Query 023223
Match_columns 285
No_of_seqs 163 out of 1491
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 5.7E-40 2E-44 284.0 26.3 224 50-284 5-235 (243)
2 1umk_A B5R, NADH-cytochrome B5 100.0 4.5E-39 1.5E-43 283.4 25.1 230 49-284 9-267 (275)
3 1tvc_A Methane monooxygenase c 100.0 3.3E-39 1.1E-43 280.6 21.4 222 53-284 7-234 (250)
4 3vo2_A Putative uncharacterize 100.0 2.1E-38 7.2E-43 284.0 24.4 223 51-282 28-284 (310)
5 1qfj_A Protein (flavin reducta 100.0 1.6E-38 5.6E-43 273.0 22.6 212 57-284 3-219 (232)
6 4eh1_A Flavohemoprotein; struc 100.0 5E-38 1.7E-42 271.6 25.8 212 55-284 2-225 (243)
7 2cnd_A NADH-dependent nitrate 100.0 4.8E-38 1.6E-42 276.0 24.7 225 52-284 8-261 (270)
8 1fdr_A Flavodoxin reductase; f 100.0 2.6E-37 8.9E-42 268.1 27.0 215 55-284 3-231 (248)
9 2r6h_A NADH:ubiquinone oxidore 100.0 4.7E-37 1.6E-41 272.4 27.7 218 55-284 8-279 (290)
10 1fnb_A Ferredoxin-NADP+ reduct 100.0 1.7E-37 5.8E-42 278.6 23.8 223 52-283 33-289 (314)
11 3lo8_A Ferredoxin--NADP reduct 100.0 1.5E-37 5.3E-42 278.4 23.5 224 51-282 23-285 (311)
12 1krh_A Benzoate 1,2-dioxygenas 100.0 6E-37 2.1E-41 277.6 25.1 216 54-284 106-325 (338)
13 1gvh_A Flavohemoprotein; oxido 100.0 7.7E-37 2.6E-41 282.5 25.6 218 54-284 150-380 (396)
14 1cqx_A Flavohemoprotein; globi 100.0 1.5E-36 5.1E-41 281.2 25.9 217 54-284 152-386 (403)
15 2bgi_A Ferredoxin-NADP(H) redu 100.0 2.1E-36 7.1E-41 266.2 24.6 214 55-284 15-250 (272)
16 3jqq_A Ferredoxin NADP reducta 100.0 1.1E-36 3.7E-41 273.6 22.5 217 53-284 12-302 (316)
17 2b5o_A FNR, ferredoxin--NADP r 100.0 2E-36 6.7E-41 280.2 24.6 224 52-283 118-377 (402)
18 2qdx_A Ferredoxin reductase; o 100.0 9.7E-37 3.3E-41 266.0 20.2 214 55-284 2-236 (257)
19 4fk8_A Ferredoxin--NADP reduct 100.0 3E-37 1E-41 271.3 16.5 215 54-284 17-252 (271)
20 2bmw_A Ferredoxin--NADP reduct 100.0 8.5E-36 2.9E-40 266.2 25.2 219 54-280 19-276 (304)
21 4g1v_A Flavohemoglobin; three 100.0 1.7E-35 5.7E-40 273.9 26.6 216 54-284 147-380 (399)
22 1ep3_B Dihydroorotate dehydrog 100.0 1.2E-35 4E-40 260.1 20.6 205 58-284 7-214 (262)
23 2rc5_A Ferredoxin-NADP reducta 100.0 6.1E-35 2.1E-39 261.9 23.6 223 54-284 19-291 (314)
24 2pia_A Phthalate dioxygenase r 100.0 2.5E-34 8.7E-39 258.7 22.9 207 52-281 4-214 (321)
25 2gpj_A Siderophore-interacting 100.0 4.5E-30 1.5E-34 223.4 19.4 205 54-284 6-216 (252)
26 1ddg_A Sulfite reductase (NADP 100.0 8E-28 2.7E-32 220.3 21.7 168 104-282 159-344 (374)
27 1f20_A Nitric-oxide synthase; 99.9 1.1E-25 3.8E-30 209.9 17.9 172 103-283 208-404 (435)
28 2qtl_A MSR;, methionine syntha 99.9 7.7E-26 2.6E-30 215.6 14.3 173 104-282 290-508 (539)
29 4dql_A Bifunctional P-450/NADP 99.9 5.2E-26 1.8E-30 209.4 12.6 183 88-282 156-361 (393)
30 1tll_A Nitric-oxide synthase, 99.9 2.7E-24 9.4E-29 210.6 18.0 170 104-282 430-624 (688)
31 3lrx_A Putative hydrogenase; a 99.9 1E-25 3.5E-30 182.4 4.7 132 141-284 1-137 (158)
32 3qfs_A CPR, P450R, NADPH--cyto 99.9 1.1E-23 3.8E-28 196.8 16.5 169 103-282 232-427 (458)
33 2bpo_A CPR, P450R, NADPH-cytoc 99.9 1.4E-25 4.7E-30 219.7 3.8 183 89-282 414-652 (682)
34 3qe2_A CPR, P450R, NADPH--cyto 99.9 6.2E-23 2.1E-27 198.9 15.9 167 104-282 393-587 (618)
35 3lyu_A Putative hydrogenase; t 99.9 3E-24 1E-28 170.6 5.5 126 147-284 3-132 (142)
36 3a1f_A Cytochrome B-245 heavy 99.8 2.8E-21 9.5E-26 159.4 8.0 133 147-284 1-171 (186)
37 2f23_A Anti-cleavage anti-GREA 70.3 8.4 0.00029 29.8 5.7 65 88-155 82-146 (156)
38 3s2u_A UDP-N-acetylglucosamine 64.6 6.7 0.00023 34.5 4.6 34 169-204 3-38 (365)
39 3ne5_B Cation efflux system pr 56.2 9 0.00031 34.5 3.9 39 58-100 277-318 (413)
40 3bmb_A Regulator of nucleoside 56.1 29 0.00098 26.0 6.2 62 88-154 53-114 (136)
41 2pn0_A Prokaryotic transcripti 55.7 14 0.00048 28.0 4.4 62 88-154 56-117 (141)
42 2l82_A Designed protein OR32; 55.2 56 0.0019 23.6 7.1 90 183-284 15-104 (162)
43 3qfs_A CPR, P450R, NADPH--cyto 54.9 26 0.00089 32.1 6.8 46 53-102 59-108 (458)
44 2qtl_A MSR;, methionine syntha 54.2 27 0.00092 32.7 6.9 45 54-102 112-161 (539)
45 4dql_A Bifunctional P-450/NADP 53.9 24 0.00081 31.6 6.3 42 56-102 6-52 (393)
46 2p4v_A Transcription elongatio 52.3 12 0.00041 29.1 3.5 61 88-155 84-145 (158)
47 1f20_A Nitric-oxide synthase; 46.9 38 0.0013 30.7 6.5 46 54-102 28-78 (435)
48 3lnn_A Membrane fusion protein 46.3 47 0.0016 28.7 6.9 42 58-103 240-284 (359)
49 1grj_A GREA protein; transcrip 45.3 15 0.00051 28.5 3.1 63 88-155 85-147 (158)
50 3mxn_B RECQ-mediated genome in 39.6 29 0.00099 26.5 3.7 50 51-100 57-110 (150)
51 4he6_A Peptidase family U32; u 38.0 20 0.00069 24.6 2.5 18 141-158 30-47 (89)
52 3ddy_A Lumazine protein, LUMP; 37.8 1.5E+02 0.005 23.5 7.9 78 58-151 105-182 (186)
53 3qe2_A CPR, P450R, NADPH--cyto 37.3 63 0.0022 30.7 6.7 43 56-102 222-268 (618)
54 3keo_A Redox-sensing transcrip 37.0 60 0.002 26.3 5.6 103 177-284 65-173 (212)
55 3fpp_A Macrolide-specific effl 35.3 40 0.0014 29.0 4.6 41 58-102 226-271 (341)
56 1tll_A Nitric-oxide synthase, 35.3 69 0.0024 30.9 6.6 45 55-102 250-299 (688)
57 3ipc_A ABC transporter, substr 28.0 1.5E+02 0.005 25.0 7.0 25 260-284 194-218 (356)
58 3lkb_A Probable branched-chain 27.5 2.6E+02 0.0089 23.8 8.7 94 183-284 130-223 (392)
59 2dig_A Lamin-B receptor; tudor 26.4 52 0.0018 21.4 2.7 30 48-78 21-50 (68)
60 3miz_A Putative transcriptiona 25.4 2.3E+02 0.008 23.0 7.7 98 182-284 118-221 (301)
61 2q7x_A UPF0052 protein SP_1565 24.4 52 0.0018 28.7 3.3 23 168-190 4-26 (326)
62 3o21_A Glutamate receptor 3; p 23.4 3.5E+02 0.012 23.2 9.4 82 195-284 129-210 (389)
63 2ew0_A Hypothetical protein ac 23.1 40 0.0014 27.0 2.1 97 120-218 35-140 (192)
64 2p0y_A Hypothetical protein LP 23.0 48 0.0016 29.1 2.8 24 167-190 9-32 (341)
65 2l1t_A Uncharacterized protein 21.9 87 0.003 22.6 3.5 62 87-155 11-74 (109)
66 1vf7_A Multidrug resistance pr 21.8 61 0.0021 28.3 3.3 41 58-102 222-265 (369)
67 3td9_A Branched chain amino ac 21.6 3.6E+02 0.012 22.5 8.7 93 183-284 136-229 (366)
68 3gge_A PDZ domain-containing p 21.4 2.1E+02 0.0072 19.8 5.9 55 91-151 3-58 (95)
69 2bpo_A CPR, P450R, NADPH-cytoc 21.4 1.2E+02 0.0043 29.0 5.6 41 58-102 261-305 (682)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=5.7e-40 Score=283.96 Aligned_cols=224 Identities=16% Similarity=0.273 Sum_probs=190.9
Q ss_pred ccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEE
Q 023223 50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLV 127 (285)
Q Consensus 50 ~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~V 127 (285)
.+++..|..++|++++.+++++++++|+.+++. ....|+||||+.|+++.. ...|+|||+|.+.. ++.++|+|
T Consensus 5 ~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~---~~~~~l~v 79 (243)
T 2eix_A 5 ALNPNEYKKFMLREKQIINHNTRLFRFNLHHPE--DVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE---KGYFDLII 79 (243)
T ss_dssp SCCSSSCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEE
T ss_pred cCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCC--cccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC---CCEEEEEE
Confidence 345678999999999999999999999987542 136799999999999843 35789999999864 78999999
Q ss_pred EEeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEcc
Q 023223 128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGA 205 (285)
Q Consensus 128 k~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~ 205 (285)
|.++ |.+|+||+++++||+|.+.||+|+ |.++. +..++++|||||+||||+++|++++.+. +...+++|+|++
T Consensus 80 k~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~~----~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~ 154 (243)
T 2eix_A 80 KVYEKGQMSQYIDHLNPGDFLQVRGPKGQ-FDYKP----NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN 154 (243)
T ss_dssp ECCTTCHHHHHHHTCCTTCEEEEEEEECS-CCCCT----TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEE
T ss_pred EEcCCCCcchHhhcCCCCCEEEEECCeEE-EEeCC----CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEc
Confidence 9985 789999999999999999999999 76652 3468999999999999999999998764 346789999999
Q ss_pred CCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCC-CCCcEEEEECchhHHHHHHHHHHhc
Q 023223 206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 206 r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
|+.++++|+++|++|..+ ++++++++++++++|.+..|++++...++. ... ..+..+|+|||+.|++.+++.|.++
T Consensus 155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~-~~~~~~~~~vy~CGp~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 155 VNEDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQH-FSPPSSDIKVMMCGPPMMNKAMQGHLETL 233 (243)
T ss_dssp EEGGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHH-SCCTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHHh-cCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 999999999999999763 799999999888889899999997554421 222 2567899999999999999999999
Q ss_pred CC
Q 023223 283 SA 284 (285)
Q Consensus 283 Gv 284 (285)
|+
T Consensus 234 G~ 235 (243)
T 2eix_A 234 GY 235 (243)
T ss_dssp TC
T ss_pred CC
Confidence 87
No 2
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=4.5e-39 Score=283.37 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=190.2
Q ss_pred hccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEE
Q 023223 49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL 126 (285)
Q Consensus 49 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~ 126 (285)
+.+++..|..++|++++.+++++++++|+.+++. ....|+|||||.|+++..+ ..|+|||++.|.. ++.++|+
T Consensus 9 ~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~ 83 (275)
T 1umk_A 9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQ--HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLV 83 (275)
T ss_dssp SCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTT--CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEE
T ss_pred cccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcc--cccCCCCCcEEEEEEeeCCcEEEeccccCCccCC---CCeEEEE
Confidence 4456778999999999999999999999987542 1357999999999987444 6799999999864 7899999
Q ss_pred EEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCc-------ccCCCC----CCCCCCeEEEEEcCcchhHHHH
Q 023223 127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGF-------AVDRIQ----PPDEYPTVLIFATGSGISPIRS 185 (285)
Q Consensus 127 Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f-------~~~~~~----~~~~~~~~vliAgGtGIaP~~s 185 (285)
||.+ + |.+|+||+++++||+|.++||+|.++ .+.... .....++++||||||||||+++
T Consensus 84 vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~ 163 (275)
T 1umk_A 84 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQ 163 (275)
T ss_dssp EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHH
T ss_pred EEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHH
Confidence 9987 3 78999999999999999999999842 222100 0014679999999999999999
Q ss_pred HHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCC-CCC
Q 023223 186 LIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQG 260 (285)
Q Consensus 186 il~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~ 260 (285)
|++++++. +...+++|+|++|+.++++|+++|++|..+ ++++++++++++++|.+..|++++.+.++ .... ..+
T Consensus 164 ~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~-~l~~~~~~ 242 (275)
T 1umk_A 164 VIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD-HLPPPEEE 242 (275)
T ss_dssp HHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH-HSCCGGGC
T ss_pred HHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH-hcCCCCCC
Confidence 99998765 456899999999999999999999999864 68999989988888999999999865543 2222 256
Q ss_pred cEEEEECchhHHH-HHHHHHHhcCC
Q 023223 261 TGVVLCGQKQMAE-VCYCFCLEFSA 284 (285)
Q Consensus 261 ~~vyiCGp~~m~~-~~~~~L~~~Gv 284 (285)
..+|+|||+.|++ .+++.|.++|+
T Consensus 243 ~~vyvCGp~~m~~~~v~~~L~~~G~ 267 (275)
T 1umk_A 243 PLVLMCGPPPMIQYACLPNLDHVGH 267 (275)
T ss_dssp CEEEEESCHHHHHHTTHHHHHHHTC
T ss_pred eEEEEECCHHHHHHHHHHHHHHcCC
Confidence 7899999999999 89999999987
No 3
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=3.3e-39 Score=280.55 Aligned_cols=222 Identities=17% Similarity=0.349 Sum_probs=189.2
Q ss_pred CCCeeeeEEEEEeecCCCeEEEEEEC-C-CCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223 53 TTVWTPTPLAEISPAAESLFHVSIDI-S-DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV 130 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~~~~~l~l~~-~-~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~ 130 (285)
...+..++|++++.+++++++++|+. + +... ....|+||||+.|++++....|+|||++.|.. ++.++|+||.+
T Consensus 7 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~i~vk~~ 82 (250)
T 1tvc_A 7 EVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGN-RGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRVL 82 (250)
T ss_dssp CSSEEEEEBCCCEEEETTEEEEEECSSTTSSSS-SCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECCC
T ss_pred CcceEEEEEEEEEEcCCCeEEEEEEecCCCCcc-cccCcCCCcEEEEEeCCCccccccccCCCCCC---CCeEEEEEEEC
Confidence 34677899999999999999999997 5 4210 02679999999999987677899999999875 68999999998
Q ss_pred C-CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223 131 A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (285)
Q Consensus 131 ~-G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~ 208 (285)
+ |.+|+||+ ++++||+|.+.||+|+ |.+.. ...++++||||||||||+++|++++.+.+...+++|+|++|+.
T Consensus 83 ~~G~~s~~l~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r~~ 157 (250)
T 1tvc_A 83 PEGRFSDYLRNDARVGQVLSVKGPLGV-FGLKE----RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTE 157 (250)
T ss_dssp TTSSSHHHHHHHSSSSSEEEEEEEECC-CSCCC----CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSS
T ss_pred CCCCchHHHHhcCCCCCEEEEEcCccc-cccCc----cCCceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeCCH
Confidence 6 68999996 8999999999999999 44432 2358899999999999999999999876666899999999999
Q ss_pred cccccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 209 ~~~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++++|.++|++|.. .++++++++++++++|.+..|++++.+.+.... ...+..+|+|||+.|++.+++.|.++|+
T Consensus 158 ~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~-~~~~~~vyvCGp~~m~~~v~~~l~~~G~ 234 (250)
T 1tvc_A 158 PELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLES-SDANPDIYLCGPPGMIDAACELVRSRGI 234 (250)
T ss_dssp TTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHHHHHHH-SSSSSEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHHhhhhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence 99999999999975 489999999988888999999999887753211 1356789999999999999999999886
No 4
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=2.1e-38 Score=284.01 Aligned_cols=223 Identities=22% Similarity=0.327 Sum_probs=185.9
Q ss_pred cCCCCeeeeEEEEEeecCCC-----eEEEEEECCCCCcccccCCCCCcEEEEEEcCC---C---eeeeeeecCCCCCCC-
Q 023223 51 QDTTVWTPTPLAEISPAAES-----LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS- 118 (285)
Q Consensus 51 ~~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~---~~~~~si~s~p~~~~- 118 (285)
..+.....++|++++.++++ +++++|+.+.. +.|+|||||.|++++. + ..|+|||+|.|....
T Consensus 28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~ 102 (310)
T 3vo2_A 28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE-----IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFG 102 (310)
T ss_dssp BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTT
T ss_pred ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC-----CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCC
Confidence 34455678999999999997 99999996532 5799999999999752 2 468999999986311
Q ss_pred CCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHH
Q 023223 119 ASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188 (285)
Q Consensus 119 ~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~ 188 (285)
+++.++|+||.+ .|.+|+||+++++||+|.+.||+|.+|.+.. +..++++|||||||||||+++++
T Consensus 103 ~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~ 178 (310)
T 3vo2_A 103 DSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPK----DPNATVIMLATGTGIAPFRSFLW 178 (310)
T ss_dssp SSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHH
T ss_pred CCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCC----CCCCCEEEEeCCcchhHHHHHHH
Confidence 268999999986 3889999999999999999999999665432 35689999999999999999999
Q ss_pred HhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cC
Q 023223 189 SGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IF 256 (285)
Q Consensus 189 ~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~ 256 (285)
+++..+. ..+++|+|++|+.++++|+++|++|... ++++++++++++++|.+..+++++.+.+... ..
T Consensus 179 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l 258 (310)
T 3vo2_A 179 KMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELL 258 (310)
T ss_dssp HHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHH
T ss_pred HHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhc
Confidence 9875432 3789999999999999999999999874 7999999999988999999999987765221 12
Q ss_pred CCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 257 NPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 257 ~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
...+..+|+|||++|++.+++.|.+.
T Consensus 259 ~~~~~~vyvCGp~~M~~~v~~~L~~~ 284 (310)
T 3vo2_A 259 KKDNTYVYMCGLKGMEKGIDDIMLNL 284 (310)
T ss_dssp TSTTEEEEEEESTTHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999864
No 5
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=1.6e-38 Score=272.98 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=179.7
Q ss_pred eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (285)
Q Consensus 57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s 135 (285)
..++|++++.+++++++++|+.++. +.|+||||+.|++++ ...|+|||++.|.. ++.++|+||.++ |..+
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~-~~~R~ySi~s~~~~---~~~l~l~i~~~~~G~~s 73 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDAA-----FSFRAGQYLMVVMDE-RDKRPFSMASTPDE---KGFIELHIGASEINLYA 73 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESSC-----CCCCTTCEEEEESSS-SCEEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred eEEEEEEEEecCCCEEEEEEecCCC-----CCcCCCCEEEEECCC-CceeeeecCCCCCC---CCcEEEEEEEccCCchh
Confidence 4689999999999999999997532 589999999999986 56789999999974 679999999985 4555
Q ss_pred H-HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 136 E-VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 136 ~-~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
. +++++++||+|.+.||+|+ |.+.. +..++++|||||+||||++++++++...+...+++|+|++|+.++++|.
T Consensus 74 ~~~~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~ 148 (232)
T 1qfj_A 74 KAVMDRILKDHQIVVDIPHGE-AWLRD----DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDL 148 (232)
T ss_dssp HHHHHHHHHHSEEEEEEEECS-CCCCS----CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTH
T ss_pred HHHHHhCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhhhH
Confidence 5 5678999999999999999 44431 2468999999999999999999999876667899999999999999999
Q ss_pred HHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH-HhcCC
Q 023223 215 DKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC-LEFSA 284 (285)
Q Consensus 215 ~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L-~~~Gv 284 (285)
++|++|.. .++++++++++++++|.+..|++++.+.+. ..+..+..+|+|||++|++.+++.| .++|+
T Consensus 149 ~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~--~~~~~~~~vyvCGp~~m~~~v~~~l~~~~g~ 219 (232)
T 1qfj_A 149 CELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNA 219 (232)
T ss_dssp HHHHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHh--cCCccccEEEEECCHHHHHHHHHHHHHHcCC
Confidence 99999986 489999999998888999999999887763 3344678999999999999999999 88886
No 6
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=5e-38 Score=271.65 Aligned_cols=212 Identities=15% Similarity=0.199 Sum_probs=182.0
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSV 130 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~~ 130 (285)
.|++++|++++.+++++++++|+.++... ...|+||||+.|+++..+ ..|+|||++.|. ++.++|+||.+
T Consensus 2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~--~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~~~i~vk~~ 75 (243)
T 4eh1_A 2 DGRTFVVREKQVESAYVTSFVLVPADGGA--VLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKRE 75 (243)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSCSC--CCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC----SSCEEEEEECT
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCcCCCCEEEEEEecCCCccccceeeEeccCCC----CCeEEEEEEEe
Confidence 68999999999999999999999765422 267999999999998543 469999999986 68899999998
Q ss_pred -----C-CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEE
Q 023223 131 -----A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203 (285)
Q Consensus 131 -----~-G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~ 203 (285)
+ |.+|+||+ ++++||+|.+.||+|. |.++ +..++++||||||||||++++++++.+.+... ++++|
T Consensus 76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~-~~~~-----~~~~~~vliagGtGitp~~~~l~~l~~~~~~~-v~l~~ 148 (243)
T 4eh1_A 76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGD-FFYV-----ERERPVVLISAGVGATPMQAILHTLAKQNKSG-VTYLY 148 (243)
T ss_dssp TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECS-CCCC-----CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred ecCCCCCCeehhHHHhcCCCCCEEEEEccCcc-cCcC-----CCCCCEEEEEccccHHHHHHHHHHHHHcCCCe-EEEEE
Confidence 4 67899997 5999999999999998 5454 35789999999999999999999998765445 99999
Q ss_pred ccCCccccccHHHHHHHHHC-CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 204 GARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 204 ~~r~~~~~~~~~~l~~l~~~-~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
++|+.++++|.++|++|..+ +++++++++++.++|. ..|++++... . . ...+..+|+|||+.|++++++.|.++
T Consensus 149 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~s~~~~~~~-~~g~~~~~~~-~--~-~~~~~~vyvCGp~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 149 ACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDV-LQGEMQLAEL-I--L-PIEDGDFYLCGPIGFMQYVVKQLLAL 223 (243)
T ss_dssp EESSGGGCTTHHHHHHHHHHHTCEEEEEESSCCCTTC-EESSCCCTTS-C--C-CTTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred EeCChhhhhHHHHHHHHHHhCCeEEEEEEccCCCccc-ccCCccHHHe-e--c-cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 99999999999999998865 8999999998776665 6788887654 1 2 23678999999999999999999999
Q ss_pred CC
Q 023223 283 SA 284 (285)
Q Consensus 283 Gv 284 (285)
|+
T Consensus 224 g~ 225 (243)
T 4eh1_A 224 GV 225 (243)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 7
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=4.8e-38 Score=275.99 Aligned_cols=225 Identities=17% Similarity=0.277 Sum_probs=184.2
Q ss_pred CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223 52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKS 129 (285)
Q Consensus 52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~ 129 (285)
++..|..++|++++.+++++++++|+.++.. ..+.|+||||+.|.++.. ...|+|||++.+.. ++.++|+||.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~vk~ 82 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPD--QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKV 82 (270)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEEC
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEECCCCc--cccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC---CCEEEEEEEE
Confidence 4456889999999999999999999987542 236799999999998743 35799999999864 6899999998
Q ss_pred e----------CCcchHHhhCCCCCCEEEEEeecCC-------CcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhc
Q 023223 130 V----------AGSTAEVLCGLKKGDVVEISQVMGR-------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS 192 (285)
Q Consensus 130 ~----------~G~~s~~L~~l~~Gd~v~i~gP~G~-------~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~ 192 (285)
+ .|.+|+||+++++||+|.+.||+|. .|.++.. ++..++++||||||||||+++|+++++.
T Consensus 83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~--~~~~~~~vliagGtGiaP~~~~l~~l~~ 160 (270)
T 2cnd_A 83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK--QRNARRLAMICGGSGITPMYQIIQAVLR 160 (270)
T ss_dssp CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCC--cccCCEEEEEeccccHHHHHHHHHHHHh
Confidence 5 3789999999999999999999998 3554310 0246899999999999999999999886
Q ss_pred c--CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeC---CCCCCCccccccchHHHHhhhcCC-CCCcEE
Q 023223 193 S--KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFN-PQGTGV 263 (285)
Q Consensus 193 ~--~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~---~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~v 263 (285)
. ....+++|+|++|+.++++|+++|++|..+ ++++++++++ ++++|.+..|++++.+.++. ... ..+..+
T Consensus 161 ~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~-l~~~~~~~~v 239 (270)
T 2cnd_A 161 DQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREH-VPEGGDDTLA 239 (270)
T ss_dssp TTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHH-SCCCSSSEEE
T ss_pred cCCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHh-cCCCcCCEEE
Confidence 4 246789999999999999999999999864 6888888887 46678888999998765532 222 245789
Q ss_pred EEECchhHHHH-HHHHHHhcCC
Q 023223 264 VLCGQKQMAEV-CYCFCLEFSA 284 (285)
Q Consensus 264 yiCGp~~m~~~-~~~~L~~~Gv 284 (285)
|+|||+.|++. +++.|.++|+
T Consensus 240 yvCGp~~m~~~~~~~~L~~~G~ 261 (270)
T 2cnd_A 240 LACGPPPMIQFAISPNLEKMKY 261 (270)
T ss_dssp EEECCHHHHHTTTHHHHHTTTC
T ss_pred EEECCHHHHHHHHHHHHHHcCC
Confidence 99999999997 5899999987
No 8
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=2.6e-37 Score=268.06 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=181.0
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~- 131 (285)
.|..++|++++.+++++++++|+ ++. +.|+||||+.|+++.. ...|+|||++.|. ++.++|+||.++
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~l~~~v~~~~~ 72 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-APV-----LPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD 72 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CCC-----CCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CCC-----CCcCCCCcEEEEccCCCCeeeeeecccCCCC----CCcEEEEEEEeCC
Confidence 58899999999999999999997 322 5799999999999853 4679999999986 688999999886
Q ss_pred CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223 132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~ 210 (285)
|.+|+||+++++||+|.+. ||+|. |.++.. ...++++||||||||||++++++++.+.+...+++|+|++|+.++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gP~G~-f~l~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~ 148 (248)
T 1fdr_A 73 GKLSPRLAALKPGDEVQVVSEAAGF-FVLDEV---PHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAAD 148 (248)
T ss_dssp CSSHHHHHTCCTTCEEEEESSCBCC-CSGGGS---CCCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGG
T ss_pred CchhhHHHhCCCcCEEEEecCCcce-eEcCCC---CCCceEEEEEecccHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHH
Confidence 6899999999999999999 99998 766521 136899999999999999999999876555689999999999999
Q ss_pred cccHHHHHHHHH---CCCEEEEEeeCCCCCCCccccccchHHHHhhh------cCCCCCcEEEEECchhHHHHHHHHH-H
Q 023223 211 MAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK------IFNPQGTGVVLCGQKQMAEVCYCFC-L 280 (285)
Q Consensus 211 ~~~~~~l~~l~~---~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~------~~~~~~~~vyiCGp~~m~~~~~~~L-~ 280 (285)
++|.++|++|.. .++++++++++++. +.+..|++++.+.+... ..+..+..+|+|||++|++.+++.| .
T Consensus 149 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~ 227 (248)
T 1fdr_A 149 LSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_dssp CTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHH
Confidence 999999999986 47999988887643 34568899887654210 1234678999999999999999999 8
Q ss_pred hcCC
Q 023223 281 EFSA 284 (285)
Q Consensus 281 ~~Gv 284 (285)
++|+
T Consensus 228 ~~G~ 231 (248)
T 1fdr_A 228 TRQM 231 (248)
T ss_dssp HHCC
T ss_pred HcCC
Confidence 8886
No 9
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.7e-37 Score=272.36 Aligned_cols=218 Identities=21% Similarity=0.381 Sum_probs=182.8
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-------------------------------CC
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-------------------------------VG 103 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-------------------------------~~ 103 (285)
.+..++|++++.+++++++++|+.++.. .+.|+|||||.|+++. ..
T Consensus 8 ~~~~~~V~~~~~~t~~~~~l~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 84 (290)
T 2r6h_A 8 KEWECEVLSNKNVSTFIKEFVVKLPEGE---TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEE 84 (290)
T ss_dssp CEEEEEEEEEEESSSSEEEEEEECSTTC---CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSC
T ss_pred eEEEEEEEEeeecCCCeEEEEEEcCCCC---ccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCC
Confidence 3457999999999999999999987532 2569999999999874 24
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe----------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCC
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV----------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDE 167 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~ 167 (285)
..|+|||++.|.. .+.++|+||.+ .|.+|+||+++++||+|.+.||+|. |.+. +.
T Consensus 85 ~~R~ySi~s~~~~---~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~-----~~ 155 (290)
T 2r6h_A 85 TVRAYSMANYPAE---GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD-FHIQ-----DT 155 (290)
T ss_dssp EEEEEECCSCTTC---CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC-CCCC-----SS
T ss_pred cceeeeccCCCCC---CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC-CcCC-----CC
Confidence 5789999999974 68999999962 3789999999999999999999999 4443 35
Q ss_pred CCeEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHH--CCCEEEEEeeCC--CCCCCccc
Q 023223 168 YPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQP--DGNWSGET 242 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~~~v~~~~s~~--~~~~~~~~ 242 (285)
.++++||||||||||+++|+++++.. ....+++|+|++|+.++++|+++|++|.. .+++++++++++ ++.|.+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~ 235 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYV 235 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCB
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCee
Confidence 78999999999999999999987754 34689999999999999999999999976 478999999875 45788889
Q ss_pred cccchHHHHhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 243 GYVQAAFSRAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 243 g~v~~~~~~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|++++.+.+... .....+..+|+|||+.|++.+++.|.++|+
T Consensus 236 g~v~~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~ 279 (290)
T 2r6h_A 236 GFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGV 279 (290)
T ss_dssp SCHHHHHHHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred EecCHHHHHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 999987754321 122346789999999999999999999886
No 10
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=1.7e-37 Score=278.57 Aligned_cols=223 Identities=20% Similarity=0.307 Sum_probs=183.5
Q ss_pred CCCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CC
Q 023223 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA 119 (285)
Q Consensus 52 ~~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~ 119 (285)
.+..+..++|++++.+++ ++++++|+.++. +.|+||||+.|++++. ..+|+|||+|.|... .+
T Consensus 33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~ 107 (314)
T 1fnb_A 33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD 107 (314)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-----CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence 345667899999999997 899999997653 5789999999998752 247899999998521 12
Q ss_pred CCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223 120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (285)
Q Consensus 120 ~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~ 189 (285)
.+.++|+||.+ .|.+|+||+++++||+|.+.||+|++|.+.. +..++++|||||||||||++|+++
T Consensus 108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~ 183 (314)
T 1fnb_A 108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPK----DPNATIIMLGTGTGIAPFRSFLWK 183 (314)
T ss_dssp SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHHH
T ss_pred CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEeCCccHHHHHHHHHH
Confidence 58999999974 3788999999999999999999999765531 246899999999999999999999
Q ss_pred hhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCC
Q 023223 190 GFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN 257 (285)
Q Consensus 190 ~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~ 257 (285)
++..+. ..+++|+|++|+.++++|+++|++|..+ ++++++++++++++|.+..|++++.+.+... ...
T Consensus 184 ~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~ 263 (314)
T 1fnb_A 184 MFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLK 263 (314)
T ss_dssp HHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTT
T ss_pred HHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHh
Confidence 875431 4689999999999999999999999873 6899999999888888889999887664211 122
Q ss_pred CCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 258 PQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 258 ~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
..+..+|+|||+.|++++.+.|.+.+
T Consensus 264 ~~~~~vyvCGp~~m~~~v~~~L~~~~ 289 (314)
T 1fnb_A 264 KDNTYVYMCGLKGMEKGIDDIMVSLA 289 (314)
T ss_dssp STTEEEEEEECTTHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 25788999999999999998887753
No 11
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.5e-37 Score=278.40 Aligned_cols=224 Identities=20% Similarity=0.272 Sum_probs=179.5
Q ss_pred cCCCCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--------CeeeeeeecCCCCCC
Q 023223 51 QDTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFA 117 (285)
Q Consensus 51 ~~~~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--------~~~~~~si~s~p~~~ 117 (285)
..+..+..++|++++.++ +++++|+|+.++. +.|+|||||.|++++. ..+|+|||+|.|...
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 97 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD 97 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC-----CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence 345667899999999999 8999999998643 6899999999999864 257999999998631
Q ss_pred C-CCCeEEEEEEEe--------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhH
Q 023223 118 S-ASGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP 182 (285)
Q Consensus 118 ~-~~~~l~l~Vk~~--------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP 182 (285)
. +.+.++|+||.+ .|.+|+||+++++||+|.+.||+|.+|.... .+..++++||||||||||
T Consensus 98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---~~~~~~~vlIagGtGIaP 174 (311)
T 3lo8_A 98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---EDPNATHIMIATGTGVAP 174 (311)
T ss_dssp TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---SCTTCEEEEEEEGGGGHH
T ss_pred CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---cCCCCCEEEEECCEEHHH
Confidence 1 247999999975 3789999999999999999999999654431 125689999999999999
Q ss_pred HHHHHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh
Q 023223 183 IRSLIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK 254 (285)
Q Consensus 183 ~~sil~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~ 254 (285)
+++++++++..+. ..+++|+|++|+.++++|+++|++|... +++++++++++++.|.+..|++++.+.+...
T Consensus 175 ~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~ 254 (311)
T 3lo8_A 175 FRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD 254 (311)
T ss_dssp HHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHH
Confidence 9999999876432 3689999999999999999999999874 7899999999988898889999887765311
Q ss_pred -c--CCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 255 -I--FNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 255 -~--~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
. ....+..+|+|||+.|++++++.|.+.
T Consensus 255 ~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~ 285 (311)
T 3lo8_A 255 EIFKLLDGGAHIYFCGLKGMMPGIQDTLKKV 285 (311)
T ss_dssp HHHHHHHTTCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHhhcCCcEEEEECCHHHHHHHHHHHHHH
Confidence 0 012568999999999999999988765
No 12
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=6e-37 Score=277.61 Aligned_cols=216 Identities=21% Similarity=0.323 Sum_probs=185.6
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G 132 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G 132 (285)
..+..++|++++.+++++++++|+.++.. ....|+||||+.|++++....|+|||++.|. ++.++|+||.++ |
T Consensus 106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~----~~~l~~~vk~~~~G 179 (338)
T 1krh_A 106 IHHFEGTLARVENLSDSTITFDIQLDDGQ--PDIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQG 179 (338)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEECTTC--CCCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTC
T ss_pred ceEEEEEEEEEEEcCCCEEEEEEEeCCCC--CCCCcCCCCeEEEEcCCCCccccccccCCCC----CCeEEEEEEEcCCC
Confidence 45778999999999999999999986531 1267999999999999767789999999986 689999999986 6
Q ss_pred cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223 133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (285)
Q Consensus 133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~ 211 (285)
.+|+||+ ++++||+|.++||+|+ |.+.. ..++++||||||||||+++|++++...+...+++|+|++|+.+++
T Consensus 180 ~~S~~L~~~l~~Gd~v~v~gP~G~-f~~~~-----~~~~~vliagGtGiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~ 253 (338)
T 1krh_A 180 KMSEYLSVQAKAGDKMSFTGPFGS-FYLRD-----VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDL 253 (338)
T ss_dssp HHHHHHHTTCCTTCEEEEEEEECS-CSCCC-----CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGC
T ss_pred CchhhHhhccCCCCEEEEECCccc-eEeCC-----CCceEEEEEccccHhHHHHHHHHHHHcCCCCeEEEEEEeCCHHHh
Confidence 7999996 7999999999999999 54542 348999999999999999999999876667899999999999999
Q ss_pred ccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 212 ~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|.++|++|.. .++++++++++++..|. ..|++++.+.+. ...+ .+..+|+|||+.|++.+++.|.++|+
T Consensus 254 ~~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~-~~~~-~~~~vy~CGp~~m~~~v~~~l~~~G~ 325 (338)
T 1krh_A 254 VALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYD-WLNG-GEVDVYLCGPVPMVEAVRSWLDTQGI 325 (338)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGG-GGGG-GCSEEEEEEEHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHh-hccc-CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999999986 38999999998777775 688998876632 1222 56789999999999999999999886
No 13
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=7.7e-37 Score=282.53 Aligned_cols=218 Identities=17% Similarity=0.257 Sum_probs=184.1
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS 129 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~ 129 (285)
..|.+++|++++.+++++++++|+.++... ...|+|||||.|+++..+ ..|+|||++.|. ++.++|+||.
T Consensus 150 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~ 223 (396)
T 1gvh_A 150 EGTRDFRIVAKTPRSALITSFELEPVDGGA--VAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKR 223 (396)
T ss_dssp SSEEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEEC
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCeEEEEecCCCCccceeecceeccCCC----CCeEEEEEEE
Confidence 468999999999999999999999865432 257999999999998433 479999999986 6789999999
Q ss_pred eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (285)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~ 207 (285)
.+ |.+|+||++ +++||+|.++||+|. |.++. +..++++||||||||||+++|++++...+...+++++|++|+
T Consensus 224 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~~~~~~~v~l~~~~r~ 298 (396)
T 1gvh_A 224 EEGGQVSNWLHNHANVGDVVKLVAPAGD-FFMAV----ADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAEN 298 (396)
T ss_dssp CTTCHHHHHHHHTCCTTCEEEEEEEECS-CCCCC----CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC
T ss_pred cCCCcchHHHHhcCCCCCEEEEEcCCcc-eECCC----CCCCCEEEEecchhHhHHHHHHHHHHhcCCCCcEEEEEEeCC
Confidence 85 789999996 999999999999996 76642 357899999999999999999999987666789999999999
Q ss_pred ccccccHHHHHHHHHC--CCEEEEEeeCCCCCC-----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH
Q 023223 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL 280 (285)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~ 280 (285)
.++++|+++|++|..+ +++++++++++++.| ++..|+++....+. .....+..+|+|||++|++.+++.|.
T Consensus 299 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~--~~~~~~~~vyvCGp~~m~~~v~~~L~ 376 (396)
T 1gvh_A 299 GDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG--AFSDPTMQFYLCGPVGFMQFTAKQLV 376 (396)
T ss_dssp TTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS--CCCCTTCEEEEESCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhh--ccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999874 789998898876543 45678888754432 11123678999999999999999999
Q ss_pred hcCC
Q 023223 281 EFSA 284 (285)
Q Consensus 281 ~~Gv 284 (285)
++|+
T Consensus 377 ~~Gv 380 (396)
T 1gvh_A 377 DLGV 380 (396)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9987
No 14
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=1.5e-36 Score=281.22 Aligned_cols=217 Identities=17% Similarity=0.289 Sum_probs=182.9
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-C---CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-V---GKPTFLAIASPPSFASASGAFEFLVKS 129 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-~---~~~~~~si~s~p~~~~~~~~l~l~Vk~ 129 (285)
..|.+++|++++.+++++++++|+.+++.. ...|+|||||.|+++. . ...|+|||++.|. ++.++|+||.
T Consensus 152 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~ 225 (403)
T 1cqx_A 152 KGWRTFVIREKRPESDVITSFILEPADGGP--VVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKR 225 (403)
T ss_dssp SSCEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEEC
T ss_pred CcceeEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCcceeecceecCCCC----CCeEEEEEEE
Confidence 468899999999999999999999765432 2579999999999982 2 2479999999986 6889999999
Q ss_pred eC------CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEE
Q 023223 130 VA------GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY 202 (285)
Q Consensus 130 ~~------G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~ 202 (285)
++ |.+|+||+ ++++||+|.++||+|. |.++. +..++++||||||||||+++|++++.. +...+++++
T Consensus 226 ~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~-~~~~~v~l~ 299 (403)
T 1cqx_A 226 EGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FHIDV----DAKTPIVLISGGVGLTPMVSMLKVALQ-APPRQVVFV 299 (403)
T ss_dssp CCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CSCCT----TCCSCEEEEESSCCHHHHHHHHHHHTC-SSCCCEEEE
T ss_pred CCCCCCCCCeehHHHhhCCCCCCEEEEecCccC-cccCC----CCCCCEEEEEecccHhhHHHHHHHHHh-CCCCcEEEE
Confidence 84 78999999 5999999999999996 76642 356899999999999999999999976 566889999
Q ss_pred EccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCC-----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHH
Q 023223 203 YGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC 275 (285)
Q Consensus 203 ~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~ 275 (285)
|++|+.++++|+++|++|..+ +++++++++++.+.| ++..|+++....+... .. .+..+|+|||++|++.+
T Consensus 300 ~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~-~~-~~~~vyvCGp~~m~~~v 377 (403)
T 1cqx_A 300 HGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSI-LL-PDADYYICGPIPFMRMQ 377 (403)
T ss_dssp EEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHH-CC-TTCEEEEESSHHHHHHH
T ss_pred EEeCChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhcc-CC-CCCEEEEeCCHHHHHHH
Confidence 999999999999999999863 789999999876655 3567888875444211 12 26899999999999999
Q ss_pred HHHHHhcCC
Q 023223 276 YCFCLEFSA 284 (285)
Q Consensus 276 ~~~L~~~Gv 284 (285)
++.|.++|+
T Consensus 378 ~~~L~~~Gv 386 (403)
T 1cqx_A 378 HDALKNLGI 386 (403)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999987
No 15
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=2.1e-36 Score=266.19 Aligned_cols=214 Identities=18% Similarity=0.325 Sum_probs=179.4
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC---CCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VGKPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~---~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
.+..++|++++.+++++++++|+.++. +.|+||||+.|++++ ....|+|||++.|. ++.++|+||.++
T Consensus 15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~----~~~~~l~v~~~~ 85 (272)
T 2bgi_A 15 LPDAQTVTSVRHWTDTLFSFRVTRPQT-----LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAW----DEELEFYSIKVP 85 (272)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEECTTSCEEEEEEECCSCTT----CSEEEEEEECCT
T ss_pred EeEEEEEEEEEEcCCCEEEEEEeCCCC-----CccCCCCEEEEEeccCCCCeeeeeeeeccCCC----CCeEEEEEEEcc
Confidence 456899999999999999999997643 579999999999983 23579999999986 689999999975
Q ss_pred -CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223 132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (285)
Q Consensus 132 -G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~ 209 (285)
|.+|+||+++++||+|.++ ||+|. |.++.. ...++++||||||||||++++++++...+...+++|+|++|+.+
T Consensus 86 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~ 161 (272)
T 2bgi_A 86 DGPLTSRLQHIKVGEQIILRPKPVGT-LVIDAL---LPGKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVA 161 (272)
T ss_dssp TCTTHHHHTTCCTTCEEEEEEEEECS-CCGGGB---CCCSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSG
T ss_pred CCCchhHHHhCCCCCEEEEeeCCCCc-cccccc---ccCCeEEEEeecccHHHHHHHHHHHHhcCCCCcEEEEEEeCCHH
Confidence 7899999999999999999 99998 666421 13689999999999999999999987665678999999999999
Q ss_pred ccccHHHHH-HHHH---------CCCEEEEEeeCCCCCCCccccccchHHHHhh---h--c--CCCCCcEEEEECchhHH
Q 023223 210 RMAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K--I--FNPQGTGVVLCGQKQMA 272 (285)
Q Consensus 210 ~~~~~~~l~-~l~~---------~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~--~--~~~~~~~vyiCGp~~m~ 272 (285)
+++|.++|+ +|.. .++++++++++++ .+..|++++.+.+.. . . .+..+..+|+|||+.|+
T Consensus 162 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~ 238 (272)
T 2bgi_A 162 ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFN 238 (272)
T ss_dssp GGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHH
T ss_pred HhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHH
Confidence 999999999 9976 4788888888763 346789988765421 0 1 12367899999999999
Q ss_pred HHHHHHHHhcCC
Q 023223 273 EVCYCFCLEFSA 284 (285)
Q Consensus 273 ~~~~~~L~~~Gv 284 (285)
+.+++.|.++|+
T Consensus 239 ~~v~~~l~~~G~ 250 (272)
T 2bgi_A 239 VDVMKVLESYGL 250 (272)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999985
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=1.1e-36 Score=273.59 Aligned_cols=217 Identities=18% Similarity=0.265 Sum_probs=178.9
Q ss_pred CCCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------
Q 023223 53 TTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------------- 102 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------------------------- 102 (285)
++....++|++++.++ .+++++.|+.+.. +.|.+|||+.|..++.
T Consensus 12 ~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 86 (316)
T 3jqq_A 12 VKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL-----FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNH 86 (316)
T ss_dssp SSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC-----CCCCTTCEEEECTTCC-------------------------
T ss_pred CCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC-----cceecCcEeEEECCCcccccccccccccccccccccccccc
Confidence 3445679999999998 7999999998543 7999999999998753
Q ss_pred -----------CeeeeeeecCCCCCCCCCCeEEEEEEEe-------------CCcchHHhhCCCCCCEEEEEeecCCCcc
Q 023223 103 -----------GKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKKGDVVEISQVMGRGFA 158 (285)
Q Consensus 103 -----------~~~~~~si~s~p~~~~~~~~l~l~Vk~~-------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~ 158 (285)
..+|+|||+|.|. ++.++|+||.. .|.+|++|+++++||+|.|+||+|. |.
T Consensus 87 ~~~~~~~~~g~~~~R~ySIaS~p~----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f~ 161 (316)
T 3jqq_A 87 NNIALSHIKKQRCARLYSISSSNN----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-FN 161 (316)
T ss_dssp ----------CCCCEEEEBCSCTT----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC-CC
T ss_pred cccccccCCCcccceeeecccCCC----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc-eE
Confidence 3578999999997 57899999974 2789999999999999999999998 76
Q ss_pred cCCCCCCC---CCCeEEEEEcCcchhHHHHHHHHhhccC----------CCCcEEEEEccCCccccccHHHHHHHHHC--
Q 023223 159 VDRIQPPD---EYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYGARNLKRMAYQDKFKEWESS-- 223 (285)
Q Consensus 159 ~~~~~~~~---~~~~~vliAgGtGIaP~~sil~~~~~~~----------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-- 223 (285)
++. + ..++++|||||||||||++|+++++... ...+++|+|++|+.++++|.++|++|..+
T Consensus 162 l~~----~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~ 237 (316)
T 3jqq_A 162 LPN----DAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYP 237 (316)
T ss_dssp CCT----THHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCT
T ss_pred cCC----cccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCC
Confidence 652 2 2689999999999999999999998643 24789999999999999999999999874
Q ss_pred -CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 224 -GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 224 -~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+++++++++++ ++|.+..|++++.+.+... .....+..+|+|||++|++++.+.|.+.|.
T Consensus 238 ~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~ 302 (316)
T 3jqq_A 238 NNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQ 302 (316)
T ss_dssp TTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC---
T ss_pred CcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 79999999987 5788899999988766321 111257899999999999999999999873
No 17
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=2e-36 Score=280.23 Aligned_cols=224 Identities=23% Similarity=0.319 Sum_probs=185.4
Q ss_pred CCCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCC-C
Q 023223 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-A 119 (285)
Q Consensus 52 ~~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~-~ 119 (285)
.+..+..++|++++.+++ ++++|+|+.++. .+.|+||||+.|++++. ..+|+|||++.|.... +
T Consensus 118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~ 193 (402)
T 2b5o_A 118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG----DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMED 193 (402)
T ss_dssp CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS----CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTS
T ss_pred cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC----CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCC
Confidence 344567899999999999 999999998653 26899999999998752 2468999999986311 2
Q ss_pred CCeEEEEEEEe-----------CCcchHHhhCCCCC-CEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHH
Q 023223 120 SGAFEFLVKSV-----------AGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187 (285)
Q Consensus 120 ~~~l~l~Vk~~-----------~G~~s~~L~~l~~G-d~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil 187 (285)
++.++|+||.. .|.+|+||+++++| |.|.+.||+|++|.++. +..++++|||||||||||++++
T Consensus 194 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~----~~~~~vvlIAgGtGIaP~~s~l 269 (402)
T 2b5o_A 194 NKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPD----DEDATVVMLATGTGIAPFRAFL 269 (402)
T ss_dssp SCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCS----CTTCEEEEEEEGGGGHHHHHHH
T ss_pred CCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCc----cCCCCEEEEEcccCHHHHHHHH
Confidence 57899999982 37899999999999 99999999999765542 2468999999999999999999
Q ss_pred HHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----c
Q 023223 188 ESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----I 255 (285)
Q Consensus 188 ~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~ 255 (285)
++++..+. ..+++|+|++|+.++++|+++|++|... +++++++++++++.|.+..+++++.+.+... .
T Consensus 270 ~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~ 349 (402)
T 2b5o_A 270 WRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEM 349 (402)
T ss_dssp HHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHH
Confidence 99876542 4789999999999999999999999873 7999999999888888888999887765211 1
Q ss_pred CCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 256 FNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 256 ~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
....+..+|+|||++|++.+.+.|.+.|
T Consensus 350 l~~~~~~vyvCGP~~M~~~v~~~L~~~g 377 (402)
T 2b5o_A 350 IQKPNTHVYMCGLKGMQPPIDETFTAEA 377 (402)
T ss_dssp HTSTTEEEEEEECGGGHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCHHHHHHHHHHHHHHH
Confidence 2234689999999999999999998765
No 18
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=9.7e-37 Score=265.99 Aligned_cols=214 Identities=21% Similarity=0.307 Sum_probs=178.9
Q ss_pred CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA- 131 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~- 131 (285)
.|..++|++++.+++++++++|+.++. ..|+||||+.|+++..+ ..|+|||++.|. ++.++|+||.++
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~~~~~i~~~~~ 72 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG-----LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPD 72 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC-----CccCCCCEEEEEecCCCCceeeeeEeecCCC----CCeEEEEEEEeCC
Confidence 578999999999999999999997643 57999999999998543 579999999986 689999999875
Q ss_pred CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223 132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (285)
Q Consensus 132 G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~ 210 (285)
|.+|++|+++++||+|.+. ||+|. |.++.. ...++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gp~G~-f~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~ 148 (257)
T 2qdx_A 73 GPLTSRLQHLKEGDELMVSRKPTGT-LVHDDL---LPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSE 148 (257)
T ss_dssp CTTHHHHTTCCTTCEEEECSCCBCS-CCGGGB---CSCSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGG
T ss_pred CcchhHHHhCCCCCEEEEecCCCCC-ccCCcc---cCCCeEEEEEeceEHHHHHHHHHHHHhcCCCCeEEEEEEcCCHHH
Confidence 6899999999999999999 89998 666421 136899999999999999999998865444578999999999999
Q ss_pred cccHHHHH-HHHH---------CCCEEEEEeeCCCCCCCccccccchHHHHhh-----hc--CCCCCcEEEEECchhHHH
Q 023223 211 MAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK-----KI--FNPQGTGVVLCGQKQMAE 273 (285)
Q Consensus 211 ~~~~~~l~-~l~~---------~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~-----~~--~~~~~~~vyiCGp~~m~~ 273 (285)
++|.++|+ +|.. .++++++++++++ .+..|++++.+.+.. .. .+..+..+|+|||++|++
T Consensus 149 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~ 225 (257)
T 2qdx_A 149 LAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREP---FRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLE 225 (257)
T ss_dssp CTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSC---CSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHH
T ss_pred hHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCC---cccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHH
Confidence 99999999 8865 4788888888763 245788888765421 01 123678999999999999
Q ss_pred HHHHHHHhcCC
Q 023223 274 VCYCFCLEFSA 284 (285)
Q Consensus 274 ~~~~~L~~~Gv 284 (285)
.+++.|.++|+
T Consensus 226 ~v~~~l~~~G~ 236 (257)
T 2qdx_A 226 ETSAVLDSFGL 236 (257)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999986
No 19
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=3e-37 Score=271.27 Aligned_cols=215 Identities=21% Similarity=0.291 Sum_probs=175.5
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
..|.+++|++++.+++++++++|+.++. +.|+||||+.|+++..+ ..|+|||++.|. ++.++|+||.++
T Consensus 17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~~~~~v~~~~ 87 (271)
T 4fk8_A 17 SKFDTATVLSVHHWTDTLFSFTCTRDQA-----LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY----EEHLEFFSIKVQ 87 (271)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEECCCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSSEEEEEECCT
T ss_pred ccceeEEEEEEEEcCCCEEEEEEEcCCC-----CCcCCCCEEEEEccCCCceeeeeEeccCCCC----CCcEEEEEEEEC
Confidence 4689999999999999999999986643 68999999999998543 479999999986 678999999885
Q ss_pred -CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223 132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (285)
Q Consensus 132 -G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~ 209 (285)
|.+|++|+++++||+|.+. ||+|+ |.+... ...++++||||||||||++++++++.+.+...+++|+|++|+.+
T Consensus 88 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-~~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~ 163 (271)
T 4fk8_A 88 NGPLTSRLQHLKVGDPVLIGKKPTGT-LVADNL---LPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKG 163 (271)
T ss_dssp TCTTHHHHTTCCTTCEEEEESCCBCS-CCGGGB---CCCSEEEEEECGGGGHHHHHHTTCHHHHHHCSEEEEEECCCSHH
T ss_pred CCchhhHHhcCCCCCEEEEecCCCcc-eecCCc---CCCCeEEEEECCEEHHHHHHHHHHHHhcCCCCCEEEEEecCCHH
Confidence 6899999999999999999 99998 545421 25789999999999999999999987655567999999999999
Q ss_pred ccccHHHHHHHHHC----------CCEEEEEeeCCCCCCCccccccchHHHHhh---h--c--CCCCCcEEEEECchhHH
Q 023223 210 RMAYQDKFKEWESS----------GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K--I--FNPQGTGVVLCGQKQMA 272 (285)
Q Consensus 210 ~~~~~~~l~~l~~~----------~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~--~--~~~~~~~vyiCGp~~m~ 272 (285)
+++|.++|+++.++ +++++.++++++. +..|++++.+.+.. . . .+.++..+|+|||++|+
T Consensus 164 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~ 240 (271)
T 4fk8_A 164 ELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAML 240 (271)
T ss_dssp HHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHH
T ss_pred HHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHH
Confidence 99999999988764 4677777776543 45788887665421 0 1 23467899999999999
Q ss_pred HHHHHHHHhcCC
Q 023223 273 EVCYCFCLEFSA 284 (285)
Q Consensus 273 ~~~~~~L~~~Gv 284 (285)
+++++.|.++|+
T Consensus 241 ~~v~~~l~~~gv 252 (271)
T 4fk8_A 241 KDTTELLKKAGL 252 (271)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999987
No 20
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=8.5e-36 Score=266.21 Aligned_cols=219 Identities=19% Similarity=0.282 Sum_probs=177.9
Q ss_pred CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CCCC
Q 023223 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SASG 121 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~~~ 121 (285)
.....++|++++.+++ ++++++|+.++.. +.|+||||+.|.+++. ..+|+|||+|.|... .+++
T Consensus 19 ~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~ 94 (304)
T 2bmw_A 19 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN----LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK 94 (304)
T ss_dssp TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC----CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred CCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc----cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCC
Confidence 3456799999999999 8999999987532 5799999999998753 246999999988521 1268
Q ss_pred eEEEEEEEe-----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHh
Q 023223 122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190 (285)
Q Consensus 122 ~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~ 190 (285)
.++|+||.. .|.+|+||+++++||+|.+.||+|.+|.+.. +..++++||||||||||++++++++
T Consensus 95 ~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~~ 170 (304)
T 2bmw_A 95 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPD----DPEANVIMLAGGTGITPMRTYLWRM 170 (304)
T ss_dssp EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCS----CTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEecCccHHHHHHHHHHH
Confidence 999999972 3789999999999999999999999765531 2468999999999999999999998
Q ss_pred hccC---------CCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----
Q 023223 191 FSSK---------ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK---- 254 (285)
Q Consensus 191 ~~~~---------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~---- 254 (285)
+... ...+++|+|++|+.++++|+++|++|..+ +++++++++++++.|.+..+++++.+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~ 250 (304)
T 2bmw_A 171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 250 (304)
T ss_dssp HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence 7532 23689999999999999999999999873 7899999999877787778888877654211
Q ss_pred cCCCCCcEEEEECchhHHHHHHHHHH
Q 023223 255 IFNPQGTGVVLCGQKQMAEVCYCFCL 280 (285)
Q Consensus 255 ~~~~~~~~vyiCGp~~m~~~~~~~L~ 280 (285)
.....+..+|+|||+.|++.++++|.
T Consensus 251 ~~~~~~~~vyvCGp~~m~~~v~~~l~ 276 (304)
T 2bmw_A 251 LIKNQKTHTYICGPPPMEEGIDAALS 276 (304)
T ss_dssp HHTSTTEEEEEEECTTHHHHHHHHHH
T ss_pred HhhcCCcEEEEECCHHHHHHHHHHHH
Confidence 11235678999999999999877764
No 21
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=1.7e-35 Score=273.92 Aligned_cols=216 Identities=18% Similarity=0.307 Sum_probs=180.0
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcc--cccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCCCCCeEEE
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDI--ASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASGAFEF 125 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l--~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~~~~~l~l 125 (285)
..|++++|++++.+++++++++|+.++...+ ..+.|+||||+.|+++.. ...|+|||++.|. ++.++|
T Consensus 147 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~----~~~~~i 222 (399)
T 4g1v_A 147 PGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST----KNGLRF 222 (399)
T ss_dssp CSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC----TTCEEE
T ss_pred CcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC----CCeEEE
Confidence 4789999999999999999999998765332 112799999999998532 3579999999997 688999
Q ss_pred EEEEe-------CCcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCC
Q 023223 126 LVKSV-------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197 (285)
Q Consensus 126 ~Vk~~-------~G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~ 197 (285)
+||.. .|.+|+||+ ++++||+|.++||+|. |.++........++++||||||||||+++|+++++..+...
T Consensus 223 ~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~~ 301 (399)
T 4g1v_A 223 AVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGD-FAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPNR 301 (399)
T ss_dssp EEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECS-CCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTTS
T ss_pred EEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccc-eeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCCC
Confidence 99993 478999997 8999999999999999 77753100014789999999999999999999998777778
Q ss_pred cEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHH
Q 023223 198 DVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC 275 (285)
Q Consensus 198 ~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~ 275 (285)
+++++|++|+.++++|.++|+++..+ +++++++++++. |+++...... ... .+..+|+|||++|++.+
T Consensus 302 ~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~--~~~-~~~~vyvCGp~~m~~~v 371 (399)
T 4g1v_A 302 PIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKE--KSP-AHADVYTCGSLAFMQAM 371 (399)
T ss_dssp CEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHH--HSC-SSCEEEEEECHHHHHHH
T ss_pred CEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHh--hCC-CCCEEEEECCHHHHHHH
Confidence 99999999999999999999999864 788888888753 7887654442 122 27899999999999999
Q ss_pred HHHHHhcCC
Q 023223 276 YCFCLEFSA 284 (285)
Q Consensus 276 ~~~L~~~Gv 284 (285)
++.|.++|+
T Consensus 372 ~~~L~~~Gv 380 (399)
T 4g1v_A 372 IGHLKELEH 380 (399)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999987
No 22
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=1.2e-35 Score=260.06 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=171.5
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~ 134 (285)
.++|++++.+++++++++|+.++. ...|+||||+.|++++. ...|+|||++.|.. ++.++|+||.++ |.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~ 79 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLV----DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTG 79 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGG----GGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSH
T ss_pred ceEEEEEEEecCCEEEEEEEcCcc----cccCCCCceEEEEcCCCCceeeEEEEeeeecCC---CCEEEEEEEEecCCch
Confidence 799999999999999999997542 25799999999999863 56799999998864 789999999964 789
Q ss_pred hHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223 135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (285)
Q Consensus 135 s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (285)
|+||+++++||+|.+.||+|++|.++.. ...++++||||||||||+++|++++.+.+ .+++|+|++|+.++++|+
T Consensus 80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~---~~~~~~lliagGtGitP~~s~l~~l~~~~--~~v~l~~~~r~~~~~~~~ 154 (262)
T 1ep3_B 80 TYKLSKLESGAKVDVMGPLGNGFPVAEV---TSTDKILIIGGGIGVPPLYELAKQLEKTG--CQMTILLGFASENVKILE 154 (262)
T ss_dssp HHHHHTCCTTCEEEEEEEESBCCCCTTC---CTTSEEEEEEEGGGSHHHHHHHHHHHHHT--CEEEEEEEESSGGGCCCH
T ss_pred HHHHhcCCCCCEEEEEcccCCCccCCCc---cCCCeEEEEECcCcHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhH
Confidence 9999999999999999999997877521 13689999999999999999999987643 789999999999999999
Q ss_pred HHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 215 ~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++|++|... +++++ + +++|.+..|++++.+.+. . .+...+|+|||+.|++++++ |.++|+
T Consensus 155 ~el~~l~~~--~~~~~-~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~-l~~~gv 214 (262)
T 1ep3_B 155 NEFSNLKNV--TLKIA-T--DDGSYGTKGHVGMLMNEI--D--FEVDALYTCGAPAMLKAVAK-KYDQLE 214 (262)
T ss_dssp HHHHTSTTE--EEEEE-E--TTCSSSEESCHHHHHHHC--C--SCCSEEEEESCHHHHHHHHH-HTTTCS
T ss_pred HHHhhhccC--cEEEE-E--CCCCCcceeehHHHHHhh--c--cCCCEEEEECCHHHHHHHHH-HHhCCC
Confidence 999886543 44433 2 345777889999866552 2 23578999999999999999 999886
No 23
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=6.1e-35 Score=261.88 Aligned_cols=223 Identities=22% Similarity=0.314 Sum_probs=178.6
Q ss_pred CCeeeeEEEEEeecCCC--------------eEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------Ceee
Q 023223 54 TVWTPTPLAEISPAAES--------------LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------GKPT 106 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~--------------~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------~~~~ 106 (285)
.....++|++++.++++ +++++|+.++. .+.|+||||+.|++++. ..+|
T Consensus 19 ~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R 94 (314)
T 2rc5_A 19 SNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS----AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVR 94 (314)
T ss_dssp TBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT----TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCE
T ss_pred CCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC----cCcccCCCEEEEECCCCccccCccchhhcCCCce
Confidence 34567999999999998 99999997643 25799999999999863 2568
Q ss_pred eeeecCCCCCC-CCCCeEEEEEEEe-----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEE
Q 023223 107 FLAIASPPSFA-SASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF 174 (285)
Q Consensus 107 ~~si~s~p~~~-~~~~~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vli 174 (285)
+|||+|.|... .+++.++|+||.+ .|.+|+||+++++||+|.+.||+|.+|.+... +..++++||
T Consensus 95 ~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~---~~~~~~vlI 171 (314)
T 2rc5_A 95 LYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNT---DFSGDIMFL 171 (314)
T ss_dssp EEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSS---CBCSCEEEE
T ss_pred eeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCC---CCCCCEEEE
Confidence 99999998521 0268999999986 36689999999999999999999996644310 246889999
Q ss_pred EcCcchhHHHHHHHHhhccC---CCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCC-CCccccccchH
Q 023223 175 ATGSGISPIRSLIESGFSSK---ERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGN-WSGETGYVQAA 248 (285)
Q Consensus 175 AgGtGIaP~~sil~~~~~~~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~-~~~~~g~v~~~ 248 (285)
||||||||+++|++++...+ ...+++|+|++|+.++++|+++|++|..+ +++++++++++++. |.+..|++++.
T Consensus 172 agGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~ 251 (314)
T 2rc5_A 172 ATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHR 251 (314)
T ss_dssp EEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHH
T ss_pred ECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHH
Confidence 99999999999999987643 24689999999999999999999999763 89999999987554 47888898887
Q ss_pred HHHhhh----cCCCCCcEEEEE-CchhHHHHHHHHHHhcCC
Q 023223 249 FSRAKK----IFNPQGTGVVLC-GQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 249 ~~~~~~----~~~~~~~~vyiC-Gp~~m~~~~~~~L~~~Gv 284 (285)
+.+... .....+ .+|+| ||+.|++.+++.|.+.|+
T Consensus 252 l~~~~~~l~~~~~~~~-~~yvCGGp~~m~~~v~~~L~~~g~ 291 (314)
T 2rc5_A 252 VREQAEAVKKILNGGG-RFYICGGPKGMEKGVIEEIQKISG 291 (314)
T ss_dssp HHHTHHHHHHHHHHTC-EEEEEESSTTTHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHhhcCC-eEEEeCCcHHHHHHHHHHHHHHHh
Confidence 655211 111123 35999 999999999999998764
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=2.5e-34 Score=258.71 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=167.2
Q ss_pred CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223 52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA 131 (285)
Q Consensus 52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~ 131 (285)
++..|..++|++++.+++++++++|+.++... ...|+||||+.|++++ +..|+|||++.|.. .+.++|+||.++
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~-g~~R~ySi~s~~~~---~~~l~i~Vk~~~ 77 (321)
T 2pia_A 4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAP--LPPFEAGANLTVAVPN-GSRRTYSLCNDSQE---RNRYVIAVKRDS 77 (321)
T ss_dssp TTTTCEEEEEEEEEEEETTEEEEEEECTTCCC--CCCCCTTCEEEEECTT-SCEEEEECCSCTTC---CSEEEEEEECCT
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCc--CCCCCCCCEEEEECCC-CCcEEEEeCCCCCC---CCeEEEEEEEec
Confidence 45678999999999999999999999876422 2479999999999985 47899999999874 689999999986
Q ss_pred -Cc-chHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223 132 -GS-TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (285)
Q Consensus 132 -G~-~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~ 208 (285)
|. +|+||+ ++++||+|.++||+|. |.++. ..++++|||||+||||+++|++++...+. .+++|+|++|+.
T Consensus 78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~-f~l~~-----~~~~~vliagG~GItP~~s~l~~l~~~~~-~~v~l~~~~r~~ 150 (321)
T 2pia_A 78 NGRGGSISFIDDTSEGDAVEVSLPRNE-FPLDK-----RAKSFILVAGGIGITPMLSMARQLRAEGL-RSFRLYYLTRDP 150 (321)
T ss_dssp TSCSHHHHHHHSCCTTCEEEECCCBCC-SCCCT-----TCSEEEEEEEGGGHHHHHHHHHHHHHHCS-SEEEEEEEESCG
T ss_pred CCcchhHHHHhcCCCCCEEEEeCCccc-cccCC-----CCCCEEEEEecccHhHHHHHHHHHHHcCC-CcEEEEEEECCh
Confidence 55 899999 8999999999999997 77652 46899999999999999999999986543 789999999999
Q ss_pred cccccHHHHHHHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh
Q 023223 209 KRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281 (285)
Q Consensus 209 ~~~~~~~~l~~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~ 281 (285)
++++|.++|++|.. .+++++ .++... +....+++.+.+ ...+..+|+|||++|++.+++.|.+
T Consensus 151 ~~~~~~~el~~l~~~~~~~~~--~~~~~~---~g~~~~~~ll~~-----~~~~~~vyvCGP~~m~~~v~~~l~~ 214 (321)
T 2pia_A 151 EGTAFFDELTSDEWRSDVKIH--HDHGDP---TKAFDFWSVFEK-----SKPAQHVYCCGPQALMDTVRDMTGH 214 (321)
T ss_dssp GGCTTHHHHHSTTTTTTEEEE--ECTTCT---TSCCCHHHHHSS-----CCTTEEEEEESCHHHHHHHHHHTTT
T ss_pred hhhHHHHHHhcCccCCeEEEE--ECCCcc---cCccCHHHHhcc-----cCCCCEEEEECCHHHHHHHHHHHHh
Confidence 99999999998852 255554 343221 112233332211 2356889999999999999998875
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.97 E-value=4.5e-30 Score=223.41 Aligned_cols=205 Identities=6% Similarity=-0.021 Sum_probs=155.0
Q ss_pred CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSV 130 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~ 130 (285)
..|..++|++++.+++++++++|+.++...+ ..++|||||.|+++.. ...|+|||++.+ .+.++|.|+.+
T Consensus 6 ~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~--~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~-----~~~~~i~~~~~ 78 (252)
T 2gpj_A 6 PAPRELEVIRSTYITPHMLRITLGGAGLAGF--PADQESAYIKLLFPQAGERPLMRTYTIRQQR-----DDEIDVDFVLH 78 (252)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEESGGGTTC--CSCCTTCEEEEEECCTTSCCEEEEEECCEEE-----TTEEEEEEECC
T ss_pred CCcEEEEEEEEEEcCCCEEEEEEEcCChhhc--CCCCCCCeEEEEcccCCCCCCCCceeeeccC-----CCEEEEEEEEe
Confidence 4678999999999999999999997643211 2589999999999853 467999999976 25788888877
Q ss_pred C--CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223 131 A--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (285)
Q Consensus 131 ~--G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~ 208 (285)
+ |.+|+||+++++||+|.+.||.|. |.++. ..++++|||||||||||++|++++.+ ..++.+++++++.
T Consensus 79 ~~~G~~S~~l~~l~~Gd~l~v~gP~G~-f~l~~-----~~~~~lliagGtGitPi~s~l~~l~~---~~~~~~~~~~~~~ 149 (252)
T 2gpj_A 79 DTDGPASSWAKTAQVGELIQIGGPGLK-KLINF-----EADWFLLAGDMTALPAISVNLAKLPN---NAVGYAVIEVLSE 149 (252)
T ss_dssp SSCCHHHHHHHHCCTTCEEEEEEEECC-CCCCS-----SSSEEEEEEEGGGHHHHHHHHHHSCT---TCEEEEEEEESSG
T ss_pred CCCCcHHHHHhhCCCCCEEEEecCCCC-CcCCC-----CCceEEEEcchhhHHHHHHHHHhCCC---CCcEEEEEEECCH
Confidence 4 689999999999999999999996 76652 45789999999999999999999832 3578888889988
Q ss_pred cccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH-hcCC
Q 023223 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL-EFSA 284 (285)
Q Consensus 209 ~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~-~~Gv 284 (285)
+++...+ . ..+++++++.+.... +.+ ..+.+.+.+ ......+..+|+|||++|++++++.|. ++|+
T Consensus 150 ~d~~~l~---~--~~~~~v~~~~~~~~~-~~g--~~~~~~l~~--~~~~~~~~~vy~CGP~~m~~av~~~l~~~~G~ 216 (252)
T 2gpj_A 150 ADIQPLV---H--PEHVELHWVINPEAD-PEG--RPLVERIAQ--LPWLAGEPAVWIACEFNSMRALRRHFKQAHAL 216 (252)
T ss_dssp GGCCCCC---C--CTEEEEEEEECSSCC-TTC--HHHHHHHTT--SCCCSSCEEEEEEEEHHHHHHHHHHHHHHCCC
T ss_pred HHhhccc---C--CCCcEEEEEeCCCCC-ccc--HHHHHHHHh--ccCCCCCcEEEEEcCHHHHHHHHHHHHHhcCC
Confidence 8765321 1 125777776655422 111 123333222 111124678999999999999999998 7886
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.96 E-value=8e-28 Score=220.28 Aligned_cols=168 Identities=20% Similarity=0.355 Sum_probs=136.4
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI 173 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl 173 (285)
.+|+|||+|+|.. +++.++|+||.+ .|.+|+||++ +++||+|.+.+|.|..|.+.. +..++++|
T Consensus 159 ~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~----~~~~piim 232 (374)
T 1ddg_A 159 TPRLYSIASSQAE--VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA----NPETPVIM 232 (374)
T ss_dssp CCEEEEBCCCTTT--SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCS----STTSCEEE
T ss_pred CCccceecCCCCC--CCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCC----CCCCCEEE
Confidence 4588999999852 158999999986 3789999997 999999999996654487752 34689999
Q ss_pred EEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHH
Q 023223 174 FATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFS 250 (285)
Q Consensus 174 iAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~ 250 (285)
||||||||||++++++....+...+++|+||+|+. ++++|++||++|.+. .++++.++|+++. .++|+++.+.
T Consensus 233 Ia~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Srd~~----~k~yVq~~l~ 308 (374)
T 1ddg_A 233 IGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQK----EKVYVQDKLR 308 (374)
T ss_dssp ECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSSS----SCCCHHHHHH
T ss_pred EECCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEEecCCC----CCccHHHHHH
Confidence 99999999999999998876667899999999998 789999999999886 4588888888653 4678887766
Q ss_pred Hhhh----cCCCCCcEEEEEC-chhHHHHHHHHHHhc
Q 023223 251 RAKK----IFNPQGTGVVLCG-QKQMAEVCYCFCLEF 282 (285)
Q Consensus 251 ~~~~----~~~~~~~~vyiCG-p~~m~~~~~~~L~~~ 282 (285)
+... .. .++..+|+|| |+.|++++.+.|.+.
T Consensus 309 ~~~~~l~~~l-~~~~~vYvCG~p~~M~~~V~~~L~~i 344 (374)
T 1ddg_A 309 EQGAELWRWI-NDGAHIYVCGDANRMAKDVEQALLEV 344 (374)
T ss_dssp HTHHHHHHHH-HTTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred HhHHHHHHHH-hCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 4211 11 1467899999 999999998888654
No 27
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.94 E-value=1.1e-25 Score=209.86 Aligned_cols=172 Identities=20% Similarity=0.314 Sum_probs=136.1
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCe
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~ 170 (285)
..+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++++||+|.+.+|.+..|.+.. +..++
T Consensus 208 l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~----~~~~p 281 (435)
T 1f20_A 208 LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR----NPQVP 281 (435)
T ss_dssp CCCEEEECCSCTTT--STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCS----CTTSC
T ss_pred CCCccccccCCccc--CCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCC----CCCCC
Confidence 46789999999863 147899999864 1789999999999999999995443487752 34678
Q ss_pred EEEEEcCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccc
Q 023223 171 VLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGET 242 (285)
Q Consensus 171 ~vliAgGtGIaP~~sil~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~ 242 (285)
++|||||||||||++++++.+.. ....+++|+||+|+.+ +++|++||++|...+ ++++.++|++++.| +
T Consensus 282 iilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~~---k 358 (435)
T 1f20_A 282 CILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---K 358 (435)
T ss_dssp EEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---C
T ss_pred EEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCCC---C
Confidence 99999999999999999998753 3568899999999987 789999999998874 47888888875433 6
Q ss_pred cccchHHHHh-hh----cCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223 243 GYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEVCYCFCLEFS 283 (285)
Q Consensus 243 g~v~~~~~~~-~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~G 283 (285)
+|+++.+.+. .. .....+..+|+|||+.|++++.+.|.+.+
T Consensus 359 ~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~ 404 (435)
T 1f20_A 359 KYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIM 404 (435)
T ss_dssp CCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred cchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHH
Confidence 7888876543 11 11125678999999999999999987754
No 28
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.93 E-value=7.7e-26 Score=215.55 Aligned_cols=173 Identities=17% Similarity=0.289 Sum_probs=133.0
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe-----------C-CcchHHhhCC-----------CCCC-------EEEEEeec
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV-----------A-GSTAEVLCGL-----------KKGD-------VVEISQVM 153 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~-----------~-G~~s~~L~~l-----------~~Gd-------~v~i~gP~ 153 (285)
.+|+|||+|+|.. +++.++|+||.+ . |.+|+||+++ ++|+ .|.+.+|.
T Consensus 290 ~~R~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~ 367 (539)
T 2qtl_A 290 QPRPYSCASSSLF--HPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRT 367 (539)
T ss_dssp CCEEEECCSCTTT--STTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECS
T ss_pred cceEEeecCCccC--CCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeee
Confidence 4689999999852 168999999986 1 6789999986 8999 99999999
Q ss_pred CCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc------CCCCcEEEEEccCCc-cccccHHHHHHHHHC--C
Q 023223 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS------KERSDVRLYYGARNL-KRMAYQDKFKEWESS--G 224 (285)
Q Consensus 154 G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~------~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~ 224 (285)
|..|.+.. +..++++|||+|||||||++++++.... ....+++||||+|+. ++++|++||++|.+. .
T Consensus 368 g~~F~Lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~ 443 (539)
T 2qtl_A 368 TNSFHLPD----DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL 443 (539)
T ss_dssp CCCCCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS
T ss_pred CCCccCCc----cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC
Confidence 85687753 3467999999999999999999985421 146789999999999 699999999999886 4
Q ss_pred CEEEEEeeCCCC--CCCccccccchHHHHhhhc----CCCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223 225 VKIVPVLSQPDG--NWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQK-QMAEVCYCFCLEF 282 (285)
Q Consensus 225 ~~v~~~~s~~~~--~~~~~~g~v~~~~~~~~~~----~~~~~~~vyiCGp~-~m~~~~~~~L~~~ 282 (285)
++++.++|+++. .|.+.+|||++.+.+.... ....+..+|+|||+ .|++++.+.|.+.
T Consensus 444 ~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~i 508 (539)
T 2qtl_A 444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQI 508 (539)
T ss_dssp CEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 589999998654 4778899999887663211 11246789999996 9999999888753
No 29
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.93 E-value=5.2e-26 Score=209.37 Aligned_cols=183 Identities=21% Similarity=0.418 Sum_probs=142.8
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-----------CcchHHhhCCCCCCEEE--EEeecC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVE--ISQVMG 154 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~--i~gP~G 154 (285)
...+||++.+. + ...+|+|||+|+|.. +++.++|+|+.++ |.+|+||+++++||.|. +++|.|
T Consensus 156 ~~p~~~~l~~l-p-~l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g 231 (393)
T 4dql_A 156 EMKFSEFIALL-P-SIRPRYYSISSSPRV--DEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS 231 (393)
T ss_dssp CCCHHHHHHTS-C-BCCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred CCCHHHHHHhC-C-CCcceeeeccccccc--cCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence 56778888763 3 367899999999963 1478999998762 66899999999999998 689999
Q ss_pred CCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCC-ccccccHHHHHHHHHC-CCEEE
Q 023223 155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARN-LKRMAYQDKFKEWESS-GVKIV 228 (285)
Q Consensus 155 ~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~---~~~-~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~-~~~v~ 228 (285)
. |.+.. +..++++|||+|||||||++++++.. +.+ ...+++|+||+|+ .++++|++||++|.+. +++++
T Consensus 232 ~-F~lp~----~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l~l~ 306 (393)
T 4dql_A 232 E-FTLPK----DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLH 306 (393)
T ss_dssp C-CCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSCEEE
T ss_pred C-cccCc----cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCeEEE
Confidence 7 77752 34679999999999999999999842 222 3468999999999 5899999999999876 68999
Q ss_pred EEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECc-hhHHHHHHHHHHhc
Q 023223 229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQ-KQMAEVCYCFCLEF 282 (285)
Q Consensus 229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp-~~m~~~~~~~L~~~ 282 (285)
+++|+++.. .++|+++.+.+.... ...++..+|+||| +.|.++++++|.+.
T Consensus 307 ~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i 361 (393)
T 4dql_A 307 TAFSRMPNQ---PKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKS 361 (393)
T ss_dssp EEESSCTTS---CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEeCCCCC---CCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHH
Confidence 999985432 467888876553211 0125789999999 57778888887753
No 30
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.92 E-value=2.7e-24 Score=210.60 Aligned_cols=170 Identities=21% Similarity=0.329 Sum_probs=135.2
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeE
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~ 171 (285)
.+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++++||+|.+.+|.+..|.+.. +..+++
T Consensus 430 ~~R~YSIsSsp~~--~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~----~~~~pi 503 (688)
T 1tll_A 430 QPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR----NPQVPC 503 (688)
T ss_dssp CCEEEEBCSCTTT--STTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCS----CTTSCE
T ss_pred ceeEEeecCCccc--CCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCc----CCCCCE
Confidence 4689999999862 147899999864 1679999999999999999995443487752 346789
Q ss_pred EEEEcCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHHCC--CEEEEEeeCCCCCCCcccc
Q 023223 172 LIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETG 243 (285)
Q Consensus 172 vliAgGtGIaP~~sil~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g 243 (285)
+|||||||||||++++++.+.. ....+++|+||+|+.+ +++|++||++|...+ +++++++|++++.| .+
T Consensus 504 IlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~---k~ 580 (688)
T 1tll_A 504 ILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KK 580 (688)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CC
T ss_pred EEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCC---cc
Confidence 9999999999999999998753 3568899999999998 789999999998864 47888899876543 57
Q ss_pred ccchHHHHh-hh----cCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223 244 YVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEVCYCFCLEF 282 (285)
Q Consensus 244 ~v~~~~~~~-~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~ 282 (285)
|+++.+.+. .. .....+..+|+|||+.|++.+.+.|.+.
T Consensus 581 yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 581 YVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp CHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 888766543 11 1112567999999999999999998875
No 31
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.91 E-value=1e-25 Score=182.36 Aligned_cols=132 Identities=12% Similarity=0.184 Sum_probs=96.6
Q ss_pred CCCCCE-EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 023223 141 LKKGDV-VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219 (285)
Q Consensus 141 l~~Gd~-v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (285)
+++||+ +.++||+|++|.++ ..++++|||||+||||+++|++++.+.+ .+++++ ++|+.++++|+++|++
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~------~~~~~llIaGG~GItPl~sm~~~l~~~~--~~v~l~-g~r~~~d~~~~~el~~ 71 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEK 71 (158)
T ss_dssp -----------CCCCCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHHT--CEEEEE-EECBGGGCCSHHHHHH
T ss_pred CcCCCEeeEEECCCCCCCccC------CCCeEEEEEccCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHH
Confidence 578999 69999999977553 4679999999999999999999987543 489999 9999999999999999
Q ss_pred HHHCCCEEEEEeeCC----CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 220 WESSGVKIVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 220 l~~~~~~v~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
|.. ++.+.++++++ +++|.+..|++++.+.+. ..+.+...+|+|||+.|++++.+.|.++|+
T Consensus 72 l~~-~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~--l~~~~~~~vy~CGP~~mm~~v~~~l~~~Gv 137 (158)
T 3lrx_A 72 AVT-RHIVEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGV 137 (158)
T ss_dssp HSS-EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH--HHHSCCSEEEEESCHHHHHHHHHHHGGGTC
T ss_pred HHh-ceEEEEeeccccccCCCCCCCCcccccHHHHHh--hccCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 865 34333333432 345677889998865542 222245689999999999999999999997
No 32
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.91 E-value=1.1e-23 Score=196.78 Aligned_cols=169 Identities=18% Similarity=0.334 Sum_probs=133.5
Q ss_pred CeeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCC------EEEEEeecCCCcccCCCCCCC
Q 023223 103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGD------VVEISQVMGRGFAVDRIQPPD 166 (285)
Q Consensus 103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd------~v~i~gP~G~~f~~~~~~~~~ 166 (285)
..+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++.+|+ .|.+.+|.|. |.+.. +
T Consensus 232 l~pR~YSIsSsp~~--~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~----~ 304 (458)
T 3qfs_A 232 LQARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----K 304 (458)
T ss_dssp CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCS----S
T ss_pred CcceeEeeccCccc--CCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCC-cccCC----C
Confidence 56799999999863 157899998643 278999999988765 6999999996 87753 3
Q ss_pred CCCeEEEEEcCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCCc-cccccHHHHHHHHHCC--CEEEEEeeCCCCCCC
Q 023223 167 EYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS 239 (285)
Q Consensus 167 ~~~~~vliAgGtGIaP~~sil~~~~---~~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~ 239 (285)
..++++|||+|||||||++++++.. +.+ ...+++|+||+|+. ++++|++||++|.+.+ +++..++|+++
T Consensus 305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~---- 380 (458)
T 3qfs_A 305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQ---- 380 (458)
T ss_dssp TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSS----
T ss_pred CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCC----
Confidence 4679999999999999999999853 222 45789999999996 7999999999998864 48889998864
Q ss_pred ccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223 240 GETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLEF 282 (285)
Q Consensus 240 ~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~~ 282 (285)
+.++||++.+.+..... ..++..+|+|||+ .|++++++.|.+.
T Consensus 381 ~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (458)
T 3qfs_A 381 SHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDI 427 (458)
T ss_dssp SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 35789998876632111 0257899999995 8999999888763
No 33
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.91 E-value=1.4e-25 Score=219.70 Aligned_cols=183 Identities=21% Similarity=0.325 Sum_probs=144.0
Q ss_pred CCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe-------------CCcchHHhhCCCC------------
Q 023223 89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKK------------ 143 (285)
Q Consensus 89 ~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~-------------~G~~s~~L~~l~~------------ 143 (285)
..|+||+...++. ..+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++++
T Consensus 414 ~~p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 414 TVPMQFLVESVPQ-MTPRYYSISSSSLS--EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp TSCHHHHHHHSCB-CCCEEEEBCSCTTT--CTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCCHHHHHHhCcc-cccccccccCCccc--CCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence 4688888777764 67899999999963 148899988642 2789999998776
Q ss_pred CCEEEEEeecCCC-------------cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC----------CCCcEE
Q 023223 144 GDVVEISQVMGRG-------------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVR 200 (285)
Q Consensus 144 Gd~v~i~gP~G~~-------------f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~----------~~~~v~ 200 (285)
|+.|.+.||+|.+ |.+ |.+...+++|||+|||||||++++++.+... ...+++
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~L----p~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~ 566 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRL----PSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHI 566 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCC----CSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEE
T ss_pred ccceeeccCcCcccCceEEEEEecCcccC----CCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEE
Confidence 9999999999983 222 2234689999999999999999999987432 257899
Q ss_pred EEEccCCccccccHHHHHHHHH---CCCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECc-hhHH
Q 023223 201 LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMA 272 (285)
Q Consensus 201 l~~~~r~~~~~~~~~~l~~l~~---~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp-~~m~ 272 (285)
||||+|+.++++|++||++|.. .++++++++|+++. +.++||++.+.+... .. .++..+|+||| +.|+
T Consensus 567 L~fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l-~~~~~vYvCGpa~~M~ 642 (682)
T 2bpo_A 567 LFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMI-NNGAFIYVCGDAKGMA 642 (682)
T ss_dssp EEEEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHH-TTTCEEEEEECSTTHH
T ss_pred EEEecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHH-hCCcEEEEeCCchHhH
Confidence 9999999999999999999953 25789999998532 468899988765321 12 25689999999 7999
Q ss_pred HHHHHHHHhc
Q 023223 273 EVCYCFCLEF 282 (285)
Q Consensus 273 ~~~~~~L~~~ 282 (285)
+++.+.|.+.
T Consensus 643 ~~V~~~L~~i 652 (682)
T 2bpo_A 643 KGVSTALVGI 652 (682)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 34
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.89 E-value=6.2e-23 Score=198.90 Aligned_cols=167 Identities=18% Similarity=0.365 Sum_probs=131.6
Q ss_pred eeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCC-CC-----EEEEEeecCCCcccCCCCCCCC
Q 023223 104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKK-GD-----VVEISQVMGRGFAVDRIQPPDE 167 (285)
Q Consensus 104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~-Gd-----~v~i~gP~G~~f~~~~~~~~~~ 167 (285)
.+|+|||+|+|... ++.++|+|+.+ .|.+|+||+++.+ |+ .|.+.+|.|. |.+.. +.
T Consensus 393 ~pR~YSIsSsp~~~--~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~----~~ 465 (618)
T 3qe2_A 393 QARYYSIASSSKVH--PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----KA 465 (618)
T ss_dssp CCEEEECCSCTTTC--TTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCS----ST
T ss_pred ccceeccccCCcCC--CCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCC----CC
Confidence 47899999998631 47888888542 2789999999888 88 9999999996 87752 34
Q ss_pred CCeEEEEEcCcchhHHHHHHHHhhcc---C-CCCcEEEEEccCCc-cccccHHHHHHHHHC-CC-EEEEEeeCCCCCCCc
Q 023223 168 YPTVLIFATGSGISPIRSLIESGFSS---K-ERSDVRLYYGARNL-KRMAYQDKFKEWESS-GV-KIVPVLSQPDGNWSG 240 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~~~~---~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~~-~v~~~~s~~~~~~~~ 240 (285)
..+++|||+|||||||++++++.+.. + ...+++|+||+|+. ++++|+++|++|.+. .+ +++.++|+++.
T Consensus 466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~---- 541 (618)
T 3qe2_A 466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS---- 541 (618)
T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----
T ss_pred CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----
Confidence 67899999999999999999997632 1 34789999999998 599999999999875 34 89999998653
Q ss_pred cccccchHHHHhhh----cCCCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223 241 ETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEVCYCFCLEF 282 (285)
Q Consensus 241 ~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~-~m~~~~~~~L~~~ 282 (285)
.++|+++.+.+... .. ..+..+|+|||+ .|++.+.+.|.+.
T Consensus 542 ~k~yVqd~l~~~~~~l~~~l-~~~a~vYvCGp~~~M~~~V~~~L~~i 587 (618)
T 3qe2_A 542 HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI 587 (618)
T ss_dssp SCCCHHHHHHHTHHHHHHHH-HHTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhHHHHHHHH-hCCcEEEEECCchHHHHHHHHHHHHH
Confidence 47899988765321 11 346799999996 9999999888753
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.89 E-value=3e-24 Score=170.64 Aligned_cols=126 Identities=10% Similarity=0.146 Sum_probs=97.8
Q ss_pred EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCE
Q 023223 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVK 226 (285)
Q Consensus 147 v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~ 226 (285)
+.+.||+|++|..+ ..++++|||||+||||+++|++++.+. ..+++++ ++|+.++++|+++|++|.. .+.
T Consensus 3 ~~v~GP~G~~~~~~------~~~~~llIaGG~GiaPl~sm~~~l~~~--~~~v~l~-g~R~~~~~~~~~el~~l~~-~~~ 72 (142)
T 3lyu_A 3 LNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEI--GNDVTTL-HVTFEPMVILKEELEKAVT-RHI 72 (142)
T ss_dssp ----CCCSCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHT--TCEEEEE-EEEEGGGCCSHHHHHTTSS-EEE
T ss_pred eeeeCCCCCCccCC------CCCeEEEEECcCcHHHHHHHHHHHHhc--CCcEEEE-EeCCHHHhhHHHHHHHHHh-heE
Confidence 57899999977653 468999999999999999999998764 3589999 9999999999999998864 344
Q ss_pred EEEEeeCC----CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 227 IVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 227 v~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+.++++++ +++|.+..|++++.+.+. ..+.+...+|+|||+.|++.+.+.+++.||
T Consensus 73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~--~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~ 132 (142)
T 3lyu_A 73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGV 132 (142)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHHHH--HHSSCCSEEEEESCHHHHHHHHHHHHHHTC
T ss_pred EEEeecccccCCCCCCCCCccchhHHHHHh--cccCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 44444442 345777889998776553 223345689999999999999999999987
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=159.42 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=98.1
Q ss_pred EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc-------CCCCcEEEEEccCCccccc-cHHHHH
Q 023223 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-------KERSDVRLYYGARNLKRMA-YQDKFK 218 (285)
Q Consensus 147 v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~-------~~~~~v~l~~~~r~~~~~~-~~~~l~ 218 (285)
|.|.||+|.++ .+. ...++++||||||||||+++|+++++.. ....+|+|+|++|+.++++ |+++|+
T Consensus 1 v~v~GP~G~~~-~~~----~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~ 75 (186)
T 3a1f_A 1 IAVDGPFGTAS-EDV----FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQ 75 (186)
T ss_dssp CCTTSTTSHHH-HHH----TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHH
T ss_pred CeEECCCCCCc-cCh----hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHH
Confidence 35689999844 321 2578999999999999999999998864 2468899999999999997 999999
Q ss_pred HHHHC--------CCEEEEEeeCCCCC---------------CCc-----cccccchHH-HHhh-hcCCCCCcEEEEECc
Q 023223 219 EWESS--------GVKIVPVLSQPDGN---------------WSG-----ETGYVQAAF-SRAK-KIFNPQGTGVVLCGQ 268 (285)
Q Consensus 219 ~l~~~--------~~~v~~~~s~~~~~---------------~~~-----~~g~v~~~~-~~~~-~~~~~~~~~vyiCGp 268 (285)
++... +++++++++++... +.+ ..|+++... .+.. ......+..||+|||
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP 155 (186)
T 3a1f_A 76 LLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP 155 (186)
T ss_dssp HHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred HHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 98762 68898888875321 111 125655432 2211 111124678999999
Q ss_pred hhHHHHHHHHHHhcCC
Q 023223 269 KQMAEVCYCFCLEFSA 284 (285)
Q Consensus 269 ~~m~~~~~~~L~~~Gv 284 (285)
++|++++++.|.+.|+
T Consensus 156 ~~m~~~v~~~l~~~g~ 171 (186)
T 3a1f_A 156 EALAETLSKQSISNSE 171 (186)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999886
No 37
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=70.30 E-value=8.4 Score=29.83 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=47.7
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.+...+.++...|.|.++.......+. +.|-.. .+..+.|-..++||+|.+..|-|.
T Consensus 82 ~V~~Gs~V~l~~~~~~~~~~~~iVg~~ead~~~~~--~~IS~~-SPlG~ALlGk~~GD~v~~~~p~G~ 146 (156)
T 2f23_A 82 VIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTP--MKISDA-SPMGKALLGHRVGDVLSLDTPKGK 146 (156)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSS--EEEETT-SHHHHHHTTCCTTCEEEEEETTEE
T ss_pred EEEeCcEEEEEEcCCCCEEEEEEEChhHcCcCCCC--EEECCC-CHHHHHHcCCCCCCEEEEEcCCCc
Confidence 46889999998766666677888887654333442 333322 478888999999999999999885
No 38
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=64.61 E-value=6.7 Score=34.54 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=26.3
Q ss_pred CeEEEEEcCcc--hhHHHHHHHHhhccCCCCcEEEEEc
Q 023223 169 PTVLIFATGSG--ISPIRSLIESGFSSKERSDVRLYYG 204 (285)
Q Consensus 169 ~~~vliAgGtG--IaP~~sil~~~~~~~~~~~v~l~~~ 204 (285)
+++++.||||| |.|.+++.+++.++ +.+|.++-.
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~--g~~V~~vg~ 38 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR--GYAVHWLGT 38 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC--CCEEEEEEC
Confidence 57999999997 99999999998654 346665543
No 39
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=56.20 E-value=9 Score=34.53 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=29.2
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEc
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVV 100 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~ 100 (285)
.++|..+....+ .++.+++.++++. ..++||+++.+.+.
T Consensus 277 ~G~V~~I~p~~d~~t~t~~v~i~l~n~~----~~L~pGm~v~v~i~ 318 (413)
T 3ne5_B 277 TIRKWTLLPGVDAATRTLQLRLEVDNAD----EALKPGMNAWLQLN 318 (413)
T ss_dssp EECCCEECSCCBTTTTEEEEEEEEECTT----CCSCTTCEEEEEEE
T ss_pred EEEEEEEeCccCCCCcEEEEEEEEECCC----CccCCCCEEEEEEe
Confidence 566777765543 5788888887653 46899999999997
No 40
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=56.07 E-value=29 Score=26.02 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMG 154 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G 154 (285)
....|..|.+.-.+.++...|.|..+...+...+ .|-.. .+..+.|-..++||+|.+..|-|
T Consensus 53 ~V~~Gs~V~l~~~~~g~~~~~~iVg~~ead~~~~----~IS~~-SPlG~ALlGk~~GD~v~v~~p~G 114 (136)
T 3bmb_A 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT----QLSVM-APVGAALLGLRVGDSIHWELPGG 114 (136)
T ss_dssp BCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTT----EEETT-SHHHHHHTTCBTTCEEEEEETTT
T ss_pred EEEeCcEEEEEECCCCCEEEEEEEChHHcCcccc----EecCC-CHHHHHHcCCCCCCEEEEEcCCC
Confidence 4688999999876656556688886654322223 12111 46778888999999999999998
No 41
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=55.71 E-value=14 Score=28.04 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMG 154 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G 154 (285)
....|..|.+.-.+.++...|.|..+...+...+ .|-.. -+..+.|-..++||+|.+..|-|
T Consensus 56 ~V~~Gs~V~l~d~~~g~~~~~~iVg~~ead~~~~----~IS~~-SPlG~ALlGk~vGD~v~v~~P~G 117 (141)
T 2pn0_A 56 VVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGE----KISIL-APVGSALLGLAQGDEIEWPKPGG 117 (141)
T ss_dssp BCCTTCEEEEEETTTCCEEEEEEECGGGCCSSSC----EEETT-STTHHHHTTCBTTCEEEEECTTS
T ss_pred EEEeCcEEEEEECCCCCEEEEEEECHhHcCccCC----EEcCC-CHHHHHHcCCCCCCEEEEEcCCC
Confidence 4688999999876566666688888764321111 12211 47788898999999999999999
No 42
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.25 E-value=56 Score=23.58 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcE
Q 023223 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTG 262 (285)
Q Consensus 183 ~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~ 262 (285)
+.-|++.+. ..+.++.|+|+..+.+. -+++|+++++.++.+..+-+..+ ....+.+.-.+ .+...-..
T Consensus 15 lkeivreik--rqgvrvvllysdqdekr--rrerleefekqgvdvrtvedked-----frenireiwer---ypqldvvv 82 (162)
T 2l82_A 15 LKEIVREIK--RQGVRVVLLYSDQDEKR--RRERLEEFEKQGVDVRTVEDKED-----FRENIREIWER---YPQLDVVV 82 (162)
T ss_dssp HHHHHHHHH--HTTCEEEEEECCSCHHH--HHHHHHHHHTTTCEEEECCSHHH-----HHHHHHHHHHH---CTTCCEEE
T ss_pred HHHHHHHHH--hCCeEEEEEecCchHHH--HHHHHHHHHHcCCceeeeccHHH-----HHHHHHHHHHh---CCCCcEEE
Confidence 445555553 35778999999887654 47788999998888765433211 11112222222 22322333
Q ss_pred EEEECchhHHHHHHHHHHhcCC
Q 023223 263 VVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 263 vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
++....+.-++.+.+...++|+
T Consensus 83 ivttddkewikdfieeakergv 104 (162)
T 2l82_A 83 IVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp EEECCCHHHHHHHHHHHHHTTC
T ss_pred EEecCcHHHHHHHHHHHHhcCc
Confidence 4444556667776666666665
No 43
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=54.87 E-value=26 Score=32.11 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCCeeeeEEEEEeecCC----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 53 TTVWTPTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 53 ~~~~~~~~V~~~~~~~~----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
......++|++++.++. +++++.|++++. ...|+||+++.|...+.
T Consensus 59 ~~~p~~a~v~~n~~Lt~~~~r~~~hie~dl~~s----~l~Y~~GD~l~V~p~N~ 108 (458)
T 3qfs_A 59 AKNPFLAAVTTNRKLNQGTERHLMHLELDISDS----KIRYESGDHVAVYPAND 108 (458)
T ss_dssp SSSCEEEEEEEEEECCSSSSSCEEEEEEECTTS----CCCCCTTCEEEECCCCC
T ss_pred CCCCEEEEEEEEEEcCCCCCCCEEEEEEEeCCC----CcccCCCCEEEEEeeCC
Confidence 34455789999998865 799999998764 26899999999987764
No 44
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=54.23 E-value=27 Score=32.74 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.....++|++++.+++ +++++.|++++.. ..|+||+++.|...+.
T Consensus 112 ~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~----l~Y~~GD~l~V~P~N~ 161 (539)
T 2qtl_A 112 DPVFQVPISKAVQLTTNDAIKTTLLVELDISNTD----FSYQPGDAFSVICPNS 161 (539)
T ss_dssp -CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC----CCCCTTCEEEEECCCC
T ss_pred CCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCC----cCcCCCCEEEEEeCCC
Confidence 3445689999999974 7999999987642 6899999999998765
No 45
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=53.91 E-value=24 Score=31.59 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.2
Q ss_pred eeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 56 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
...++|++++.++. +++++.|++++. ..|+||+++.|...+.
T Consensus 6 ~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~-----~~Y~~GD~l~v~p~N~ 52 (393)
T 4dql_A 6 AFSTNVVASKELQQPGSARSTRHLEIELPKE-----ASYQEGDHLGVIPRNY 52 (393)
T ss_dssp CEEEEEEEEEECSCTTCSCCEEEEEEECCTT-----CCCCTTCEEEECCCCC
T ss_pred cEEEEEEeEEEcCCCCCCceEEEEEEECCCC-----CccCCCCEEEEEccCC
Confidence 34688999988864 799999998743 6899999999987754
No 46
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=52.31 E-value=12 Score=29.07 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=43.7
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.+.- +.++...|+|..+...+...+ +... .+..+.|-..++||+|.+..|-|.
T Consensus 84 ~V~~Gs~V~l~~-~~g~~~~y~iVg~~ead~~~~------~IS~~SPlg~ALlGk~vGD~v~v~~P~G~ 145 (158)
T 2p4v_A 84 KVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKD------YISIDSPMARALLKKEVGDLAVVNTPAGE 145 (158)
T ss_dssp SCSSSCEEEEEC-TTCCCEEEEBCCSTTCCSSSC------CBCTTSHHHHHSTTCCTTCEEEEECSSCE
T ss_pred EEeccEEEEEEE-CCCCEEEEEEECHHHcCccCC------eecCCCHHHHHhcCCCCCCEEEEEcCCCc
Confidence 468899999987 566667789988765322111 1111 366778888999999999999886
No 47
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=46.86 E-value=38 Score=30.69 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.....++|++++.+++ +++++.|++++..+ ..|+||+++.|...+.
T Consensus 28 ~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~---~~Y~~GD~l~V~p~N~ 78 (435)
T 1f20_A 28 KRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQE---LQYQPGDHLGVFPGNH 78 (435)
T ss_dssp SCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGG---GCCCTTCEEEECCCCC
T ss_pred CCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCC---CcCCCCCEEEEEecCC
Confidence 3445789999988874 69999999865422 5899999999997765
No 48
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=46.33 E-value=47 Score=28.75 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=31.1
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG 103 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~ 103 (285)
.++|..+....+ .++.+++.++++. ..++||+++.+.+....
T Consensus 240 ~g~v~~i~~~~d~~~~~~~v~~~~~~~~----~~l~~G~~~~v~i~~~~ 284 (359)
T 3lnn_A 240 PGKVRYVGQILDADTRTTKVRMVFDNPD----GRLRPGMFAQATFLSQP 284 (359)
T ss_dssp EEEEEECCCCCCTTSCCEEEEEEEECSS----CCCCTTCEEEEEEECCC
T ss_pred EEEEEEEecccCCCCcEEEEEEEecCCC----CCcCCCCEEEEEEecCC
Confidence 678888766543 5777888776643 45899999999998653
No 49
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=45.32 E-value=15 Score=28.45 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
....|..|.+.-.+.+....|.|..+...+...+ .|-.. .+..+.|-..++||+|.+..|-|.
T Consensus 85 ~V~~Gs~V~l~~~~~~~~~~y~iVg~~ead~~~~----~IS~~-SPlG~ALlGk~~GD~v~v~~p~G~ 147 (158)
T 1grj_A 85 RVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQN----LISVN-SPIARGLIGKEEDDVVVIKTPGGE 147 (158)
T ss_dssp BCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGT----EEESS-SHHHHHHTTCBTTCEECC------
T ss_pred EEEeCcEEEEEECCCCCEEEEEEECHHHhCCcCC----EEcCC-CHHHHHHcCCCCCCEEEEEcCCCc
Confidence 4688999999876666667789987765321112 22222 477888889999999999999886
No 50
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=39.57 E-value=29 Score=26.52 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=24.7
Q ss_pred cCCCCeeeeEEEEEeec----CCCeEEEEEECCCCCcccccCCCCCcEEEEEEc
Q 023223 51 QDTTVWTPTPLAEISPA----AESLFHVSIDISDAPDIASSHTRAGQYLQLRVV 100 (285)
Q Consensus 51 ~~~~~~~~~~V~~~~~~----~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~ 100 (285)
.-...|.+.+|++...- .+.+=.+.+..-+...-...-+++|.||++--.
T Consensus 57 ~~s~VWmQG~VV~~~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~ 110 (150)
T 3mxn_B 57 DLAAVWMQGRVVMADRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGV 110 (150)
T ss_dssp ECSEEEEEEEEEEEETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEE
T ss_pred eeEEEEEEeEEEEeCCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEEEE
Confidence 34567889999985221 011111222211110000123789999998754
No 51
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=38.05 E-value=20 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCCCEEEEEeecCCCcc
Q 023223 141 LKKGDVVEISQVMGRGFA 158 (285)
Q Consensus 141 l~~Gd~v~i~gP~G~~f~ 158 (285)
+.+||.|++.+|-|..+.
T Consensus 30 f~~GD~iEi~~P~g~~~~ 47 (89)
T 4he6_A 30 FRPGDEVEFFGPEIENFT 47 (89)
T ss_dssp BCTTCEEEEESTTSCCEE
T ss_pred cCCCCEEEEEcCCCCcEE
Confidence 789999999999995443
No 52
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=37.77 E-value=1.5e+02 Score=23.53 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=49.1
Q ss_pred eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (285)
Q Consensus 58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~ 137 (285)
-++|.++++.. +-+.++++.+.. + ...+.++.+|.+. +. .+|+.... ++.|.+.+-.+- .-..-
T Consensus 105 ~g~i~~i~~~~-~~~~~~i~~p~~--l-~~~i~~KgSIavd----Gv--SLTV~~v~-----~~~f~v~lIp~T-l~~T~ 168 (186)
T 3ddy_A 105 TALVAAIEEND-AGFSVLIDIPKG--L-AENLTVKDDIGID----GI--SLPITDMS-----DSIITLNYSRDL-LASTN 168 (186)
T ss_dssp EEEEEEEECCS-SEEEEEEECCTT--T-CSCCCTTCEEEET----TE--EEECCEEE-----TTEEEEEEEGGG-GGTSS
T ss_pred EEEEEEEEECC-CeEEEEEEcCHH--H-hhccccCcEEEEE----eE--EEEEEeec-----CCEEEEEEcHHH-Hhhcc
Confidence 47788887765 566788887643 2 2457788877654 32 35666654 456665554331 11224
Q ss_pred hhCCCCCCEEEEEe
Q 023223 138 LCGLKKGDVVEISQ 151 (285)
Q Consensus 138 L~~l~~Gd~v~i~g 151 (285)
|..+++||.|.++-
T Consensus 169 l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 169 IASLAKDVKVNVEI 182 (186)
T ss_dssp GGGCCTTCEEEEEE
T ss_pred cccCccCCEEEEEE
Confidence 67799999999874
No 53
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=37.25 E-value=63 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=34.4
Q ss_pred eeeeEEEEEeecCC----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 56 WTPTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 56 ~~~~~V~~~~~~~~----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
...++|++++.+++ +++++.|++++. ...|+||+++.|...+.
T Consensus 222 ~~~a~v~~n~~Lt~~~~~~~~hie~~~~~~----~~~Y~~GD~l~V~p~N~ 268 (618)
T 3qe2_A 222 PFLAAVTTNRKLNQGTERHLMHLELDISDS----KIRYESGDHVAVYPAND 268 (618)
T ss_dssp CEEEEEEEEEECSCCSSSCEEEEEEECTTS----CCCCCTTCEEEECCCCC
T ss_pred cEEEEEEeEEEcCCCCCCcEEEEEEEcCCC----CcccccCCEEEEEcCCC
Confidence 45788988888864 799999998763 26899999999987654
No 54
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=37.05 E-value=60 Score=26.35 Aligned_cols=103 Identities=8% Similarity=0.089 Sum_probs=59.9
Q ss_pred CcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCC-CCCc-c-ccc---cchHHH
Q 023223 177 GSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDG-NWSG-E-TGY---VQAAFS 250 (285)
Q Consensus 177 GtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~-~~~~-~-~g~---v~~~~~ 250 (285)
|.-+.-++..++..+...... =.+++|+-+....+.+.. .+...++++.-+++..+. .+.. . .|. -.+.+.
T Consensus 65 GY~V~~L~~~i~~~Lg~~~~~-~V~IvGaG~lG~aLa~~~--~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~ 141 (212)
T 3keo_A 65 GYDVKKLMNFFAEILNDHSTT-NVMLVGCGNIGRALLHYR--FHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTIN 141 (212)
T ss_dssp SEEHHHHHHHHHHHTTTTSCE-EEEEECCSHHHHHHTTCC--CCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHH
T ss_pred CEEHHHHHHHHHHHhCCCCCC-EEEEECcCHHHHHHHHhh--hcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHH
Confidence 334666777777766433333 357788877665433321 112347888877776544 3211 1 121 112222
Q ss_pred HhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 251 RAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 251 ~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+ ......-..+++|-|..-.+.+.+.|.+.||
T Consensus 142 ~--~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GI 173 (212)
T 3keo_A 142 D--HLIDSDIETAILTVPSTEAQEVADILVKAGI 173 (212)
T ss_dssp H--HC-CCSCCEEEECSCGGGHHHHHHHHHHHTC
T ss_pred H--HHHHcCCCEEEEecCchhHHHHHHHHHHcCC
Confidence 2 1222345689999999999999999999987
No 55
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=35.34 E-value=40 Score=28.95 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=28.5
Q ss_pred eeEEEEEeecCC---C--eEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE---S--LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~---~--~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+....+ + .+.+++.++++. ..++||+++.+.+...
T Consensus 226 ~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~----~~l~~G~~~~v~i~~~ 271 (341)
T 3fpp_A 226 EGQIKDVLPTPEKVNDAIFYYARFEVPNPN----GLLRLDMTAQVHIQLT 271 (341)
T ss_dssp CCCEEEECSSCCBSSSCBCCEEEEEEECSS----SCCCTTCEEEEEEESC
T ss_pred EEEEEEEecCccccCceEEEEEEEEeCCCc----cccCCCCEEEEEEEEc
Confidence 678888866543 2 356677666543 3589999999999743
No 56
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=35.33 E-value=69 Score=30.91 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=35.9
Q ss_pred CeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 55 VWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 55 ~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
....++|++++.+++ +++++.|++++..+ ..|+||+++.|...+.
T Consensus 250 ~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~---~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 250 RVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQE---LQYQPGDHLGVFPGNH 299 (688)
T ss_dssp CCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGG---GCCCTTCEEEECCCCC
T ss_pred CceEEEEEeeeecCCCCCCceEEEEEEecCCCCC---CccCCCCEEEEecCCC
Confidence 455789999998874 69999999865422 5899999999987764
No 57
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=28.01 E-value=1.5e+02 Score=24.95 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=20.0
Q ss_pred CcEEEEECchhHHHHHHHHHHhcCC
Q 023223 260 GTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 260 ~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
...+|+|+...+...+.+.+.+.|+
T Consensus 194 ~d~v~~~~~~~~a~~~~~~~~~~g~ 218 (356)
T 3ipc_A 194 VSIIYWGGLHTEAGLIIRQAADQGL 218 (356)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEccCchHHHHHHHHHHHCCC
Confidence 4568889998888888888888775
No 58
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=27.46 E-value=2.6e+02 Score=23.77 Aligned_cols=94 Identities=18% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcE
Q 023223 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTG 262 (285)
Q Consensus 183 ~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~ 262 (285)
...+++.+.+.-..++|-++|.......-......+.+.+.++++.....-+.. .......+.+. .......
T Consensus 130 ~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~d~~~~~~~l---~~~~~da 201 (392)
T 3lkb_A 130 VVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-----NLDNTALLKRF---EQAGVEY 201 (392)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-----CCCCHHHHHHH---HHTTCCE
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-----CcCHHHHHHHH---HhcCCCE
Confidence 344555554432347788888532211111122223344447776543322211 01122222221 1123346
Q ss_pred EEEECchhHHHHHHHHHHhcCC
Q 023223 263 VVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 263 vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
+|+|+...+...+.+.+.+.|+
T Consensus 202 v~~~~~~~~a~~~~~~~~~~g~ 223 (392)
T 3lkb_A 202 VVHQNVAGPVANILKDAKRLGL 223 (392)
T ss_dssp EEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEecCcchHHHHHHHHHHcCC
Confidence 7778998888888888888875
No 59
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=26.36 E-value=52 Score=21.42 Aligned_cols=30 Identities=7% Similarity=0.150 Sum_probs=23.2
Q ss_pred hhccCCCCeeeeEEEEEeecCCCeEEEEEEC
Q 023223 48 AVRQDTTVWTPTPLAEISPAAESLFHVSIDI 78 (285)
Q Consensus 48 ~~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~ 78 (285)
|-|.-...|-+++|.++. ..+.++.+.++-
T Consensus 21 aRW~Gd~~yYparItSit-s~~~~Y~VkfKd 50 (68)
T 2dig_A 21 GRWPGSSLYYEVEILSHD-STSQLYTVKYKD 50 (68)
T ss_dssp EECTTTCCEEEEEEEEEE-TTTTEEEEECTT
T ss_pred EEccCCccceEEEEEEec-cCCceEEEEecC
Confidence 556667789999999999 566777777654
No 60
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.37 E-value=2.3e+02 Score=23.01 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=51.3
Q ss_pred HHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHH----HCCCEE--EEEeeCCCCCCCccccccchHHHHhhhc
Q 023223 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE----SSGVKI--VPVLSQPDGNWSGETGYVQAAFSRAKKI 255 (285)
Q Consensus 182 P~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~----~~~~~v--~~~~s~~~~~~~~~~g~v~~~~~~~~~~ 255 (285)
......+++.+.+ .++|-++.+..+.. ..+++++.+. ..++.+ ..+.......|....+++.+.+.+. +
T Consensus 118 ~g~~a~~~L~~~G-~~~I~~i~~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l 192 (301)
T 3miz_A 118 GARDLTRYLLERG-HRRIGYIRLNPILL--GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEM--L 192 (301)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEECCTTSH--HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHH--H
T ss_pred HHHHHHHHHHHcC-CCeEEEEecCccch--hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHH--H
Confidence 4456667666543 45677777654432 3334443333 224322 1122210002333344432333331 1
Q ss_pred CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223 256 FNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 256 ~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
.......+++|....|...+.++|.++|+
T Consensus 193 ~~~~~~~ai~~~~d~~A~g~~~al~~~g~ 221 (301)
T 3miz_A 193 KQDDRPTAIMSGNDEMAIQIYIAAMALGL 221 (301)
T ss_dssp TSTTCCSEEEESSHHHHHHHHHHHHTTTC
T ss_pred cCCCCCcEEEECCHHHHHHHHHHHHHcCC
Confidence 22234568899999999999999999986
No 61
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=24.41 E-value=52 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCeEEEEEcCcchhHHHHHHHHh
Q 023223 168 YPTVLIFATGSGISPIRSLIESG 190 (285)
Q Consensus 168 ~~~~vliAgGtGIaP~~sil~~~ 190 (285)
..+++.|+||+|.+-++.=++..
T Consensus 4 ~~~IV~igGGtGl~~ll~gLk~~ 26 (326)
T 2q7x_A 4 XPXITVIGGGTGSPVILXSLREX 26 (326)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHS
T ss_pred CCeEEEEcCcccHHHHHHHhccC
Confidence 45899999999999999998875
No 62
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=23.42 E-value=3.5e+02 Score=23.18 Aligned_cols=82 Identities=4% Similarity=-0.088 Sum_probs=44.3
Q ss_pred CCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHH
Q 023223 195 ERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEV 274 (285)
Q Consensus 195 ~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~ 274 (285)
.-.+|-++| ..+...-..++..+.+...++++.....-+.. + ...+...+.+ +...+...++++|.......
T Consensus 129 gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~-~~d~~~~l~~---ik~~~~~vii~~~~~~~~~~ 200 (389)
T 3o21_A 129 KWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIK---D-VQEFRRIIEE---MDRRQEKRYLIDCEVERINT 200 (389)
T ss_dssp TCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCC---C-THHHHHHHHH---HHTTTCCEEEEESCHHHHHH
T ss_pred CCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCC---C-cHHHHHHHHH---HHhCCCeEEEEECCHHHHHH
Confidence 346788888 44333333344445566668877543322110 0 0012222222 22334456888888888777
Q ss_pred HHHHHHhcCC
Q 023223 275 CYCFCLEFSA 284 (285)
Q Consensus 275 ~~~~L~~~Gv 284 (285)
+.+.+.+.|+
T Consensus 201 i~~qa~~~g~ 210 (389)
T 3o21_A 201 ILEQVVILGK 210 (389)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHcCc
Confidence 7777777774
No 63
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=23.05 E-value=40 Score=26.96 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCeEEEEEEEeCC-cchHHhhCCCC------CCEEEEEeecC--CCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHh
Q 023223 120 SGAFEFLVKSVAG-STAEVLCGLKK------GDVVEISQVMG--RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190 (285)
Q Consensus 120 ~~~l~l~Vk~~~G-~~s~~L~~l~~------Gd~v~i~gP~G--~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~ 190 (285)
++.+-|.|-+-.+ ...+.|.++.. ...|.+.||.. .+|.+... .......+-|..|+.++.-..+++.+
T Consensus 35 ~Ga~GlIlNrP~~~~l~~ll~~l~~~~~~~~~~~v~~GGPV~~~rgfvLH~~--~~~~~~s~~v~~gv~lt~s~d~l~~i 112 (192)
T 2ew0_A 35 EGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVLHTG--QPTWHSSIAVGENVCITTSKDILDAI 112 (192)
T ss_dssp TEEEEEECSCEEEEEHHHHHHHTTCCCTTCCCCEEEECCSEEEEEEEEEEES--CCCSSSEEEEETTEEEECSSHHHHHH
T ss_pred CceeEEEecCCCCCCHHHHHHhhCcccccCCCCeeEECCCcCCCcEEEEEeC--CCCCCCceEecCCeeeeCCHHHHHHH
Confidence 5666666533212 33444443332 56788899876 44655431 11235578888999999999999988
Q ss_pred hccCCCCcEEEEEccCCccccccHHHHH
Q 023223 191 FSSKERSDVRLYYGARNLKRMAYQDKFK 218 (285)
Q Consensus 191 ~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (285)
.......+++++.|.-....--+.+|+.
T Consensus 113 ~~~~~p~~~~~flGYaGW~~GQLe~Ei~ 140 (192)
T 2ew0_A 113 AHNEGVGRYQIALGYASWGKNQLEDEIA 140 (192)
T ss_dssp HTTCSCCSEEEEEEEEEECTTHHHHHHH
T ss_pred hcCCCCccEEEEEeecCCCHHHHHHHHH
Confidence 6544457788887766655545555543
No 64
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=22.99 E-value=48 Score=29.12 Aligned_cols=24 Identities=13% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCCeEEEEEcCcchhHHHHHHHHh
Q 023223 167 EYPTVLIFATGSGISPIRSLIESG 190 (285)
Q Consensus 167 ~~~~~vliAgGtGIaP~~sil~~~ 190 (285)
...+++.|+||+|.+-++.=++..
T Consensus 9 ~~~kIVvigGGtGl~~ll~gLk~~ 32 (341)
T 2p0y_A 9 QRPKIVVIGGGTGLPVVLNGLRKQ 32 (341)
T ss_dssp -CCEEEEECCGGGHHHHHHHHHHS
T ss_pred CCCeEEEECCcccHHHHHHHHHhC
Confidence 346899999999999999888864
No 65
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ, structural genomic biology, protein structure initiative; NMR {Geobacter sulfurreducens}
Probab=21.93 E-value=87 Score=22.58 Aligned_cols=62 Identities=16% Similarity=-0.000 Sum_probs=35.7
Q ss_pred cCCCCCcEEEEEEcC--CCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC
Q 023223 87 SHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (285)
Q Consensus 87 ~~~~pGQ~v~l~~~~--~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~ 155 (285)
..|.+||-|.+.+|- .+.-+...|.+.-+ ++.+.+-.-+. .-..+ -.++.|..+.++...|.
T Consensus 11 ~yF~~gqrv~V~ipL~~~~~F~dwAiIt~~~----~dli~lqLsrd-~LP~~--v~l~~G~~l~v~~~~g~ 74 (109)
T 2l1t_A 11 RYFEQLQKVNLTVRLGDTGSFDGTAAITSLK----GSLAWLELFGA-EQPPP--NTLSEGAEVSVSVWTGG 74 (109)
T ss_dssp GTCCTTCEEEEEEEETTTEEEEEEEEEEEEE----TTEEEECCSSS-CCCCT--TTCCTTCEEEEEEEETT
T ss_pred HhcCCCcEEEEEEEcCCCCeEcCceEEEEec----CCEEEEEeecc-cCCCc--eeEecccEEEEEEccCC
Confidence 479999999999983 22333345555443 45554443332 11111 12688888888765553
No 66
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=21.76 E-value=61 Score=28.35 Aligned_cols=41 Identities=5% Similarity=0.085 Sum_probs=27.9
Q ss_pred eeEEEEEeecCC---CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~---~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|..+....+ .++.+++.++++. ..++||+++.+++...
T Consensus 222 ~g~V~~i~~~~d~~t~~~~v~i~l~~~~----~~L~~G~~v~v~i~~~ 265 (369)
T 1vf7_A 222 EGRLEFSEVSVDEGTGSVTIRAVFPNPN----NELLPGMFVHAQLQEG 265 (369)
T ss_dssp CCEEESSCSCCCSSSSEEEECBEEECSS----SCCCTTCEEEEEEECC
T ss_pred EEEEEEEecccCCCCCEEEEEEEEeCCC----CccCCCCEEEEEEecC
Confidence 566766654432 4666777666542 3689999999999854
No 67
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=21.62 E-value=3.6e+02 Score=22.54 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=47.3
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHH-HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCc
Q 023223 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF-KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT 261 (285)
Q Consensus 183 ~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l-~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~ 261 (285)
...+++.+.+.-..++|-++|...+.......+.+ +.+...++++....-.... ......+.+. ......
T Consensus 136 ~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~------~d~~~~~~~l---~~~~~d 206 (366)
T 3td9_A 136 GAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGD------QDFSAQLSVA---MSFNPD 206 (366)
T ss_dssp HHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC------CCCHHHHHHH---HHTCCS
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCC------ccHHHHHHHH---HhcCCC
Confidence 34555555443245688888864332222122233 3445567776543311110 1122222221 112334
Q ss_pred EEEEECchhHHHHHHHHHHhcCC
Q 023223 262 GVVLCGQKQMAEVCYCFCLEFSA 284 (285)
Q Consensus 262 ~vyiCGp~~m~~~~~~~L~~~Gv 284 (285)
.+|+++...+...+.+.+.+.|+
T Consensus 207 ~v~~~~~~~~a~~~~~~~~~~g~ 229 (366)
T 3td9_A 207 AIYITGYYPEIALISRQARQLGF 229 (366)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTC
T ss_pred EEEEccchhHHHHHHHHHHHcCC
Confidence 66666888888888888888875
No 68
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=21.40 E-value=2.1e+02 Score=19.83 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred CCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhCCCCCCEE-EEEe
Q 023223 91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVV-EISQ 151 (285)
Q Consensus 91 pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~l~~Gd~v-~i~g 151 (285)
.||.-.+.+.-..++--+||.... .+. .|.-+..+|........+.+||++ +|-|
T Consensus 3 ~g~~k~V~l~K~~~~LG~tI~~~g-----~g~-~~I~rI~~gg~a~r~g~L~vGD~I~~VNG 58 (95)
T 3gge_A 3 KGIEKEVNVYKSEDSLGLTITDNG-----VGY-AFIKRIKDGGVIDSVKTICVGDHIESING 58 (95)
T ss_dssp CEEEEEEEEECCSSCCCEEEECSS-----SSC-CEEEEECTTSHHHHCTTCCTTCEEEEETT
T ss_pred CCeEEEEEEEECCCCceEEEEcCC-----CCc-EEEEEEcCCChHHhcCCCCCCCEEEEECC
Confidence 467666776644455557887543 222 233344457777777789999987 4533
No 69
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=21.38 E-value=1.2e+02 Score=29.03 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=32.5
Q ss_pred eeEEEEEeecCC----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC
Q 023223 58 PTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (285)
Q Consensus 58 ~~~V~~~~~~~~----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~ 102 (285)
.++|++++.++. +++++.|++++. ...|+||+++.|...+.
T Consensus 261 ~a~v~~~~~L~~~~~~~~~hie~d~~~~----~~~Y~~GD~l~V~P~N~ 305 (682)
T 2bpo_A 261 IAPIVKSRELFSSNDRNCIHSEFDLSGS----NIKYSTGDHLAVWPSNP 305 (682)
T ss_dssp CEEEEEEEECCCCSSCCEEEEEEECTTB----TCCCCTTCEEEECCCCC
T ss_pred EEEEEEEEEccCCCCCCEEEEEEEcCCC----CceecCCCEEEEEcCCC
Confidence 578888888853 789999998653 26899999999987754
Done!