYPEE---KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAK------DTDA 276 (410)
T ss_pred ccHHHHHHhhhhcChhh---cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhc------cCCC
Confidence 00244899999986 799999998752 7899999999999999999999997643 3678
Q ss_pred eEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccc
Q 023223 170 TVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGY 244 (285)
Q Consensus 170 ~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~ 244 (285)
.+|||.||.|.+|++|-|-..+.+ .+.+++.+.||+|+..+++|++++++++.+ ||+++.++|+| +++|++..|+
T Consensus 277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgF 356 (410)
T COG2871 277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGF 356 (410)
T ss_pred ceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhH
Confidence 999999999999999988777644 568899999999999999999999999986 89999999975 6799999999
Q ss_pred cchHHHHh--hhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 245 VQAAFSRA--KKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 245 v~~~~~~~--~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+...+.+. +.+..+++..+|+|||+-|..++.+.|.++||
T Consensus 357 ihnv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGV 398 (410)
T COG2871 357 IHNVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGV 398 (410)
T ss_pred HHHHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCc
Confidence 98877653 24566789999999999999999999999997
No 65
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=6.8e-28 Score=205.08 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=140.8
Q ss_pred EeecC-CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhh
Q 023223 64 ISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC 139 (285)
Q Consensus 64 ~~~~~-~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~ 139 (285)
++.+. ++++.++|..+.. ..|+||||+.|+++.. .+.|+|||++.+... .+.++|+||..+|.+++.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~~-----~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~--~~~i~~~vk~~~G~~t~~~~ 76 (210)
T cd06186 4 VELLPDSDVIRLTIPKPKP-----FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDE--QDTLSLIIRAKKGFTTRLLR 76 (210)
T ss_pred EEEecCCCEEEEEEecCCC-----CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCC--CCEEEEEEEecCChHHHHHH
Confidence 34445 8999999987632 6899999999999965 357899999998620 28999999998788888777
Q ss_pred CCC------CCCEEEEEeecCCCc-ccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC----CCCcEEEEEccCCc
Q 023223 140 GLK------KGDVVEISQVMGRGF-AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----ERSDVRLYYGARNL 208 (285)
Q Consensus 140 ~l~------~Gd~v~i~gP~G~~f-~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~----~~~~v~l~~~~r~~ 208 (285)
+++ .|+.+.+.||+|..+ .. ...++++|||||+||||+++++++++... ...+|+|+|++|+.
T Consensus 77 ~~~~~~~~~~~~~v~v~GP~G~~~~~~------~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~ 150 (210)
T cd06186 77 KALKSPGGGVSLKVLVEGPYGSSSEDL------LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDR 150 (210)
T ss_pred HHHhCcCCCceeEEEEECCCCCCccCh------hhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCH
Confidence 776 899999999999854 22 25789999999999999999999998654 46789999999999
Q ss_pred ccc-ccHHHHHH---HHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 209 KRM-AYQDKFKE---WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 209 ~~~-~~~~~l~~---l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
+++ +|.++|.+ +.... ++..++++ +|+|||.+|++.++..+.+.
T Consensus 151 ~~~~~~~~~l~~~~~~~~~~-~~~i~~T~-----------------------------v~~CGp~~~~~~~~~~~~~~ 198 (210)
T cd06186 151 EDLEWFLDELRAAQELEVDG-EIEIYVTR-----------------------------VVVCGPPGLVDDVRNAVAKK 198 (210)
T ss_pred HHhHHHHHHHHhhhhccCCc-eEEEEEee-----------------------------EEEECchhhccHHHHHHhhc
Confidence 984 89999975 22111 34444443 99999999999999887643
No 66
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.95 E-value=2.8e-27 Score=216.82 Aligned_cols=183 Identities=22% Similarity=0.408 Sum_probs=147.4
Q ss_pred cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhCC-CCCCEEEEEeecCCC
Q 023223 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCGL-KKGDVVEISQVMGRG 156 (285)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~l-~~Gd~v~i~gP~G~~ 156 (285)
..+.+|||+.+..+ ..+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++ ++||.|.+.+|.|..
T Consensus 130 ~~~~~gq~l~l~~~--~~~R~YSIaSsp~~--~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~ 205 (360)
T cd06199 130 ARLTAEELLDLLRP--LQPRLYSIASSPKA--VPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPH 205 (360)
T ss_pred CCCCHHHHHHhCcC--CCCcceeeccCccc--CCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCCC
Confidence 57899999999865 57899999999963 147899999875 38899999985 699999999866645
Q ss_pred cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeC
Q 023223 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQ 233 (285)
Q Consensus 157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~ 233 (285)
|.+.. +...+++|||+||||||+++++++.+......+++|+||+|+. ++++|++||++|... +++++.++|+
T Consensus 206 F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr 281 (360)
T cd06199 206 FRLPE----DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSR 281 (360)
T ss_pred cCCCC----CCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 87752 3467999999999999999999998765567889999999997 699999999999975 4678888998
Q ss_pred CCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223 234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE 281 (285)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~ 281 (285)
+.. ..+|+++.+.+..... ..++..+|+|||+ .|+++++++|.+
T Consensus 282 ~~~----~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 282 DQA----EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred CCC----CCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHH
Confidence 643 3578888776532111 1245789999999 899999888865
No 67
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.94 E-value=1.2e-26 Score=224.87 Aligned_cols=184 Identities=22% Similarity=0.368 Sum_probs=149.4
Q ss_pred cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCC
Q 023223 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG 156 (285)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~ 156 (285)
..+.||||+.+..+ ..+|+|||+|+|... ++.++|+|+.+ .|.+|.||++ +++||+|.+.+|.|..
T Consensus 367 ~~~~~gq~v~ll~~--~~~R~YSIaSsp~~~--~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 442 (597)
T TIGR01931 367 ADLDAEQLISLLRP--LTPRLYSISSSQSEV--GDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDN 442 (597)
T ss_pred CCCCHHHHHHhCcc--cCCceeeeccCcccC--CCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCc
Confidence 47899999999976 578999999998531 57899999865 3889999997 9999999999877655
Q ss_pred cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeC
Q 023223 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQ 233 (285)
Q Consensus 157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~ 233 (285)
|.++. +..++++|||+|||||||++++++....+..++++||||+|+ .++++|++||+.|..++ .++..++|+
T Consensus 443 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR 518 (597)
T TIGR01931 443 FRLPE----DPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR 518 (597)
T ss_pred ccCCC----CCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence 87752 346789999999999999999999877666789999999999 77999999999999863 467778887
Q ss_pred CCCCCCccccccchHHHHhhhcC---CCCCcEEEEEC-chhHHHHHHHHHHhc
Q 023223 234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCG-QKQMAEVCYCFCLEF 282 (285)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCG-p~~m~~~~~~~L~~~ 282 (285)
.. +.++||++.+.+..... ..++..+|+|| |+.|++.+.+.|.+.
T Consensus 519 d~----~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i 567 (597)
T TIGR01931 519 DQ----AEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDI 567 (597)
T ss_pred CC----CCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHH
Confidence 42 35789999877632110 11457899999 889999998888653
No 68
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.94 E-value=1.7e-26 Score=213.50 Aligned_cols=184 Identities=22% Similarity=0.412 Sum_probs=144.7
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe-----------CCcchHHhhCCCCCCEEEE--EeecC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEI--SQVMG 154 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i--~gP~G 154 (285)
....||++.+. + ...+|+|||+|+|... ++.++|+|+.+ .|.+|.||+++++||+|.+ ++|.|
T Consensus 146 ~~~~~~~l~~~-p-~l~~R~YSIaSsp~~~--~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g 221 (384)
T cd06206 146 ALPLATFLAML-P-PMRPRQYSISSSPLVD--PGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS 221 (384)
T ss_pred CCCHHHHHHhC-c-ccCCcceeeccCccCC--CCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence 46789999997 3 3578999999998531 46677777763 3779999999999999996 57888
Q ss_pred CCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC-CCEEE
Q 023223 155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS-GVKIV 228 (285)
Q Consensus 155 ~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~~~v~ 228 (285)
. |.+.. +..++++|||||||||||++++++.... ....+++|+||+|+. ++++|++||++|... ++++.
T Consensus 222 ~-F~l~~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~ 296 (384)
T cd06206 222 A-FRPPS----DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVR 296 (384)
T ss_pred c-cCCCC----CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCeEEE
Confidence 6 76642 3467999999999999999999987532 234689999999999 799999999999874 68899
Q ss_pred EEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
+++|+++++ ..+|+++.+.+.... ...++..+|+|||++|++++.+.|.+.+
T Consensus 297 ~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~ 351 (384)
T cd06206 297 RAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREVLKRIY 351 (384)
T ss_pred EEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHHHHHHH
Confidence 999876432 367888876543211 0125678999999999999999998764
No 69
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.94 E-value=5.6e-26 Score=209.99 Aligned_cols=171 Identities=23% Similarity=0.391 Sum_probs=138.8
Q ss_pred CCeeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeE
Q 023223 102 VGKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171 (285)
Q Consensus 102 ~~~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~ 171 (285)
...+|+|||+|+|.. +++.++|+|+.+ .|.+|+||+++++|++|.+.+|.|. |.+.. +..+++
T Consensus 161 ~l~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~-F~lp~----~~~~pl 233 (382)
T cd06207 161 LIKPRYYSISSSPLK--NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSS-FKLPK----DPKKPI 233 (382)
T ss_pred CCCCceeeecCCCcC--CCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCc-ccCCC----CCCCCE
Confidence 367899999999963 158899999976 2789999999999999999999997 87752 346799
Q ss_pred EEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223 172 LIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY 244 (285)
Q Consensus 172 vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~ 244 (285)
+|||+|||||||++++++.... ...++++|+||+|+. ++++|++||++|... .++++.++|+++. ..+|
T Consensus 234 ImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~y 309 (382)
T cd06207 234 IMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVY 309 (382)
T ss_pred EEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceE
Confidence 9999999999999999987532 356899999999998 899999999999986 4688888887543 3688
Q ss_pred cchHHHHhhh----cCCCCCcEEEEECchh-HHHHHHHHHHhcC
Q 023223 245 VQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEVCYCFCLEFS 283 (285)
Q Consensus 245 v~~~~~~~~~----~~~~~~~~vyiCGp~~-m~~~~~~~L~~~G 283 (285)
+++.+.+... ........+|+|||+. |++++.+.|.+.+
T Consensus 310 Vq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~ 353 (382)
T cd06207 310 VQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEIL 353 (382)
T ss_pred hHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHH
Confidence 8887655211 1222345899999998 9999999998765
No 70
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.93 E-value=5.3e-25 Score=204.26 Aligned_cols=173 Identities=19% Similarity=0.324 Sum_probs=137.7
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEeC----CcchHHhhCCC-----CCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSVA----GSTAEVLCGLK-----KGDVVEISQVMGRGFAVDRIQPPDEYPTVLI 173 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----G~~s~~L~~l~-----~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl 173 (285)
..+|+|||+|+|.. .++.++|+|+.++ |.+|+||++++ +|++|.+.++.+..|.++.. +...+++|
T Consensus 172 ~~~R~YSIsSsp~~--~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~---~~~~piIm 246 (398)
T cd06203 172 LQPRPYSIASSPLE--GPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPD---DLRRPIIM 246 (398)
T ss_pred CCCcceeecCCccc--CCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCc---CCCCCEEE
Confidence 56899999999963 1488999999875 78999999988 99999999843334877531 13579999
Q ss_pred EEcCcchhHHHHHHHHhhc------cCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223 174 FATGSGISPIRSLIESGFS------SKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY 244 (285)
Q Consensus 174 iAgGtGIaP~~sil~~~~~------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~ 244 (285)
||+|||||||++++++... ....++++||||+|+. ++++|++||++|... .+++.+++|+++++| +.++|
T Consensus 247 Ia~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k~y 325 (398)
T cd06203 247 VGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STPKY 325 (398)
T ss_pred EcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCcee
Confidence 9999999999999998764 2345789999999998 699999999999986 457888899876554 57899
Q ss_pred cchHHHHhhhc----CCCCCcEEEEECc-hhHHHHHHHHHHh
Q 023223 245 VQAAFSRAKKI----FNPQGTGVVLCGQ-KQMAEVCYCFCLE 281 (285)
Q Consensus 245 v~~~~~~~~~~----~~~~~~~vyiCGp-~~m~~~~~~~L~~ 281 (285)
|++.+.+.... ...++..+|+||| +.|.+++++.|.+
T Consensus 326 Vqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~ 367 (398)
T cd06203 326 VQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVD 367 (398)
T ss_pred cchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHH
Confidence 99987764221 1235688999999 5898999888864
No 71
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.93 E-value=6.3e-25 Score=204.20 Aligned_cols=170 Identities=25% Similarity=0.397 Sum_probs=134.4
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCe
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~ 170 (285)
.++|+|||+|+|... ++.++|+|+.+ .|.+|+||+++++||.|.+.++.+..|.++. +...+
T Consensus 175 l~pR~YSIsSsp~~~--~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~----~~~~p 248 (406)
T cd06202 175 LQPRYYSISSSPDMY--PGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE----DPSVP 248 (406)
T ss_pred cCCcccccCCCccCC--CCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC----CCCCC
Confidence 678999999999531 46778887654 3789999999999999999876554587753 34679
Q ss_pred EEEEEcCcchhHHHHHHHHhhc--------cCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCC
Q 023223 171 VLIFATGSGISPIRSLIESGFS--------SKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWS 239 (285)
Q Consensus 171 ~vliAgGtGIaP~~sil~~~~~--------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~ 239 (285)
++|||+|||||||++++++... .+..++++|+||+|+. ++++|++||++|.+. .+++++++|+.+.
T Consensus 249 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~--- 325 (406)
T cd06202 249 VIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPG--- 325 (406)
T ss_pred EEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCC---
Confidence 9999999999999999998532 1245799999999999 799999999999986 4568888998543
Q ss_pred ccccccchHHHHhhhc----CCCCCcEEEEECchhHHHHHHHHHHh
Q 023223 240 GETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAEVCYCFCLE 281 (285)
Q Consensus 240 ~~~g~v~~~~~~~~~~----~~~~~~~vyiCGp~~m~~~~~~~L~~ 281 (285)
...+||++.+.+.... ...++..+|+|||+.|++++++.|.+
T Consensus 326 ~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~ 371 (406)
T cd06202 326 KPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQR 371 (406)
T ss_pred CCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHH
Confidence 2468999987753211 12357899999999999998888764
No 72
>PLN02292 ferric-chelate reductase
Probab=99.92 E-value=7.7e-24 Score=205.75 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=151.1
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGST 134 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~ 134 (285)
..+++.+++.+++++.+++++.+.. ..++||||+.+.++.. .+.|+|||+|.|.. +++.++|+||.. |.+
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~-----~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~--~~~~l~l~IK~~-G~~ 396 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM-----LMYSPTSIMFVNIPSISKLQWHPFTITSSSKL--EPEKLSVMIKSQ-GKW 396 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC-----CCcCCCCeEEEEEccCCccceeeeEeeccCCC--CCCEEEEEEEcC-Cch
Confidence 4688999999999999999986542 5799999999999853 46799999998742 167899999987 888
Q ss_pred hHHhhC-CCCCCE-----EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEE
Q 023223 135 AEVLCG-LKKGDV-----VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYY 203 (285)
Q Consensus 135 s~~L~~-l~~Gd~-----v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~ 203 (285)
|++|++ ++.||. |.++||+|..+ .+. ...+++++||||+||||+++++++++++.. ..+++|+|
T Consensus 397 T~~L~~~l~~gd~i~~~~V~VeGPYG~~~-~~~----~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw 471 (702)
T PLN02292 397 STKLYHMLSSSDQIDRLAVSVEGPYGPAS-TDF----LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC 471 (702)
T ss_pred hHHHHHhCCCCCccccceEEEECCccCCc-ccc----ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEE
Confidence 887775 788884 57999999844 221 245799999999999999999999976432 26899999
Q ss_pred ccCCccccccHHHHH-------HHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC--CCcEEEEECchhH
Q 023223 204 GARNLKRMAYQDKFK-------EWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQM 271 (285)
Q Consensus 204 ~~r~~~~~~~~~~l~-------~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~vyiCGp~~m 271 (285)
++|+.+++.+.+++. ++++ .++++..+++++++... ..+..++.+.++...... ++..+.+|||+.-
T Consensus 472 ~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~ 548 (702)
T PLN02292 472 AFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGV-KESTGNMNIIKTLWFKPNLSDQPISPILGPNSW 548 (702)
T ss_pred EECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCC-cccccchhhhhhhcCCCCCCCCceEEEeCCCch
Confidence 999999998877554 2322 38888888888755432 222225555543222222 5789999999854
No 73
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.92 E-value=9.2e-25 Score=210.93 Aligned_cols=183 Identities=21% Similarity=0.338 Sum_probs=146.6
Q ss_pred cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCC
Q 023223 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG 156 (285)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~ 156 (285)
..+.+|||+.+..+ ..+|+|||+|+|.. .++.++|+|+.+ .|.+|.||++ +++|++|.+.+|.|..
T Consensus 370 ~~~~~~q~l~ll~~--l~pR~YSIaSsp~~--~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 445 (600)
T PRK10953 370 AQLDAEQLIGLLRP--LTPRLYSIASSQAE--VENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHNDN 445 (600)
T ss_pred CCCCHHHHHHhCCC--CCCeeeecccCCCC--CCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCCc
Confidence 36899999999876 57899999999953 157889987653 3678999985 9999999999988766
Q ss_pred cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCCC--EEEEEeeC
Q 023223 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQ 233 (285)
Q Consensus 157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~~--~v~~~~s~ 233 (285)
|.+.. +...+++|||+|||||||++++++....+...+++||||+|+ .++++|++||++|.+++. ++...+|+
T Consensus 446 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR 521 (600)
T PRK10953 446 FRLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR 521 (600)
T ss_pred ccCCC----CCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence 87752 356899999999999999999999877666789999999998 779999999999998753 57788887
Q ss_pred CCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223 234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE 281 (285)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~ 281 (285)
.+ +.++|||+.+.+..... ..++..+||||+. .|.+++++.|.+
T Consensus 522 d~----~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~ 569 (600)
T PRK10953 522 DQ----KEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLE 569 (600)
T ss_pred CC----CCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHH
Confidence 54 24789999777632211 0246789999996 688888877754
No 74
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.91 E-value=1.7e-23 Score=195.26 Aligned_cols=169 Identities=21% Similarity=0.373 Sum_probs=133.5
Q ss_pred CCeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCC---------------------CCCEEEEE
Q 023223 102 VGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLK---------------------KGDVVEIS 150 (285)
Q Consensus 102 ~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~---------------------~Gd~v~i~ 150 (285)
...+|+|||+|+|.. .++.++|+|+.+. |-+|+||+++. +||+|.+.
T Consensus 175 ~~~pR~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~ 252 (416)
T cd06204 175 RLQPRYYSISSSSKV--HPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVF 252 (416)
T ss_pred cCCCcceeeccCccC--CCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEE
Confidence 367899999999953 1578999998652 77899999866 79999999
Q ss_pred eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC--
Q 023223 151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS-- 223 (285)
Q Consensus 151 gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-- 223 (285)
.|.|. |.+.. +...+++|||+||||||+++++++.... ....+++|+||+|+. ++++|+++|++|...
T Consensus 253 ~~~g~-F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~ 327 (416)
T cd06204 253 VRRSN-FRLPT----KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGG 327 (416)
T ss_pred EecCC-CCCCC----CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 99996 87752 3468999999999999999999986432 135689999999998 799999999999875
Q ss_pred CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECchh-HHHHHHHHHHh
Q 023223 224 GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQKQ-MAEVCYCFCLE 281 (285)
Q Consensus 224 ~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~~-m~~~~~~~L~~ 281 (285)
+++++.++|++++ ..+|+++.+.+..... ..++..||+|||+. |++++.+.|.+
T Consensus 328 ~~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~ 385 (416)
T cd06204 328 LLELVTAFSREQP----KKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLE 385 (416)
T ss_pred ceEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHH
Confidence 5788888887543 4678888775432110 12457899999998 99999888865
No 75
>PRK06214 sulfite reductase; Provisional
Probab=99.91 E-value=3.4e-23 Score=196.51 Aligned_cols=169 Identities=22% Similarity=0.419 Sum_probs=129.0
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v 172 (285)
.++|+|||+|+|.. .++.++|+||.+ .|.+|+||+ .+++|++|.+.++.+.+|.+.. +...+++
T Consensus 314 l~pR~YSISSsP~~--~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~----~~~~PiI 387 (530)
T PRK06214 314 LQPRLYSISSSPKA--TPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPA----DPNTPII 387 (530)
T ss_pred CCcEEEEeccCCcC--CCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCC----CCCCCEE
Confidence 67899999999953 157899999875 278899998 6999999999763333477642 3457999
Q ss_pred EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccccccchHH
Q 023223 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF 249 (285)
Q Consensus 173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g~v~~~~ 249 (285)
|||+|||||||++++++.+..+...+++||||+|. .++++|++||++|...+ .+++.++|++. +.++|+++.+
T Consensus 388 mIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~----~~k~YVQ~~L 463 (530)
T PRK06214 388 MVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDG----EEKTYVQDRM 463 (530)
T ss_pred EEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCC----CCCCchhhHH
Confidence 99999999999999998765555678999999965 66899999999999864 45677788754 2367888876
Q ss_pred HHhhhc---CCCCCcEEEEECchh-HHHHHHHHHHh
Q 023223 250 SRAKKI---FNPQGTGVVLCGQKQ-MAEVCYCFCLE 281 (285)
Q Consensus 250 ~~~~~~---~~~~~~~vyiCGp~~-m~~~~~~~L~~ 281 (285)
.+.... ...++..+|||||.. |.+++++.|.+
T Consensus 464 ~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred HHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence 542211 112467899999965 65888887764
No 76
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.89 E-value=1.2e-21 Score=191.11 Aligned_cols=194 Identities=14% Similarity=0.197 Sum_probs=141.6
Q ss_pred EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
.+++++..+++++++++..+. .++|+||||+.+.++..+ +.|+|||+|.|.. +++.++|.||.. |+.++.
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~~-----~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~--~~~~l~~~IK~~-gG~T~~ 386 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKDP-----GLKYAPTSVIFMKIPSISRFQWHPFSITSSSNI--DDHTMSVIIKCE-GGWTNS 386 (722)
T ss_pred EEEEEEEecCCEEEEEEECCC-----CCCcCCCeeEEEEECCCCceeEEEEEeecCCCC--CCCeEEEEEEeC-CCchHH
Confidence 355666778889888887543 268999999999999643 5799999997632 167899999997 555555
Q ss_pred hhC-----CCCC------CEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEE
Q 023223 138 LCG-----LKKG------DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRL 201 (285)
Q Consensus 138 L~~-----l~~G------d~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l 201 (285)
|.+ +++| .++.++||+|. +..+. ...+++++||||+||||++++++++.+.++ ..+|.|
T Consensus 387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~-~s~~~----~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~L 461 (722)
T PLN02844 387 LYNKIQAELDSETNQMNCIPVAIEGPYGP-ASVDF----LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQL 461 (722)
T ss_pred HHHHHHhhccCCCCcccceEEEEECCccC-CCCCc----cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEE
Confidence 532 3345 37899999997 44332 246899999999999999999999985432 368999
Q ss_pred EEccCCccccccHHHHHH-----HHH-CCCEEEEEeeCCCCCCCccccccchHHHH-----hhhcCCCCCcEEEEECchh
Q 023223 202 YYGARNLKRMAYQDKFKE-----WES-SGVKIVPVLSQPDGNWSGETGYVQAAFSR-----AKKIFNPQGTGVVLCGQKQ 270 (285)
Q Consensus 202 ~~~~r~~~~~~~~~~l~~-----l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~-----~~~~~~~~~~~vyiCGp~~ 270 (285)
+|++|+.+++.|.+++.. +.+ .+++++.++++++... .++++.+.+ + ...+++...+.+||++.
T Consensus 462 Iw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~----~rl~~~i~~~~~~~~-~~~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 462 IYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPN----ATLRELLNQFSQVQT-VNFSTKCSRYAIHGLES 536 (722)
T ss_pred EEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCC----CchhhHhhccchhhh-cCCCCCCCceEEeCCCc
Confidence 999999999999988752 222 3788888888865432 244443332 2 12455778899999975
Q ss_pred H
Q 023223 271 M 271 (285)
Q Consensus 271 m 271 (285)
-
T Consensus 537 ~ 537 (722)
T PLN02844 537 F 537 (722)
T ss_pred h
Confidence 3
No 77
>PLN02631 ferric-chelate reductase
Probab=99.89 E-value=8e-22 Score=191.44 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=132.7
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcch
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s 135 (285)
.+++++++.+++++.++++..+.. .+++||||+.++++.. .+.|+|||+|.|.. +++.++|+||.. |..|
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~~-----~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~--~~~~L~~~IK~~-Gg~T 380 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTPG-----LHYTPTSILFLHVPSISKLQWHPFTITSSSNL--EKDTLSVVIRRQ-GSWT 380 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCCC-----CcCCCCceEEEEeccCCccceEEEEEeccCCC--CCCEEEEEEEcC-ChHH
Confidence 367788888899999999875332 5799999999999964 45799999998742 157899999986 8899
Q ss_pred HHhhC-CCC-CC--EEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEEccC
Q 023223 136 EVLCG-LKK-GD--VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGAR 206 (285)
Q Consensus 136 ~~L~~-l~~-Gd--~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~~~r 206 (285)
++|.+ ++. |+ +|.++||+|. +..+. ...+++++||||+||||+++++++++.+.. ..+++|+|++|
T Consensus 381 ~~L~~~l~~~g~~i~V~VeGPYG~-~~~~~----~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR 455 (699)
T PLN02631 381 QKLYTHLSSSIDSLEVSTEGPYGP-NSFDV----SRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK 455 (699)
T ss_pred HHHHHhhhcCCCeeEEEEECCCCC-CCCCc----CCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence 98875 654 45 6778999997 33321 256789999999999999999999975422 34799999999
Q ss_pred CccccccHHHHHH-------HHHCCCEEEEEeeCCC
Q 023223 207 NLKRMAYQDKFKE-------WESSGVKIVPVLSQPD 235 (285)
Q Consensus 207 ~~~~~~~~~~l~~-------l~~~~~~v~~~~s~~~ 235 (285)
+.+++.|.||++. +.+.+++++.++||++
T Consensus 456 ~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~ 491 (699)
T PLN02631 456 HYHDLAFLDLIFPLDISVSDISRLNLRIEAYITRED 491 (699)
T ss_pred CHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCC
Confidence 9999999999986 5556899999999864
No 78
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.1e-21 Score=187.54 Aligned_cols=168 Identities=23% Similarity=0.450 Sum_probs=140.4
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEeC---------CcchHHhhCCCC-CCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSVA---------GSTAEVLCGLKK-GDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~---------G~~s~~L~~l~~-Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v 172 (285)
.++|+|||+|++... .++++++|..+. |.+|.||+++.. ||.+.+....++.|.+.. +..++++
T Consensus 371 lkPR~YSIsSs~~~~--~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~----~~~~PiI 444 (587)
T COG0369 371 LKPRLYSIASSPGVS--PDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPE----DPETPII 444 (587)
T ss_pred CCCeeeEeccCCCCC--CCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCC----CCCCceE
Confidence 578999999999863 477888887664 678999998766 999999888886688763 3449999
Q ss_pred EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccccccchHH
Q 023223 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF 249 (285)
Q Consensus 173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g~v~~~~ 249 (285)
||+.|||||||++++++....+..++++||||+|+ ..+++|++|+++|..+| .++...+|+.+ ..+.|||+.+
T Consensus 445 MIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq----~~KiYVQd~l 520 (587)
T COG0369 445 MIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQ----EEKIYVQDRL 520 (587)
T ss_pred EEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecC----CCCccHHHHH
Confidence 99999999999999999988777779999999999 66999999999999986 56777888875 4578999988
Q ss_pred HHhhh----cCCCCCcEEEEEC-chhHHHHHHHHHHh
Q 023223 250 SRAKK----IFNPQGTGVVLCG-QKQMAEVCYCFCLE 281 (285)
Q Consensus 250 ~~~~~----~~~~~~~~vyiCG-p~~m~~~~~~~L~~ 281 (285)
.+... ..+ +...+|||| ...|.+.+.++|.+
T Consensus 521 re~~del~~~l~-~ga~~YVCGd~~~Ma~dV~~AL~~ 556 (587)
T COG0369 521 REQADELWEWLE-EGAHIYVCGDAKGMAKDVEEALLD 556 (587)
T ss_pred HHhHHHHHHHHH-CCCEEEEeCCCccchHHHHHHHHH
Confidence 87433 223 348999999 89999999999875
No 79
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.87 E-value=2.7e-22 Score=169.92 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=146.0
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe------eeeeeecCCCCCCCCCCeEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK------PTFLAIASPPSFASASGAFEFLV 127 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~------~~~~si~s~p~~~~~~~~l~l~V 127 (285)
..|.+++|.+.+.++.|+..+++...++ .+...+..|||||.+.....+. -+.||.++... .+.|+|.|
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~-~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~----rN~~R~sV 221 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDP-AFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTC----RNQFRISV 221 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCc-ceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhh----ccceeEEE
Confidence 3688999999999999999999986654 5666778999999998874432 23356666555 78999999
Q ss_pred EEeCC-cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEcc
Q 023223 128 KSVAG-STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA 205 (285)
Q Consensus 128 k~~~G-~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~ 205 (285)
|+..| -+|+++| ++++||.|.++.|-|+ |.+.+.. .....+++++|||+||||+++||+..+.-...+.+..+...
T Consensus 222 r~~A~G~VS~~~H~~~KVGD~v~~S~PAG~-F~~~r~~-~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~RP~~~~~~~ 299 (385)
T KOG3378|consen 222 RRVAGGVVSNFVHDNLKVGDIVGVSPPAGN-FVYKRSE-ENVNRPLLCFAGGIGITPLIPIIETALLCYSSRPFKQWLEQ 299 (385)
T ss_pred eehhchhhHHHhhccccccceeeccCCCcc-ceeehhh-hccCCceEEecCCcCccccHHHHHHHHhcCCCCcHHHHHHH
Confidence 99875 7899999 5999999999999999 6664422 12458999999999999999999997642222222111111
Q ss_pred CCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 206 r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
-+.+.-.+...-+.+..+ +.+=+++.+ .....+++.+.++ .+...+++|+|||..+|+.+...|.++|
T Consensus 300 ~~~K~k~~~K~~e~~~~E~s~~~~~IV~~-------~~~~iI~~~~L~~---~~~s~~DiY~~G~~~~M~~~~~~L~~L~ 369 (385)
T KOG3378|consen 300 LKLKYKENLKLKEFFSEESSVTKEQIVDE-------VMTRIINEEDLEK---LDLSECDIYMLGPNNYMRFVKQELVKLG 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhh-------hhhhhcCHHHhhh---cChhhCceeeeCcHHHHHHHHHHHHHhc
Confidence 111111111111111111 111111111 1223455555553 3557889999999999999999999998
Q ss_pred C
Q 023223 284 A 284 (285)
Q Consensus 284 v 284 (285)
+
T Consensus 370 ~ 370 (385)
T KOG3378|consen 370 V 370 (385)
T ss_pred C
Confidence 6
No 80
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.85 E-value=4.1e-21 Score=146.29 Aligned_cols=104 Identities=27% Similarity=0.530 Sum_probs=88.7
Q ss_pred EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--C-CEEEEEeeCCCCCCCccccccchHH
Q 023223 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAF 249 (285)
Q Consensus 173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~-~~v~~~~s~~~~~~~~~~g~v~~~~ 249 (285)
||||||||||++++++++++.+...+++|+|++|+.++++|+++|++|... + ++++.+ ++.+++|.+..|++++.+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~~ 79 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDLL 79 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHHH
Confidence 799999999999999999987788999999999999999999999999875 3 555554 666778889999999988
Q ss_pred HHhhhc--CCCCCcEEEEECchhHHHHHHH
Q 023223 250 SRAKKI--FNPQGTGVVLCGQKQMAEVCYC 277 (285)
Q Consensus 250 ~~~~~~--~~~~~~~vyiCGp~~m~~~~~~ 277 (285)
.+.... .+..+..+|+|||++|++++++
T Consensus 80 ~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 80 LEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred HHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 654222 3567889999999999999874
No 81
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.80 E-value=3.5e-19 Score=170.38 Aligned_cols=182 Identities=20% Similarity=0.385 Sum_probs=134.5
Q ss_pred CCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-----------CcchHHhhCCCCCCEEEEEeecCCC-c
Q 023223 90 RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRG-F 157 (285)
Q Consensus 90 ~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~~-f 157 (285)
.|++|+.=.+| -.++|+|||+|+|... .+.+.+++-.+. |-+|+||+++++|+.+....+.+.. |
T Consensus 408 pP~~~ll~~lp-~L~pR~YSIssS~~~~--~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~f 484 (645)
T KOG1158|consen 408 PPLPHLLELLP-RLQPRYYSISSSPKVH--PNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMF 484 (645)
T ss_pred CCHHHHHHhCc-cccccccccccCcccC--CCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccce
Confidence 45544322222 3789999999999764 455555554321 5679999999999999854455542 5
Q ss_pred ccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEEccCCcccc-ccHHHHHHHHHC--CCEEEE
Q 023223 158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGARNLKRM-AYQDKFKEWESS--GVKIVP 229 (285)
Q Consensus 158 ~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~~~r~~~~~-~~~~~l~~l~~~--~~~v~~ 229 (285)
.+. ++...+++||+.|||||||++++++.+.... ..-++||||+|+.+.. +|++|++++.+. ..++..
T Consensus 485 rlp----~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~ 560 (645)
T KOG1158|consen 485 RLP----SDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDV 560 (645)
T ss_pred ecC----CCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhhee
Confidence 443 3567899999999999999999999875421 2228999999999855 999999999765 457788
Q ss_pred EeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECchh-HHHHHHHHHHh
Q 023223 230 VLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEVCYCFCLE 281 (285)
Q Consensus 230 ~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~~-m~~~~~~~L~~ 281 (285)
.+||.+. +..-|||+.+.+... ....+++.+|+||... |.+.+.++|..
T Consensus 561 A~SReq~---~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 561 AFSREQT---PKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVR 614 (645)
T ss_pred eeeccCC---CCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHH
Confidence 8998753 457788887766432 2334689999999988 99999998875
No 82
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.78 E-value=4.8e-18 Score=127.34 Aligned_cols=94 Identities=28% Similarity=0.385 Sum_probs=81.3
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~ 134 (285)
+++|++++.++++++.++|+.+++.. ...|.||||+.|+++..+ ..|+|||++.+.. .+.++|+||.++ |.+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~--~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~---~~~~~~~ik~~~~G~~ 75 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQ--KLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD---KGYLEFAIKRYPNGRV 75 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTT--T-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS---SSEEEEEEEECTTSHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCc--ccccCcceEEEEEEccCCcceecceeEeeecCC---CCcEEEEEEeccCCHH
Confidence 57899999999999999999876532 367999999999999443 4789999999975 789999999996 589
Q ss_pred hHHhhCCCCCCEEEEEeecCCCc
Q 023223 135 AEVLCGLKKGDVVEISQVMGRGF 157 (285)
Q Consensus 135 s~~L~~l~~Gd~v~i~gP~G~~f 157 (285)
|+||+++++||+|.++||+|+ |
T Consensus 76 S~~L~~l~~Gd~v~i~gP~G~-f 97 (99)
T PF00970_consen 76 SRYLHQLKPGDEVEIRGPYGN-F 97 (99)
T ss_dssp HHHHHTSCTTSEEEEEEEESS-E
T ss_pred HHHHHhCCCCCEEEEEEcccc-c
Confidence 999999999999999999998 5
No 83
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.2e-17 Score=161.14 Aligned_cols=210 Identities=17% Similarity=0.295 Sum_probs=150.6
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcch
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s 135 (285)
.+++.++.-+++++.++++..+. .+.++||||+.|.+|.- .+.+||||+|+|+ ++.+.++||.. |++|
T Consensus 356 ~~~i~~~~llp~~vi~L~~~Kp~-----~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~----dd~lsvhIk~~-g~wT 425 (646)
T KOG0039|consen 356 NVKIAKVVLLPSDVLELIMSKPP-----GFKYKPGQYIFVNCPSLSKLEWHPFTITSAPE----DDFLSVHIKAL-GDWT 425 (646)
T ss_pred CceEEEEEEcCCCeEEEEEeCCC-----CCCCCCCCEEEEECccccccccCCceeecCCC----CCEEEEEEEec-CcHH
Confidence 47788999999999999998652 38999999999999954 6789999999994 89999999999 8887
Q ss_pred HHhhC-CC------------CCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC--------
Q 023223 136 EVLCG-LK------------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-------- 194 (285)
Q Consensus 136 ~~L~~-l~------------~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-------- 194 (285)
+.|.+ +. ..-++.|.||+|.+- -+- ...+.+++|++|+|+||+.|++++++.+.
T Consensus 426 ~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s-~d~----~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~ 500 (646)
T KOG0039|consen 426 EKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPS-QDV----FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP 500 (646)
T ss_pred HHHHHHHhhhcccccccccccCceEEEECCCCCCc-hhh----hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc
Confidence 77654 22 144799999999864 111 36788999999999999999999998432
Q ss_pred --------CCCcEEEEEccCCcccc-ccHHHHHHHHHC---C-CEEEEEeeCC----CCCCC------------------
Q 023223 195 --------ERSDVRLYYGARNLKRM-AYQDKFKEWESS---G-VKIVPVLSQP----DGNWS------------------ 239 (285)
Q Consensus 195 --------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~---~-~~v~~~~s~~----~~~~~------------------ 239 (285)
...++.++|.+|+..++ .|.+.+.+++.. + ++++...++. +..+.
T Consensus 501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~ 580 (646)
T KOG0039|consen 501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIV 580 (646)
T ss_pred cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccc
Confidence 23568999998887775 777777766642 2 3444444321 10000
Q ss_pred -c-----ccccc--chHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 240 -G-----ETGYV--QAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 240 -~-----~~g~v--~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
| .-||. .+.+.+...........||.|||+.|++.+++.+.+.
T Consensus 581 ~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~ 631 (646)
T KOG0039|consen 581 TGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDF 631 (646)
T ss_pred ccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 0 01222 2222221111111227999999999999999999875
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.74 E-value=1.4e-16 Score=158.47 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=104.5
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----CeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----~~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
..++|++++.++++++.++|+.+.. ...++||||++|+.++. ..+++|||++.+.+ .+.++|+++.+
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~i----A~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e---~g~It~i~rvV- 862 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLA----AKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE---KGLISFIVFEV- 862 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcch----hhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC---CCEEEEEEEEE-
Confidence 3689999999999999999986542 24689999999998532 25678999998764 78999999999
Q ss_pred CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEE
Q 023223 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~ 203 (285)
|..|+.|+++++||.+.+.||+|++|.+. ..+++++||||+|++| +.+++.+ .+.+|..+.
T Consensus 863 GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~------~~k~vLLVgGGVGiAp---Lak~Lk~--~G~~V~~~~ 923 (1028)
T PRK06567 863 GKSTSLCKTLSENEKVVLMGPTGSPLEIP------QNKKIVIVDFEVGNIG---LLKVLKE--NNNEVIFVT 923 (1028)
T ss_pred ChHHHHHhcCCCCCEEEEEcccCCCCCCC------CCCeEEEEEccccHHH---HHHHHHH--CCCeEEEEE
Confidence 99999999999999999999999999764 2468999999999997 4455532 344555555
No 85
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.67 E-value=4.7e-16 Score=141.62 Aligned_cols=163 Identities=24% Similarity=0.417 Sum_probs=124.5
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v 172 (285)
-+||.|||+|.|. .-.++++|-.+. |-+|+||++|++|++|.+.---|. +.++. +...+++
T Consensus 366 IrPR~fSIas~~~----~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~----~~~~PlI 436 (574)
T KOG1159|consen 366 IRPRAFSIASSPG----AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPS----DLNKPLI 436 (574)
T ss_pred cccceeeeccCCC----CCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCC----CCCCCeE
Confidence 3578999999998 555998886653 789999999999999998776665 55542 3478999
Q ss_pred EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHH
Q 023223 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSR 251 (285)
Q Consensus 173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~ 251 (285)
||+.||||||+++++.+..- +......||||+|+.+ |++|.++..++.... .+..+|+.++ .+-|||..+.+
T Consensus 437 mVGPGTGvAPfRa~i~er~~-q~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~--~~~AFSRDqe----~kvYVQh~i~e 509 (574)
T KOG1159|consen 437 MVGPGTGVAPFRALIQERIY-QGDKENVLFFGCRNKDKDFLYEDEWTELNKRA--FHTAFSRDQE----QKVYVQHKIRE 509 (574)
T ss_pred EEcCCCCcccHHHHHHHHHh-hccCCceEEEecccCCccccccchhhhhhcch--hhhhcccccc----cceeHHHHHHH
Confidence 99999999999999999764 3344458899999877 889998766665543 3446777654 46788888776
Q ss_pred hh----hcCCCCCcEEEEECch-hHHHHHHHHHHh
Q 023223 252 AK----KIFNPQGTGVVLCGQK-QMAEVCYCFCLE 281 (285)
Q Consensus 252 ~~----~~~~~~~~~vyiCGp~-~m~~~~~~~L~~ 281 (285)
.. ......+..+|+||+. .|-+++.++|.+
T Consensus 510 ~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~e 544 (574)
T KOG1159|consen 510 NGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIE 544 (574)
T ss_pred hhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHH
Confidence 32 2334467899999996 788888888765
No 86
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.50 E-value=7.9e-14 Score=112.90 Aligned_cols=112 Identities=18% Similarity=0.296 Sum_probs=72.8
Q ss_pred CCeEEEEEcCcchhHHHHHHHHhhccC-----CCCcEEEEEccCCcccc-ccHHHHHHHHH---C-CCEEEEEeeCCCCC
Q 023223 168 YPTVLIFATGSGISPIRSLIESGFSSK-----ERSDVRLYYGARNLKRM-AYQDKFKEWES---S-GVKIVPVLSQPDGN 237 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~~~~~-----~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~-~~~v~~~~s~~~~~ 237 (285)
+++++|||||+||||+++++++++... ...+|+|+|.+|+.+++ +|.++|.++.. . ++++.+++++....
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 468999999999999999999998533 36889999999999987 77866655544 3 78888888764321
Q ss_pred C-------------------------------Cccccccc--hHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH
Q 023223 238 W-------------------------------SGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC 279 (285)
Q Consensus 238 ~-------------------------------~~~~g~v~--~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L 279 (285)
. .-..||.+ +.+.+...........|++|||++|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 1 01122221 222221123345678999999999999998875
No 87
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.9e-10 Score=99.39 Aligned_cols=202 Identities=11% Similarity=0.104 Sum_probs=144.4
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCC-CcEEEEEEcCC----------------------Ceeeeeee
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRA-GQYLQLRVVDV----------------------GKPTFLAI 110 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~p-GQ~v~l~~~~~----------------------~~~~~~si 110 (285)
...+.++|..++++++++.+++|..++-... ....+ +|||.|.++.. ...|.|||
T Consensus 15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f--~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTi 92 (265)
T COG2375 15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGF--ASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTI 92 (265)
T ss_pred ccceEEEEEEEEecCCCeEEEEEeccccccc--ccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccccee
Confidence 4567899999999999999999997654322 12344 45999999843 11577999
Q ss_pred cCCCCCCCCCCeEEEEEEEe--CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHH
Q 023223 111 ASPPSFASASGAFEFLVKSV--AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188 (285)
Q Consensus 111 ~s~p~~~~~~~~l~l~Vk~~--~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~ 188 (285)
.+...+ .+++.+-+-.+ .|..+.|..++++||+|.|.||.|..+ . +...+.++||+--+++-.|..||+
T Consensus 93 R~~d~~---~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~-p-----~~~~~~~lLigDetAlPAIa~iLE 163 (265)
T COG2375 93 RAVDAA---AGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLV-P-----PEAADWYLLIGDETALPAIARILE 163 (265)
T ss_pred eeeccc---ccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCC-C-----CCCcceEEEeccccchHHHHHHHH
Confidence 876543 67776666665 368999999999999999999999833 2 247889999999999999999999
Q ss_pred HhhccCCCCcEEEEEccCCccccccHHHHHHHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEE
Q 023223 189 SGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLC 266 (285)
Q Consensus 189 ~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiC 266 (285)
++ ........+..+.+..+. ..+.. .++++.++...... ....++++..+ ...+ .+..++|.
T Consensus 164 ~l---p~~~~~~a~lev~d~ad~------~~l~~~~~l~~~Wl~r~~~~----~~~ll~~a~~~---~~~P~~~~~vwia 227 (265)
T COG2375 164 TL---PADTPAEAFLEVDDAADR------DELPSPDDLELEWLARDDAP----TEQLLAAALAQ---AALPAGDYYVWIA 227 (265)
T ss_pred hC---CCCCceEEEEEeCChHHh------hccCCCCceeEEEecCCCcc----chHHHHHHHhc---ccCCCCceEEEEe
Confidence 97 444555777777776653 12222 35666665543221 11223333333 2222 34799999
Q ss_pred CchhHHHHHHHHHHhc
Q 023223 267 GQKQMAEVCYCFCLEF 282 (285)
Q Consensus 267 Gp~~m~~~~~~~L~~~ 282 (285)
|..++++.+++.|++.
T Consensus 228 gE~~~v~~~Rk~L~~e 243 (265)
T COG2375 228 GEASAVKAIRKFLRNE 243 (265)
T ss_pred ccHHHHHHHHHHHhhh
Confidence 9999999999999886
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.06 E-value=1.6e-11 Score=92.98 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=6.2
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSVAGST 134 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~ 134 (285)
.++.+++.+.++++++++..+... +.|+||||+.|.++... +.++|||++.|. ++.++|+||.. |+.
T Consensus 4 ~~~~~v~~~~~~~v~i~i~~~~~~----~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~----~~~i~l~ik~~-g~~ 74 (105)
T PF08022_consen 4 VRIASVELLPDDVVEITIPKPSSP----FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE----DNSITLIIKAR-GGW 74 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCCEEEEEEECCCCC----CCCCCceEEEEEEcCcCcCcccccccEeeccCC----CCEEEEEEEeC-CCc
Confidence 467788888899999999865431 68999999999999643 788999999997 88999999998 777
Q ss_pred hHHhhCC--------CCCCEEEEEeecCC
Q 023223 135 AEVLCGL--------KKGDVVEISQVMGR 155 (285)
Q Consensus 135 s~~L~~l--------~~Gd~v~i~gP~G~ 155 (285)
|+.|.+. ..+-++.|.||||.
T Consensus 75 T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 75 TKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp ----------------------TTSTTSH
T ss_pred hHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 7766642 23457888999995
No 89
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.68 E-value=8.1e-08 Score=74.02 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=60.0
Q ss_pred EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC-----------------------eeeeeeecCCCCC
Q 023223 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----------------------KPTFLAIASPPSF 116 (285)
Q Consensus 60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~-----------------------~~~~~si~s~p~~ 116 (285)
+|++++.+++++++++|..++-..+ ....+|||+.|.++..+ ..|.||+.+....
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~--~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~ 78 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGF--PSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE 78 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT----S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT
T ss_pred CEEEEEECCCCEEEEEEECCCcccC--ccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC
Confidence 5899999999999999996543322 22579999999998431 3577999887654
Q ss_pred CCCCCeEEEEEEEeC--CcchHHhhCCCCCCEEEEEeecCC
Q 023223 117 ASASGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 117 ~~~~~~l~l~Vk~~~--G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
.+++.|-+-.+. |..+.|..++++||+|.|.||.|.
T Consensus 79 ---~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~ 116 (117)
T PF08021_consen 79 ---TGELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGS 116 (117)
T ss_dssp -----EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE--
T ss_pred ---CCEEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCC
Confidence 788988887775 579999999999999999999987
No 90
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=96.49 E-value=0.024 Score=43.63 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=63.4
Q ss_pred CeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchH
Q 023223 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248 (285)
Q Consensus 169 ~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~ 248 (285)
+.++|++--|++..+..|++++ ....+++.+.-+.+..+... |.. ..+++++++..... ......+.+.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~l---p~~~~~~v~iev~~~~d~~~---l~~--~~~~~v~wv~r~~~---~~~~~~l~~a 70 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEAL---PADAPGTVFIEVPDEADRQP---LPA--PAGVEVTWVPRDGP---AAQGSALADA 70 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS----TT-EEEEEEEESSGGG------------TEEEEEEEE-SS-----TT-HHHHHH
T ss_pred ceEEEEeccccHHHHHHHHHhC---CCCCeEEEEEEECChHhccc---CCC--CCCCEEEEEeCCCC---CchHHHHHHH
Confidence 5789999999999999999997 56677888888877776332 222 34677777666543 1111223333
Q ss_pred HHHhhhcCCCCCcEEEEECchhHHHHHHHHHH-hcCC
Q 023223 249 FSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL-EFSA 284 (285)
Q Consensus 249 ~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~-~~Gv 284 (285)
+.. ......+..++++|...+++.+++.|+ ++|+
T Consensus 71 l~~--~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~ 105 (119)
T PF04954_consen 71 LRD--LPLPAGDGYVWVAGEASAVRALRRHLREERGL 105 (119)
T ss_dssp HTT--S---SS-EEEEEEEEHHHHHHHHHHHHHH---
T ss_pred HHH--hhccCCCeEEEEEecHHHHHHHHHHHHHhhCC
Confidence 222 111246889999999999999999998 5454
No 91
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=85.10 E-value=1.2 Score=44.92 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=29.4
Q ss_pred ccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 244 ~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
..++.+.+.......++..|.+|||+.|.+++.+.|+..+
T Consensus 659 ~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~ 698 (722)
T PLN02844 659 NFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKS 698 (722)
T ss_pred CHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcc
Confidence 4455554432233457899999999999999999988765
No 92
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=80.70 E-value=1.7 Score=36.97 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=17.1
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
.++|+|||+|+|.. .++.++|+|..+.
T Consensus 177 l~PR~YSIsSS~~~--~p~~v~ltv~vv~ 203 (219)
T PF00667_consen 177 LQPRYYSISSSPLV--HPNKVHLTVSVVE 203 (219)
T ss_dssp ---EEEEB-S-TTT--STTEEEEEEEE-E
T ss_pred CCCcceeecccccC--CCCEEEEEEEEEE
Confidence 67899999999864 2688999998764
No 93
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=78.87 E-value=5.7 Score=33.73 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.....++|++++.++. +++++.|++++. ...|+||+++.|...+.
T Consensus 6 ~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~----~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 6 KNPFPATVLENRRLTSPGSDRSTRHIELDLSDS----GLSYQPGDHLGVYPPND 55 (219)
T ss_dssp TB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS----TG---TT-EEEEE-SSE
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC----CCcccCCCEEEEEccCC
Confidence 3456799999999976 599999998764 27899999999998864
No 94
>PLN02292 ferric-chelate reductase
Probab=77.10 E-value=3.2 Score=41.73 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.5
Q ss_pred ccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 242 ~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
...+++.+.+. ..++..|++|||+.|-+++.+.|.+..
T Consensus 652 rp~~~~i~~~~----~~~~vgvlv~gp~~~~~~va~~c~s~~ 689 (702)
T PLN02292 652 RPNLNKLLVGL----KGSSVGVLVCGPKKMRQKVAKICSSGL 689 (702)
T ss_pred CCCHHHHHHhc----CCCceeEEEECcHHHHHHHHHHHhcCC
Confidence 34455555432 357889999999999999999988754
No 95
>PLN02631 ferric-chelate reductase
Probab=76.57 E-value=3.5 Score=41.40 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=27.7
Q ss_pred cccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 243 GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 243 g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
..+.+.+.+. ...++.+|++|||+.|-.++.+.|.+..
T Consensus 649 p~~~~i~~~~---~~~~~vgvlv~gp~~~~~~va~~c~s~~ 686 (699)
T PLN02631 649 PNLKKILLEA---EGSEDVGVMVCGPRKMRHEVAKICSSGL 686 (699)
T ss_pred CCHHHHHHhc---cCCCceeEEEECcHHHHHHHHHHHhcCC
Confidence 3445555432 2246889999999999999999987654
No 96
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=74.41 E-value=27 Score=32.77 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=28.0
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcC
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~ 101 (285)
..+|..+.+.-+ .++.+++.++++. ..++||+|+.+++..
T Consensus 279 ~g~v~~i~p~vd~~trt~~vrv~l~N~~----~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 279 TIRKWTLLPSVDAATRTLQLRLEVDNAD----EALKPGMNAWLQLNT 321 (409)
T ss_pred EEEEEEEccccCCCCcEEEEEEEEeCCC----CccCCCCEEEEEEec
Confidence 456666554432 5777788887653 468999999999974
No 97
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=68.97 E-value=16 Score=25.38 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.++..+.++...|.+..+.....+.+ .|-.. -+....|-..++||++.+..|.|.
T Consensus 5 ~V~~Gs~V~l~~~~~~~~~~~~lv~~~~~~~~~~----~IS~~-SPLG~ALlG~~~Gd~v~~~~~~g~ 67 (77)
T PF01272_consen 5 VVTIGSTVTLKDLDDGEEETYTLVGPDEADPDNG----KISID-SPLGKALLGKKVGDEVEVELPGGE 67 (77)
T ss_dssp B-STTEEEEEEETTTTEEEEEEEE-GGG-BSTST----EEETT-SHHHHHHTT-BTT-EEEEEETTBE
T ss_pred EEEeCCEEEEEECCCCCEEEEEEEeEhHhCCcee----EEEec-CHHHHHhcCCCCCCEEEEEeCCce
Confidence 5689999999987777777788887664432234 22221 467778888999999999998884
No 98
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=67.73 E-value=31 Score=29.70 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=29.1
Q ss_pred eeeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 57 TPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 57 ~~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.+++|..+....+ ..+.+++.++++. ..+.+|+++.+.+...
T Consensus 155 ~~g~v~~I~~~~~~~~~~~~v~~~~~~~~----~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 155 LPARVDYVGPEVDGSSRTAKVRVLIKNEN----LTLKPGLFVQVRVETK 199 (265)
T ss_pred EEEEEEEEccccCCCCceEEEEEEEeCCC----CccCCCCEEEEEEecC
Confidence 4677877765543 4566677665542 3589999999999754
No 99
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=66.36 E-value=22 Score=28.63 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
.+.-|..|.|.-. .++...|+|.++...+...+.+.+ ..+..+.|-..++||+|.+..|.|.
T Consensus 85 ~V~~Gs~V~l~d~-~~~~~~~~iVgp~e~d~~~~~IS~-----~SPlG~ALlGk~vGd~v~v~~p~g~ 146 (157)
T PRK01885 85 KVFFGAWVEIENE-DGEEKRFRIVGPDEIDGRKGYISI-----DSPMARALLKKEVGDEVTVNTPAGE 146 (157)
T ss_pred EEEeCCEEEEEEC-CCCEEEEEEEChHHhCcCCCeEec-----cCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 4567888888764 456667888876654333454444 2567888889999999999999886
No 100
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=65.02 E-value=19 Score=25.71 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=48.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
-++|.+++.. ++-.+++++.++. . ...+..|++|.+. |. ..|+.+.. ++.|+|.+-.. =.....
T Consensus 7 ~g~I~~i~~~-~~~~~~~i~~~~~-~--~~~~~~g~SIavn----Gv--cLTV~~~~-----~~~f~~~l~~e-Tl~~T~ 70 (85)
T PF00677_consen 7 TGKIISIEKN-GDSQRLRIEIPDK-I--LSDLKIGGSIAVN----GV--CLTVTDIN-----EDWFEVDLIPE-TLRRTT 70 (85)
T ss_dssp EEEEEEEEEE-SSEEEEEEEESTG-G--GGTG-TTSEEEET----TE--EEEEEEEE-----TTEEEEEEEHH-HHHCSS
T ss_pred EEEEEEEEEC-CCCEEEEEEcCHH-H--HhhCccCcEEEEC----Ce--eeEEEEec-----CCEEEEechHH-Hhhhch
Confidence 3667777765 4577888887743 2 2468899877764 32 36776666 56777776543 112234
Q ss_pred hhCCCCCCEEEEE
Q 023223 138 LCGLKKGDVVEIS 150 (285)
Q Consensus 138 L~~l~~Gd~v~i~ 150 (285)
|.++++||+|.++
T Consensus 71 l~~~~~G~~VNlE 83 (85)
T PF00677_consen 71 LGNLKVGDRVNLE 83 (85)
T ss_dssp GGG--TTSEEEEE
T ss_pred hccCCCCCEEEEe
Confidence 6778999999885
No 101
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=64.98 E-value=20 Score=28.15 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 89 ~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
..-|..|.++..+.++...|.|..+.......+.+.+ . .+....|-..++||+|.+..|-|.
T Consensus 55 V~~Gs~V~~~~~~~~~~~~~~iVg~~Ead~~~~~ISi----~-SPlG~ALlG~~~Gd~v~v~~p~G~ 116 (137)
T PRK05753 55 VTMNSRVRFRDLSSGEERVRTLVYPADADDSEGQLSV----L-APVGAALLGLSVGQSIDWPLPGGK 116 (137)
T ss_pred EEeCCEEEEEECCCCCEEEEEEEChhHcCccCCcCcc----c-CHHHHHHcCCCCCCEEEEECCCCC
Confidence 4567788888766667777899887654333443332 2 466777888999999999999885
No 102
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=64.90 E-value=25 Score=32.98 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=28.0
Q ss_pred eeEEEEEeecC---CCeEEEEEECCCCCcccccCCCCCcEEEEEEcC
Q 023223 58 PTPLAEISPAA---ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (285)
Q Consensus 58 ~~~V~~~~~~~---~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~ 101 (285)
..+|..+.+.- ..++.+++.++++. ..+.||||+.+++..
T Consensus 273 ~G~v~~I~~~id~~t~t~~v~a~~~n~~----~~L~pG~~v~v~i~~ 315 (415)
T PRK11556 273 EGTLLSLDNQIDATTGTIKLKARFNNQD----DALFPNQFVNARMLV 315 (415)
T ss_pred eeEEEEeeccccCCCCEEEEEEEeCCCC----CccCCCCEEEEEEEe
Confidence 56777776543 35677777777642 357999999998864
No 103
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=61.53 E-value=12 Score=34.30 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.4
Q ss_pred CeEEEEEcCcc--hhHHHHHHHHhhc
Q 023223 169 PTVLIFATGSG--ISPIRSLIESGFS 192 (285)
Q Consensus 169 ~~~vliAgGtG--IaP~~sil~~~~~ 192 (285)
+++++.||||| |.|.+++.+++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46999999998 9999999999864
No 104
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=56.74 E-value=72 Score=29.45 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=27.1
Q ss_pred eeEEEEEeecC---CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAA---ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~---~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+.... ..++.+++.++++. ..+.||+|+.+.+...
T Consensus 256 ~g~v~~i~~~~d~~t~t~~V~~~~~n~~----~~L~pGm~~~v~i~~~ 299 (385)
T PRK09578 256 KGKLLFSDLAVDPTTDTVAMRALFPNPE----RELLPGAYVRIALDRA 299 (385)
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEeCCC----CcCCCCCEEEEEEEcc
Confidence 45565544332 24677777776652 4689999999999753
No 105
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=56.56 E-value=25 Score=28.19 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.++..+.++...|.|..+... +.-...|-.. -+....|-..++||+|.+..|.|.
T Consensus 85 ~V~~Gs~V~l~~~~~~~~~~~~lvg~~e~----d~~~~~IS~~-SPlG~aLlGk~~Gd~v~~~~p~g~ 147 (157)
T PRK00226 85 KVKFGSTVTLKDLDTDEEETYQIVGSDEA----DPKQGKISIE-SPIARALIGKKVGDTVEVTTPGGE 147 (157)
T ss_pred EEecCCEEEEEECCCCCEEEEEEEChhhc----CccCCeeccC-ChHHHHHhCCCCCCEEEEEcCCCc
Confidence 46789999998776666667888866542 2111122221 467778888999999999999884
No 106
>PRK06214 sulfite reductase; Provisional
Probab=53.88 E-value=42 Score=32.77 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=34.9
Q ss_pred CeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 55 VWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
....++|++++.+++ +++++.|++++. ...|+||+++.|.-.+.
T Consensus 167 ~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~----~l~Y~~GD~l~V~P~N~ 215 (530)
T PRK06214 167 NPVEATFLSRRRLNKPGSEKETWHVEIDLAGS----GLDYEVGDSLGLFPAND 215 (530)
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEecCCC----CCccCCCCEEEEeccCC
Confidence 344788999988875 599999998753 26899999999987754
No 107
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=53.58 E-value=42 Score=26.86 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=45.7
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
...-|+.|.+.-.+.++...|+|..+...+.+.+.+. .. -+....|-..++||++.+.+|.|.
T Consensus 78 ~V~~Gs~V~~~~~~~ge~~~~~iVg~~ead~~~~~IS----~~-SPig~aLlGk~vGd~v~v~~p~g~ 140 (151)
T COG0782 78 VVTFGSTVTLENLDDGEEVTYTIVGPDEADPAKGKIS----VD-SPLGRALLGKKVGDTVEVNTPGGE 140 (151)
T ss_pred EEecCCEEEEEECCCCCEEEEEEEcccccccccCcee----cc-CHHHHHHhCCCCCCEEEEecCCce
Confidence 4678999999988767777789988875432222222 11 467888889999999999999443
No 108
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=52.99 E-value=87 Score=28.94 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=28.8
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+.+..+ .++.+++.++++. ..++||+|+.+.+...
T Consensus 253 ~g~v~~i~~~~d~~t~t~~v~~~~~n~~----~~l~pGm~v~v~i~~~ 296 (385)
T PRK09859 253 TGTLKFSDPTVDETTGSVTLRAIFPNPN----GDLLPGMYVTALVDEG 296 (385)
T ss_pred ceEEEEecCccCCCCCeEEEEEEEECCC----CeECCCCEEEEEEecc
Confidence 567777765544 4667777776642 3689999999999743
No 109
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=50.25 E-value=65 Score=25.62 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.++..+.++...|.|..+.......+ .|-.. -+....|-..++||.|.+..|-|.
T Consensus 80 ~V~~Gs~V~l~~~~~g~~~~~~lVgp~e~d~~~~----~IS~~-SPlG~ALlG~~~Gd~v~v~~p~g~ 142 (151)
T TIGR01462 80 VVGFGSTVTIKDLDTGEEETYTIVGSWEADPKEG----KISID-SPLGKALIGKKVGDVVEVQTPKGE 142 (151)
T ss_pred EEeeCCEEEEEECCCCCEEEEEEECchhcCccCC----eecCC-CHHHHHHcCCCCCCEEEEEeCCCc
Confidence 4678889999877556656678887765322122 11111 366777888999999999998886
No 110
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=47.87 E-value=1.9e+02 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=30.3
Q ss_pred eeeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 57 TPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 57 ~~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
..++|..+....+ ..+.+++.++++. ..+.+|+++.+.+...
T Consensus 203 ~~g~I~~I~~~~~~~~~~~~v~~~~~~~~----~~l~~G~~v~v~i~~~ 247 (322)
T TIGR01730 203 FKGKLRFIDPRVDSGTGTVRVRATFPNPD----GRLLPGMFGRVTISLK 247 (322)
T ss_pred EeEEEEEEeccccCCCCeEEEEEEEcCCC----CcCCCCCEEEEEEecC
Confidence 4677777765544 5777887776542 5689999999988753
No 111
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=46.97 E-value=1.3e+02 Score=27.88 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=27.5
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+....+ .++.+++.++++. ..++||+|+.+++...
T Consensus 257 ~g~v~~i~~~~d~~trt~~V~~~~~n~~----~~L~pGm~~~v~i~~~ 300 (397)
T PRK15030 257 DGTLEFSDVTVDQTTGSITLRAIFPNPD----HTLLPGMFVRARLEEG 300 (397)
T ss_pred ceEEEEeeccccCCCCeEEEEEEEeCCC----CcccCCCEEEEEEeec
Confidence 466665544332 4667777776642 4689999999999743
No 112
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=46.46 E-value=77 Score=25.48 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
.+..|..|.|.-.+ ++...|+|..+...+...+.|. ...+..+.|-..++||+|.+..|-|.
T Consensus 83 ~V~~Gs~V~l~d~~-~~~~~~~iVgp~ead~~~~~IS-----~~SPlG~ALlGk~~GD~v~v~~p~g~ 144 (156)
T TIGR01461 83 KVFFGAWVELENDD-GVTHRFRIVGYDEIDGRKNYIS-----IDSPLARALLKKEVGDEVVVNTPAGE 144 (156)
T ss_pred EEecCeEEEEEECC-CCEEEEEEEChHHhCcCCCeEC-----CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 45678889998654 5666788887664322234333 21467778888999999999988885
No 113
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=42.67 E-value=70 Score=25.77 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
.+..|..|.|... .++...|.|...+..+..+.. .-.|- ..-+..+.|-..++||+|.+..|-|.
T Consensus 82 ~V~~Gs~Vtl~~~-~g~~~~~~IVg~~e~d~~~~~-~~~IS-~~SPlG~ALlGk~vGD~v~v~~p~g~ 146 (158)
T PRK05892 82 TLPGGTEVTLRFP-DGEVETMHVISVVEETPVGRE-AETLT-ADSPLGQALAGHQAGDTVTYSTPQGP 146 (158)
T ss_pred EEEcCcEEEEEEC-CCCEEEEEEeCchhcCccccc-CCEEc-cCCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 4577999999864 456677899887643110000 11111 11467788889999999999998885
No 114
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=37.97 E-value=99 Score=30.63 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=34.4
Q ss_pred eeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 56 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
...++|+.++.+++ +++++.|++++. ...|+||+++.|...+.
T Consensus 234 p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~----~~~Y~~GD~l~V~P~N~ 281 (597)
T TIGR01931 234 PFRAEVLENQKITGRNSKKDVRHIEIDLEGS----GLHYEPGDALGVWYKND 281 (597)
T ss_pred CeEEEEEeeEecCCCCCCceEEEEEEecCCC----CCccCCCCEEEEEeCCC
Confidence 34688888888874 699999998753 26899999999998764
No 115
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=37.79 E-value=1e+02 Score=28.91 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=32.3
Q ss_pred eeEEEEEeecCC----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|++++.+++ +++++.|++++. ...|+||+++.|...+.
T Consensus 7 ~~~v~~~~~lt~~~~~~~~~~~ld~~~~----~~~Y~~GD~l~I~p~N~ 51 (416)
T cd06204 7 LAPVAVSRELFTGSDRSCLHIEFDISGS----GIRYQTGDHLAVWPTNP 51 (416)
T ss_pred EeEEEEEeeccCCCCccEEEEEEeCCCC----CCcccCCCEEEEEcCCC
Confidence 577777777763 799999998653 26899999999988764
No 116
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=37.19 E-value=67 Score=29.51 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=23.7
Q ss_pred CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 70 ~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
+++++.|+.++. + ..|+||+++.|...+.
T Consensus 16 ~~~~i~~~~~~~-~---~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 16 ETRHIELDLEGS-G---LSYEPGDALGVYPTND 44 (360)
T ss_pred cEEEEEEeCCCC-C---CcccCCCEEEEEcCCC
Confidence 699999998753 2 5799999999998764
No 117
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=36.88 E-value=53 Score=29.39 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=51.2
Q ss_pred CCeeeeEEEEEeecCCCeEEE----EEECCCCCcccccCCCCCcEE--EEEEcCCCeeeeeeecCCCCCCCCCCeEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHV----SIDISDAPDIASSHTRAGQYL--QLRVVDVGKPTFLAIASPPSFASASGAFEFLV 127 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l----~l~~~~~~~l~~~~~~pGQ~v--~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~V 127 (285)
.....++|..++++...-+.+ .|-.. +.+ ...|.+- ++.+.....-.+| +++-|...+ .|.+.-.|
T Consensus 197 ~eL~~a~vt~ieplG~gDRVCVDTcsLm~~-gEG-----MLVGs~s~gmFlVhsEs~espY-VAaRPFRVN-AG~VhaYi 268 (376)
T COG1465 197 LELVTATVTEIEPLGSGDRVCVDTCSLMTR-GEG-----MLVGSQSRGMFLVHSESEESPY-VAARPFRVN-AGAVHAYI 268 (376)
T ss_pred eEEEEEEEEEEeecCCCceEEEeeeccccc-CCc-----eEeecccCcEEEEecccccCcc-cccCceeec-ccceeEEE
Confidence 346678999999997642222 22111 222 1223221 1222222111222 333443332 57788888
Q ss_pred EEeCCcchHHhhCCCCCCEEEEEeecC
Q 023223 128 KSVAGSTAEVLCGLKKGDVVEISQVMG 154 (285)
Q Consensus 128 k~~~G~~s~~L~~l~~Gd~v~i~gP~G 154 (285)
+. ||.-++||+.|+.||+|.|----|
T Consensus 269 ~v-Pg~kTkYLaEL~aGDeV~iVD~dG 294 (376)
T COG1465 269 RV-PGGKTKYLAELKAGDEVLIVDFDG 294 (376)
T ss_pred Ec-CCCceEEhhhhcCCCeEEEEecCC
Confidence 86 599999999999999999854334
No 118
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=36.28 E-value=83 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=18.7
Q ss_pred CeEEEEEcCcchhHHHHHHHHhhccCCCCcEEE
Q 023223 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRL 201 (285)
Q Consensus 169 ~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l 201 (285)
+++++|+||-|- +++++++.....++++
T Consensus 78 k~VLiiGgGdG~-----tlRevlkh~~ve~i~~ 105 (282)
T COG0421 78 KRVLIIGGGDGG-----TLREVLKHLPVERITM 105 (282)
T ss_pred CeEEEECCCccH-----HHHHHHhcCCcceEEE
Confidence 689999999995 4566665554444443
No 119
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=33.79 E-value=1.2e+02 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=34.4
Q ss_pred eeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 56 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
...++|+.++.++. +++++.|++++. ...|+||+++.|...+.
T Consensus 237 p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~----~l~Y~~GD~lgV~P~N~ 284 (600)
T PRK10953 237 PLTASLSVNQKITGRNSEKDVRHIEIDLGDS----GLRYQPGDALGVWYQND 284 (600)
T ss_pred CeEEEEEEEeecCCCCCCceEEEEEEecCCC----CCcccCCCEEEEEcCCC
Confidence 44688999998874 699999998653 26899999999987764
No 120
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=32.82 E-value=76 Score=29.23 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.6
Q ss_pred eEEEEEcCcc--hhHHHHHHHHhhccCCCCcEEEE
Q 023223 170 TVLIFATGSG--ISPIRSLIESGFSSKERSDVRLY 202 (285)
Q Consensus 170 ~~vliAgGtG--IaP~~sil~~~~~~~~~~~v~l~ 202 (285)
.+++.+|||| +.|.+++.+++.+++.. .+.++
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~ 35 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVL 35 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEe
Confidence 5889999997 99999999998765443 34433
No 121
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=32.59 E-value=86 Score=29.03 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=27.3
Q ss_pred EEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 61 LAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 61 V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
|++++.++ .+++++.|+++++ ..|+||+++.|...+.
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~~-----~~y~~GD~l~v~P~N~ 43 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPDG-----MTYRAGDYLAVLPRNP 43 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCCC-----CccCCCCEEEEECCCC
Confidence 44445454 4799999997542 5899999999987754
No 122
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=31.97 E-value=1.5e+02 Score=21.22 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeec
Q 023223 120 SGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVM 153 (285)
Q Consensus 120 ~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~ 153 (285)
++.+...+=+..|........++.||+|.+.|-.
T Consensus 27 ~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v 60 (91)
T cd04482 27 TGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSV 60 (91)
T ss_pred CcEEEEEEECcccccccccCCCCCCCEEEEEEEE
Confidence 3445554433324455555679999999998743
No 123
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=31.66 E-value=2.1e+02 Score=24.11 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=51.3
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
-++|.+++.. ++...++++.+.. + ...+.++.+|.+.- . ..|+.... ++.|++.+-..- .-..-
T Consensus 106 ~~~i~~i~~~-~~~~~~~i~~~~~--~-~~~i~~kgSIaidG----v--sLTV~~v~-----~~~f~v~lIp~T-l~~T~ 169 (206)
T PRK13020 106 TATVVEISDT-EENYDIRFRVPPE--W-MKYIFAKGFIGVNG----C--SLTVGEVD-----ESEFEVHLIPET-LRATN 169 (206)
T ss_pred EEEEEEEEEc-CCCEEEEEEEChH--H-hcccccCCEEEEee----E--EEEEEeEc-----CCEEEEEEeHHH-Hhhcc
Confidence 3667777765 4566777777633 2 23578888877762 2 36777764 556666664331 12224
Q ss_pred hhCCCCCCEEEEEe-ecCC
Q 023223 138 LCGLKKGDVVEISQ-VMGR 155 (285)
Q Consensus 138 L~~l~~Gd~v~i~g-P~G~ 155 (285)
|..+++||.|.++- ..|+
T Consensus 170 l~~~k~G~~VNiE~D~~~k 188 (206)
T PRK13020 170 LGAKKVGDLVNIEIDSQTQ 188 (206)
T ss_pred cccCCCCCEEEEeEeccch
Confidence 77899999999964 4554
No 124
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.31 E-value=79 Score=23.92 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=32.8
Q ss_pred EEEEEcCcc--hhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEee
Q 023223 171 VLIFATGSG--ISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLS 232 (285)
Q Consensus 171 ~vliAgGtG--IaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s 232 (285)
++++++|++ +-|++++.+++.++ +.+|.+.-... |++.+ +..|+++..+-.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r--Gh~V~~~~~~~------~~~~v---~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR--GHEVRLATPPD------FRERV---EAAGLEFVPIPG 53 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEETGG------GHHHH---HHTT-EEEESSS
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc--CCeEEEeeccc------ceecc---cccCceEEEecC
Confidence 578899996 99999999999764 44777433322 23332 556888766443
No 125
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=29.61 E-value=2e+02 Score=22.25 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=33.0
Q ss_pred cCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-CCeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223 67 AAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VGKPTFLAIASPPSFASASGAFEFLVKSV 130 (285)
Q Consensus 67 ~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-~~~~~~~si~s~p~~~~~~~~l~l~Vk~~ 130 (285)
+++..+++|+.-..+ -++||||.+---+ .+...+|+..+.+ +.+-+.|...
T Consensus 14 l~~~~~~~R~AK~TP-------~K~G~FVt~Wkr~~~g~~~Pf~~~d~~------d~liI~v~d~ 65 (123)
T PF08877_consen 14 LNGKTIRFRLAKKTP-------KKPGQFVTFWKRDENGKNQPFDEEDSF------DFLIINVIDG 65 (123)
T ss_pred ECCcEEEEEecccCC-------CcccEEEEEEEECCCCCccCCccccCC------CEEEEEEEeC
Confidence 344557777765443 4999999997764 4666777766554 3455566543
No 126
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=28.92 E-value=2.3e+02 Score=23.58 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=48.8
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
.++|.+++... +-..++++.+.. + .....+|++|.+. +- ..|+.... ++.|++.+-..- .-..-
T Consensus 105 ~g~I~~i~~~~-~~~~~~i~~~~~--~-~~~l~~kgSIavd----Gv--sLTV~~~~-----~~~f~v~lipeT-l~~T~ 168 (194)
T PRK09289 105 TGEIVSIEKEG-NSVEFRFKAPAE--L-AKYIVEKGSIAVD----GV--SLTVNEVD-----GDRFSVNLIPHT-LENTT 168 (194)
T ss_pred EEEEEEEEECC-CcEEEEEECChH--H-hcccccCCEEEEc----cE--EEEEEEEc-----CCEEEEEEeHHH-HhhCc
Confidence 36777777654 456778887642 1 2357899988776 22 36777664 556666664321 11123
Q ss_pred hhCCCCCCEEEEEe
Q 023223 138 LCGLKKGDVVEISQ 151 (285)
Q Consensus 138 L~~l~~Gd~v~i~g 151 (285)
|..+++||.|.++-
T Consensus 169 l~~~k~G~~VNlE~ 182 (194)
T PRK09289 169 LGEKKVGDRVNLEI 182 (194)
T ss_pred cccCCCCCEEEEeE
Confidence 66799999998863
No 127
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=27.94 E-value=81 Score=30.37 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
+....++++++++.+++ ||+.+.|+.++. ...|.||+-+.|.-.+.
T Consensus 193 ~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s----~~~~epGDvl~l~P~N~ 243 (574)
T KOG1159|consen 193 PQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDS----YEEFEPGDVLSLLPSNS 243 (574)
T ss_pred cccccccchhcceeecCcchhheeeEEEEecCCc----cccccCCCEEEEecCCc
Confidence 44555689999988886 899999999873 26899999999986643
No 128
>PRK00228 hypothetical protein; Validated
Probab=27.82 E-value=2.2e+02 Score=23.62 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred CCeEEEEEEEeCC-cchHHhhCCCC---------CCEEEEEeecCC--CcccCCCCCCCCCCeEEEEEcCcchhHHHHHH
Q 023223 120 SGAFEFLVKSVAG-STAEVLCGLKK---------GDVVEISQVMGR--GFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187 (285)
Q Consensus 120 ~~~l~l~Vk~~~G-~~s~~L~~l~~---------Gd~v~i~gP~G~--~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil 187 (285)
++.+-|.+-+-.+ ...+.+.++.. ...|.+.||.+. .|.+.... +.....+-|..|+.++--..++
T Consensus 39 ~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~--~~~~~s~~v~~gl~l~~s~d~l 116 (191)
T PRK00228 39 NGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQTDRGFVLHSPR--DGFDSSIRVSDGLVLTTSRDVL 116 (191)
T ss_pred CCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCccCCcEEEEEECC--CcCCCceeecCCeEEeCCHHHH
Confidence 6788888865433 34444443321 256888999864 35554211 1233567778888888888888
Q ss_pred HHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223 188 ESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 188 ~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
+.+.......+++++.|.-....--+.+|++
T Consensus 117 ~~l~~~~~~~~~~~flGyaGW~~gQLe~Ei~ 147 (191)
T PRK00228 117 EALATGPGPEGVLVALGYAGWGAGQLEQEIE 147 (191)
T ss_pred HHHhcCCCCCcEEEEEEECCCCHHHHHHHHH
Confidence 8876555557888888877766555555554
No 129
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=27.79 E-value=1e+02 Score=28.57 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.4
Q ss_pred CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 70 ~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
+++++.|++++. ...|+||+++.|...+.
T Consensus 16 ~~~hl~l~~~~~----~~~y~~GD~l~v~p~N~ 44 (382)
T cd06207 16 STRHIEFDLGGS----GLSYETGDNLGIYPENS 44 (382)
T ss_pred eEEEEEEecCCC----CCccCCCCEEEEEcCCC
Confidence 689999998643 26899999999998764
No 130
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=26.36 E-value=4e+02 Score=24.61 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEE--------EEEcCCCeeeeeeecCCCCCCCCCCeEE
Q 023223 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQ--------LRVVDVGKPTFLAIASPPSFASASGAFE 124 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~--------l~~~~~~~~~~~si~s~p~~~~~~~~l~ 124 (285)
.....+++|.+++++.-.-+. -++.- ..+.||+=+. +.+..+....+| +++-|...| -|.+.
T Consensus 174 ~l~L~~a~Vt~V~~vGmGdRV-CVDtc-------sll~~gEGmLVGs~s~glfLVhsEt~~~pY-va~RPFRVN-AGaVH 243 (354)
T PF01959_consen 174 KLELVPATVTRVEPVGMGDRV-CVDTC-------SLLRPGEGMLVGSSSSGLFLVHSETHESPY-VASRPFRVN-AGAVH 243 (354)
T ss_pred cceeEEEEEEEEEEcCCccEE-EEEcc-------ccCCCCCeEEEcccCceEEEEEeccccCCC-CCCCCceEe-cCcce
Confidence 456778999999998654332 23321 2345555222 112222222221 222232222 45566
Q ss_pred EEEEEeCCcchHHhhCCCCCCEEEEEeecCCCcc--cCCCCCCCCCCeEEEE
Q 023223 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFA--VDRIQPPDEYPTVLIF 174 (285)
Q Consensus 125 l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~~f~--~~~~~~~~~~~~~vli 174 (285)
=.|.. +|..++||+.|+.|++|.+...-|+.-. .-+.. -+.+++++|
T Consensus 244 aYv~~-pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvK--IE~RPLllI 292 (354)
T PF01959_consen 244 AYVLM-PGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVK--IERRPLLLI 292 (354)
T ss_pred eEEEc-CCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEE--EeecceEEE
Confidence 66665 4899999999999999999877776321 11111 135677776
No 131
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=25.51 E-value=4e+02 Score=22.30 Aligned_cols=95 Identities=11% Similarity=0.047 Sum_probs=55.2
Q ss_pred CCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc-ccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccc
Q 023223 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM-AYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQ 246 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~ 246 (285)
..+.-++++|.- =++++-|..-+.. ...+.+.....+...+ ++.+.+..+..+|+++.+..++-- +.-+
T Consensus 26 ~~~~~li~n~~n-e~il~~Li~~l~k--~~ef~IsVaFit~sG~sll~~~L~d~~~Kgvkgkilts~Yl-------nfTd 95 (198)
T COG3886 26 NYHPKLISNGYN-EKILPRLIDELEK--ADEFEISVAFITESGLSLLFDLLLDLVNKGVKGKILTSDYL-------NFTD 95 (198)
T ss_pred ccCceeeeCCCc-hhHHHHHHHHHhc--CCeEEEEEEEeeCccHHHHHHHHHHHhcCCceEEEeccccc-------CccC
Confidence 445666777776 5666666655543 3455555566655554 566777788888998888776531 1112
Q ss_pred hHHHHhhhcCCCCCcEEEEECchhHH
Q 023223 247 AAFSRAKKIFNPQGTGVVLCGQKQMA 272 (285)
Q Consensus 247 ~~~~~~~~~~~~~~~~vyiCGp~~m~ 272 (285)
..+.+.......-+..++.||...|.
T Consensus 96 P~al~~Ll~~~nve~r~~~~~~~~fH 121 (198)
T COG3886 96 PVALRKLLMLKNVELRVSTIGSANFH 121 (198)
T ss_pred HHHHHHHHhhhccceEEEecCccccc
Confidence 22222222223356778888877664
No 132
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=25.10 E-value=5.3e+02 Score=23.50 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=26.6
Q ss_pred eeEEEEEeecCC---C--eEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE---S--LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~---~--~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+.+..+ + .+.+++..+++. ..++||+++.+.+...
T Consensus 256 ~g~V~~I~~~~~~~~~~~~~~v~~~~~~~~----~~l~~Gm~v~v~i~~~ 301 (370)
T PRK11578 256 EGVLKDILPTPEKVNDAIFYYARFEVPNPN----GLLRLDMTAQVHIQLT 301 (370)
T ss_pred EEEEEEEccCceecccEEEEEEEEEecCCc----CcCCCCCEEEEEEEEc
Confidence 677877765533 2 244556655442 4579999999998743
No 133
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=24.96 E-value=1.4e+02 Score=27.85 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=24.9
Q ss_pred CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 69 ~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.+++++.|++++.. ...|+||+++.|...+.
T Consensus 15 ~~~~~i~ld~~~~~---~~~Y~~GD~l~V~p~N~ 45 (406)
T cd06202 15 RSTILVKLDTNGAQ---ELHYQPGDHVGIFPANR 45 (406)
T ss_pred ceEEEEEEECCCCC---CCCCCCCCEEEEEeCCC
Confidence 47999999987532 26899999999998765
No 134
>PF13289 SIR2_2: SIR2-like domain
Probab=24.62 E-value=3.1e+02 Score=20.66 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~ 209 (285)
...+++|+-|-+=.-+..+++.+.......+-.+++...+..
T Consensus 86 ~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 86 SKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 456777766655556777777766544443444555555544
No 135
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=24.53 E-value=1.3e+02 Score=25.20 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhh-----CCCCCCEEEEEeec
Q 023223 91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-----GLKKGDVVEISQVM 153 (285)
Q Consensus 91 pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~-----~l~~Gd~v~i~gP~ 153 (285)
-|+.+.+++++-+..++- +...|. .-.+.+.|.+++-+++.+.. .+++||++.+.+--
T Consensus 25 ~g~~~lvrC~eCG~V~~~-~i~~~k----~~~v~viVS~~~~S~~~~vel~~gE~l~vGDei~vd~e~ 87 (201)
T COG1326 25 RGREPLVRCEECGTVHPA-IIKTPK----PVRVRVIVSRHEESFTKEVELDPGETLKVGDEIEVDGEE 87 (201)
T ss_pred cCCceEEEccCCCcEeec-eeeccc----cceEEEEEecCCcccceeEecCCCCeEecCCEEEEcCCE
Confidence 388899999988887652 444444 67889999888546655443 27889988887643
No 136
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=24.44 E-value=2.2e+02 Score=19.35 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=32.4
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEE
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLR 98 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~ 98 (285)
.+.+++...+.+-..+...+++...++....-....||+.+.+-
T Consensus 11 ~~qsWRYT~v~N~C~~tvsVtV~Y~dg~~~pCr~~~PG~~~Tf~ 54 (69)
T smart00783 11 LYQSWRYTFVTNGCSETVSVTVVYTDGTWGPCRTAAPGDITTFG 54 (69)
T ss_pred EeeeeEEEeecCCCcccEEEEEEEeCCCcceeEeeCCCCEEEec
Confidence 35567788888888899999998877654433457899976654
No 137
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=23.87 E-value=4.2e+02 Score=22.06 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe-CCcchHHhhC------
Q 023223 68 AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCG------ 140 (285)
Q Consensus 68 ~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~-~G~~s~~L~~------ 140 (285)
.+..++++|+....+++. ..|+|=|.-.--.|++....+|...|..+ ...+-..+=.+ |+..+.|+.+
T Consensus 61 ~~R~I~V~F~a~~~~~lp-W~F~P~q~~v~V~pGE~~~~~y~a~N~sd----~~i~g~A~~nV~P~~a~~YF~KieCFCF 135 (188)
T PRK05089 61 LSRTITVEFDANVNGGLP-WEFKPEQRSVDVHPGELNLVFYEAENLSD----RPIVGQAIPSVTPGQAGAYFNKIECFCF 135 (188)
T ss_pred CCcEEEEEEeccCCCCCC-ceEEeeeeEEEEcCCCeEEEEEEEECCCC----CcEEEEEecccCHHHHhhhccceeeecc
Confidence 445677788766555543 47888886554456666667788888776 45555555333 3445555433
Q ss_pred ----CCCCCEEEEEeecCCCcccCC
Q 023223 141 ----LKKGDVVEISQVMGRGFAVDR 161 (285)
Q Consensus 141 ----l~~Gd~v~i~gP~G~~f~~~~ 161 (285)
|++|+++++-. .|.+|+
T Consensus 136 ~eQ~L~pgE~~~mPV----~F~IDP 156 (188)
T PRK05089 136 TQQTLQPGETREMPV----VFYVDP 156 (188)
T ss_pred cCcccCCCCeEecCE----EEEECC
Confidence 78999998844 366775
No 138
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=23.03 E-value=5.1e+02 Score=22.55 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=34.1
Q ss_pred EEEEcCc-chhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHH--CCCEEEEEeeC
Q 023223 172 LIFATGS-GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQ 233 (285)
Q Consensus 172 vliAgGt-GIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~~~v~~~~s~ 233 (285)
++|.||. ||. ++++++++. ...-..++..+|+.+.- .++++.|.. .++++....-.
T Consensus 6 v~ItGaNRGIG--lgLVk~llk--~~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~Ldvt 64 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLK--DKGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQLDVT 64 (249)
T ss_pred EEEeccCcchh--HHHHHHHhc--CCCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEEecc
Confidence 6666644 554 567777753 23345567777777764 667777753 47777655443
No 139
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=22.85 E-value=1.7e+02 Score=19.92 Aligned_cols=43 Identities=7% Similarity=0.259 Sum_probs=28.1
Q ss_pred eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEE
Q 023223 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLR 98 (285)
Q Consensus 56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~ 98 (285)
+.+++...+.+-..+++.++++..++.+..-.-..||+.+.+-
T Consensus 11 ~qsWRYT~v~N~Ca~tvsVtV~Y~dG~~~PCrv~~PG~~~Tf~ 53 (68)
T PF01356_consen 11 YQSWRYTDVTNGCADTVSVTVEYTDGQEVPCRVIPPGDIATFP 53 (68)
T ss_dssp EE-SSEEEEEE-SSS-EEEEEEETTS-CEEEEEE-TTEEEEEE
T ss_pred ecceEEEEeeCCCcccEEEEEEEeCCCcceeEEeCCCCEEEec
Confidence 4556778888889999999999887755433346788877665
No 140
>PLN02741 riboflavin synthase
Probab=22.25 E-value=3.5e+02 Score=22.60 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=47.2
Q ss_pred eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (285)
Q Consensus 59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L 138 (285)
++|.+++...++..+++++ +.. + ......|+.|.+. +. ..|+.... ++.|.+.+-... --..-|
T Consensus 10 G~I~~i~~~~~~~~~l~i~-~~~--~-~~~l~~G~SIAvn----Gv--CLTV~~~~-----~~~f~vdvipET-l~~T~L 73 (194)
T PLN02741 10 GEVKSLGVTDDGGFDLKIE-AST--V-LDGVKLGDSIAVN----GT--CLTVTEFD-----GDEFTVGLAPET-LRKTSL 73 (194)
T ss_pred EEEEEEEecCCCcEEEEEE-cch--h-hcccccCCEEEEC----cE--EEEEEEEC-----CCEEEEEEEHHH-hhhCcc
Confidence 5677777624456778887 322 1 2367899987765 22 46776664 456666654321 111236
Q ss_pred hCCCCCCEEEEEee
Q 023223 139 CGLKKGDVVEISQV 152 (285)
Q Consensus 139 ~~l~~Gd~v~i~gP 152 (285)
..+++|+.|.++.+
T Consensus 74 ~~l~~G~~VNLEra 87 (194)
T PLN02741 74 GELKTGSLVNLERA 87 (194)
T ss_pred ccCCCCCEEeeccC
Confidence 67899999999654
No 141
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.50 E-value=1.9e+02 Score=20.58 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=14.8
Q ss_pred cCCCCCcEEEEEEcCCCeeeeeeecC
Q 023223 87 SHTRAGQYLQLRVVDVGKPTFLAIAS 112 (285)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~~~~si~s 112 (285)
..++|||.+.+.+...++-..+.+-.
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L~~~~ 66 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTALRYER 66 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEEEEEE
T ss_pred hhCCCCCEEEEEECCCCCEEEEEEEc
Confidence 56899999999998777654444433
No 142
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=20.49 E-value=3.1e+02 Score=24.73 Aligned_cols=52 Identities=13% Similarity=0.362 Sum_probs=40.3
Q ss_pred eEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHH
Q 023223 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES 222 (285)
Q Consensus 170 ~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~ 222 (285)
++.+++.|..+-.++-+|.+++..+ ...++++..+.+.-.-.+++.|++|..
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n-~~~l~Fhi~~d~~~~~~~~~~l~~~~~ 53 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFS-QKPLRFHIFAEDQLKQSFKEKLDDWPE 53 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhC-CCCEEEEEEECCccCHHHHHHHHHHHH
Confidence 4788999999999999999987654 467887777766455577778888855
No 143
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=20.26 E-value=3.9e+02 Score=22.43 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=48.7
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
-++|.+++... +..+++++.+.. + ......|++|.+. +. +.|+.... ++.|.+.+-..- --..-
T Consensus 9 ~G~V~~i~~~~-~~~~l~i~~~~~--~-~~~l~~G~SIAvn----Gv--CLTV~~i~-----~~~f~vdvipET-l~~Tt 72 (200)
T TIGR00187 9 TAKLVSIKEKP-LFISLVVNLADH--M-LDDLELGDSIAVN----GV--CLTVTEIN-----KNHFSVDLSPET-LKRTN 72 (200)
T ss_pred EEEEEEEEECC-CcEEEEEEeChH--H-hcccccCCEEEEC----cE--EEEEEEEc-----CCEEEEEEEHHH-hhhcc
Confidence 35677777654 456778876532 1 2367889987765 22 35666664 566766664221 11123
Q ss_pred hhCCCCCCEEEEEeec
Q 023223 138 LCGLKKGDVVEISQVM 153 (285)
Q Consensus 138 L~~l~~Gd~v~i~gP~ 153 (285)
|..+++||.|.++-+.
T Consensus 73 L~~l~~G~~VNLEral 88 (200)
T TIGR00187 73 LGDLKVGTWVNIERAL 88 (200)
T ss_pred hhhCcCCCEEEEcccC
Confidence 6678999999997543
Done!