Query 023225
Match_columns 285
No_of_seqs 105 out of 125
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 91.2 0.039 1.3E-06 51.7 0.0 8 31-38 246-253 (358)
2 3hht_A NitrIle hydratase alpha 59.5 7.2 0.00025 35.2 3.7 46 117-162 36-89 (216)
3 3qyh_A CO-type nitrIle hydrata 57.8 6.7 0.00023 35.6 3.2 42 117-160 47-98 (226)
4 2l6f_A Focal adhesion kinase 1 59.5 2.6 9E-05 37.9 0.0 8 94-101 204-211 (215)
5 2zzd_C Thiocyanate hydrolase s 38.4 15 0.00051 33.6 2.3 41 117-159 38-87 (243)
6 3a8g_A NitrIle hydratase subun 35.2 9.2 0.00031 34.3 0.4 44 117-162 30-83 (207)
7 4fm4_A NitrIle hydratase alpha 34.2 19 0.00066 32.3 2.3 39 118-158 21-69 (209)
8 1ugp_A NitrIle hydratase alpha 34.0 20 0.00067 32.1 2.3 44 117-162 27-80 (203)
9 2da3_A Alpha-fetoprotein enhan 28.4 1E+02 0.0036 21.8 5.1 40 94-133 26-66 (80)
10 1g3p_A G3P, minor coat protein 24.4 16 0.00056 32.3 0.1 8 73-80 74-81 (217)
11 2p0t_A UPF0307 protein pspto_4 23.5 1E+02 0.0035 26.7 4.9 36 97-132 25-72 (176)
12 2l6f_A Focal adhesion kinase 1 25.9 21 0.00073 32.1 0.0 12 88-99 201-212 (215)
13 3p8c_D Wiskott-aldrich syndrom 20.1 22 0.00075 32.9 0.0 12 30-41 127-138 (279)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=91.17 E-value=0.039 Score=51.65 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=3.2
Q ss_pred ccCCCCCc
Q 023225 31 TRQIPNPH 38 (285)
Q Consensus 31 ~~~~~~~~ 38 (285)
.+.+..++
T Consensus 246 ~~~~~~L~ 253 (358)
T 2pk2_A 246 EKTPNRLK 253 (358)
T ss_dssp TTCTTHHH
T ss_pred HhCccccc
Confidence 34444333
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=59.54 E-value=7.2 Score=35.16 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=32.9
Q ss_pred HHHcCCCCHHHHHHHHhh-c--cCchhH--Hhhh---ccchhhhhhcchhhHHH
Q 023225 117 AIEAGRVPAAIVKRYLEL-E--KSPVFR--WLLN---FGGFRERLLADDLFLAK 162 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~L-~--~~p~~~--~L~~---f~gfR~RlLADP~FlfK 162 (285)
-+|.|.|+++.+.++.+. + ..|..+ .+.+ -+.||.|||+||.=..|
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi~ 89 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLR 89 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHH
Confidence 368999999999999986 2 246321 2221 49999999999975443
No 3
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=57.82 E-value=6.7 Score=35.57 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=31.9
Q ss_pred HHHcCCCCHHHHHHHHh-hcc--Cchh-------HHhhhccchhhhhhcchhhH
Q 023225 117 AIEAGRVPAAIVKRYLE-LEK--SPVF-------RWLLNFGGFRERLLADDLFL 160 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~-L~~--~p~~-------~~L~~f~gfR~RlLADP~Fl 160 (285)
-+|.|.|+++.+.++++ ++. .|.. +|. -+.||.|||+||.=.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~--Dp~FK~rLL~D~~aA 98 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWV--DPAYKARLLADGTAG 98 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhC--CHHHHHHHHHCHHHH
Confidence 36899999999999998 433 4632 244 399999999999643
No 4
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=59.48 E-value=2.6 Score=37.95 Aligned_cols=8 Identities=25% Similarity=-0.060 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 023225 94 TEAIFALA 101 (285)
Q Consensus 94 ~ei~~Vl~ 101 (285)
.|.++.|+
T Consensus 204 ~~~~~~~~ 211 (215)
T 2l6f_A 204 RELDELMA 211 (215)
Confidence 34455443
No 5
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=38.41 E-value=15 Score=33.64 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=30.7
Q ss_pred HHHcCCCCHHHHHHHHhh-cc-Cchh-------HHhhhccchhhhhhcchhh
Q 023225 117 AIEAGRVPAAIVKRYLEL-EK-SPVF-------RWLLNFGGFRERLLADDLF 159 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~L-~~-~p~~-------~~L~~f~gfR~RlLADP~F 159 (285)
.+|.|.|+++.+.++.+. +. .|.. +|+ -|.||+|||+|+.=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~--DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWL--DPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHH--CHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecC--CHHHHHHHHHChHH
Confidence 468999999999999885 22 3532 244 38999999999863
No 6
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=35.23 E-value=9.2 Score=34.28 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHcCCCCHHHHHHHHhhcc---Cchh-------HHhhhccchhhhhhcchhhHHH
Q 023225 117 AIEAGRVPAAIVKRYLELEK---SPVF-------RWLLNFGGFRERLLADDLFLAK 162 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~L~~---~p~~-------~~L~~f~gfR~RlLADP~FlfK 162 (285)
-++.|.|+++.+.++.+.-. .|.. +|. -+.||.|||+|+.=..|
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~--DP~Fk~rLL~D~~aAi~ 83 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT--DPEFRQLLLTDGTAAVA 83 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhC--CHHHHHHHHHCHHHHHH
Confidence 46889999999999888533 3422 244 38999999999975443
No 7
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=34.23 E-value=19 Score=32.26 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHcCCCCHHHHHHHHhh-cc--Cchh-------HHhhhccchhhhhhcchh
Q 023225 118 IEAGRVPAAIVKRYLEL-EK--SPVF-------RWLLNFGGFRERLLADDL 158 (285)
Q Consensus 118 ~e~G~Vs~~~L~rfl~L-~~--~p~~-------~~L~~f~gfR~RlLADP~ 158 (285)
+|.|.|.++.+.+|.+. +. .|.. +|. -+.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~--Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWT--DPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhC--CHHHHHHHHHHHH
Confidence 47899999999999983 32 3532 244 3899999999994
No 8
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=33.96 E-value=20 Score=32.08 Aligned_cols=44 Identities=32% Similarity=0.529 Sum_probs=32.5
Q ss_pred HHHcCCCCHHHHHHHHhhcc---Cchh-------HHhhhccchhhhhhcchhhHHH
Q 023225 117 AIEAGRVPAAIVKRYLELEK---SPVF-------RWLLNFGGFRERLLADDLFLAK 162 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~L~~---~p~~-------~~L~~f~gfR~RlLADP~FlfK 162 (285)
-++.|.|+++.+.++.+.-. .|.. +|. -|.||.|||+|+.=..|
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~--Dp~fk~~Ll~d~~aA~~ 80 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWT--DPEFKKRLLADGTEACK 80 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhC--CHHHHHHHHhChHHHHH
Confidence 46899999999999988533 3422 244 49999999999975443
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.41 E-value=1e+02 Score=21.79 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=23.2
Q ss_pred HHHHHHHHHhccccCCchH-HHHHHHHcCCCCHHHHHHHHh
Q 023225 94 TEAIFALAKAGRTLGDLPK-DLAGAIEAGRVPAAIVKRYLE 133 (285)
Q Consensus 94 ~ei~~Vl~e~~r~~~sLPa-Dl~~A~e~G~Vs~~~L~rfl~ 133 (285)
.+-..+|.+++..---... +..+-++.-.++..+++.||.
T Consensus 26 ~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 66 (80)
T 2da3_A 26 PEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQ 66 (80)
T ss_dssp TTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhH
Confidence 3445667777765444333 334444555678888877763
No 10
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=24.41 E-value=16 Score=32.30 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 023225 73 GSWGSGGG 80 (285)
Q Consensus 73 ~~~~~~g~ 80 (285)
|++++|||
T Consensus 74 GdnSsGGg 81 (217)
T 1g3p_A 74 GGGSEGGG 81 (217)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 44443333
No 11
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=23.47 E-value=1e+02 Score=26.65 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHhccccCCch----------HHHHHHHHc-CCCCH-HHHHHHH
Q 023225 97 IFALAKAGRTLGDLP----------KDLAGAIEA-GRVPA-AIVKRYL 132 (285)
Q Consensus 97 ~~Vl~e~~r~~~sLP----------aDl~~A~e~-G~Vs~-~~L~rfl 132 (285)
...|+++|..+.+|| .+|.+|+.. -+|++ +-..|=+
T Consensus 25 ~~~lq~LG~eL~~Ls~~ql~klpL~e~L~~Ai~~a~ri~~~earRRQl 72 (176)
T 2p0t_A 25 LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHI 72 (176)
T ss_dssp CHHHHHHHHHHTTSCHHHHTTSCCCHHHHHHHHHGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhccccHHHHHHH
Confidence 367888888887665 467777644 33653 2444433
No 12
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=25.92 E-value=21 Score=32.11 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=5.3
Q ss_pred CCCCCHHHHHHH
Q 023225 88 AGFHNCTEAIFA 99 (285)
Q Consensus 88 ~~~~nr~ei~~V 99 (285)
...+.-.|..+-
T Consensus 201 ~~~~~~~~~~~~ 212 (215)
T 2l6f_A 201 SATRELDELMAS 212 (215)
Confidence 344444444443
No 13
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.09 E-value=22 Score=32.95 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=5.2
Q ss_pred cccCCCCCcccc
Q 023225 30 ITRQIPNPHLIN 41 (285)
Q Consensus 30 ~~~~~~~~~~~~ 41 (285)
..|.|+.++.+.
T Consensus 127 ~C~~PP~L~lLd 138 (279)
T 3p8c_D 127 VCEQPPPLNILT 138 (279)
T ss_dssp HSBCCCCGGGGG
T ss_pred hcCCCCCCcccc
Confidence 344444444443
Done!