Query 023225
Match_columns 285
No_of_seqs 105 out of 125
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 03:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 72.1 1 7.5E-05 38.2 2.9 42 117-158 26-75 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 70.6 1.1 8.1E-05 38.0 2.7 48 117-169 27-84 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 55.7 1.8 0.00013 36.5 1.3 39 118-158 22-70 (197)
4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 34.6 15 0.0011 26.9 3.4 26 94-119 55-80 (89)
5 d1x3zb1 a.189.1.1 (B:253-309) 34.4 9.7 0.00071 25.9 2.1 24 144-167 33-56 (57)
6 d1wi3a_ a.4.1.1 (A:) DNA-bindi 27.9 60 0.0044 21.6 5.5 40 94-133 16-57 (71)
7 d1vz0a1 a.4.14.1 (A:116-208) P 16.5 48 0.0035 23.6 3.1 30 106-135 41-70 (93)
8 d1qusa_ d.2.1.6 (A:) 36 kDa so 15.9 43 0.0031 29.1 3.1 58 113-191 101-158 (322)
9 d3cx5i1 f.23.14.1 (I:4-58) Sub 14.2 57 0.0041 21.8 2.7 24 163-186 23-46 (55)
10 d1wdcc_ a.39.1.5 (C:) Myosin R 13.3 1.9E+02 0.014 20.3 5.8 51 89-139 59-115 (152)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=72.06 E-value=1 Score=38.16 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHcCCCCHHHHHHHHh-hccC--chhH--Hhhh---ccchhhhhhcchh
Q 023225 117 AIEAGRVPAAIVKRYLE-LEKS--PVFR--WLLN---FGGFRERLLADDL 158 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~-L~~~--p~~~--~L~~---f~gfR~RlLADP~ 158 (285)
-+|.|+|+++.+.+.++ ++.. |..+ .+.+ -+.||+|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 46899999999999998 4443 6321 2222 3899999999986
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=70.60 E-value=1.1 Score=37.96 Aligned_cols=48 Identities=33% Similarity=0.624 Sum_probs=35.0
Q ss_pred HHHcCCCCHHHHHHHHhh-cc--Cchh-------HHhhhccchhhhhhcchhhHHHHHHHhhh
Q 023225 117 AIEAGRVPAAIVKRYLEL-EK--SPVF-------RWLLNFGGFRERLLADDLFLAKVAMECGV 169 (285)
Q Consensus 117 A~e~G~Vs~~~L~rfl~L-~~--~p~~-------~~L~~f~gfR~RlLADP~FlfKl~~E~~I 169 (285)
-+|.|+|+++.+.++++. +. .|.. +|.- +.||.|||+|+. +.+-|.++
T Consensus 27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D--p~FK~rLL~D~~---aA~~e~G~ 84 (203)
T d1ugpa_ 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD--PEFKKRLLADGT---EACKELGI 84 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC--HHHHHHHHHCHH---HHHHTTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC--HHHHHHHHHHHH---HHHHHcCC
Confidence 468999999999999994 43 4632 2443 899999999986 44445444
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=55.75 E-value=1.8 Score=36.45 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=30.2
Q ss_pred HHcCCCCHHHHHHHHhh-ccC--chh-------HHhhhccchhhhhhcchh
Q 023225 118 IEAGRVPAAIVKRYLEL-EKS--PVF-------RWLLNFGGFRERLLADDL 158 (285)
Q Consensus 118 ~e~G~Vs~~~L~rfl~L-~~~--p~~-------~~L~~f~gfR~RlLADP~ 158 (285)
+|.|.|+++.+.++++. +.. |.. +|. -+.||.|||+||.
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~--Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT--DPEFRQLLLTDGT 70 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhC--CHHHHHHHHHHHH
Confidence 47899999999999984 444 632 244 3899999999986
No 4
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.62 E-value=15 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccccCCchHHHHHHHH
Q 023225 94 TEAIFALAKAGRTLGDLPKDLAGAIE 119 (285)
Q Consensus 94 ~ei~~Vl~e~~r~~~sLPaDl~~A~e 119 (285)
|++..|+.||+.+.-=.|..+++|+.
T Consensus 55 E~A~~V~~~~~e~~PL~P~HireA~r 80 (89)
T d1bh9b_ 55 EEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 56779999999999999999999975
No 5
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.39 E-value=9.7 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred hhccchhhhhhcchhhHHHHHHHh
Q 023225 144 LNFGGFRERLLADDLFLAKVAMEC 167 (285)
Q Consensus 144 ~~f~gfR~RlLADP~FlfKl~~E~ 167 (285)
.++|-+|+.+++||.-...++.|-
T Consensus 33 ~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 33 ARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp TTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HhhHHHHHHHHhCHHHHHHHHHhh
Confidence 468999999999999888887774
No 6
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.86 E-value=60 Score=21.62 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccccCCch--HHHHHHHHcCCCCHHHHHHHHh
Q 023225 94 TEAIFALAKAGRTLGDLP--KDLAGAIEAGRVPAAIVKRYLE 133 (285)
Q Consensus 94 ~ei~~Vl~e~~r~~~sLP--aDl~~A~e~G~Vs~~~L~rfl~ 133 (285)
+|-.++|++++....--| .+..+-++.-+++..+++.||.
T Consensus 16 ~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFq 57 (71)
T d1wi3a_ 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57 (71)
T ss_dssp SHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhH
Confidence 566889999997554444 4444566677799999888774
No 7
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=16.54 E-value=48 Score=23.57 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=22.7
Q ss_pred ccCCchHHHHHHHHcCCCCHHHHHHHHhhc
Q 023225 106 TLGDLPKDLAGAIEAGRVPAAIVKRYLELE 135 (285)
Q Consensus 106 ~~~sLPaDl~~A~e~G~Vs~~~L~rfl~L~ 135 (285)
++.+||.++++++..|.|+-..-...+.+.
T Consensus 41 rLl~L~~~v~~~l~~g~Is~ghAr~L~~l~ 70 (93)
T d1vz0a1 41 RLLQLPPEALEALERGEITAGHARALLMLE 70 (93)
T ss_dssp HGGGSCHHHHHHHHTTSSCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCCC
Confidence 356788888888888888887766666554
No 8
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=15.93 E-value=43 Score=29.13 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhccCchhHHhhhccchhhhhhcchhhHHHHHHHhhhhhhhhHHHHHhhcccchhhHHH
Q 023225 113 DLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELD 191 (285)
Q Consensus 113 Dl~~A~e~G~Vs~~~L~rfl~L~~~p~~~~L~~f~gfR~RlLADP~FlfKl~~E~~I~v~~~~~aE~~~Rge~F~~ElD 191 (285)
-|.++-+.-+|++++++..+-+|.+ +-+-.-.+ -++++-+++..|+.+|.+-|.+||.
T Consensus 101 ~l~~~e~~yGV~~~ii~aiwgvET~-yG~~~G~~--------------------~v~~aLaTLAf~~~rR~~ff~~EL~ 158 (322)
T d1qusa_ 101 ALNRAWQVYGVPPEIIVGIIGVETR-WGRVMGKT--------------------RILDALATLSFNYPRRAEYFSGELE 158 (322)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHT-TTTCCCCE--------------------EHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhhhhc-hhhhcCCC--------------------cchhhhhhhhhcccchhhhhhHHHH
Confidence 4566777788999999999888877 22111111 2567777888888888777788876
No 9
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.18 E-value=57 Score=21.81 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHHHhhhhhhhhHHHHHhhcccch
Q 023225 163 VAMECGVGVFTKTAAELERRRENF 186 (285)
Q Consensus 163 l~~E~~I~v~~~~~aE~~~Rge~F 186 (285)
.+.|.++|.+..-+||--.+|+.+
T Consensus 23 f~fe~~fD~~~d~~we~~NkGKlW 46 (55)
T d3cx5i1 23 FVFQTVFDTAITSWYENHNKGKLW 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSH
T ss_pred HHHHHHHHHHHHHHHHhccCcccH
Confidence 468999999999999999987544
No 10
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=13.28 E-value=1.9e+02 Score=20.30 Aligned_cols=51 Identities=14% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHhccccCCchHHHHHHHHc------CCCCHHHHHHHHhhccCch
Q 023225 89 GFHNCTEAIFALAKAGRTLGDLPKDLAGAIEA------GRVPAAIVKRYLELEKSPV 139 (285)
Q Consensus 89 ~~~nr~ei~~Vl~e~~r~~~sLPaDl~~A~e~------G~Vs~~~L~rfl~L~~~p~ 139 (285)
+.-+-+|...+++..-+....-..++++|.+. |.|+...|.+.+.--+.++
T Consensus 59 ~~i~~~eFl~~~~~~~~~~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~g~~l 115 (152)
T d1wdcc_ 59 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERL 115 (152)
T ss_dssp CEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCC
T ss_pred ccccccccccccccccccchhHHHhhhhhhhccccccCccchHHHHHHHHHHcCCCC
Confidence 44567788888887776666777889888764 7799999988887666653
Done!