Query 023227
Match_columns 285
No_of_seqs 177 out of 1191
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 2.9E-65 6.3E-70 453.9 34.2 284 1-284 38-321 (322)
2 COG0031 CysK Cysteine synthase 100.0 1.7E-63 3.6E-68 427.8 32.2 264 1-267 34-299 (300)
3 PLN02556 cysteine synthase/L-3 100.0 3.4E-62 7.4E-67 440.2 33.2 284 1-284 82-365 (368)
4 PLN00011 cysteine synthase 100.0 1.6E-61 3.5E-66 431.2 35.1 283 1-283 40-322 (323)
5 PLN03013 cysteine synthase 100.0 5.3E-61 1.2E-65 434.5 31.3 272 1-272 146-419 (429)
6 TIGR01136 cysKM cysteine synth 100.0 1.5E-59 3.3E-64 415.1 33.2 270 1-271 30-299 (299)
7 TIGR01139 cysK cysteine syntha 100.0 1.5E-59 3.3E-64 415.1 33.1 269 1-271 29-298 (298)
8 PRK11761 cysM cysteine synthas 100.0 1.4E-58 3E-63 407.4 31.3 261 1-272 35-295 (296)
9 PRK10717 cysteine synthase A; 100.0 2.2E-58 4.8E-63 412.9 33.0 276 1-278 36-324 (330)
10 PLN02356 phosphateglycerate ki 100.0 6.1E-58 1.3E-62 414.4 31.7 276 1-278 76-409 (423)
11 KOG1252 Cystathionine beta-syn 100.0 2.3E-59 4.9E-64 400.0 20.8 281 1-281 75-360 (362)
12 TIGR01138 cysM cysteine syntha 100.0 1.2E-57 2.5E-62 400.6 31.9 260 1-271 31-290 (290)
13 cd01561 CBS_like CBS_like: Thi 100.0 7.1E-57 1.5E-61 396.9 32.7 265 1-267 25-291 (291)
14 TIGR01137 cysta_beta cystathio 100.0 9.9E-57 2.2E-61 419.2 32.4 276 1-278 34-318 (454)
15 COG1171 IlvA Threonine dehydra 100.0 5.8E-57 1.3E-61 394.0 24.3 266 1-277 48-326 (347)
16 PRK12483 threonine dehydratase 100.0 4.7E-55 1E-59 407.0 29.6 266 1-277 60-337 (521)
17 PLN02550 threonine dehydratase 100.0 4.1E-54 9E-59 402.8 29.2 264 1-275 132-407 (591)
18 PRK08526 threonine dehydratase 100.0 3.6E-54 7.8E-59 392.7 27.1 264 1-277 43-318 (403)
19 cd06448 L-Ser-dehyd Serine deh 100.0 8.6E-54 1.9E-58 380.2 28.1 270 1-276 24-314 (316)
20 PRK08813 threonine dehydratase 100.0 7.2E-54 1.6E-58 381.8 26.8 255 1-277 56-321 (349)
21 TIGR01124 ilvA_2Cterm threonin 100.0 9.5E-54 2.1E-58 398.6 28.8 266 1-277 40-317 (499)
22 TIGR01127 ilvA_1Cterm threonin 100.0 5.1E-54 1.1E-58 391.9 26.4 263 1-277 23-297 (380)
23 PRK06382 threonine dehydratase 100.0 9.9E-54 2.2E-58 391.9 26.2 255 1-267 48-314 (406)
24 PRK08329 threonine synthase; V 100.0 3.6E-53 7.9E-58 380.7 28.6 255 1-266 80-347 (347)
25 PRK09224 threonine dehydratase 100.0 3.5E-53 7.7E-58 396.3 29.4 266 1-277 43-320 (504)
26 PLN02970 serine racemase 100.0 2.6E-53 5.6E-58 379.2 27.2 258 1-268 50-321 (328)
27 PRK08638 threonine dehydratase 100.0 3.3E-53 7.1E-58 378.3 27.4 265 1-278 50-327 (333)
28 TIGR02079 THD1 threonine dehyd 100.0 2.8E-53 6.2E-58 388.5 26.8 264 1-277 39-317 (409)
29 PRK07048 serine/threonine dehy 100.0 3.3E-53 7.2E-58 378.1 25.9 261 1-275 47-319 (321)
30 PRK06352 threonine synthase; V 100.0 2.9E-53 6.4E-58 381.7 25.6 259 1-269 51-324 (351)
31 PRK07476 eutB threonine dehydr 100.0 3.4E-53 7.4E-58 377.9 25.5 264 1-278 42-319 (322)
32 PRK08639 threonine dehydratase 100.0 5.3E-53 1.1E-57 388.5 27.3 266 1-277 48-328 (420)
33 PRK08198 threonine dehydratase 100.0 9.1E-53 2E-57 386.3 27.5 262 1-276 45-318 (404)
34 PRK08197 threonine synthase; V 100.0 1.7E-52 3.7E-57 382.6 28.5 259 1-268 103-386 (394)
35 PRK02991 D-serine dehydratase; 100.0 2.7E-52 5.8E-57 382.3 29.3 272 1-277 106-436 (441)
36 KOG1250 Threonine/serine dehyd 100.0 6.6E-53 1.4E-57 365.8 23.4 258 1-268 89-358 (457)
37 PRK06721 threonine synthase; R 100.0 4.1E-52 8.9E-57 374.6 29.5 263 1-274 51-329 (352)
38 TIGR02991 ectoine_eutB ectoine 100.0 2E-52 4.3E-57 371.6 26.9 261 1-276 42-316 (317)
39 PRK07334 threonine dehydratase 100.0 1.4E-52 2.9E-57 384.3 26.5 263 1-277 46-318 (403)
40 PRK06608 threonine dehydratase 100.0 1.2E-52 2.7E-57 375.3 25.5 255 1-266 46-312 (338)
41 PRK06110 hypothetical protein; 100.0 2.2E-52 4.8E-57 372.6 26.4 263 1-277 44-318 (322)
42 PRK07591 threonine synthase; V 100.0 4.8E-52 1E-56 381.7 28.6 260 1-268 113-396 (421)
43 PRK06815 hypothetical protein; 100.0 3.9E-52 8.4E-57 370.3 26.1 260 1-274 43-315 (317)
44 PRK07409 threonine synthase; V 100.0 1.5E-51 3.3E-56 371.6 28.4 258 1-269 54-328 (353)
45 cd01563 Thr-synth_1 Threonine 100.0 3.8E-51 8.3E-56 365.7 28.2 255 1-265 46-324 (324)
46 PRK08246 threonine dehydratase 100.0 1.6E-51 3.4E-56 365.0 24.7 252 1-268 45-308 (310)
47 PRK06381 threonine synthase; V 100.0 8.3E-51 1.8E-55 362.6 28.4 253 1-263 39-318 (319)
48 cd06447 D-Ser-dehyd D-Serine d 100.0 9.5E-51 2.1E-55 367.9 27.9 244 1-247 83-375 (404)
49 TIGR02035 D_Ser_am_lyase D-ser 100.0 2.3E-50 5.1E-55 368.1 30.3 259 1-263 101-420 (431)
50 PRK06450 threonine synthase; V 100.0 1E-50 2.2E-55 362.4 26.7 244 1-266 73-338 (338)
51 cd01562 Thr-dehyd Threonine de 100.0 5.7E-51 1.2E-55 361.8 24.7 252 1-264 40-303 (304)
52 PRK06260 threonine synthase; V 100.0 2.1E-50 4.5E-55 369.2 27.6 257 1-268 91-373 (397)
53 PLN02569 threonine synthase 100.0 3.7E-50 7.9E-55 372.1 29.0 261 1-268 158-444 (484)
54 KOG1251 Serine racemase [Signa 100.0 1.7E-50 3.7E-55 330.5 20.8 255 2-268 49-315 (323)
55 PRK08206 diaminopropionate amm 100.0 6.3E-50 1.4E-54 365.0 26.4 269 3-278 71-396 (399)
56 PRK05638 threonine synthase; V 100.0 1.8E-49 4E-54 367.4 28.4 253 1-266 88-359 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 3.5E-48 7.6E-53 333.6 28.8 220 1-260 23-243 (244)
58 TIGR00260 thrC threonine synth 100.0 2.4E-48 5.3E-53 348.2 26.5 257 1-267 47-328 (328)
59 TIGR01747 diampropi_NH3ly diam 100.0 4.9E-48 1.1E-52 349.2 28.1 267 3-276 49-375 (376)
60 TIGR03844 cysteate_syn cysteat 100.0 2.2E-48 4.8E-53 353.6 24.7 258 2-268 94-385 (398)
61 cd06446 Trp-synth_B Tryptophan 100.0 1.8E-47 3.9E-52 346.0 27.9 261 1-268 58-364 (365)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 3.1E-47 6.7E-52 346.2 26.8 270 2-277 66-395 (396)
63 PRK13028 tryptophan synthase s 100.0 2E-46 4.3E-51 339.5 29.4 263 1-269 86-393 (402)
64 TIGR00263 trpB tryptophan synt 100.0 1.3E-46 2.8E-51 342.1 28.1 262 1-268 74-380 (385)
65 KOG1481 Cysteine synthase [Ami 100.0 1.2E-46 2.6E-51 313.2 22.9 274 1-276 72-373 (391)
66 cd06449 ACCD Aminocyclopropane 100.0 5.7E-47 1.2E-51 336.1 22.3 255 1-262 25-307 (307)
67 TIGR01275 ACC_deam_rel pyridox 100.0 6.2E-47 1.3E-51 336.7 20.6 256 1-264 30-302 (311)
68 TIGR01415 trpB_rel pyridoxal-p 100.0 1.8E-45 3.9E-50 335.9 29.6 265 1-276 93-417 (419)
69 PRK04346 tryptophan synthase s 100.0 1.6E-45 3.4E-50 333.1 27.9 262 1-268 82-388 (397)
70 PLN02618 tryptophan synthase, 100.0 2.1E-45 4.5E-50 332.8 28.1 263 1-269 95-402 (410)
71 PRK12391 tryptophan synthase s 100.0 4.1E-45 8.8E-50 334.0 29.7 267 1-275 102-425 (427)
72 PRK13802 bifunctional indole-3 100.0 7.3E-45 1.6E-49 346.0 30.0 264 1-269 355-669 (695)
73 PRK12390 1-aminocyclopropane-1 100.0 1.2E-45 2.6E-50 331.5 23.2 257 1-263 40-325 (337)
74 PRK03910 D-cysteine desulfhydr 100.0 1.1E-45 2.4E-50 330.9 21.7 258 1-265 38-321 (331)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 5.5E-45 1.2E-49 327.0 23.1 258 1-265 39-326 (337)
76 PF00291 PALP: Pyridoxal-phosp 100.0 1.9E-44 4.2E-49 320.1 22.6 246 2-259 33-305 (306)
77 PRK13803 bifunctional phosphor 100.0 1.7E-42 3.8E-47 330.4 28.5 262 1-268 294-600 (610)
78 PRK14045 1-aminocyclopropane-1 100.0 4.2E-43 9.2E-48 313.7 20.9 253 1-263 44-315 (329)
79 COG0498 ThrC Threonine synthas 100.0 1.1E-40 2.3E-45 300.3 24.0 258 1-268 102-378 (411)
80 PRK09225 threonine synthase; V 100.0 7.2E-33 1.6E-37 255.0 24.6 253 1-269 104-418 (462)
81 COG2515 Acd 1-aminocyclopropan 100.0 1.5E-32 3.4E-37 232.5 18.7 253 5-264 44-314 (323)
82 cd01560 Thr-synth_2 Threonine 100.0 8.7E-32 1.9E-36 248.0 24.4 255 1-268 103-421 (460)
83 COG0133 TrpB Tryptophan syntha 100.0 3.8E-29 8.3E-34 212.4 23.0 262 2-269 80-386 (396)
84 COG1350 Predicted alternative 99.9 1.3E-25 2.7E-30 191.5 22.9 268 3-278 105-429 (432)
85 KOG1395 Tryptophan synthase be 99.9 3.4E-25 7.3E-30 190.4 21.0 265 2-274 148-457 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 2.5E-24 5.5E-29 182.0 16.1 238 4-244 113-398 (443)
87 PF03808 Glyco_tran_WecB: Glyc 92.8 0.9 2E-05 36.7 8.6 119 42-168 13-133 (172)
88 KOG2616 Pyridoxalphosphate-dep 92.3 0.29 6.4E-06 40.7 5.0 58 206-264 148-205 (266)
89 cd06533 Glyco_transf_WecG_TagA 89.9 3.5 7.5E-05 33.3 9.2 119 42-168 11-131 (171)
90 PF05368 NmrA: NmrA-like famil 89.1 8.1 0.00017 32.4 11.3 51 33-84 2-52 (233)
91 TIGR03201 dearomat_had 6-hydro 88.9 6.5 0.00014 35.3 11.2 59 20-82 158-216 (349)
92 cd08230 glucose_DH Glucose deh 88.7 3.8 8.2E-05 36.9 9.5 54 26-80 170-223 (355)
93 COG0604 Qor NADPH:quinone redu 88.4 5.1 0.00011 36.0 10.1 57 23-82 137-193 (326)
94 cd08294 leukotriene_B4_DH_like 88.4 7 0.00015 34.4 11.0 57 22-81 137-193 (329)
95 TIGR03366 HpnZ_proposed putati 87.3 5 0.00011 34.8 9.2 58 20-80 112-169 (280)
96 TIGR02819 fdhA_non_GSH formald 86.1 12 0.00027 34.3 11.5 57 20-79 177-233 (393)
97 PRK10669 putative cation:proto 85.3 14 0.00031 35.7 12.0 96 31-168 418-514 (558)
98 PRK09424 pntA NAD(P) transhydr 84.9 26 0.00057 33.5 13.1 50 31-83 166-215 (509)
99 TIGR00670 asp_carb_tr aspartat 84.7 6.7 0.00014 34.8 8.6 60 22-83 144-208 (301)
100 TIGR00696 wecB_tagA_cpsF bacte 84.2 11 0.00023 30.7 9.0 118 42-168 13-132 (177)
101 KOG0025 Zn2+-binding dehydroge 84.0 8.1 0.00018 34.0 8.4 69 12-84 147-217 (354)
102 cd08274 MDR9 Medium chain dehy 83.7 13 0.00027 33.1 10.3 57 20-80 169-225 (350)
103 KOG0023 Alcohol dehydrogenase, 83.6 9 0.00019 34.2 8.6 60 21-84 175-234 (360)
104 TIGR02825 B4_12hDH leukotriene 83.3 8 0.00017 34.2 8.7 57 22-81 132-188 (325)
105 cd01075 NAD_bind_Leu_Phe_Val_D 83.3 17 0.00036 30.1 10.0 50 10-59 6-57 (200)
106 PRK03562 glutathione-regulated 83.2 17 0.00037 35.7 11.5 51 31-84 401-451 (621)
107 cd08295 double_bond_reductase_ 83.1 9.1 0.0002 34.1 9.0 56 22-80 145-201 (338)
108 PF00764 Arginosuc_synth: Argi 83.0 16 0.00034 33.6 10.4 127 33-167 1-138 (388)
109 PRK03659 glutathione-regulated 83.0 19 0.0004 35.3 11.6 97 31-169 401-498 (601)
110 COG1064 AdhP Zn-dependent alco 81.9 10 0.00022 34.2 8.6 61 20-84 158-218 (339)
111 PRK09880 L-idonate 5-dehydroge 81.3 17 0.00036 32.5 10.1 59 20-81 161-219 (343)
112 TIGR02822 adh_fam_2 zinc-bindi 81.3 9.7 0.00021 33.9 8.5 57 20-80 157-213 (329)
113 cd08233 butanediol_DH_like (2R 81.1 25 0.00055 31.3 11.2 58 21-81 165-222 (351)
114 PF01041 DegT_DnrJ_EryC1: DegT 80.9 4.1 8.9E-05 37.0 6.0 55 31-85 41-95 (363)
115 PRK12823 benD 1,6-dihydroxycyc 80.9 18 0.00038 30.7 9.7 72 31-102 10-82 (260)
116 TIGR01064 pyruv_kin pyruvate k 80.7 37 0.0008 32.2 12.4 124 44-173 261-407 (473)
117 cd08293 PTGR2 Prostaglandin re 80.3 26 0.00056 31.1 11.0 57 23-82 147-207 (345)
118 cd08256 Zn_ADH2 Alcohol dehydr 80.2 30 0.00064 30.9 11.3 57 21-80 167-223 (350)
119 PLN03154 putative allyl alcoho 80.0 24 0.00051 31.7 10.6 57 22-81 152-209 (348)
120 PRK06348 aspartate aminotransf 79.7 41 0.00089 30.6 12.2 52 31-83 90-141 (384)
121 TIGR03451 mycoS_dep_FDH mycoth 79.6 24 0.00053 31.7 10.6 57 22-81 170-226 (358)
122 PRK12743 oxidoreductase; Provi 79.5 24 0.00053 29.8 10.1 72 31-102 4-78 (256)
123 PF02826 2-Hacid_dh_C: D-isome 79.5 28 0.00061 28.0 10.0 115 31-170 37-153 (178)
124 cd06324 PBP1_ABC_sugar_binding 79.3 42 0.00091 29.2 17.9 43 124-169 192-238 (305)
125 PF00185 OTCace: Aspartate/orn 78.7 12 0.00025 29.8 7.2 46 38-83 12-65 (158)
126 PF01210 NAD_Gly3P_dh_N: NAD-d 78.5 5.1 0.00011 31.7 5.2 42 33-77 2-43 (157)
127 cd08292 ETR_like_2 2-enoyl thi 78.4 25 0.00054 30.7 10.1 55 21-78 132-186 (324)
128 PRK08993 2-deoxy-D-gluconate 3 77.9 35 0.00076 28.8 10.6 70 31-101 12-82 (253)
129 PF00107 ADH_zinc_N: Zinc-bind 77.9 9.3 0.0002 28.6 6.3 85 42-168 3-88 (130)
130 cd08281 liver_ADH_like1 Zinc-d 77.8 29 0.00063 31.4 10.6 56 22-80 185-240 (371)
131 PRK12481 2-deoxy-D-gluconate 3 77.8 27 0.00059 29.5 9.9 71 31-102 10-81 (251)
132 COG1751 Uncharacterized conser 77.6 29 0.00063 27.4 8.7 74 4-83 7-90 (186)
133 PRK06935 2-deoxy-D-gluconate 3 77.5 29 0.00062 29.4 10.0 72 31-102 17-89 (258)
134 COG1063 Tdh Threonine dehydrog 77.5 55 0.0012 29.6 14.8 51 32-84 171-222 (350)
135 COG2130 Putative NADP-dependen 77.2 21 0.00047 31.6 8.8 59 21-82 143-202 (340)
136 PRK05993 short chain dehydroge 77.2 43 0.00093 28.8 11.1 51 31-84 6-56 (277)
137 cd08296 CAD_like Cinnamyl alco 77.0 30 0.00065 30.6 10.3 51 25-79 160-210 (333)
138 COG0078 ArgF Ornithine carbamo 76.6 18 0.00038 32.0 8.2 54 31-84 155-214 (310)
139 KOG0024 Sorbitol dehydrogenase 76.5 28 0.00062 31.2 9.5 63 19-84 160-222 (354)
140 PRK14030 glutamate dehydrogena 76.0 21 0.00046 33.5 9.1 53 9-61 207-259 (445)
141 PRK13656 trans-2-enoyl-CoA red 75.9 64 0.0014 29.8 11.9 47 13-60 24-73 (398)
142 PTZ00354 alcohol dehydrogenase 75.6 40 0.00086 29.5 10.7 55 24-81 136-190 (334)
143 TIGR02818 adh_III_F_hyde S-(hy 74.8 24 0.00052 31.9 9.2 57 22-81 179-235 (368)
144 cd08239 THR_DH_like L-threonin 74.8 25 0.00055 31.1 9.2 59 20-81 155-213 (339)
145 PRK10309 galactitol-1-phosphat 74.3 24 0.00053 31.4 9.1 57 21-80 153-209 (347)
146 PRK08589 short chain dehydroge 74.3 31 0.00066 29.6 9.3 72 31-102 8-80 (272)
147 PRK07550 hypothetical protein; 74.2 69 0.0015 29.1 12.9 53 31-84 91-143 (386)
148 PRK08226 short chain dehydroge 74.0 34 0.00073 29.0 9.5 71 31-101 8-79 (263)
149 cd08287 FDH_like_ADH3 formalde 73.9 51 0.0011 29.1 11.0 53 23-78 163-215 (345)
150 TIGR01832 kduD 2-deoxy-D-gluco 73.8 45 0.00097 27.9 10.1 70 31-101 7-77 (248)
151 PRK09147 succinyldiaminopimela 73.7 72 0.0016 29.1 13.2 79 4-84 64-146 (396)
152 KOG1201 Hydroxysteroid 17-beta 73.5 49 0.0011 29.3 10.1 73 30-103 39-113 (300)
153 PRK06182 short chain dehydroge 73.5 55 0.0012 27.9 10.8 67 31-101 5-71 (273)
154 cd08297 CAD3 Cinnamyl alcohol 73.2 45 0.00097 29.5 10.4 52 25-79 162-213 (341)
155 KOG1205 Predicted dehydrogenas 72.9 36 0.00078 29.9 9.2 73 31-103 14-90 (282)
156 cd08242 MDR_like Medium chain 72.9 27 0.00058 30.6 8.8 55 21-79 148-202 (319)
157 PF00070 Pyr_redox: Pyridine n 72.8 27 0.00058 23.8 7.9 49 33-81 2-59 (80)
158 PRK07109 short chain dehydroge 72.8 26 0.00057 31.3 8.8 72 31-102 10-83 (334)
159 cd00401 AdoHcyase S-adenosyl-L 72.7 18 0.00038 33.7 7.7 53 24-80 197-249 (413)
160 PF04127 DFP: DNA / pantothena 72.6 29 0.00062 28.4 8.2 63 31-102 21-83 (185)
161 TIGR01751 crot-CoA-red crotony 72.6 30 0.00064 31.7 9.3 56 24-82 185-240 (398)
162 PF00106 adh_short: short chai 72.5 38 0.00081 26.3 8.8 54 31-84 2-59 (167)
163 PRK08703 short chain dehydroge 72.3 50 0.0011 27.4 10.1 31 31-61 8-38 (239)
164 PLN02740 Alcohol dehydrogenase 72.3 25 0.00054 32.0 8.7 57 22-81 192-248 (381)
165 cd08285 NADP_ADH NADP(H)-depen 71.9 54 0.0012 29.2 10.7 56 21-79 159-214 (351)
166 PRK07062 short chain dehydroge 71.8 61 0.0013 27.4 10.6 32 31-62 10-41 (265)
167 cd08289 MDR_yhfp_like Yhfp put 71.3 38 0.00083 29.6 9.5 48 29-79 147-194 (326)
168 PRK12937 short chain dehydroge 71.3 54 0.0012 27.2 10.0 71 31-101 7-80 (245)
169 PTZ00079 NADP-specific glutama 70.9 34 0.00073 32.2 9.1 54 9-62 216-269 (454)
170 cd08231 MDR_TM0436_like Hypoth 70.7 74 0.0016 28.4 11.4 52 24-79 173-225 (361)
171 PRK13394 3-hydroxybutyrate deh 70.4 45 0.00097 28.1 9.4 53 31-83 9-62 (262)
172 COG0159 TrpA Tryptophan syntha 70.4 43 0.00093 29.1 9.0 86 8-97 76-168 (265)
173 cd08300 alcohol_DH_class_III c 70.2 30 0.00065 31.2 8.7 57 22-81 180-236 (368)
174 PRK08628 short chain dehydroge 69.9 46 0.00099 28.0 9.4 54 31-84 9-62 (258)
175 PRK12771 putative glutamate sy 69.8 12 0.00026 36.3 6.2 55 27-82 135-207 (564)
176 PRK06139 short chain dehydroge 69.6 30 0.00066 30.9 8.4 53 31-83 9-62 (330)
177 cd08291 ETR_like_1 2-enoyl thi 69.6 37 0.00081 29.8 9.0 49 31-82 145-194 (324)
178 PRK05396 tdh L-threonine 3-deh 69.5 36 0.00078 30.1 9.0 51 27-80 162-212 (341)
179 cd08277 liver_alcohol_DH_like 69.5 36 0.00077 30.7 9.0 56 22-80 178-233 (365)
180 PRK08277 D-mannonate oxidoredu 69.4 51 0.0011 28.2 9.7 53 31-83 12-65 (278)
181 PRK07478 short chain dehydroge 69.4 47 0.001 27.9 9.3 72 31-102 8-81 (254)
182 PRK07791 short chain dehydroge 69.2 55 0.0012 28.4 9.9 72 31-102 8-90 (286)
183 PRK10754 quinone oxidoreductas 69.1 79 0.0017 27.6 11.1 55 22-79 134-188 (327)
184 cd08269 Zn_ADH9 Alcohol dehydr 69.0 75 0.0016 27.4 11.4 55 21-78 122-176 (312)
185 cd08250 Mgc45594_like Mgc45594 69.0 74 0.0016 27.8 10.8 53 23-78 134-186 (329)
186 PF00107 ADH_zinc_N: Zinc-bind 68.8 14 0.0003 27.6 5.3 16 69-84 7-22 (130)
187 cd08246 crotonyl_coA_red croto 68.7 23 0.00051 32.2 7.7 55 24-81 189-243 (393)
188 PRK07454 short chain dehydroge 68.5 54 0.0012 27.3 9.4 71 31-101 8-80 (241)
189 cd08301 alcohol_DH_plants Plan 68.4 34 0.00074 30.8 8.7 57 22-81 181-237 (369)
190 PRK06836 aspartate aminotransf 68.3 70 0.0015 29.2 10.8 52 32-84 98-149 (394)
191 cd08298 CAD2 Cinnamyl alcohol 68.2 38 0.00082 29.7 8.8 53 22-78 161-213 (329)
192 PRK08303 short chain dehydroge 68.2 62 0.0013 28.5 10.0 72 31-102 10-93 (305)
193 TIGR03538 DapC_gpp succinyldia 68.1 96 0.0021 28.2 13.1 79 4-84 63-145 (393)
194 PRK15481 transcriptional regul 67.9 1E+02 0.0022 28.5 13.0 80 32-115 143-225 (431)
195 cd08284 FDH_like_2 Glutathione 67.8 39 0.00085 29.9 8.8 53 24-79 163-215 (344)
196 TIGR00692 tdh L-threonine 3-de 67.1 52 0.0011 29.2 9.5 51 26-79 159-209 (340)
197 COG1587 HemD Uroporphyrinogen- 66.9 65 0.0014 27.5 9.6 119 42-169 86-211 (248)
198 cd08245 CAD Cinnamyl alcohol d 66.8 46 0.001 29.2 9.0 56 22-81 156-211 (330)
199 cd08244 MDR_enoyl_red Possible 66.7 86 0.0019 27.2 10.8 54 22-78 136-189 (324)
200 PRK07523 gluconate 5-dehydroge 66.6 50 0.0011 27.8 8.9 53 31-83 12-65 (255)
201 PRK10083 putative oxidoreducta 66.6 70 0.0015 28.2 10.2 58 21-81 153-211 (339)
202 PRK05786 fabG 3-ketoacyl-(acyl 66.4 48 0.001 27.4 8.7 32 31-62 7-38 (238)
203 PRK08261 fabG 3-ketoacyl-(acyl 66.4 74 0.0016 29.6 10.7 72 29-101 210-281 (450)
204 cd08288 MDR_yhdh Yhdh putative 66.4 49 0.0011 28.9 9.1 51 28-81 146-196 (324)
205 COG0075 Serine-pyruvate aminot 66.1 36 0.00078 31.3 8.1 53 32-84 58-111 (383)
206 PRK05876 short chain dehydroge 66.1 64 0.0014 27.8 9.6 72 31-102 8-81 (275)
207 COG2894 MinD Septum formation 66.1 60 0.0013 27.7 8.6 116 45-175 23-150 (272)
208 PRK12828 short chain dehydroge 65.9 68 0.0015 26.3 9.5 54 31-84 9-63 (239)
209 cd08259 Zn_ADH5 Alcohol dehydr 65.8 53 0.0012 28.6 9.3 52 24-78 158-209 (332)
210 PLN00175 aminotransferase fami 65.8 1.1E+02 0.0024 28.2 12.3 83 32-115 117-200 (413)
211 PRK08063 enoyl-(acyl carrier p 65.7 72 0.0016 26.6 9.7 54 31-84 6-61 (250)
212 PRK06128 oxidoreductase; Provi 65.7 90 0.002 27.2 10.6 72 31-102 57-132 (300)
213 cd08258 Zn_ADH4 Alcohol dehydr 65.6 93 0.002 27.2 10.7 54 23-78 159-212 (306)
214 PRK06114 short chain dehydroge 65.5 82 0.0018 26.5 10.1 53 31-83 10-64 (254)
215 PF13561 adh_short_C2: Enoyl-( 65.5 38 0.00083 28.3 7.9 65 37-102 4-70 (241)
216 PRK05867 short chain dehydroge 65.4 61 0.0013 27.2 9.2 71 31-101 11-83 (253)
217 cd08251 polyketide_synthase po 65.3 86 0.0019 26.7 10.7 55 21-78 113-167 (303)
218 PRK09134 short chain dehydroge 65.3 78 0.0017 26.7 9.9 53 31-83 11-65 (258)
219 PRK05557 fabG 3-ketoacyl-(acyl 65.2 67 0.0014 26.5 9.4 54 31-84 7-62 (248)
220 PRK07097 gluconate 5-dehydroge 65.2 53 0.0012 27.9 8.9 71 31-101 12-84 (265)
221 PRK06194 hypothetical protein; 65.1 77 0.0017 27.2 9.9 71 31-101 8-80 (287)
222 PRK12779 putative bifunctional 65.1 55 0.0012 34.0 10.1 32 30-61 306-337 (944)
223 PRK11891 aspartate carbamoyltr 65.0 44 0.00094 31.3 8.6 52 32-83 243-300 (429)
224 PF00290 Trp_syntA: Tryptophan 65.0 93 0.002 27.0 10.3 70 8-81 69-145 (259)
225 COG0399 WecE Predicted pyridox 64.9 58 0.0012 29.9 9.2 86 31-116 50-137 (374)
226 cd05313 NAD_bind_2_Glu_DH NAD( 64.7 41 0.00088 29.1 7.8 53 10-62 18-70 (254)
227 PRK09422 ethanol-active dehydr 64.6 79 0.0017 27.8 10.1 56 21-80 155-211 (338)
228 PRK07806 short chain dehydroge 64.5 83 0.0018 26.2 10.2 53 31-83 8-62 (248)
229 cd08243 quinone_oxidoreductase 64.3 61 0.0013 28.0 9.3 54 24-80 138-191 (320)
230 COG2242 CobL Precorrin-6B meth 64.2 58 0.0013 26.7 8.1 130 129-264 27-166 (187)
231 PF07279 DUF1442: Protein of u 64.2 40 0.00087 28.3 7.3 55 20-77 35-94 (218)
232 PRK05866 short chain dehydroge 64.1 65 0.0014 28.1 9.3 71 31-101 42-114 (293)
233 PRK06505 enoyl-(acyl carrier p 64.1 77 0.0017 27.2 9.7 71 31-102 9-83 (271)
234 PLN02702 L-idonate 5-dehydroge 64.1 68 0.0015 28.8 9.7 57 22-81 175-231 (364)
235 PRK08862 short chain dehydroge 63.9 56 0.0012 27.3 8.6 52 31-82 7-59 (227)
236 PRK08936 glucose-1-dehydrogena 63.9 89 0.0019 26.3 10.2 72 31-102 9-83 (261)
237 TIGR02823 oxido_YhdH putative 63.8 57 0.0012 28.5 9.0 50 26-78 142-192 (323)
238 PLN02827 Alcohol dehydrogenase 63.8 62 0.0013 29.4 9.4 56 22-80 187-242 (378)
239 cd08261 Zn_ADH7 Alcohol dehydr 63.8 1E+02 0.0023 27.1 10.9 52 22-77 153-204 (337)
240 cd05211 NAD_bind_Glu_Leu_Phe_V 63.8 43 0.00094 28.1 7.7 53 11-63 4-56 (217)
241 PRK06483 dihydromonapterin red 63.7 84 0.0018 26.0 10.3 68 31-101 4-71 (236)
242 PRK07792 fabG 3-ketoacyl-(acyl 63.6 92 0.002 27.3 10.3 54 31-84 14-69 (306)
243 cd05282 ETR_like 2-enoyl thioe 63.6 69 0.0015 27.8 9.5 53 23-78 133-185 (323)
244 PRK08306 dipicolinate synthase 63.5 81 0.0018 27.8 9.8 47 31-80 153-199 (296)
245 cd08264 Zn_ADH_like2 Alcohol d 63.5 50 0.0011 28.9 8.6 39 21-59 155-193 (325)
246 PRK12939 short chain dehydroge 63.4 64 0.0014 26.8 8.9 53 31-83 9-62 (250)
247 PRK09257 aromatic amino acid a 63.3 1.1E+02 0.0024 27.8 11.1 76 3-83 67-148 (396)
248 PRK15408 autoinducer 2-binding 63.0 1.1E+02 0.0025 27.3 18.0 43 124-169 199-242 (336)
249 cd08278 benzyl_alcohol_DH Benz 62.9 97 0.0021 27.9 10.5 55 23-80 181-235 (365)
250 PRK08085 gluconate 5-dehydroge 62.6 82 0.0018 26.4 9.5 71 31-101 11-83 (254)
251 cd08262 Zn_ADH8 Alcohol dehydr 62.5 74 0.0016 28.0 9.6 55 21-78 154-208 (341)
252 PF08659 KR: KR domain; Inter 62.3 53 0.0011 26.4 7.9 72 31-102 2-79 (181)
253 PRK08912 hypothetical protein; 62.2 1.2E+02 0.0027 27.4 13.2 78 4-84 62-140 (387)
254 PRK12826 3-ketoacyl-(acyl-carr 62.2 81 0.0018 26.2 9.4 53 31-83 8-61 (251)
255 cd05288 PGDH Prostaglandin deh 62.1 1.1E+02 0.0023 26.7 10.5 52 24-78 141-193 (329)
256 PF00670 AdoHcyase_NAD: S-aden 61.9 49 0.0011 26.5 7.2 89 31-146 24-112 (162)
257 PRK06108 aspartate aminotransf 61.9 1.2E+02 0.0026 27.2 12.0 76 4-84 60-137 (382)
258 cd05188 MDR Medium chain reduc 61.8 75 0.0016 26.5 9.1 52 24-79 130-181 (271)
259 PLN02342 ornithine carbamoyltr 61.7 52 0.0011 29.9 8.3 61 22-83 188-251 (348)
260 TIGR01316 gltA glutamate synth 61.6 37 0.00081 31.8 7.7 53 31-83 273-330 (449)
261 TIGR03325 BphB_TodD cis-2,3-di 61.4 98 0.0021 26.2 9.8 68 31-101 7-76 (262)
262 KOG2862 Alanine-glyoxylate ami 61.3 1.2E+02 0.0026 27.2 10.0 84 31-114 69-154 (385)
263 PRK06181 short chain dehydroge 61.2 65 0.0014 27.2 8.7 53 31-83 3-56 (263)
264 PRK05479 ketol-acid reductoiso 61.1 1.3E+02 0.0027 27.2 10.7 117 31-175 18-135 (330)
265 PRK00779 ornithine carbamoyltr 61.1 57 0.0012 29.0 8.3 61 22-83 146-209 (304)
266 PRK10537 voltage-gated potassi 61.0 1.4E+02 0.003 27.7 11.1 95 31-169 241-336 (393)
267 PRK05826 pyruvate kinase; Prov 61.0 1.4E+02 0.0029 28.4 11.2 124 44-172 263-406 (465)
268 TIGR02853 spore_dpaA dipicolin 60.9 88 0.0019 27.5 9.5 63 13-78 134-196 (287)
269 cd05285 sorbitol_DH Sorbitol d 60.9 84 0.0018 27.8 9.7 56 21-79 155-210 (343)
270 TIGR02817 adh_fam_1 zinc-bindi 60.9 63 0.0014 28.4 8.8 48 29-79 149-197 (336)
271 PRK02610 histidinol-phosphate 60.9 65 0.0014 29.2 9.0 54 31-84 92-145 (374)
272 PRK05839 hypothetical protein; 60.9 1.3E+02 0.0028 27.2 11.4 78 4-84 59-138 (374)
273 PRK06079 enoyl-(acyl carrier p 60.7 67 0.0015 27.1 8.6 31 31-61 9-41 (252)
274 PRK06172 short chain dehydroge 60.6 75 0.0016 26.6 8.9 53 31-83 9-62 (253)
275 PRK08643 acetoin reductase; Va 60.5 90 0.002 26.2 9.4 53 31-83 4-57 (256)
276 PRK12938 acetyacetyl-CoA reduc 60.3 99 0.0021 25.7 9.6 53 31-83 5-59 (246)
277 PRK12744 short chain dehydroge 60.3 84 0.0018 26.5 9.2 71 31-101 10-86 (257)
278 PF01262 AlaDh_PNT_C: Alanine 60.2 43 0.00094 26.6 6.9 50 32-84 22-71 (168)
279 PRK08217 fabG 3-ketoacyl-(acyl 60.2 75 0.0016 26.4 8.8 53 31-83 7-60 (253)
280 TIGR03801 asp_4_decarbox aspar 60.1 1.6E+02 0.0036 28.3 11.7 82 3-84 126-215 (521)
281 PRK08192 aspartate carbamoyltr 60.1 67 0.0014 29.0 8.7 52 32-83 161-218 (338)
282 PRK07231 fabG 3-ketoacyl-(acyl 59.8 1E+02 0.0022 25.6 9.9 32 31-62 7-38 (251)
283 PRK07666 fabG 3-ketoacyl-(acyl 59.7 86 0.0019 26.0 9.0 54 31-84 9-63 (239)
284 PF13460 NAD_binding_10: NADH( 59.6 26 0.00057 27.8 5.6 47 33-84 2-48 (183)
285 PRK14031 glutamate dehydrogena 59.4 48 0.001 31.1 7.8 53 10-62 208-260 (444)
286 PRK05653 fabG 3-ketoacyl-(acyl 59.4 99 0.0022 25.4 9.5 53 31-83 7-60 (246)
287 PRK03692 putative UDP-N-acetyl 59.3 76 0.0016 27.2 8.5 94 43-147 70-169 (243)
288 PRK07890 short chain dehydroge 59.2 74 0.0016 26.6 8.7 54 30-83 6-60 (258)
289 cd05283 CAD1 Cinnamyl alcohol 59.2 73 0.0016 28.2 8.9 52 26-81 167-218 (337)
290 TIGR03590 PseG pseudaminic aci 59.1 1.2E+02 0.0025 26.4 9.9 35 49-84 49-88 (279)
291 PRK05693 short chain dehydroge 59.1 1.1E+02 0.0024 26.0 10.2 67 31-101 3-69 (274)
292 COG2518 Pcm Protein-L-isoaspar 58.9 70 0.0015 26.8 7.9 99 25-145 69-171 (209)
293 cd05281 TDH Threonine dehydrog 58.9 73 0.0016 28.2 8.9 49 27-78 162-210 (341)
294 cd08299 alcohol_DH_class_I_II_ 58.9 71 0.0015 28.9 8.9 54 22-78 184-237 (373)
295 cd08282 PFDH_like Pseudomonas 58.5 78 0.0017 28.6 9.1 55 22-79 170-224 (375)
296 TIGR00561 pntA NAD(P) transhyd 58.5 49 0.0011 31.8 7.8 51 31-84 165-215 (511)
297 TIGR01831 fabG_rel 3-oxoacyl-( 58.3 1.1E+02 0.0023 25.4 9.6 52 33-84 2-55 (239)
298 PRK12935 acetoacetyl-CoA reduc 58.0 93 0.002 25.9 9.0 54 31-84 8-63 (247)
299 PRK10538 malonic semialdehyde 58.0 1E+02 0.0022 25.8 9.2 68 31-101 2-71 (248)
300 cd05278 FDH_like Formaldehyde 57.9 79 0.0017 27.9 9.0 54 22-78 161-214 (347)
301 COG2242 CobL Precorrin-6B meth 57.8 87 0.0019 25.7 8.1 131 26-174 32-165 (187)
302 PRK08278 short chain dehydroge 57.7 1.2E+02 0.0026 25.9 9.8 53 31-83 8-68 (273)
303 PRK08017 oxidoreductase; Provi 57.7 1.1E+02 0.0024 25.5 9.7 51 31-84 4-54 (256)
304 cd08267 MDR1 Medium chain dehy 57.5 87 0.0019 27.0 9.0 51 24-78 139-189 (319)
305 PRK12745 3-ketoacyl-(acyl-carr 57.5 1.1E+02 0.0024 25.5 10.1 71 31-101 4-77 (256)
306 PLN02527 aspartate carbamoyltr 57.4 71 0.0015 28.4 8.3 60 22-83 145-210 (306)
307 PRK07035 short chain dehydroge 57.1 98 0.0021 25.8 9.0 72 31-102 10-83 (252)
308 cd06306 PBP1_TorT-like TorT-li 57.1 1.2E+02 0.0026 25.6 17.0 39 126-168 176-216 (268)
309 cd05284 arabinose_DH_like D-ar 56.9 1.4E+02 0.003 26.3 10.3 50 25-78 164-214 (340)
310 PF09837 DUF2064: Uncharacteri 56.8 83 0.0018 23.7 9.5 97 45-147 2-99 (122)
311 CHL00194 ycf39 Ycf39; Provisio 56.8 51 0.0011 29.0 7.4 32 31-62 2-33 (317)
312 PRK06124 gluconate 5-dehydroge 56.7 90 0.0019 26.2 8.7 54 30-83 12-66 (256)
313 cd05279 Zn_ADH1 Liver alcohol 56.6 1.4E+02 0.003 26.8 10.4 54 22-78 177-230 (365)
314 TIGR03206 benzo_BadH 2-hydroxy 56.5 91 0.002 25.9 8.7 54 31-84 5-59 (250)
315 cd05286 QOR2 Quinone oxidoredu 56.2 1.3E+02 0.0028 25.7 10.9 53 23-78 131-183 (320)
316 PRK08594 enoyl-(acyl carrier p 56.1 1.3E+02 0.0027 25.6 10.1 72 31-102 9-85 (257)
317 PRK06720 hypothetical protein; 56.0 1E+02 0.0022 24.6 9.8 30 31-60 18-47 (169)
318 cd08234 threonine_DH_like L-th 55.9 1.3E+02 0.0027 26.4 9.9 54 22-78 153-206 (334)
319 PLN02178 cinnamyl-alcohol dehy 55.8 41 0.0009 30.6 6.8 51 27-80 177-227 (375)
320 PRK07677 short chain dehydroge 55.4 99 0.0022 25.9 8.8 53 31-83 3-56 (252)
321 cd08270 MDR4 Medium chain dehy 55.4 1.1E+02 0.0024 26.2 9.3 49 28-79 132-180 (305)
322 TIGR00658 orni_carb_tr ornithi 55.1 91 0.002 27.7 8.6 61 22-83 142-208 (304)
323 PRK12384 sorbitol-6-phosphate 55.0 1.3E+02 0.0027 25.3 10.7 31 31-61 4-34 (259)
324 cd08253 zeta_crystallin Zeta-c 54.7 1.4E+02 0.003 25.6 10.8 52 24-78 140-191 (325)
325 PRK07366 succinyldiaminopimela 54.7 1.7E+02 0.0036 26.6 12.2 83 32-116 94-179 (388)
326 PRK07814 short chain dehydroge 54.6 1E+02 0.0022 26.1 8.7 52 31-82 12-64 (263)
327 TIGR01425 SRP54_euk signal rec 54.5 1.5E+02 0.0033 27.7 10.2 19 42-60 117-135 (429)
328 TIGR02824 quinone_pig3 putativ 54.5 1.4E+02 0.003 25.6 11.0 54 22-78 133-186 (325)
329 PRK12809 putative oxidoreducta 54.5 80 0.0017 31.2 8.9 78 6-83 279-381 (639)
330 cd08260 Zn_ADH6 Alcohol dehydr 54.4 1.3E+02 0.0029 26.5 9.8 51 23-77 160-210 (345)
331 cd08248 RTN4I1 Human Reticulon 54.3 83 0.0018 27.8 8.5 46 29-78 163-208 (350)
332 PF04122 CW_binding_2: Putativ 54.3 74 0.0016 22.3 10.0 76 6-86 5-83 (92)
333 COG0300 DltE Short-chain dehyd 54.2 1.1E+02 0.0023 26.7 8.6 71 31-101 8-81 (265)
334 PRK06701 short chain dehydroge 54.2 1.5E+02 0.0032 25.8 10.1 53 31-83 48-102 (290)
335 PRK14804 ornithine carbamoyltr 54.1 73 0.0016 28.4 7.8 35 31-65 155-189 (311)
336 PRK13376 pyrB bifunctional asp 54.1 82 0.0018 30.3 8.5 52 32-83 176-233 (525)
337 PRK11706 TDP-4-oxo-6-deoxy-D-g 54.1 47 0.001 30.2 6.8 54 31-84 47-100 (375)
338 cd08249 enoyl_reductase_like e 54.0 90 0.002 27.6 8.6 49 27-79 153-201 (339)
339 KOG0022 Alcohol dehydrogenase, 54.0 1.7E+02 0.0036 26.4 12.1 115 22-174 186-301 (375)
340 cd08290 ETR 2-enoyl thioester 54.0 93 0.002 27.4 8.7 58 24-81 142-200 (341)
341 PRK08213 gluconate 5-dehydroge 53.6 1.2E+02 0.0025 25.6 8.9 54 31-84 14-68 (259)
342 PRK09414 glutamate dehydrogena 53.6 67 0.0015 30.2 7.8 52 10-61 212-263 (445)
343 PF02310 B12-binding: B12 bind 53.5 54 0.0012 24.1 6.1 92 42-144 17-113 (121)
344 cd05280 MDR_yhdh_yhfp Yhdh and 53.5 1.1E+02 0.0024 26.5 9.0 47 31-80 149-195 (325)
345 cd06268 PBP1_ABC_transporter_L 53.3 1.4E+02 0.0029 25.1 15.4 147 15-173 57-227 (298)
346 PRK12429 3-hydroxybutyrate deh 53.3 1.3E+02 0.0027 25.1 9.1 53 31-83 6-59 (258)
347 PRK02255 putrescine carbamoylt 53.3 96 0.0021 28.0 8.5 51 33-83 158-214 (338)
348 PRK06463 fabG 3-ketoacyl-(acyl 53.2 1.4E+02 0.0029 25.1 10.9 69 31-102 9-77 (255)
349 PRK06841 short chain dehydroge 53.1 1.3E+02 0.0029 25.0 9.4 32 31-62 17-48 (255)
350 PRK06500 short chain dehydroge 53.0 1.3E+02 0.0029 24.9 9.5 50 31-83 8-58 (249)
351 PRK06949 short chain dehydroge 52.9 1.1E+02 0.0023 25.7 8.6 32 31-62 11-42 (258)
352 PRK13125 trpA tryptophan synth 52.8 1.1E+02 0.0024 26.0 8.6 37 46-82 94-135 (244)
353 PRK12831 putative oxidoreducta 52.7 65 0.0014 30.4 7.7 53 31-83 282-339 (464)
354 PRK06138 short chain dehydroge 52.6 1.3E+02 0.0029 24.9 9.7 70 31-101 7-78 (252)
355 PRK06198 short chain dehydroge 52.5 1.4E+02 0.003 25.0 9.5 53 31-83 8-62 (260)
356 PRK09545 znuA high-affinity zi 52.4 89 0.0019 27.8 8.2 85 44-132 212-306 (311)
357 PLN02586 probable cinnamyl alc 52.4 81 0.0018 28.4 8.1 55 24-81 179-233 (360)
358 PRK06947 glucose-1-dehydrogena 52.2 1.1E+02 0.0024 25.4 8.6 71 31-101 4-77 (248)
359 PRK07904 short chain dehydroge 52.1 83 0.0018 26.6 7.8 52 31-82 10-65 (253)
360 PRK09242 tropinone reductase; 52.0 1.4E+02 0.0031 25.0 9.5 72 31-102 11-86 (257)
361 TIGR03537 DapC succinyldiamino 52.0 1.7E+02 0.0038 26.0 11.8 109 4-115 35-149 (350)
362 PLN02253 xanthoxin dehydrogena 52.0 1.1E+02 0.0025 26.0 8.7 31 31-61 20-50 (280)
363 CHL00200 trpA tryptophan synth 51.8 1.2E+02 0.0025 26.4 8.6 92 8-108 74-173 (263)
364 PRK06077 fabG 3-ketoacyl-(acyl 51.7 1.1E+02 0.0023 25.5 8.4 53 31-83 8-62 (252)
365 PRK08264 short chain dehydroge 51.7 79 0.0017 26.1 7.5 32 31-62 8-40 (238)
366 cd08235 iditol_2_DH_like L-idi 51.7 1.7E+02 0.0036 25.7 11.4 53 22-77 159-211 (343)
367 PRK05650 short chain dehydroge 51.7 1.4E+02 0.0031 25.2 9.3 53 31-83 2-55 (270)
368 PRK05703 flhF flagellar biosyn 51.6 68 0.0015 30.0 7.5 9 138-146 335-343 (424)
369 COG0379 NadA Quinolinate synth 51.5 1.8E+02 0.0039 26.0 12.9 165 34-224 142-319 (324)
370 PRK08416 7-alpha-hydroxysteroi 51.5 1.5E+02 0.0032 25.0 10.0 72 31-102 10-85 (260)
371 PRK08159 enoyl-(acyl carrier p 51.3 1.6E+02 0.0034 25.3 9.7 71 31-102 12-86 (272)
372 PF13580 SIS_2: SIS domain; PD 51.3 34 0.00074 26.3 4.8 35 26-60 101-137 (138)
373 COG0623 FabI Enoyl-[acyl-carri 51.3 86 0.0019 26.8 7.2 28 30-57 7-36 (259)
374 cd08238 sorbose_phosphate_red 51.2 67 0.0014 29.6 7.5 51 23-75 170-222 (410)
375 PRK05717 oxidoreductase; Valid 51.2 1.5E+02 0.0032 24.9 10.0 70 31-102 12-82 (255)
376 PRK05957 aspartate aminotransf 50.8 1.9E+02 0.0042 26.2 12.1 53 31-85 90-143 (389)
377 PRK15438 erythronate-4-phospha 50.6 1.5E+02 0.0033 27.2 9.5 132 3-158 86-223 (378)
378 KOG1197 Predicted quinone oxid 50.5 1.3E+02 0.0029 26.2 8.4 55 21-78 139-193 (336)
379 PRK12775 putative trifunctiona 50.5 1.5E+02 0.0033 31.1 10.5 56 7-62 402-462 (1006)
380 PF13380 CoA_binding_2: CoA bi 50.3 70 0.0015 23.8 6.2 45 34-78 60-104 (116)
381 TIGR02415 23BDH acetoin reduct 50.2 1.5E+02 0.0032 24.7 9.0 53 31-83 2-55 (254)
382 PLN02591 tryptophan synthase 50.2 1.5E+02 0.0033 25.5 8.9 92 8-108 61-160 (250)
383 PRK09291 short chain dehydroge 50.2 71 0.0015 26.7 7.0 32 31-62 4-35 (257)
384 PRK05854 short chain dehydroge 50.1 1.3E+02 0.0029 26.3 9.0 71 31-102 16-91 (313)
385 PRK07324 transaminase; Validat 50.1 1.4E+02 0.0029 27.1 9.2 52 32-84 82-133 (373)
386 COG0836 {ManC} Mannose-1-phosp 49.9 49 0.0011 29.6 5.9 55 32-102 80-138 (333)
387 TIGR01963 PHB_DH 3-hydroxybuty 49.9 1.3E+02 0.0028 25.0 8.6 53 31-83 3-56 (255)
388 cd08279 Zn_ADH_class_III Class 49.9 1.9E+02 0.0041 25.8 10.9 54 22-78 176-229 (363)
389 PRK07326 short chain dehydroge 49.8 1.5E+02 0.0031 24.4 9.4 31 31-61 8-38 (237)
390 PRK14805 ornithine carbamoyltr 49.7 96 0.0021 27.5 7.9 60 23-83 142-207 (302)
391 PRK04284 ornithine carbamoyltr 49.7 1.1E+02 0.0025 27.5 8.4 58 24-83 151-216 (332)
392 PRK07067 sorbitol dehydrogenas 49.4 1.6E+02 0.0034 24.7 9.2 32 31-62 8-39 (257)
393 TIGR03772 anch_rpt_subst ancho 49.4 92 0.002 29.7 8.0 94 31-132 372-474 (479)
394 PRK08265 short chain dehydroge 49.4 1.6E+02 0.0035 24.8 9.5 70 31-102 8-78 (261)
395 PRK06200 2,3-dihydroxy-2,3-dih 49.3 1.6E+02 0.0035 24.8 9.2 69 31-102 8-78 (263)
396 PRK14807 histidinol-phosphate 49.2 1.2E+02 0.0026 27.1 8.7 53 32-85 78-130 (351)
397 cd05276 p53_inducible_oxidored 49.1 1.5E+02 0.0032 25.3 9.1 52 24-78 135-186 (323)
398 PRK11658 UDP-4-amino-4-deoxy-L 49.0 1.7E+02 0.0037 26.6 9.8 53 32-84 50-102 (379)
399 PRK09072 short chain dehydroge 49.0 1.3E+02 0.0029 25.3 8.6 32 31-62 7-38 (263)
400 PRK08960 hypothetical protein; 48.9 2.1E+02 0.0045 26.0 10.3 53 31-84 93-145 (387)
401 PRK12414 putative aminotransfe 48.9 2.1E+02 0.0045 26.0 12.1 51 32-84 92-143 (384)
402 PRK05872 short chain dehydroge 48.8 1.6E+02 0.0034 25.6 9.2 68 31-102 11-83 (296)
403 PRK09730 putative NAD(P)-bindi 48.8 1.5E+02 0.0032 24.5 8.7 53 31-83 3-57 (247)
404 cd01137 PsaA Metal binding pro 48.7 84 0.0018 27.5 7.3 63 31-102 178-248 (287)
405 cd08255 2-desacetyl-2-hydroxye 48.6 1.4E+02 0.0031 25.3 8.8 51 22-76 91-142 (277)
406 PRK05565 fabG 3-ketoacyl-(acyl 48.6 1.5E+02 0.0033 24.4 9.0 54 31-84 7-62 (247)
407 PRK13886 conjugal transfer pro 48.3 1.8E+02 0.0038 25.0 12.4 124 41-168 19-151 (241)
408 PRK12726 flagellar biosynthesi 48.2 80 0.0017 29.3 7.2 51 3-57 213-265 (407)
409 PRK07774 short chain dehydroge 48.2 1.6E+02 0.0034 24.4 9.3 32 31-62 8-39 (250)
410 PLN00145 tyrosine/nicotianamin 48.2 2.3E+02 0.005 26.3 10.7 52 31-83 118-169 (430)
411 PRK06113 7-alpha-hydroxysteroi 48.0 1.5E+02 0.0034 24.7 8.8 71 31-101 13-85 (255)
412 PRK08340 glucose-1-dehydrogena 48.0 1.7E+02 0.0036 24.6 9.3 31 31-61 2-32 (259)
413 PRK13111 trpA tryptophan synth 48.0 1.4E+02 0.003 25.9 8.4 93 8-108 71-171 (258)
414 PF11760 CbiG_N: Cobalamin syn 48.0 36 0.00079 24.0 3.9 48 128-175 4-51 (84)
415 COG1062 AdhC Zn-dependent alco 48.0 2.1E+02 0.0045 26.1 9.5 114 20-173 177-291 (366)
416 PRK05166 histidinol-phosphate 48.0 1.2E+02 0.0025 27.4 8.4 82 32-114 90-171 (371)
417 PRK08361 aspartate aminotransf 47.9 2.2E+02 0.0047 25.9 11.9 52 32-84 95-146 (391)
418 COG2247 LytB Putative cell wal 47.9 1.5E+02 0.0033 26.5 8.6 41 63-103 87-127 (337)
419 PRK06702 O-acetylhomoserine am 47.9 2.1E+02 0.0046 26.8 10.2 79 32-115 78-160 (432)
420 PRK04870 histidinol-phosphate 47.8 1.4E+02 0.003 26.7 8.9 83 32-115 83-166 (356)
421 PRK02102 ornithine carbamoyltr 47.7 1.2E+02 0.0027 27.3 8.3 60 22-83 149-216 (331)
422 cd08286 FDH_like_ADH2 formalde 47.6 1.6E+02 0.0034 26.0 9.1 52 23-78 161-213 (345)
423 PRK13243 glyoxylate reductase; 47.6 2E+02 0.0044 25.8 9.8 96 31-150 151-246 (333)
424 cd08187 BDH Butanol dehydrogen 47.3 2.3E+02 0.0049 25.9 10.3 96 54-156 6-105 (382)
425 PTZ00377 alanine aminotransfer 47.3 2.5E+02 0.0055 26.5 11.7 54 31-84 139-192 (481)
426 PRK07985 oxidoreductase; Provi 47.2 1.7E+02 0.0037 25.4 9.1 72 31-102 51-126 (294)
427 PRK06567 putative bifunctional 47.2 1.6E+02 0.0035 30.8 9.8 32 30-61 383-414 (1028)
428 PRK08415 enoyl-(acyl carrier p 47.1 1.9E+02 0.004 24.9 9.8 71 31-102 7-81 (274)
429 PLN02450 1-aminocyclopropane-1 47.1 2.5E+02 0.0055 26.4 11.8 78 3-84 84-165 (468)
430 PRK12562 ornithine carbamoyltr 46.9 1.2E+02 0.0027 27.3 8.2 52 32-83 158-217 (334)
431 PRK00257 erythronate-4-phospha 46.9 2.1E+02 0.0046 26.3 9.8 131 3-157 86-222 (381)
432 KOG3857 Alcohol dehydrogenase, 46.7 70 0.0015 29.0 6.3 82 63-149 56-140 (465)
433 PRK07775 short chain dehydroge 46.5 1.9E+02 0.004 24.7 9.3 53 31-83 12-65 (274)
434 TIGR00936 ahcY adenosylhomocys 46.4 63 0.0014 30.0 6.4 91 31-148 196-286 (406)
435 PRK12749 quinate/shikimate deh 46.2 1.2E+02 0.0027 26.6 8.0 32 32-63 126-157 (288)
436 PRK07576 short chain dehydroge 46.2 1.8E+02 0.0039 24.6 9.0 53 31-83 11-64 (264)
437 PRK07069 short chain dehydroge 46.2 1.7E+02 0.0037 24.2 9.5 31 32-62 2-32 (251)
438 PRK10490 sensor protein KdpD; 46.2 2.1E+02 0.0046 29.6 10.8 106 32-144 253-375 (895)
439 cd06310 PBP1_ABC_sugar_binding 46.2 1.8E+02 0.0038 24.4 17.3 41 126-169 175-217 (273)
440 cd05289 MDR_like_2 alcohol deh 46.1 1.7E+02 0.0038 24.8 9.0 50 24-77 140-189 (309)
441 smart00822 PKS_KR This enzymat 46.0 1.3E+02 0.0029 22.9 8.6 53 31-83 2-59 (180)
442 TIGR01264 tyr_amTase_E tyrosin 46.0 2.3E+02 0.0051 25.7 11.7 52 31-83 96-147 (401)
443 COG0493 GltD NADPH-dependent g 45.9 1.8E+02 0.004 27.5 9.5 95 31-146 124-219 (457)
444 PRK08339 short chain dehydroge 45.9 1.6E+02 0.0035 24.9 8.7 31 31-61 10-40 (263)
445 PF13478 XdhC_C: XdhC Rossmann 45.9 33 0.0007 26.5 3.8 31 33-63 1-31 (136)
446 KOG1177 Long chain fatty acid 45.7 2.5E+02 0.0054 26.9 9.9 83 21-104 95-181 (596)
447 PRK07370 enoyl-(acyl carrier p 45.7 1.9E+02 0.004 24.5 9.6 71 31-102 8-85 (258)
448 PRK07060 short chain dehydroge 45.6 1.2E+02 0.0026 25.0 7.7 51 31-84 11-62 (245)
449 PLN02583 cinnamoyl-CoA reducta 45.4 1.2E+02 0.0026 26.4 7.9 32 31-62 8-39 (297)
450 PRK06180 short chain dehydroge 45.4 1.7E+02 0.0037 24.9 8.8 32 31-62 6-37 (277)
451 PRK12825 fabG 3-ketoacyl-(acyl 45.3 1.7E+02 0.0037 24.0 10.0 53 31-83 8-62 (249)
452 PLN02623 pyruvate kinase 45.3 3.1E+02 0.0067 26.9 11.0 122 43-172 366-509 (581)
453 cd08240 6_hydroxyhexanoate_dh_ 45.3 2.2E+02 0.0047 25.2 10.6 48 28-78 175-222 (350)
454 COG1922 WecG Teichoic acid bio 45.2 1.4E+02 0.0031 25.8 7.9 116 42-168 72-193 (253)
455 PRK08251 short chain dehydroge 45.1 1.8E+02 0.0039 24.1 9.0 32 31-62 4-35 (248)
456 PTZ00433 tyrosine aminotransfe 45.1 2.5E+02 0.0054 25.8 10.3 53 31-84 105-157 (412)
457 TIGR02379 ECA_wecE TDP-4-keto- 45.0 72 0.0016 29.1 6.6 55 31-85 47-101 (376)
458 cd08283 FDH_like_1 Glutathione 45.0 1.7E+02 0.0037 26.6 9.1 55 22-79 178-233 (386)
459 KOG1176 Acyl-CoA synthetase [L 44.9 3E+02 0.0065 26.7 12.5 59 26-84 69-127 (537)
460 PRK06197 short chain dehydroge 44.9 1.8E+02 0.004 25.2 9.0 32 31-62 18-49 (306)
461 PRK08068 transaminase; Reviewe 44.8 2.4E+02 0.0052 25.5 11.9 77 5-84 70-147 (389)
462 PRK07392 threonine-phosphate d 44.7 1.4E+02 0.003 26.7 8.4 52 31-84 75-126 (360)
463 cd08254 hydroxyacyl_CoA_DH 6-h 44.4 2.1E+02 0.0046 24.8 10.8 54 23-80 160-213 (338)
464 TIGR01318 gltD_gamma_fam gluta 44.4 1.1E+02 0.0023 28.9 7.8 51 31-81 142-210 (467)
465 PRK07063 short chain dehydroge 44.3 1.9E+02 0.0041 24.2 9.5 72 31-102 9-84 (260)
466 PRK12810 gltD glutamate syntha 44.2 1.2E+02 0.0026 28.6 8.1 76 6-81 112-212 (471)
467 PRK07865 N-succinyldiaminopime 44.2 2.4E+02 0.0051 25.3 9.8 53 31-83 87-139 (364)
468 cd06313 PBP1_ABC_sugar_binding 44.1 2E+02 0.0043 24.3 9.2 42 125-169 174-216 (272)
469 PLN02477 glutamate dehydrogena 44.0 1.2E+02 0.0025 28.3 7.7 53 10-62 186-238 (410)
470 cd06320 PBP1_allose_binding Pe 44.0 1.9E+02 0.0042 24.2 17.3 34 134-169 181-216 (275)
471 PLN02368 alanine transaminase 43.9 2.7E+02 0.0058 25.8 11.4 76 4-84 106-184 (407)
472 PRK12778 putative bifunctional 43.8 3.2E+02 0.007 27.5 11.5 97 30-146 431-528 (752)
473 PRK07200 aspartate/ornithine c 43.7 98 0.0021 28.7 7.2 45 39-83 204-254 (395)
474 PRK11749 dihydropyrimidine deh 43.7 1.1E+02 0.0023 28.7 7.7 52 31-82 274-331 (457)
475 PF02737 3HCDH_N: 3-hydroxyacy 43.5 49 0.0011 26.8 4.7 30 33-62 2-31 (180)
476 PRK09275 aspartate aminotransf 43.5 3.1E+02 0.0068 26.5 11.6 113 3-115 132-254 (527)
477 PRK08642 fabG 3-ketoacyl-(acyl 43.4 1.9E+02 0.0041 24.0 9.6 32 31-62 7-38 (253)
478 PRK06603 enoyl-(acyl carrier p 43.4 2E+02 0.0044 24.3 9.5 71 31-102 10-84 (260)
479 PRK06207 aspartate aminotransf 43.4 2.6E+02 0.0057 25.6 13.2 52 32-84 104-155 (405)
480 PRK07201 short chain dehydroge 43.3 1.6E+02 0.0034 28.9 9.1 72 31-102 373-446 (657)
481 PRK06101 short chain dehydroge 43.2 1.6E+02 0.0036 24.4 8.2 47 31-80 3-49 (240)
482 PF00448 SRP54: SRP54-type pro 43.2 1.9E+02 0.004 23.8 8.8 78 3-84 8-91 (196)
483 PF03853 YjeF_N: YjeF-related 43.1 1.7E+02 0.0037 23.3 8.0 30 31-60 27-59 (169)
484 cd08241 QOR1 Quinone oxidoredu 43.0 2.1E+02 0.0046 24.4 10.7 53 23-78 134-186 (323)
485 PRK07832 short chain dehydroge 43.0 1.6E+02 0.0036 24.9 8.3 49 31-79 2-51 (272)
486 cd01011 nicotinamidase Nicotin 43.0 1.5E+02 0.0032 24.2 7.6 59 17-79 130-195 (196)
487 PF04989 CmcI: Cephalosporin h 42.8 66 0.0014 26.8 5.4 46 124-171 23-69 (206)
488 cd08185 Fe-ADH1 Iron-containin 42.8 1.6E+02 0.0035 26.8 8.6 95 55-156 4-102 (380)
489 PRK08945 putative oxoacyl-(acy 42.6 2E+02 0.0043 23.9 9.1 32 31-62 14-45 (247)
490 PRK13581 D-3-phosphoglycerate 42.5 2.3E+02 0.005 27.3 9.8 104 31-158 141-246 (526)
491 PRK03515 ornithine carbamoyltr 42.5 1.6E+02 0.0035 26.6 8.2 52 32-83 158-217 (336)
492 PRK13984 putative oxidoreducta 42.5 1.1E+02 0.0023 29.9 7.8 51 31-81 284-352 (604)
493 cd08265 Zn_ADH3 Alcohol dehydr 42.5 87 0.0019 28.4 6.8 53 24-79 199-251 (384)
494 PRK12747 short chain dehydroge 42.4 1.7E+02 0.0037 24.4 8.2 53 31-83 6-60 (252)
495 PRK06997 enoyl-(acyl carrier p 42.2 2.1E+02 0.0046 24.2 9.3 71 31-102 8-82 (260)
496 PRK09754 phenylpropionate diox 42.2 2.2E+02 0.0047 26.0 9.4 33 31-63 145-177 (396)
497 PRK12742 oxidoreductase; Provi 42.2 1.9E+02 0.0042 23.7 8.9 52 31-84 8-60 (237)
498 PRK07066 3-hydroxybutyryl-CoA 42.2 2.6E+02 0.0055 25.1 14.1 32 31-62 8-39 (321)
499 PF12831 FAD_oxidored: FAD dep 42.2 36 0.00078 31.7 4.2 31 33-63 2-32 (428)
500 PRK15407 lipopolysaccharide bi 42.1 2.7E+02 0.0058 26.1 10.0 54 31-84 79-140 (438)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=2.9e-65 Score=453.88 Aligned_cols=284 Identities=89% Similarity=1.349 Sum_probs=265.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.++|.+.+|.+.||++|+||||+|+|++|+.+|++|+||||++++..|++.++.|||+|+
T Consensus 38 ~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 117 (322)
T PLN02565 38 MMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELV 117 (322)
T ss_pred ccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Confidence 58999999999999999999999998888678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++..+++++.+.+++++++.+++|+++||+||.|+..||+|+++||++|+++.||+||+|+|+||+++|+++++|+.+
T Consensus 118 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~ 197 (322)
T PLN02565 118 LTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQN 197 (322)
T ss_pred EeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhC
Confidence 99875455778889999988866789999999999988899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||+|||++++++..+++.++.+++++.+..|..+..+.+|+++.|+|+|++++++.|++++|+++||++|++++++
T Consensus 198 p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa 277 (322)
T PLN02565 198 PDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAA 277 (322)
T ss_pred CCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHH
Confidence 99999999999999888777777788999887777777788899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhhhccccC
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 284 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
+++++++..++++||+|+||+|.||+++.+|+.+....++|+||
T Consensus 278 ~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 278 IKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred HHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 99987765568899999999999999999999999999999997
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-63 Score=427.85 Aligned_cols=264 Identities=60% Similarity=0.994 Sum_probs=251.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
|+||+||.|||.+.+++.+|.++|.++|| .+||++||||+|+++|+.|+.+|+++++|||++++.+|++.|+.|||+|+
T Consensus 34 ~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi 112 (300)
T COG0031 34 SFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVI 112 (300)
T ss_pred hcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 68999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-hHHHHHHHHHHHHhCCC-eEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHh
Q 023227 81 LTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 81 ~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
.++.... +..+.+++++++++.|+ .++++||+||.||..||.+++.||++|+++.+|++|+.+|||||++|++++||+
T Consensus 113 ~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~ 192 (300)
T COG0031 113 LTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKE 192 (300)
T ss_pred EcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHh
Confidence 9998444 77889999999999988 777889999999999999999999999988899999999999999999999999
Q ss_pred hCCCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHH
Q 023227 159 KNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 238 (285)
Q Consensus 159 ~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~a 238 (285)
.+|++|+++|||.+|+.+..+. .++.++||+.+++|.+++.+.+|+++.|+|+++++++|+|+++||+++++|||++++
T Consensus 193 ~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~ 271 (300)
T COG0031 193 RNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALA 271 (300)
T ss_pred hCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHH
Confidence 9999999999999999887666 889999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcc
Q 023227 239 AAIEIAKRPENAGKLIVVIFPSFGERYLS 267 (285)
Q Consensus 239 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 267 (285)
++++++++.. ++++||+|+||+|+||+|
T Consensus 272 aa~~~a~~~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 272 AALKLAKELP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred HHHHHHHhcC-CCCeEEEEECCCcccccC
Confidence 9999998864 689999999999999997
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3.4e-62 Score=440.16 Aligned_cols=284 Identities=62% Similarity=1.052 Sum_probs=260.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.+++++|.+.||.++||++|+||||+++|++|+.+|++|+||||+.++..|+..++.+||+|+
T Consensus 82 ~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi 161 (368)
T PLN02556 82 MFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELV 161 (368)
T ss_pred ccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 57999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++...+...++.+++++++.+++++++||+||.++..||.++++||++|+.+.+|+||+|+|||||++|+++++|+.+
T Consensus 162 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~ 241 (368)
T PLN02556 162 LTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKN 241 (368)
T ss_pred EECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhC
Confidence 99864444567788888888877899999999999966799999999999986689999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||+|||.+++.+..+++..+.+++++.+..|..++.+++|+++.|+|+|++++++.|++++|+++||++|++++++
T Consensus 242 p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aa 321 (368)
T PLN02556 242 PNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAA 321 (368)
T ss_pred CCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHH
Confidence 99999999999998887777777777888777667777888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhhhccccC
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 284 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
++++++...++++||+|++|+|+||+|+.+|++|...++.|-.+
T Consensus 322 l~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 322 LRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred HHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 99887654468899999999999999999999999999888654
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.6e-61 Score=431.15 Aligned_cols=283 Identities=71% Similarity=1.114 Sum_probs=257.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..++++|.+.|+.++||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.+||+|+
T Consensus 40 ~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 119 (323)
T PLN00011 40 MMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVH 119 (323)
T ss_pred ccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 57999999999999999999999999888778999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++.....++.++.+++++++.+++++++||+|+.++..||.+++.||++|+.++||+||+|+|+|||++|+++++|+.+
T Consensus 120 ~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~ 199 (323)
T PLN00011 120 LTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKN 199 (323)
T ss_pred EECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhC
Confidence 99975444566778888888766789999999999877899999999999996679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||||||++++++..+++..+.+++++.+..|..+..+.+|+++.|+|+|++++++.|++++|+++||++|++++++
T Consensus 200 ~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa 279 (323)
T PLN00011 200 KDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAA 279 (323)
T ss_pred CCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHH
Confidence 99999999999998887777777778888887667777778899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhhhcccc
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTF 283 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~ 283 (285)
++++++...++++||+|++|+|+||+|+.+|+.|+...++.+.
T Consensus 280 ~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~ 322 (323)
T PLN00011 280 LKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPI 322 (323)
T ss_pred HHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCC
Confidence 9988765456789999999999999999999988776555543
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.3e-61 Score=434.48 Aligned_cols=272 Identities=73% Similarity=1.173 Sum_probs=250.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..++++|.+.||..+||++|+||||+|+|++|+.+|++++||||++++..|++.|+.+||+|+
T Consensus 146 ~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi 225 (429)
T PLN03013 146 IMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELV 225 (429)
T ss_pred cCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEE
Confidence 58999999999999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++...+.++.+.+++++++.++++|++||+||.|+..||.++++||++|++++||+||+|+|+||+++|+++++|+.+
T Consensus 226 ~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~ 305 (429)
T PLN03013 226 LTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKN 305 (429)
T ss_pred EECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhC
Confidence 99875556678889999988876899999999999977799999999999997789999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||+|||++++.+..+++.++.++|++.+.+|+.++++++|+++.|+|+|+++++++|++++|+++||++|++++++
T Consensus 306 P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAa 385 (429)
T PLN03013 306 PKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAA 385 (429)
T ss_pred CCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHH
Confidence 99999999999998887777777888999988888888889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEE-EEEecCCCCCCcchh-hcH
Q 023227 241 IEIAKRPENAGKLI-VVIFPSFGERYLSSV-LFE 272 (285)
Q Consensus 241 ~~~~~~~~~~~~~v-v~i~~~gG~~~~~~~-~~~ 272 (285)
++++++...++++| |+|.+++|++|.++- +|+
T Consensus 386 lkla~~~~~~g~~IVv~i~~d~g~~Y~~~~~~~~ 419 (429)
T PLN03013 386 IKVAKRPENAGKLIAVSLFASGRDIYTPRCSSLS 419 (429)
T ss_pred HHHhhhccCCCCEEEEEEcCCCchhchhhhhcCC
Confidence 99987655566665 667778999999973 454
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.5e-59 Score=415.15 Aligned_cols=270 Identities=64% Similarity=1.054 Sum_probs=246.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..++++|.+.++ ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+
T Consensus 30 ~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~ 108 (299)
T TIGR01136 30 GRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELI 108 (299)
T ss_pred ccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 47999999999999999999999987776 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++..+++++.+.+++++++.+++++++||+|+.+++.||+++++||++|+++.||+||+|+|+||+++|++.+||+.+
T Consensus 109 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~ 188 (299)
T TIGR01136 109 LTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQN 188 (299)
T ss_pred EeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhC
Confidence 99975457888899999988865688999999999888899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|.+|||+|||.+++++...++..+.+.+++.+..|+.+.++++|+++.|+|+|++++++.|++++|+++||++|++++++
T Consensus 189 ~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~ 268 (299)
T TIGR01136 189 PNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAA 268 (299)
T ss_pred CCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHH
Confidence 99999999999998887666655667777777778788888899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhc
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLF 271 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~ 271 (285)
+++.++...++++||+|+|++|.||+|+..|
T Consensus 269 ~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 269 LKLAKRLENADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred HHHHHhcCCCCCEEEEEECCCCccccCcccC
Confidence 9988765456899999999999999997443
No 7
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.5e-59 Score=415.13 Aligned_cols=269 Identities=66% Similarity=1.068 Sum_probs=244.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.++|++.+| ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.+||+|+
T Consensus 29 ~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~ 107 (298)
T TIGR01139 29 GRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELV 107 (298)
T ss_pred ccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEE
Confidence 47999999999999999999999987776 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCC-eEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++..++.++.+.+++++++.++ +++++||+||.+++.||+++++||++|+++.||+||+|+|+||+++|++.+||+.
T Consensus 108 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~ 187 (298)
T TIGR01139 108 LTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQ 187 (298)
T ss_pred EECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhc
Confidence 999754456778889998888744 5689999999988899999999999999767999999999999999999999999
Q ss_pred CCCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHH
Q 023227 160 NPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 239 (285)
Q Consensus 160 ~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa 239 (285)
+|++|||+|||.+++++...+...+.+++++.+..|..++.+.+|+++.|+|+|++++++.|++++|+++||++|+++++
T Consensus 188 ~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa 267 (298)
T TIGR01139 188 KPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAA 267 (298)
T ss_pred CCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHH
Confidence 99999999999999888766666677788887767777778889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEEecCCCCCCcchhhc
Q 023227 240 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLF 271 (285)
Q Consensus 240 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~ 271 (285)
++++.++.. ++++||+++|++|.||+|+..|
T Consensus 268 ~~~~~~~~~-~~~~vv~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 268 ALKLAKRPE-PDKLIVVILPSTGERYLSTPLF 298 (298)
T ss_pred HHHHHHhcC-CCCEEEEEECCCCccccCcccC
Confidence 999887643 6789999999999999997543
No 8
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.4e-58 Score=407.36 Aligned_cols=261 Identities=47% Similarity=0.780 Sum_probs=232.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.+++++|.+.++ ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.+||+|+
T Consensus 35 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~ 113 (296)
T PRK11761 35 GNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELI 113 (296)
T ss_pred ccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 57999999999999999999999988887 67999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++....++++.+.+++++++. +++|++||+|+.++..||+++++||++|+++.+|+||+|+|+||+++|++++||+.+
T Consensus 114 ~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~ 192 (296)
T PRK11761 114 LVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQN 192 (296)
T ss_pred EeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhC
Confidence 9996446778888888888876 789999999999988899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||+|||.+++.+.+ +.++.....+...+...+|+++.|+|+|+.++++.|++++|+++||++|++++++
T Consensus 193 ~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa 265 (296)
T PRK11761 193 PAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAA 265 (296)
T ss_pred CCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHH
Confidence 999999999998876532 1111122234455577899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhcH
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 272 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~ 272 (285)
+++.++ .++++||+|+||+|.||+++..|+
T Consensus 266 ~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 266 LRIARE--NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred HHHHHH--CCCCeEEEEECCCCcccCChhccc
Confidence 998765 367899999999999999986664
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.2e-58 Score=412.92 Aligned_cols=276 Identities=44% Similarity=0.709 Sum_probs=239.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.+++++|++.++ ++|+++|+||||+|+|++|+++|++|+||||+.+++.|+++++.+||+|+
T Consensus 36 ~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~ 114 (330)
T PRK10717 36 FLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELV 114 (330)
T ss_pred ccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 47999999999999999999999998877 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ChHHHHHHHHHHHHhC-CCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHH
Q 023227 81 LTDPAK------GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAG 153 (285)
Q Consensus 81 ~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~ 153 (285)
.+++.. ..+.+.+.++++.++. .+++|++||+||.++..||.++++||++|++..+|+||+|+|+||+++|++
T Consensus 115 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~ 194 (330)
T PRK10717 115 LVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVS 194 (330)
T ss_pred EeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Confidence 998631 1122344445554443 278999999999986789999999999999767999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCCccC---CCC---CCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCC
Q 023227 154 KFLKEKNPNIKLYGIEPTESPVLS---GGK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 227 (285)
Q Consensus 154 ~~~k~~~~~~~vigv~~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi 227 (285)
+++|+.+|++|||+|||++++... .++ ...+.+++++.+..++.+....+|+++.|+|+|++++++.|++++|+
T Consensus 195 ~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi 274 (330)
T PRK10717 195 RYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGL 274 (330)
T ss_pred HHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCC
Confidence 999999999999999999985432 122 23456788887766666667778999999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhh
Q 023227 228 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 278 (285)
Q Consensus 228 ~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 278 (285)
++||++|++++++++++++. .++++||+|+|++|+||+++.+.|+|+..+
T Consensus 275 ~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~ 324 (330)
T PRK10717 275 CLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFLREK 324 (330)
T ss_pred eEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHHHhc
Confidence 99999999999999987754 467899999999999999998888998865
No 10
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=6.1e-58 Score=414.43 Aligned_cols=276 Identities=34% Similarity=0.538 Sum_probs=237.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.+|.++|.++|+ ..|+++|+||||+++|++|+.+|++|+||||+++++.|++.|+.|||+|+
T Consensus 76 ~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi 154 (423)
T PLN02356 76 FLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVE 154 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEE
Confidence 58999999999999999999999988776 46788999999999999999999999999999999999999999999999
Q ss_pred EeCCC-----CChH-HHH---HHHHHHHHh--------------------------------CCCeEecCCCCCCCchHh
Q 023227 81 LTDPA-----KGMK-GAV---QKAEEILAK--------------------------------TPNAYMLQQFENPANPKI 119 (285)
Q Consensus 81 ~~~~~-----~~~~-~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 119 (285)
.+++. .++. .+. +.+++++++ .++.+|++||+|+.|+..
T Consensus 155 ~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~a 234 (423)
T PLN02356 155 RVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRA 234 (423)
T ss_pred EECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHH
Confidence 99641 1221 111 234444433 147789999999999777
Q ss_pred HHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCccC-------------CCCC----C
Q 023227 120 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------------GGKP----G 182 (285)
Q Consensus 120 g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-------------~~~~----~ 182 (285)
|+..+|+||++|+++++|+||+|+|||||++|+++++|+.+|++||++|||.++..+. .++. .
T Consensus 235 hg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~ 314 (423)
T PLN02356 235 HYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPF 314 (423)
T ss_pred HHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCC
Confidence 7666799999999768999999999999999999999999999999999999886332 1221 2
Q ss_pred CccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCC
Q 023227 183 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFG 262 (285)
Q Consensus 183 ~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG 262 (285)
++.++|++.+..|..++.+.+|+++.|+|+|+++++++|++++|+++||++|++++++++++++. .++++||+|+|++|
T Consensus 315 ~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G 393 (423)
T PLN02356 315 DTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSG 393 (423)
T ss_pred CeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCC
Confidence 46778999887788888889999999999999999999999999999999999999999988653 36889999999999
Q ss_pred CCCcchhhcHHHHHhh
Q 023227 263 ERYLSSVLFESVRKEA 278 (285)
Q Consensus 263 ~~~~~~~~~~~~~~~~ 278 (285)
.||+++++.++|+.++
T Consensus 394 ~kyl~~~~~~~w~~~~ 409 (423)
T PLN02356 394 MRHLSKFHDPQYLSQH 409 (423)
T ss_pred cchhhhhcCHHHHHhc
Confidence 9999998888888764
No 11
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-59 Score=399.96 Aligned_cols=281 Identities=68% Similarity=1.112 Sum_probs=265.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
|+||+||.|||.++.|+.+|..+|.+.||..+|++++|||+|.++|++|+..|++|+++||+..+.+|+..++++|++|+
T Consensus 75 ~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii 154 (362)
T KOG1252|consen 75 YMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEII 154 (362)
T ss_pred ecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHH---HHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHH
Q 023227 81 LTDPAKGMKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLK 157 (285)
Q Consensus 81 ~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k 157 (285)
.++....+.. +...+.++..+.|+.+.++||.||.|+..||.+++.||++|+.+++|.+|.++|||||++|+.+++|
T Consensus 155 ~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylk 234 (362)
T KOG1252|consen 155 LTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLK 234 (362)
T ss_pred ecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHH
Confidence 9997655555 7888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCccCCCCCCC--ccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHH
Q 023227 158 EKNPNIKLYGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 235 (285)
Q Consensus 158 ~~~~~~~vigv~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~ 235 (285)
+.+|+++|++|+|..+..+....+.+ +.++|+|.+..|..++.+.+|+.+.+.++|++.+.++|+.+||++++.|||+
T Consensus 235 e~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGa 314 (362)
T KOG1252|consen 235 EQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGA 314 (362)
T ss_pred HhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchH
Confidence 99999999999999998888777766 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhhhcc
Q 023227 236 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 281 (285)
Q Consensus 236 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 281 (285)
+++++++++++.+..++-+|++++|+|++|+++.+|++|+.....+
T Consensus 315 n~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 315 NVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 9999999999887666666666489999999999999999987765
No 12
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.2e-57 Score=400.61 Aligned_cols=260 Identities=45% Similarity=0.801 Sum_probs=231.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++|++.++ ++||++|+||||+|+|++|+++|++|+||||++++..|++.++.+||+|+
T Consensus 31 ~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~ 109 (290)
T TIGR01138 31 GNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELI 109 (290)
T ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 57999999999999999999999998887 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++..+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|+++++|+||+|+|+||+++|++.++|+.+
T Consensus 110 ~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~ 188 (290)
T TIGR01138 110 LVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQN 188 (290)
T ss_pred EeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhC
Confidence 9987545778888999998887 446899999999977789999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHH
Q 023227 161 PNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 240 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~ 240 (285)
|++|||+|||.+++.+.. +.+++.+..|..+....+|+++.|+|+|+++++++|++++|+++||++|++++++
T Consensus 189 ~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~ 261 (290)
T TIGR01138 189 PPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAA 261 (290)
T ss_pred CCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHH
Confidence 999999999999876431 1223333344455677799999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCEEEEEecCCCCCCcchhhc
Q 023227 241 IEIAKRPENAGKLIVVIFPSFGERYLSSVLF 271 (285)
Q Consensus 241 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~ 271 (285)
++++++. ++++||+|+||+|.||+|+.+|
T Consensus 262 ~~~~~~~--~~~~vv~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 262 LRLAREL--PDAVVVAIICDRGDRYLSTGVF 290 (290)
T ss_pred HHHHHHC--CCCeEEEEECCCCccccCcccC
Confidence 9987753 5689999999999999998544
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=7.1e-57 Score=396.94 Aligned_cols=265 Identities=61% Similarity=1.004 Sum_probs=238.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..+.++|+++++ ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+
T Consensus 25 ~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~ 103 (291)
T cd01561 25 FFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVI 103 (291)
T ss_pred ccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 47999999999999999999999987665 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC--ChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHh
Q 023227 81 LTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 81 ~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
.++... +.+++.+.+++++++.++++|++||+||.++..+++++++||++|++..||+||+|+|+||+++|++.+||+
T Consensus 104 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~ 183 (291)
T cd01561 104 LTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKE 183 (291)
T ss_pred EeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 999742 336788888888887667999999999998444445999999999976799999999999999999999999
Q ss_pred hCCCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHH
Q 023227 159 KNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 238 (285)
Q Consensus 159 ~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~a 238 (285)
..|.++||+|||++++++.......+.+++++.+..++.+...++|+++.|+|+|++++++.|++++|+++||++|++++
T Consensus 184 ~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a 263 (291)
T cd01561 184 KNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVA 263 (291)
T ss_pred hCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHH
Confidence 99999999999999988854444566778888876677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEEEEecCCCCCCcc
Q 023227 239 AAIEIAKRPENAGKLIVVIFPSFGERYLS 267 (285)
Q Consensus 239 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 267 (285)
++++++++.. ++++||+|+|++|.||+|
T Consensus 264 ~~~~~~~~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 264 AALKLAKRLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHhcC-CCCeEEEEECCCccccCC
Confidence 9999887653 778999999999999986
No 14
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=9.9e-57 Score=419.18 Aligned_cols=276 Identities=42% Similarity=0.704 Sum_probs=242.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++|++.+| ++|+++|+||||+|+|++|+++|++|++|||+++++.|+..++.+||+|+
T Consensus 34 ~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~ 112 (454)
T TIGR01137 34 FFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIV 112 (454)
T ss_pred hcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEE
Confidence 47999999999999999999999998887 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChH---HHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHH
Q 023227 81 LTDPAKGMK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLK 157 (285)
Q Consensus 81 ~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k 157 (285)
.++....++ ...+.+++++++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.++|
T Consensus 113 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~ 192 (454)
T TIGR01137 113 RTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLK 192 (454)
T ss_pred EcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHH
Confidence 998632232 23566777877755678899999999977899999999999997679999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCccCCCC------CCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeeh
Q 023227 158 EKNPNIKLYGIEPTESPVLSGGK------PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 231 (285)
Q Consensus 158 ~~~~~~~vigv~~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p 231 (285)
+..|++|||+|||++++.. .++ ...+.+++++.+..|+.++.+++|+++.|+|+|++++++.|++++|+++||
T Consensus 193 ~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ 271 (454)
T TIGR01137 193 ESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGG 271 (454)
T ss_pred hhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcH
Confidence 9999999999999998633 221 113456778766667777788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhh
Q 023227 232 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 278 (285)
Q Consensus 232 ~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 278 (285)
+||++++++++++++...++++||+++|++|.||+++.++++|+...
T Consensus 272 ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~ 318 (454)
T TIGR01137 272 SSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDN 318 (454)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhc
Confidence 99999999999887422467899999999999999998898998764
No 15
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-57 Score=393.98 Aligned_cols=266 Identities=24% Similarity=0.325 Sum_probs=235.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.+||+||||.||++|.++.+.+++.. ..+||++|+||||+++|++|+++|++++||||.++|..|++.+|.||++|+
T Consensus 48 ~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVi 124 (347)
T COG1171 48 NLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVI 124 (347)
T ss_pred cCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEE
Confidence 37999999999999999987644321 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
+++. +|+++.+.+++++++. ++.|++||++|+. ++||+|+++||++|++..||+||||+|+||+++|++.++|...
T Consensus 125 l~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~ 200 (347)
T COG1171 125 LHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALS 200 (347)
T ss_pred EECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhC
Confidence 9996 7899999999999998 8999999999998 9999999999999996557999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC------CCccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCC
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 227 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~------~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi 227 (285)
|++|||||||++++++. .|+. ..+.++|+++.. .++.++++++|+++.|+|+|+.++|+.+++.+++
T Consensus 201 p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~i 280 (347)
T COG1171 201 PEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKI 280 (347)
T ss_pred CCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCe
Confidence 99999999999999764 3422 234567777543 5778889999999999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 228 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 228 ~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
++||++|++++++++...+. .+++++++|+ +|||.+++ .|.+.+..
T Consensus 281 I~EpaGAlalAal~~~~~~~-~~g~~v~~il-SGgN~d~~--~~~~v~~~ 326 (347)
T COG1171 281 IAEPAGALALAALLAGKIEP-LQGKTVVVIL-SGGNIDFE--RLAEVLER 326 (347)
T ss_pred eccccHHHHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHH--HHHHHHhc
Confidence 99999999999999887664 5778888888 99995554 46665544
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.7e-55 Score=407.00 Aligned_cols=266 Identities=25% Similarity=0.314 Sum_probs=231.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|+.+|++|+||||+++|..|+..++.|||+|+
T Consensus 60 ~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVi 135 (521)
T PRK12483 60 DLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVV 135 (521)
T ss_pred CCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence 5799999999999999988764332 156999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|+++.||+||+|+|+||+++|++.++|..+
T Consensus 136 l~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~ 211 (521)
T PRK12483 136 LHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVR 211 (521)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhC
Confidence 9985 6889999999998887 7899999999998 8999999999999996569999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++. .+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|++
T Consensus 212 p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~ 291 (521)
T PRK12483 212 PEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSI 291 (521)
T ss_pred CCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcE
Confidence 99999999999998764 23332 24456666433 24555688999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++|+++|+++++.++...++++||+|+ ||||.+++ .+.+++..
T Consensus 292 vEpagAaalAal~~~~~~~~~~g~~VV~Il-sGgNid~~--~l~~i~~r 337 (521)
T PRK12483 292 TEPAGALAVAGIKKYAEREGIEGQTLVAID-SGANVNFD--RLRHVAER 337 (521)
T ss_pred EeHHHHHHHHHHHHHHHhcCCCCCEEEEEe-CCCCCCHH--HHHHHHHH
Confidence 999999999999998776555788999998 99996555 46665554
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=4.1e-54 Score=402.75 Aligned_cols=264 Identities=22% Similarity=0.272 Sum_probs=229.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+.+..+.++.. . ++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+
T Consensus 132 ~lqptGSFK~RGA~n~I~~L~~e~~-~---~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVv 207 (591)
T PLN02550 132 DLQPVFSFKLRGAYNMMAKLPKEQL-D---KGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVV 207 (591)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcC-C---CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999998754322 2 56999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+|+||++|+++.+|+||+|+|+||+++|++.++|..+
T Consensus 208 l~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~ 283 (591)
T PLN02550 208 LVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVR 283 (591)
T ss_pred EeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhC
Confidence 9985 6889999999998886 7899999999998 8999999999999996569999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++. .+.++|+.... .++.++.+++|+++.|+|+|+.++++.+++++|++
T Consensus 284 p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~giv 363 (591)
T PLN02550 284 PEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSI 363 (591)
T ss_pred CCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCE
Confidence 99999999999998764 34432 23456665432 23445688999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHH
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 275 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 275 (285)
+||++|+++|+++++.++...++++||+|+ ||||.+++ .+.+..
T Consensus 364 vEpAGA~alAall~~~~~~~~~g~~Vv~vl-sGgNid~~--~l~~v~ 407 (591)
T PLN02550 364 LEPAGALALAGAEAYCKYYGLKDENVVAIT-SGANMNFD--RLRIVT 407 (591)
T ss_pred EeHHHHHHHHHHHHHHHhcCCCCCeEEEEe-cCCCCCHH--HHHHHH
Confidence 999999999999998775556888999999 89996655 345443
No 18
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=3.6e-54 Score=392.74 Aligned_cols=264 Identities=23% Similarity=0.298 Sum_probs=226.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+.+..+.+.+. .++||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+
T Consensus 43 ~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv 118 (403)
T PRK08526 43 NLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVI 118 (403)
T ss_pred CCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEE
Confidence 5799999999999999998876544 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.++|..+
T Consensus 119 ~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~ 193 (403)
T PRK08526 119 LKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQIN 193 (403)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhC
Confidence 9985 6889999999998886 7899999999987 8999999999999994 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC-----CCccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++ ..+.++|++... .++....+++|+++.|+|+|+.++++.|++++|++
T Consensus 194 p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ 273 (403)
T PRK08526 194 PNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIV 273 (403)
T ss_pred CCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcE
Confidence 99999999999998763 2332 234556766532 12233468899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++|++++++++..... .++++||+|+ ||||.+++ .+.+++..
T Consensus 274 ve~aga~~lAall~~~~~~-~~~~~Vv~il-sGGnid~~--~~~~i~~~ 318 (403)
T PRK08526 274 VEGAGAASVAALLHQKIDL-KKGKKIGVVL-SGGNIDVQ--MLNIIIEK 318 (403)
T ss_pred eeHHHHHHHHHHHhCcccc-ccCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999999999998532211 3678999999 89996655 46666554
No 19
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=8.6e-54 Score=380.18 Aligned_cols=270 Identities=20% Similarity=0.218 Sum_probs=226.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+
T Consensus 24 ~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~ 101 (316)
T cd06448 24 NLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVV 101 (316)
T ss_pred cCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999999999885 22 268999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC--CCCEEEEccCCcccHHHHHHHHHh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~--~~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
.++.. .++++.+.+++++++.++++|++||+||.+ +.||.++++||++|+++ .||+||+|+|+||+++|++++||+
T Consensus 102 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~ 179 (316)
T cd06448 102 VHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLER 179 (316)
T ss_pred EECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHh
Confidence 99863 256667777888777557899999999998 78999999999999975 599999999999999999999999
Q ss_pred hC-CCcEEEEEecCCCCccC----CCCC-----CCccccccCCCCCcc---CcccccCCeEEEeCHHHHHHHHHHHHHhc
Q 023227 159 KN-PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKE 225 (285)
Q Consensus 159 ~~-~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~d~~~~v~d~e~~~a~~~l~~~~ 225 (285)
.+ |+++||+|||++++++. .+++ ..+.+++++.+..+. ...++..|+++.|+|+|+++++++|++++
T Consensus 180 ~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~ 259 (316)
T cd06448 180 NGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDE 259 (316)
T ss_pred cCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHc
Confidence 96 99999999999997663 2332 134556787665443 33456789999999999999999999999
Q ss_pred CCeeehhHHHHHHHHHHHH-----hcCC-CCCCEEEEEecCCCCCCcchhhcHHHHH
Q 023227 226 GLFVGISSGGAAAAAIEIA-----KRPE-NAGKLIVVIFPSFGERYLSSVLFESVRK 276 (285)
Q Consensus 226 gi~~~p~~g~a~aa~~~~~-----~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 276 (285)
||++||++|++++++++.. +++. .++++||+|+ ||||. +|..-|.++..
T Consensus 260 gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~-~~~~~~~~~~~ 314 (316)
T cd06448 260 RILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSN-ITLEQLKEYKK 314 (316)
T ss_pred CceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCC-CCHHHHHHHHH
Confidence 9999999999999998532 2222 4788999999 77774 14334665543
No 20
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=7.2e-54 Score=381.77 Aligned_cols=255 Identities=22% Similarity=0.252 Sum_probs=222.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..+.++|.. +.||++|+||||+|+|++|+.+|++|+||||++++..|++.++.|||+|+
T Consensus 56 ~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv 131 (349)
T PRK08813 56 NLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVR 131 (349)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 57999999999999999999998872 46999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +|+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|. ||+||+|+|+||+++|++.++|+
T Consensus 132 ~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~-- 202 (349)
T PRK08813 132 QHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS-- 202 (349)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--
Confidence 9985 6889999999999886 8999999999998 899999999999873 89999999999999999999996
Q ss_pred CCcEEEEEecCCCCccC---CCCC-----CCccccccCCC---CCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCee
Q 023227 161 PNIKLYGIEPTESPVLS---GGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 229 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~---~~~~-----~~~~~~gl~~~---~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~ 229 (285)
+.+|||||||++++++. .++. ..+.+++++.. ..++.+..+++|+++.|+|+|+.++++.|++++|+++
T Consensus 203 ~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~v 282 (349)
T PRK08813 203 QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIA 282 (349)
T ss_pred CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEE
Confidence 56999999999997642 1221 23556777643 2345556788999999999999999999999999999
Q ss_pred ehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 230 GISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 230 ~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
||++|+++++++++ ++++|++|+ ||||.+++ .+.+++..
T Consensus 283 E~aga~alAa~~~~------~~~~v~~vl-sGgN~d~~--~~~~~~~~ 321 (349)
T PRK08813 283 EGAGALALAAGRRV------SGKRKCAVV-SGGNIDAT--VLATLLSE 321 (349)
T ss_pred EEcHHHHHHHHHHh------CCCCEEEEE-CCCCCCHH--HHHHHHHh
Confidence 99999999998763 467888888 89996554 56776653
No 21
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=9.5e-54 Score=398.57 Aligned_cols=266 Identities=24% Similarity=0.314 Sum_probs=230.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..+.++.. .++||++|+||||+++|++|+++|++|+||||+++|..|++.++.+||+|+
T Consensus 40 ~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vv 115 (499)
T TIGR01124 40 DLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVV 115 (499)
T ss_pred CCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 4799999999999999988643322 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+|.||++|++..+|+||+|+|+|||++|++.++|..+
T Consensus 116 l~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~ 191 (499)
T TIGR01124 116 LHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLM 191 (499)
T ss_pred EeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhC
Confidence 9985 6889999999998886 7899999999998 8999999999999996579999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC-----CCccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++ ..+.++|++... .++.++++++|+++.|+|+|+.++++.|++++|++
T Consensus 192 p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii 271 (499)
T TIGR01124 192 PEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAV 271 (499)
T ss_pred CCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcE
Confidence 99999999999998764 2333 123456665433 24556678999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++|+++|+++++.++...++++||+|+ +|||.+++. ++.+++.
T Consensus 272 ~EpagA~~lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~~--l~~~~~r 317 (499)
T TIGR01124 272 AEPAGALALAGLKKYVALHGIRGQTLVAIL-SGANMNFHR--LRYVSER 317 (499)
T ss_pred EechHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHHH--HHHHHHH
Confidence 999999999999998876655788999999 899965553 5555444
No 22
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5.1e-54 Score=391.87 Aligned_cols=263 Identities=22% Similarity=0.317 Sum_probs=228.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++++. ++||++|+||||+++|++|+++|++|+||||+.++..|++.++.+||+|+
T Consensus 23 ~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 98 (380)
T TIGR01127 23 NLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVI 98 (380)
T ss_pred CCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEE
Confidence 57999999999999999999888762 47999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ .||+||+|+|+||+++|++.++|...
T Consensus 99 ~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~ 173 (380)
T TIGR01127 99 LHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDTVIVPVGGGGLISGVASAAKQIN 173 (380)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCEEEEEeChHHHHHHHHHHHHHhC
Confidence 9985 6889999999998886 7899999999998 7999999999999995 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++. .+.++|++... .++.+..+++|+++.|+|+|+.+++++|++++|++
T Consensus 174 p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ 253 (380)
T TIGR01127 174 PNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKIL 253 (380)
T ss_pred CCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeE
Confidence 99999999999998763 34332 34456665432 23345578899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++|++++++++.... .++++||+++ +||+.+. .+|.+++..
T Consensus 254 ~e~s~a~~laa~~~~~~~--~~~~~vv~i~-sGGn~d~--d~l~~vi~~ 297 (380)
T TIGR01127 254 AEGAGAAGVAALLEQKVD--VKGKKIAVVL-SGGNIDL--NLLNKIIEK 297 (380)
T ss_pred echHHHHHHHHHHhCccc--cCCCeEEEEe-CCCCCCH--HHHHHHHHH
Confidence 999999999999874322 4678999999 7899554 467766554
No 23
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=9.9e-54 Score=391.92 Aligned_cols=255 Identities=24% Similarity=0.307 Sum_probs=221.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..+.+.+. .++||++|+||||+|+|++|+.+|++|+||||++++..|++.++.|||+|+
T Consensus 48 ~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv 123 (406)
T PRK06382 48 NFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVI 123 (406)
T ss_pred CCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEE
Confidence 5799999999999999998776553 246999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ .||+||+|+|+||+++|+++++|..+
T Consensus 124 ~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~ 198 (406)
T PRK06382 124 LTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHIN 198 (406)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhC
Confidence 9986 5788999999998886 7899999999988 8899999999999994 79999999999999999999999999
Q ss_pred CCcEEEEEecCCCCcc----CCCCC-----CCccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVL----SGGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~----~~~~~-----~~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++ ..+++ ..+.++|++.+. .++.+..+++|+++.|+|+|+.++++.|++++|++
T Consensus 199 p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~ 278 (406)
T PRK06382 199 PNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIV 278 (406)
T ss_pred CCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCce
Confidence 9999999999999875 23333 234567776643 23345578899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcc
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 267 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 267 (285)
+||++|+++++++... ...++++||+|+ +||+.+++
T Consensus 279 ~epsga~~laal~~~~--~~~~~~~Vv~i~-sGGn~d~~ 314 (406)
T PRK06382 279 AEPSGAVGLAAIMEGK--VDVKGKKVAIVV-SGGNINPL 314 (406)
T ss_pred echHHHHHHHHHHhcc--ccCCCCEEEEEe-CCCCCCHH
Confidence 9999999999775432 123678899999 89996544
No 24
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.6e-53 Score=380.74 Aligned_cols=255 Identities=20% Similarity=0.237 Sum_probs=223.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.+.|. ++||++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+
T Consensus 80 ~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~ 154 (347)
T PRK08329 80 YLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELH 154 (347)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEE
Confidence 5799999999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++ +++++.+.+++++++. +++|++++.||.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++||++.
T Consensus 155 ~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~ 229 (347)
T PRK08329 155 FVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELH 229 (347)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9986 4567778888888875 7788899999988 8899999999999996 79999999999999999999999974
Q ss_pred ------CCcEEEEEecCCCCccCC-CCCCCccccccCCCCCcc-----CcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 ------PNIKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ------~~~~vigv~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
+.+|||+|||+++.++.. .+...+.+++++.+..+. .+.+++.+.++.|+|+|++++++.|++ +||+
T Consensus 230 ~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~ 308 (347)
T PRK08329 230 EMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFL 308 (347)
T ss_pred hcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCce
Confidence 568999999999876643 223445667777654332 233566778999999999999999986 7999
Q ss_pred eehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCc
Q 023227 229 VGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 266 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 266 (285)
+||++|+++|+++++.+++. .++++||+++|.+|.|++
T Consensus 309 vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 309 VEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred ECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 99999999999999998876 478899999988888875
No 25
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.5e-53 Score=396.28 Aligned_cols=266 Identities=23% Similarity=0.311 Sum_probs=230.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|+|.+++..+.+... .++||++|+||||+++|++|+++|++|+||||+++|..|++.++.+||+|+
T Consensus 43 ~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi 118 (504)
T PRK09224 43 DLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVV 118 (504)
T ss_pred CCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 4799999999999999988653322 267999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|++.||++|++..||+||+|+|||||++|++.++|...
T Consensus 119 ~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~ 194 (504)
T PRK09224 119 LHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLR 194 (504)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhC
Confidence 9985 6889999999998885 8899999999998 8999999999999996569999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||++++++. .+++. .+.+++++... .++.+.++++|+++.|+|+|+.++++.|++++|++
T Consensus 195 p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~ 274 (504)
T PRK09224 195 PEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSI 274 (504)
T ss_pred CCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeE
Confidence 99999999999998764 33332 22346665432 23455688999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++|+++|+++++.++...++++||+|+ ||||.+.+ .++++++.
T Consensus 275 ~epagA~~lAal~~~~~~~~~~g~~vv~i~-sG~n~~~~--~l~~~~~r 320 (504)
T PRK09224 275 AEPAGALALAGLKKYVAQHGIEGETLVAIL-SGANMNFD--RLRYVAER 320 (504)
T ss_pred EcHHHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 999999999999998876655688999999 88995554 46666554
No 26
>PLN02970 serine racemase
Probab=100.00 E-value=2.6e-53 Score=379.16 Aligned_cols=258 Identities=20% Similarity=0.231 Sum_probs=219.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+
T Consensus 50 ~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi 125 (328)
T PLN02970 50 CFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIIT 125 (328)
T ss_pred CCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence 5899999999999999999875554 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++.+.+.+++++++ ++++|++||+||.+ +.||+|+++||++|++ .||+||+|+|+||+++|++++||+.+
T Consensus 126 ~~~~--~~~~~~~~a~~la~~-~g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~ 200 (328)
T PLN02970 126 WCEP--TVESREAVAARVQQE-TGAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIK 200 (328)
T ss_pred EeCC--CHHHHHHHHHHHHHh-cCCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcC
Confidence 9996 577788888888877 48999999999987 7899999999999995 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC-----CCccccccCCCC--CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCee
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 229 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~ 229 (285)
|++|||+|||.+++++. .+++ ..+..++++.+. .++...++.+|+++.|+|+|+++++++|++++|+++
T Consensus 201 ~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~v 280 (328)
T PLN02970 201 PSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVV 280 (328)
T ss_pred CCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEE
Confidence 99999999999997653 2322 123445555431 123344678999999999999999999999999999
Q ss_pred ehhHHHHHHHHHHHHhc-CC-CC-CCEEEEEecCCCCCCcch
Q 023227 230 GISSGGAAAAAIEIAKR-PE-NA-GKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 230 ~p~~g~a~aa~~~~~~~-~~-~~-~~~vv~i~~~gG~~~~~~ 268 (285)
||++|++++++++...+ +. .+ +++||+++ ||||.+++.
T Consensus 281 e~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~ 321 (328)
T PLN02970 281 EPSGAIGLAAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLGV 321 (328)
T ss_pred eHHHHHHHHHHHhCcccccccccCCCeEEEEE-CCCCCCHHH
Confidence 99999999998764332 22 23 47888888 889966543
No 27
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-53 Score=378.29 Aligned_cols=265 Identities=23% Similarity=0.311 Sum_probs=223.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.+... .++|+++|+||||+|+|++|+.+|++|+||||++.++.|+..++.+||+|+
T Consensus 50 ~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 125 (333)
T PRK08638 50 NMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVV 125 (333)
T ss_pred cCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEE
Confidence 5799999999999999998765332 157999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++ +++++.+.+++++++. +++|++||+||.+ +.||+++++||++|+ +++|+||+|+|+||+++|++.+||+.+
T Consensus 126 ~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~ 200 (333)
T PRK08638 126 LHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSIN 200 (333)
T ss_pred EECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhC
Confidence 9985 6788888999998886 7899999999998 799999999999999 469999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCCCc-----cccccCCCCCccCcc----cccCCeEEEeCHHHHHHHHHHHHHhcCC
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPGPH-----KIQGIGAGFVPGVLE----VNIIDEVVQVSSDEAIETAKLLALKEGL 227 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~~~-----~~~gl~~~~~~~~~~----~~~~d~~~~v~d~e~~~a~~~l~~~~gi 227 (285)
|++|||+|||++++++. .+++... ..++++.. .|..+. ++++|+++.|+|+|+++++++|++++|+
T Consensus 201 ~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi 279 (333)
T PRK08638 201 PTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKV 279 (333)
T ss_pred CCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCC
Confidence 99999999999987543 3443322 23344332 233332 5789999999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhh
Q 023227 228 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 278 (285)
Q Consensus 228 ~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 278 (285)
++||++|.+++++.....+...++++||+|+ +|||.|++. |++|+...
T Consensus 280 ~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~--~~~~~~~~ 327 (333)
T PRK08638 280 VTEGAGALATAALLSGKLDQYIQNKKVVAII-SGGNVDLSR--VSQITGHV 327 (333)
T ss_pred eechhHHHHHHHHHhCCcccccCCCcEEEEE-CCCCCCHHH--HHHHHHHH
Confidence 9999998888887653222224678899999 799987774 77776543
No 28
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.8e-53 Score=388.46 Aligned_cols=264 Identities=22% Similarity=0.302 Sum_probs=224.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL- 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v- 79 (285)
++|||||||+|++.+++..+.+... .++||++|+||||+++|++|+++|++|+||||+.++..|+..++.|||++
T Consensus 39 ~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv 114 (409)
T TIGR02079 39 DLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFI 114 (409)
T ss_pred CCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCee
Confidence 5799999999999999987533222 15799999999999999999999999999999999999999999999974
Q ss_pred --EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHH
Q 023227 80 --VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLK 157 (285)
Q Consensus 80 --~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k 157 (285)
+.++ .+++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++..||+||+|+|+||+++|++.++|
T Consensus 115 ~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k 190 (409)
T TIGR02079 115 EIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLA 190 (409)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHH
Confidence 3444 36889999999998886 7899999999988 8899999999999997669999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCccC----CCCCC-----CccccccCCCCCc---cCcccccCCeEEEeCHHHHHHHHHHHHHhc
Q 023227 158 EKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKE 225 (285)
Q Consensus 158 ~~~~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~ 225 (285)
+.+|++|||||||++++++. .+++. .+.++|++....+ +.+..+++|+++.|+|+|+.++++.|++++
T Consensus 191 ~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~ 270 (409)
T TIGR02079 191 GTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLE 270 (409)
T ss_pred HhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhc
Confidence 99999999999999998764 24431 3445677654432 234578899999999999999999999999
Q ss_pred CCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 226 GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 226 gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
|+++||++|+++|+++++.++ .++++||+|+ +|||.+++ .+.+++..
T Consensus 271 gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~--~~~~~~~~ 317 (409)
T TIGR02079 271 GIVAEPAGALSIAALERLGEE--IKGKTVVCVV-SGGNNDIE--RTEEIRER 317 (409)
T ss_pred CceecchHHHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 999999999999999987543 4688999999 89996554 46666554
No 29
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-53 Score=378.14 Aligned_cols=261 Identities=21% Similarity=0.282 Sum_probs=221.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|++|||+++++.|+..++.+||+|+
T Consensus 47 ~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~ 122 (321)
T PRK07048 47 NFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVV 122 (321)
T ss_pred cCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence 5799999999999999998775433 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. .++++.+.+++++++. +++|++||+|+.+ +.||+++++||++|++ .||+||+|+|+||+++|++.++|+.+
T Consensus 123 ~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~ 197 (321)
T PRK07048 123 TYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALS 197 (321)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhC
Confidence 9996 4667788888888886 7899999999988 8999999999999995 79999999999999999999999999
Q ss_pred CCcEEEEEecCCCCcc----CCCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVL----SGGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~----~~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|+++||+|||++++++ ..++.. .+.++++.... ..+....+++|+++.|+|+|+++++++|++++|++
T Consensus 198 ~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ 277 (321)
T PRK07048 198 PGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIV 277 (321)
T ss_pred CCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCce
Confidence 9999999999998754 233321 12234433211 12233467899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHH
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 275 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 275 (285)
+||++|+++++++++.++ .++++||+|+ |||+.+++ -|.+++
T Consensus 278 ~eps~a~~laa~~~~~~~--~~~~~vv~i~-tGGn~~~~--~~~~~~ 319 (321)
T PRK07048 278 VEPTGCLGAAAALRGKVP--LKGKRVGVII-SGGNVDLA--RFAALL 319 (321)
T ss_pred eccHHHHHHHHHHhCchh--cCCCeEEEEe-CCCCCCHH--HHHHHh
Confidence 999999999999987654 3678999999 78997665 355544
No 30
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.9e-53 Score=381.67 Aligned_cols=259 Identities=22% Similarity=0.294 Sum_probs=219.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+.+|++|+||||++ .+..|+.+++.+||+|
T Consensus 51 ~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V 125 (351)
T PRK06352 51 GLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADI 125 (351)
T ss_pred CCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEE
Confidence 4799999999999999999999886 689999999999999999999999999999997 5899999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhh
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
+.++. +++++.+.+++++++. ++++++ +.||.+ +.||.++++||++|++..||+||+|+|+||+++|++++||++
T Consensus 126 ~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~ 200 (351)
T PRK06352 126 ISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEW 200 (351)
T ss_pred EEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHH
Confidence 99996 5778888899988875 666665 458888 789999999999999767999999999999999999999999
Q ss_pred CCC-----cEEEEEecCCCCccCCCCCCC---ccccccCCCC-CccCcccccCC----eEEEeCHHHHHHHHHHHHHhcC
Q 023227 160 NPN-----IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLEVNIID----EVVQVSSDEAIETAKLLALKEG 226 (285)
Q Consensus 160 ~~~-----~~vigv~~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~~d----~~~~v~d~e~~~a~~~l~~~~g 226 (285)
+|+ +|||+|||++++++..+++.. +..+++..+. ..+....+.+| .++.|+|+|++++++.|++++|
T Consensus 201 ~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eG 280 (351)
T PRK06352 201 NEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDG 280 (351)
T ss_pred HhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcC
Confidence 877 899999999998776555431 2223433322 11122223333 4899999999999999999999
Q ss_pred CeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcchh
Q 023227 227 LFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 227 i~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 269 (285)
|++||++|+++++++++.+++. .++++||+++|++|+||+++.
T Consensus 281 i~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 281 VFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred ceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 9999999999999999887543 467899999988899999875
No 31
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=3.4e-53 Score=377.86 Aligned_cols=264 Identities=20% Similarity=0.280 Sum_probs=224.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++|+ .++||++|+||||+|+|++|+++|++|+||||+++++.|+..++.+||+|+
T Consensus 42 ~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~ 117 (322)
T PRK07476 42 TLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVR 117 (322)
T ss_pred cCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999999998887 245999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++|++||.+ +.||+++++||++|++ ++|+||+|+|+||+++|++.+||...
T Consensus 118 ~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~ 192 (322)
T PRK07476 118 IVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIR 192 (322)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhC
Confidence 9986 5778888899988886 7899999999998 7899999999999995 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC-----CCccccccCCCC-----CccCcccccCCeEEEeCHHHHHHHHHHHHHhcC
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGF-----VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 226 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~-----~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~g 226 (285)
|++|||+|||++++++. .+++ ..+..++++.+. .+.....+.+|+++.|+|+|++++++.|++++|
T Consensus 193 ~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~g 272 (322)
T PRK07476 193 PAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREER 272 (322)
T ss_pred CCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcC
Confidence 99999999999887543 2322 123344443221 234455678999999999999999999999999
Q ss_pred CeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHhh
Q 023227 227 LFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 278 (285)
Q Consensus 227 i~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 278 (285)
+++||+++++++++++. .....+++||+++ |||+. |...|++++.+.
T Consensus 273 i~ve~a~a~~laal~~~--~~~~~~~~Vvvi~-tGg~~--~~~~~~~~~~~~ 319 (322)
T PRK07476 273 LVVEGAGAVGIAALLAG--KIAARDGPIVVVV-SGANI--DMELHRRIINGE 319 (322)
T ss_pred ceEeChhHHHHHHHHhC--CcccCCCcEEEEE-CCCCC--CHHHHHHHHhhh
Confidence 99999999999999842 1223347899998 88994 444688877653
No 32
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=5.3e-53 Score=388.46 Aligned_cols=266 Identities=24% Similarity=0.331 Sum_probs=225.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++..+.+... .++||++|+||||+++|++|+++|++|+||||++++..|+..++.|||+|+
T Consensus 48 ~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv 123 (420)
T PRK08639 48 DLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFV 123 (420)
T ss_pred CCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCee
Confidence 5799999999999999988432211 257999999999999999999999999999999999999999999999754
Q ss_pred EeC-CCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCC--CCEEEEccCCcccHHHHHHHHH
Q 023227 81 LTD-PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLK 157 (285)
Q Consensus 81 ~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~--~d~iv~~vG~Gg~~aGi~~~~k 157 (285)
.+. ...+++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|+++. ||+||+|+|+||+++|++.++|
T Consensus 124 ~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k 201 (420)
T PRK08639 124 EIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLK 201 (420)
T ss_pred EEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHH
Confidence 321 1246889999999998886 7999999999988 899999999999999755 9999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCccC----CCCC-----CCccccccCCCCC---ccCcccccCCeEEEeCHHHHHHHHHHHHHhc
Q 023227 158 EKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKE 225 (285)
Q Consensus 158 ~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~ 225 (285)
+.+|++|||||||++++++. .+++ ..+.++|++.... ++.+..+++|+++.|+|+|+.++++.|++++
T Consensus 202 ~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~ 281 (420)
T PRK08639 202 ERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKE 281 (420)
T ss_pred HhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhc
Confidence 99999999999999998764 2332 2345677765432 3345578899999999999999999999999
Q ss_pred CCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 226 GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 226 gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
|+++||++|+++|+++++.+. .++++||+|+ |||+.+++ .+.+++..
T Consensus 282 gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~--~~~~~~~~ 328 (420)
T PRK08639 282 GIVAEPAGALSIAALELYKDE--IKGKTVVCVI-SGGNNDIE--RMPEIKER 328 (420)
T ss_pred CceecchHHHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHH--HHHHHHHH
Confidence 999999999999999886543 4788999999 89996655 46666554
No 33
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=9.1e-53 Score=386.35 Aligned_cols=262 Identities=25% Similarity=0.360 Sum_probs=226.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.+++. .++||++|+||||+++|++|+.+|++|+||||++++..|++.++.|||+|+
T Consensus 45 ~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi 120 (404)
T PRK08198 45 NLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVV 120 (404)
T ss_pred CCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 5799999999999999999875554 368999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ ++|+||+|+|+||+++|++.++|+.+
T Consensus 121 ~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~ 195 (404)
T PRK08198 121 LHGD--VYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDLP-DVDTVVVPIGGGGLISGVATAVKALR 195 (404)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhCC-CCCEEEEEeCHhHHHHHHHHHHHHhC
Confidence 9985 6889999999998886 8999999999988 7999999999999994 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||||||.+++++. .+++. .+..++++... .++.+.++++|+++.|+|+|+.++++.|++++|++
T Consensus 196 p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~ 275 (404)
T PRK08198 196 PEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLV 275 (404)
T ss_pred CCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeE
Confidence 99999999999998763 23332 23345554322 23445678999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHH
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 276 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 276 (285)
+||++|+++|+++++.+. .++++||+++ +||+.+.+. +.+++.
T Consensus 276 ~e~sga~~lAal~~~~~~--~~~~~vv~vl-~ggn~~~~~--l~~ii~ 318 (404)
T PRK08198 276 VEGAGAVSVAALLSGKLD--VKGKKVVAVL-SGGNIDVLL--LSRVIE 318 (404)
T ss_pred EehHHHHHHHHHHhchhh--cCCCeEEEEE-CCCCCCHHH--HHHHHH
Confidence 999999999999986532 4678999999 789976553 444443
No 34
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.7e-52 Score=382.63 Aligned_cols=259 Identities=25% Similarity=0.242 Sum_probs=223.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.+|.++|. ++|+++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+
T Consensus 103 ~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi 177 (394)
T PRK08197 103 GLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELY 177 (394)
T ss_pred CCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999999999887 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCC-CCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~-~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++ +++++.+.+++++++. ++|+++++.||.+ +.|++|+++||++|++++ ||+||+|+|+||+++|++++||++
T Consensus 178 ~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~ 253 (394)
T PRK08197 178 LVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDEL 253 (394)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHH
Confidence 9996 5778888888888876 7999999999998 899999999999999754 999999999999999999999997
Q ss_pred -------CCCcEEEEEecCCCCccC----CCCCC-------CccccccCCCCCcc-----CcccccCCeEEEeCHHHHHH
Q 023227 160 -------NPNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIE 216 (285)
Q Consensus 160 -------~~~~~vigv~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~-----~~~~~~~d~~~~v~d~e~~~ 216 (285)
.+.+|||+|||++++++. .+... .+..+++..+.... ...+++.+..+.|+|+|+++
T Consensus 254 ~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~ 333 (394)
T PRK08197 254 EALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILA 333 (394)
T ss_pred HHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHH
Confidence 388999999999997663 22211 12234443322111 11235677899999999999
Q ss_pred HHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcch
Q 023227 217 TAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 217 a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 268 (285)
++++|++++||++||++|+++++++++.+++. .++++||+++|++|.||+++
T Consensus 334 a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 334 AQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred HHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 99999999999999999999999999988765 46789999999999999875
No 35
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.7e-52 Score=382.27 Aligned_cols=272 Identities=21% Similarity=0.250 Sum_probs=226.1
Q ss_pred CCCC-CCCchhHHHHHHHHH-----HHHcCCCCCCC----------------eEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 023227 1 MMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLII 58 (285)
Q Consensus 1 ~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i 58 (285)
++|| |||||+|++.+++.. ++++|.+.|+. ++||++|+||||+++|++|+.+|++|+|
T Consensus 106 ~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tI 185 (441)
T PRK02991 106 SHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTV 185 (441)
T ss_pred CCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 4799 999999999999875 56778776653 4799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC----
Q 023227 59 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---- 134 (285)
Q Consensus 59 v~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~---- 134 (285)
|||+++++.|++.++.|||+|+.++. +|+++.+.+++++++.++++|++++++|.. +.||+|+++||++|+++
T Consensus 186 vvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~ 262 (441)
T PRK02991 186 HMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIV 262 (441)
T ss_pred EECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCc
Confidence 99999999999999999999999996 688899999999888766899999977776 89999999999999952
Q ss_pred ----CCCEEEEccCCcccHHHHHHHHHhh-CCCcEEEEEecCCCCccC----CCCC-----------CCccccccCCCCC
Q 023227 135 ----RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV 194 (285)
Q Consensus 135 ----~~d~iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~ 194 (285)
.||+||+|+|+||+++|++.++|+. .|++|||+|||++++++. .++. ..+.+++++.+..
T Consensus 263 vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~ 342 (441)
T PRK02991 263 VDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRA 342 (441)
T ss_pred cccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCc
Confidence 3679999999999999999999997 688999999999997652 2332 1244567766542
Q ss_pred ---ccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-------C---CCCEEEEEecCC
Q 023227 195 ---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-------N---AGKLIVVIFPSF 261 (285)
Q Consensus 195 ---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-------~---~~~~vv~i~~~g 261 (285)
++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+++|+++++.++.. . ++++||+++ ||
T Consensus 343 ~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~g 421 (441)
T PRK02991 343 SGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TG 421 (441)
T ss_pred chhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CC
Confidence 344456889999999999999999999999999999999999999987665322 1 478888888 66
Q ss_pred CCCCcchhhcHHHHHh
Q 023227 262 GERYLSSVLFESVRKE 277 (285)
Q Consensus 262 G~~~~~~~~~~~~~~~ 277 (285)
|+. .+....+++...
T Consensus 422 g~~-~~~~~~~~~~~~ 436 (441)
T PRK02991 422 GSM-VPEEEMEQYLAK 436 (441)
T ss_pred CCC-CCHHHHHHHHHh
Confidence 664 223345555443
No 36
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-53 Score=365.83 Aligned_cols=258 Identities=24% Similarity=0.280 Sum_probs=230.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++||+||||.||+.|++...-++++ ..+|+++|.||||.|+|++|+++|+|++||||..+|..|+++++.+||+|+
T Consensus 89 ~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vi 164 (457)
T KOG1250|consen 89 DLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVI 164 (457)
T ss_pred hcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEE
Confidence 4799999999999999998776664 267999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
+.+. +|+++...+.+++++. ++.|++||++|+. ++|++|++.||.+|+...+++||||||+||+++||+.++|+..
T Consensus 165 l~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~ 240 (457)
T KOG1250|consen 165 LSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVG 240 (457)
T ss_pred Eecc--cHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhC
Confidence 9996 7899999999999997 8999999999998 8999999999999997666699999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCCC---ccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|+++|||||++++.++. .|++. .+.++|++...+ ++.+.+.++|+++.|+|+|+..++.++.+++..+
T Consensus 241 p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~v 320 (457)
T KOG1250|consen 241 PHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMV 320 (457)
T ss_pred CCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhhe
Confidence 99999999999998764 45543 345577776543 4556688999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
+||++|+++|+++.. +....+++++|.++ +|++.+.|.
T Consensus 321 vEpAgaaaLaai~~~-~~~~lk~~~vv~il-sG~n~~~~~ 358 (457)
T KOG1250|consen 321 VEPAGAAALAAIYSG-KLNHLKGKKVVSIL-SGGNIDFDS 358 (457)
T ss_pred eccchHHHHHHHHhc-cccccCCceEEeec-ccCCCCccc
Confidence 999999999999987 44457999999999 888855543
No 37
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.1e-52 Score=374.60 Aligned_cols=263 Identities=22% Similarity=0.274 Sum_probs=222.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+.+|++|+||||+.. +..|+++++.+||+|
T Consensus 51 ~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V 125 (352)
T PRK06721 51 GANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEI 125 (352)
T ss_pred CCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEE
Confidence 5799999999999999999999887 6899999999999999999999999999999975 788999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHH----HH
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAG----KF 155 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~----~~ 155 (285)
+.+++ +++++.+.+++++++. ++++++ +.||.+ +.||.++++||++|++..||+||+|+|+||+++|++ .+
T Consensus 126 ~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~ 200 (352)
T PRK06721 126 ISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEY 200 (352)
T ss_pred EEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHH
Confidence 99985 5788888899998886 566665 558887 789999999999999767999999999999999854 45
Q ss_pred HHhhC-CCcEEEEEecCCCCccCCCCCC---CccccccCCCCCccC------cccccCCeEEEeCHHHHHHHHHHHHHhc
Q 023227 156 LKEKN-PNIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKE 225 (285)
Q Consensus 156 ~k~~~-~~~~vigv~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~d~~~~v~d~e~~~a~~~l~~~~ 225 (285)
+|..+ |++|||+|||++++++..++.. .+..++++.+. |.. ....++|+++.|+|+|++++++.|++++
T Consensus 201 lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~e 279 (352)
T PRK06721 201 EKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSE 279 (352)
T ss_pred HHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhc
Confidence 56554 8999999999999877655432 23335555432 211 1245789999999999999999999999
Q ss_pred CCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcchhhcHHH
Q 023227 226 GLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFESV 274 (285)
Q Consensus 226 gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~ 274 (285)
||++||++|+++++++++.+++. .++++||+++|++|.||++....+.|
T Consensus 280 Gi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~ 329 (352)
T PRK06721 280 GVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNT 329 (352)
T ss_pred CcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhcc
Confidence 99999999999999999987654 46789999999999999987554434
No 38
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2e-52 Score=371.58 Aligned_cols=261 Identities=20% Similarity=0.236 Sum_probs=221.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.+... .++||++|+||||+|+|++|+.+|++|+||||+.+++.|++.++.|||+|+
T Consensus 42 ~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~ 117 (317)
T TIGR02991 42 HRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVR 117 (317)
T ss_pred cCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999998764322 157999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. .++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|+++++|+.+
T Consensus 118 ~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~ 192 (317)
T TIGR02991 118 IVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAAR 192 (317)
T ss_pred EeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhC
Confidence 9996 5778888889988876 7899999999998 7999999999999994 68999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC-----CCccccccC----C-CCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcC
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIG----A-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 226 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~g 226 (285)
|++|||+|||++++++. .+++ .++.+++++ . ...++.+..+++|+++.|+|+|++++++.|++++|
T Consensus 193 p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g 272 (317)
T TIGR02991 193 PDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEER 272 (317)
T ss_pred CCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCC
Confidence 99999999999887663 2332 223445442 1 12345566788999999999999999999999999
Q ss_pred CeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHH
Q 023227 227 LFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 276 (285)
Q Consensus 227 i~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 276 (285)
+++||++|+++|++++... ..+++||+|+ |||+. |...+.+++.
T Consensus 273 ~~ve~s~a~~~Aal~~~~~---~~~~~vvvvl-tG~n~--~~~~~~~~~~ 316 (317)
T TIGR02991 273 EIVEGAGAVGIAALLAGKI---KNPGPCAVIV-SGRNI--DMDLHKRIID 316 (317)
T ss_pred cEEcchHHHHHHHHHcCcc---ccCCcEEEEe-CCCCC--CHHHHHHHHc
Confidence 9999999999999974211 2467888888 89995 4445676653
No 39
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-52 Score=384.33 Aligned_cols=263 Identities=22% Similarity=0.296 Sum_probs=227.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.++.. .++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+
T Consensus 46 ~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~ 121 (403)
T PRK07334 46 NLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVV 121 (403)
T ss_pred cCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 4799999999999999998764432 146999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|++ .||+||+|+|+|||++|+++++|..+
T Consensus 122 ~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~ 196 (403)
T PRK07334 122 LHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDAP-DLDTLVVPIGGGGLISGMATAAKALK 196 (403)
T ss_pred EECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcCC-CCCEEEEecCHHHHHHHHHHHHHHhC
Confidence 9985 6788999999998885 8899999999998 7999999999999994 79999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccCC---CCC----CCccccccCCC---CCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeee
Q 023227 161 PNIKLYGIEPTESPVLSG---GKP----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG 230 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~~---~~~----~~~~~~gl~~~---~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~ 230 (285)
|++|||+|||++++++.. +.. .++.+++++.+ ..|+.++.+++|+++.|+|+|++++++.|++++|+++|
T Consensus 197 ~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~ 276 (403)
T PRK07334 197 PDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVE 276 (403)
T ss_pred CCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEe
Confidence 999999999999987642 211 23556777743 34566678899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 231 ISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 231 p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
|++|+++++++++.++ .++++||+++ +||+.+.+ ++.+++..
T Consensus 277 ~s~a~~~aa~~~~~~~--~~~~~vv~i~-~ggn~d~~--~l~~il~~ 318 (403)
T PRK07334 277 GAGAAGLAALLAYPER--FRGRKVGLVL-SGGNIDTR--LLANVLLR 318 (403)
T ss_pred chHHHHHHHHHhCchh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999999999886553 4678999999 67885444 56665544
No 40
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=375.29 Aligned_cols=255 Identities=20% Similarity=0.190 Sum_probs=216.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++|++. ++||++|+||||+++|++|+.+|++|+||||+++++.|++.++.+||+|+
T Consensus 46 ~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~ 122 (338)
T PRK06608 46 SLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVI 122 (338)
T ss_pred CCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEE
Confidence 579999999999999999999988753 57999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. .+++.+.+++ +++ +++||++||+||.+ +.||++++.||++|++.+||+||+|+|+||+++|++.++|...
T Consensus 123 ~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~ 196 (338)
T PRK06608 123 LTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELIS 196 (338)
T ss_pred EECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcC
Confidence 9974 3566677777 444 47999999999988 7899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCC------CCccccccCCCCCccC-cc-cccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVPGV-LE-VNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~------~~~~~~gl~~~~~~~~-~~-~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|+++||+|||.+++++. .++. ..+..++++.+..... +. .+.+|+++.|+|+|++++++.|++++|++
T Consensus 197 ~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~ 276 (338)
T PRK06608 197 PTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVI 276 (338)
T ss_pred CCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcE
Confidence 99999999999997542 3332 1344567765432111 11 13479999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCc
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 266 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 266 (285)
+||++|++++++++++++. .++++||+|+ +||+++.
T Consensus 277 vepssaa~laa~~~~~~~~-~~~~~Vv~v~-tgg~~d~ 312 (338)
T PRK06608 277 CEPSSAINMVAVVNWLKTQ-SKPQKLLVIL-SGGNIDP 312 (338)
T ss_pred EchHHHHHHHHHHhhchhh-cCCCeEEEEe-CCCccCH
Confidence 9999999999999986653 4678999999 5687544
No 41
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-52 Score=372.64 Aligned_cols=263 Identities=23% Similarity=0.286 Sum_probs=224.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.+++... +.|+++|+||||+++|++|+++|++|+||||++.++.|+++++.+||+|+
T Consensus 44 ~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~ 120 (322)
T PRK06110 44 NHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120 (322)
T ss_pred cCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 579999999999999999998876533 46999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++ +++++.+.+++++++. ++||+++| +|.+ +.||.|+++||++|++ .+|+||+|+|+||+++|++.++|+.+
T Consensus 121 ~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~ 194 (322)
T PRK06110 121 EHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALG 194 (322)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhC
Confidence 9975 6788888899988886 78999998 6666 7899999999999995 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCCC-c--cCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|++|||+|||++++++. .++.. .+..++++.... | +.+.++++|+++.|+|+|++++++.|++++|++
T Consensus 195 ~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~ 274 (322)
T PRK06110 195 LKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNV 274 (322)
T ss_pred CCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcE
Confidence 99999999999997753 33332 234455543321 1 223368899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHHh
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 277 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 277 (285)
+||++++++++++++.+. .++++||+|+ |||+.|++ .|.+++..
T Consensus 275 ~e~ssaa~laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~~~~~~~ 318 (322)
T PRK06110 275 AEGAGAAALAAALQERER--LAGKRVGLVL-SGGNIDRA--VFARVLAG 318 (322)
T ss_pred EehHHHHHHHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HHHHHHhh
Confidence 999999999999986554 3678899999 88996555 57776653
No 42
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.8e-52 Score=381.67 Aligned_cols=260 Identities=20% Similarity=0.251 Sum_probs=224.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.+|.+.|. ++|+++|+||||+|+|++|+++|++|+||||++++..|+.+++.+||+|+
T Consensus 113 ~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi 187 (421)
T PRK07591 113 SVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLV 187 (421)
T ss_pred CCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 4799999999999999999999987 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCC-CCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~-~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++ +++++.+.+++++++.+++++++++.+|.. ++||+|+++||++|++++ ||+||+|+|+||+++|++++||++
T Consensus 188 ~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel 264 (421)
T PRK07591 188 AVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQEL 264 (421)
T ss_pred EECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH
Confidence 9996 578888999998888767899998888887 789999999999999755 999999999999999999999998
Q ss_pred -------CCCcEEEEEecCCCCccC----CCCC------CCccccccCCCCCc-----cCcccccCCeEEEeCHHHHHHH
Q 023227 160 -------NPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIET 217 (285)
Q Consensus 160 -------~~~~~vigv~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~d~~~~v~d~e~~~a 217 (285)
.+.+|||+|||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++
T Consensus 265 ~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a 344 (421)
T PRK07591 265 IKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEG 344 (421)
T ss_pred HhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHH
Confidence 578999999999987654 2221 12233444332211 1223566778999999999999
Q ss_pred HHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcch
Q 023227 218 AKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 218 ~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 268 (285)
++.|++++||++||++|+++++++++.+++. .++++||+++|++|+||++.
T Consensus 345 ~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 345 IKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred HHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 9999999999999999999999999988765 47889999997779999875
No 43
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-52 Score=370.33 Aligned_cols=260 Identities=25% Similarity=0.318 Sum_probs=219.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.++.. .++||++|+||||+|+|++|+++|++|+||||+++++.|+..++.+||+|+
T Consensus 43 ~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~ 118 (317)
T PRK06815 43 HLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVR 118 (317)
T ss_pred CCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence 5799999999999999987543322 256999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. +++++...+++++++. +++|++||+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.++|+..
T Consensus 119 ~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~ 193 (317)
T PRK06815 119 LYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLS 193 (317)
T ss_pred EECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhC
Confidence 9996 4778888888888875 7899999999987 7899999999999995 69999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCCC----ccCcccccCCeEEEeCHHHHHHHHHHHHHhcCC
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFV----PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 227 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~----~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi 227 (285)
|++|||||||++++++. .+++. .+.+++++.+.. ++.+..+++|+++.|+|+|++++++.|++++||
T Consensus 194 ~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi 273 (317)
T PRK06815 194 PKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRW 273 (317)
T ss_pred CCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCC
Confidence 99999999999998764 23321 234555543322 233457889999999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHH
Q 023227 228 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 274 (285)
Q Consensus 228 ~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 274 (285)
++||++|+++++++++.++ .++++||+|+ |||+.++ ..+.++
T Consensus 274 ~vepssg~alaa~~~~~~~--~~~~~vv~i~-tG~~~~~--~~~~~~ 315 (317)
T PRK06815 274 LIEGAAGVALAAALKLAPR--YQGKKVAVVL-CGKNIVL--EKYLEA 315 (317)
T ss_pred eEecHHHHHHHHHHhCchh--cCCCcEEEEE-CCCCCCH--HHHHHH
Confidence 9999999999999998765 3678999999 6677333 334443
No 44
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.5e-51 Score=371.62 Aligned_cols=258 Identities=22% Similarity=0.285 Sum_probs=221.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++..++++|. ++||++|+||||+++|++|+.+|++|+||||++ .+..|++.++.+||+|
T Consensus 54 ~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~V 128 (353)
T PRK07409 54 GLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEI 128 (353)
T ss_pred CCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEE
Confidence 5799999999999999999999887 689999999999999999999999999999997 5889999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhh
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
+.+++ .++++.+.+++++++. +++++++ .||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++|+.
T Consensus 129 i~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~ 203 (353)
T PRK07409 129 IQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEY 203 (353)
T ss_pred EEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHH
Confidence 99996 6788889999998887 4777765 58888 789999999999999767999999999999999999999987
Q ss_pred CC------CcEEEEEecCCCCccCCCCCC---CccccccCCCCCccCc------ccccCCeEEEeCHHHHHHHHHHHHHh
Q 023227 160 NP------NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALK 224 (285)
Q Consensus 160 ~~------~~~vigv~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~------~~~~~d~~~~v~d~e~~~a~~~l~~~ 224 (285)
.+ .+|||+|||.+++++..+++. .+..++++.+. |..+ .+++.++++.|+|+|+++++++|+++
T Consensus 204 ~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~ 282 (353)
T PRK07409 204 HQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARK 282 (353)
T ss_pred HHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 43 489999999999877655443 22334554332 2222 23456789999999999999999999
Q ss_pred cCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcchh
Q 023227 225 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 225 ~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 269 (285)
+|+++||++|+++++++++.+++. .++++||+++|++|+||.++.
T Consensus 283 egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 283 EGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred CCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 999999999999999999887643 467899999977899999864
No 45
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.8e-51 Score=365.74 Aligned_cols=255 Identities=25% Similarity=0.295 Sum_probs=220.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.++.++|. ++||++|+||||+|+|++|+.+|++|++|||+++++.|+++++.+||+|+
T Consensus 46 ~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi 120 (324)
T cd01563 46 GLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVL 120 (324)
T ss_pred CCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999999999885 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC-CCCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~-~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.++. +++++.+.+++++++. ++|++|++||.+ +.||.+++.||++|+++ .||+||+|+|+||+++|++.++|..
T Consensus 121 ~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~ 195 (324)
T cd01563 121 AVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKEL 195 (324)
T ss_pred EECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHH
Confidence 9986 5778888889988875 789999999998 78999999999999963 6999999999999999999999987
Q ss_pred C------CCcEEEEEecCCCCccC----CCCC-------CCccccccCCCCCc-c----CcccccCCeEEEeCHHHHHHH
Q 023227 160 N------PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVP-G----VLEVNIIDEVVQVSSDEAIET 217 (285)
Q Consensus 160 ~------~~~~vigv~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~-~----~~~~~~~d~~~~v~d~e~~~a 217 (285)
. |+++||+|||.+++++. .+.. ..+.+++++.+..+ + .+..++.|+++.|+|+|++++
T Consensus 196 ~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 275 (324)
T cd01563 196 KELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEA 275 (324)
T ss_pred HhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHH
Confidence 5 57999999999987553 2211 12344566544311 1 123466789999999999999
Q ss_pred HHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCC
Q 023227 218 AKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 265 (285)
Q Consensus 218 ~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 265 (285)
++.|++++|+++||++|+++++++++.+++. .++++||+++|++|.|+
T Consensus 276 ~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 276 QKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 9999999999999999999999999987653 46789999999999874
No 46
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-51 Score=365.00 Aligned_cols=252 Identities=23% Similarity=0.324 Sum_probs=214.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.+ +. ++||++|+||||+|+|++|+++|++|+||||+.+++.|+.+++.+||+|+
T Consensus 45 ~~nptGS~K~R~a~~~~~~~~~-~~-----~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~ 118 (310)
T PRK08246 45 HLQHTGSFKARGAFNRLLAAPV-PA-----AGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVV 118 (310)
T ss_pred CCCCCCCCHHHHHHHHHHhhcc-cC-----CeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEE
Confidence 5799999999999999988765 22 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.++. .++++.+.+++++++. +++|++||+||.+ +.||+++++||++|+ +.||+||+|+|+||+++|++.+++.
T Consensus 119 ~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~-- 191 (310)
T PRK08246 119 VVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG-- 191 (310)
T ss_pred EeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC--
Confidence 9986 5778888888888876 8999999999998 789999999999999 4799999999999999999999974
Q ss_pred CCcEEEEEecCCCCccC----CCCCCCcc-----ccccCCCCC---ccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPGPHK-----IQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~~~~-----~~gl~~~~~---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
.+|||+|||++++++. .+++.... .++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|++
T Consensus 192 -~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~ 270 (310)
T PRK08246 192 -RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLA 270 (310)
T ss_pred -CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCce
Confidence 4899999999998664 34443222 234444332 3446678899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
+||++|++++++++...+. .++++||+|+ +||+.+++.
T Consensus 271 ~e~s~aa~lAa~~~~~~~~-~~~~~vv~i~-~g~n~d~~~ 308 (310)
T PRK08246 271 VEPGAATALAALLSGAYVP-APGERVAVVL-CGANTDPAT 308 (310)
T ss_pred eehHHHHHHHHHHhCCccc-cCCCeEEEEE-CCCCCChhh
Confidence 9999999999997643322 3677888898 889976653
No 47
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=8.3e-51 Score=362.64 Aligned_cols=253 Identities=22% Similarity=0.269 Sum_probs=213.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||+|++.+++.+++++|. ++||++|+||||+|+|++|+.+|++|+||||..++..|+++++.+||+|+
T Consensus 39 ~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~ 113 (319)
T PRK06381 39 GANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEII 113 (319)
T ss_pred CCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 4799999999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCC-CCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++ +++++.+.+++++++. ++|++++++ ||...+.||+++++||++|++..||+||+|+|+||+++|++++||+.
T Consensus 114 ~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~ 190 (319)
T PRK06381 114 YVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRL 190 (319)
T ss_pred EcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHH
Confidence 9996 4778888898888875 788998886 76323789999999999999767999999999999999999999998
Q ss_pred ------CCCcEEEEEecCCCCccC----CCCCCC-----ccc-c-ccCCCCC---------ccCcccccCCeEEEeCHHH
Q 023227 160 ------NPNIKLYGIEPTESPVLS----GGKPGP-----HKI-Q-GIGAGFV---------PGVLEVNIIDEVVQVSSDE 213 (285)
Q Consensus 160 ------~~~~~vigv~~~~~~~~~----~~~~~~-----~~~-~-gl~~~~~---------~~~~~~~~~d~~~~v~d~e 213 (285)
.|.+|||+|+|.+++++. .+.... ..+ + .++.+.. ...+..++.++++.|+|+|
T Consensus 191 ~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e 270 (319)
T PRK06381 191 YDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDE 270 (319)
T ss_pred HhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHH
Confidence 799999999999986543 121110 011 1 1111110 0112356677999999999
Q ss_pred HHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCC
Q 023227 214 AIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 263 (285)
Q Consensus 214 ~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 263 (285)
+++++++|++++||++||++|+++++++++.+++.. +++||+++ |||.
T Consensus 271 ~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 271 MVKYAELLRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 999999999999999999999999999999887643 47899999 7775
No 48
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=9.5e-51 Score=367.85 Aligned_cols=244 Identities=22% Similarity=0.268 Sum_probs=211.1
Q ss_pred CCCC-CCCchhHHHHHHHHH-----HHHcCCCCCCC----------------eEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 023227 1 MMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLII 58 (285)
Q Consensus 1 ~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i 58 (285)
++|| |||||||++.+++.. +.+.|.+.|+. ++||++|+||||+++|++|+.+|++|+|
T Consensus 83 ~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~I 162 (404)
T cd06447 83 SHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTV 162 (404)
T ss_pred CCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 5799 999999999999864 77889988875 4899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC---C
Q 023227 59 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---R 135 (285)
Q Consensus 59 v~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~---~ 135 (285)
|||+++++.|++.|+.+||+|+.++. +++++.+.+++++++.++++|++|++++.. +.||+|+++||++|+++ +
T Consensus 163 vvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~ 239 (404)
T cd06447 163 HMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIK 239 (404)
T ss_pred EECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCc
Confidence 99999999999999999999999985 678888999999988767889999755554 89999999999999952 3
Q ss_pred -----CCEEEEccCCcccHHHHHHHHHhh-CCCcEEEEEecCCCCccC----CCCC-----------CCccccccCCCCC
Q 023227 136 -----IDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV 194 (285)
Q Consensus 136 -----~d~iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~ 194 (285)
||+||+|+|+||+++|++++||+. .|+++||+|||++++++. .+.. ..+.++||+++..
T Consensus 240 vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p 319 (404)
T cd06447 240 VDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRP 319 (404)
T ss_pred cccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCc
Confidence 558999999999999999999997 789999999999987652 2221 2245567766542
Q ss_pred ---ccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcC
Q 023227 195 ---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 247 (285)
Q Consensus 195 ---~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~ 247 (285)
++.+.++.+|+++.|+|+|+.++++.|++++|+++||++|+++++++++.++.
T Consensus 320 ~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 320 SGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred chhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 23344688999999999999999999999999999999999999999988753
No 49
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2.3e-50 Score=368.09 Aligned_cols=259 Identities=21% Similarity=0.241 Sum_probs=220.7
Q ss_pred CCCC-CCCchhHHHHHHHHH-----HHHcCCCCCCC----------------eEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 023227 1 MMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLII 58 (285)
Q Consensus 1 ~~np-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i 58 (285)
++|| |||||+|++.+++.. +.+.|.++++. ++||++|+||||+++|++|+.+|++|+|
T Consensus 101 ~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~I 180 (431)
T TIGR02035 101 SHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTV 180 (431)
T ss_pred ccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 5899 999999999999874 77889887764 4899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC----
Q 023227 59 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---- 134 (285)
Q Consensus 59 v~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~---- 134 (285)
|||++++..|++.++.|||+|+.++. +|+++.+.+++++++.+++|++++. |+.+++.||+|+++||++|+++
T Consensus 181 vmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~ 257 (431)
T TIGR02035 181 HMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIV 257 (431)
T ss_pred EECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999996 6889999999999887677888874 5556689999999999999953
Q ss_pred ----CCCEEEEccCCcccHHHHHHHHHhh-CCCcEEEEEecCCCCccC----CCCC-----------CCccccccCCCCC
Q 023227 135 ----RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV 194 (285)
Q Consensus 135 ----~~d~iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~ 194 (285)
.||+|++|+|+||+++|+++++|+. +|++|||+|||++++++. .++. ..+.++||+++..
T Consensus 258 ~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p 337 (431)
T TIGR02035 258 VDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRP 337 (431)
T ss_pred cccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCc
Confidence 4779999999999999999999998 899999999999997642 2221 2356678877653
Q ss_pred c---cCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcC-----------C-CCCCEEEEEec
Q 023227 195 P---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP-----------E-NAGKLIVVIFP 259 (285)
Q Consensus 195 ~---~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~-----------~-~~~~~vv~i~~ 259 (285)
+ +.+..+++|+++.|+|+|+.++++.|++++|+++||++|++++++.++++.. . .++.+.|+..
T Consensus 338 ~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 416 (431)
T TIGR02035 338 SGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA- 416 (431)
T ss_pred chhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-
Confidence 2 2234568999999999999999999999999999999999999999887652 0 1455777777
Q ss_pred CCCC
Q 023227 260 SFGE 263 (285)
Q Consensus 260 ~gG~ 263 (285)
|||.
T Consensus 417 tg~~ 420 (431)
T TIGR02035 417 TGGG 420 (431)
T ss_pred cCCC
Confidence 6665
No 50
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1e-50 Score=362.44 Aligned_cols=244 Identities=23% Similarity=0.227 Sum_probs=204.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.++++.+.++|. ++|+++|+||||.|+|++|+.+|++|+||||++++..|+.+++.|||+|+
T Consensus 73 ~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi 147 (338)
T PRK06450 73 FLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVV 147 (338)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEE
Confidence 5799999999999999999999876 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC-CCCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~-~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++ +++++.+. +++. +.+|++++.||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++||++
T Consensus 148 ~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el 219 (338)
T PRK06450 148 RVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHL 219 (338)
T ss_pred EECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHH
Confidence 9996 45554433 4444 7789999999998 89999999999999974 5999999999999999999999998
Q ss_pred CC------CcEEEEEecCCCCccC----CCCCC-----CccccccCCCCCccCc------ccccCCeEEEeCHHHHHHHH
Q 023227 160 NP------NIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETA 218 (285)
Q Consensus 160 ~~------~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~------~~~~~d~~~~v~d~e~~~a~ 218 (285)
.+ .+|||+|||++++++. ..... .+..++|..+. |... .++. ++.+.|+|+|+++++
T Consensus 220 ~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~ 297 (338)
T PRK06450 220 LDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAW 297 (338)
T ss_pred HhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHH
Confidence 64 3799999999987664 21111 22334443322 2222 2344 789999999999999
Q ss_pred HHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCc
Q 023227 219 KLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 266 (285)
Q Consensus 219 ~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 266 (285)
++|++ +|+++||++|+++|+++++ ++++||+++|++|.|.+
T Consensus 298 ~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 298 KELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 99987 6999999999999999875 34689999989998864
No 51
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.7e-51 Score=361.78 Aligned_cols=252 Identities=27% Similarity=0.360 Sum_probs=220.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.++.+.|. .++||++|+||||+|+|++|+++|++|++|+|++.+..|++.++.+||+|+
T Consensus 40 ~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi 115 (304)
T cd01562 40 NLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVV 115 (304)
T ss_pred cCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence 4799999999999999999887763 257999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++ +++++.+.+++++++. +++|++|++||.+ +.||.++++||++|++ .||+||+|+|||||++|+++++|..+
T Consensus 116 ~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~ 190 (304)
T cd01562 116 LYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALS 190 (304)
T ss_pred EeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhC
Confidence 9997 4788889999998886 7899999999987 7899999999999996 49999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccC----CCCCC-----CccccccCCCC---CccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 161 PNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 161 ~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
|.+|||+|+|.+++++. .++.. .+..++++.+. .++.+..+++|+++.|+|+|++++++.|++++|++
T Consensus 191 ~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~ 270 (304)
T cd01562 191 PNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLV 270 (304)
T ss_pred CCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCce
Confidence 99999999999987653 22221 22334554332 12334567899999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 023227 229 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 264 (285)
Q Consensus 229 ~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 264 (285)
+||++|+++++++++.++. ++++||+|+ +||+.
T Consensus 271 ~~pss~~a~a~~~~~~~~~--~~~~vv~i~-tGG~~ 303 (304)
T cd01562 271 AEPAGALALAALLSGKLDL--KGKKVVVVL-SGGNI 303 (304)
T ss_pred EchhHHHHHHHHHhCcccc--CCCeEEEEe-cCCCC
Confidence 9999999999999987764 678999999 78874
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.1e-50 Score=369.19 Aligned_cols=257 Identities=24% Similarity=0.247 Sum_probs=220.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+.+|++|+||+|++ ++..|+.+++.+||+|
T Consensus 91 ~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~v 165 (397)
T PRK06260 91 GANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKV 165 (397)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEE
Confidence 5799999999999999999999887 689999999999999999999999999999997 7899999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC-CCCEEEEccCCcccHHHHHHHHHh
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~-~~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
+.+++ +++++.+.+++++++. ++|+++++ ||.+ +.||+|+++||++|+++ .||+||+|+|+||+++|++++||+
T Consensus 166 i~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~ 240 (397)
T PRK06260 166 LEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKE 240 (397)
T ss_pred EEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 99996 6788888999988886 78899887 8888 78999999999999976 699999999999999999999999
Q ss_pred hCC------CcEEEEEecCCCCccC----CCCCC-------CccccccCCCCCccC------cccccCCeEEEeCHHHHH
Q 023227 159 KNP------NIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAI 215 (285)
Q Consensus 159 ~~~------~~~vigv~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~~------~~~~~~d~~~~v~d~e~~ 215 (285)
+.+ .+|||+|||+++.++. .+... .+..+++..+. |.. ..++..+.++.|+|+|++
T Consensus 241 l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~ 319 (397)
T PRK06260 241 LVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEIL 319 (397)
T ss_pred HHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHH
Confidence 863 3799999999997653 22221 12233433221 211 234556789999999999
Q ss_pred HHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcch
Q 023227 216 ETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 216 ~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 268 (285)
++++.|++++|+++||++|+++++++++.+++. .++++||+++|++|.|+.+.
T Consensus 320 ~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~ 373 (397)
T PRK06260 320 DAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA 373 (397)
T ss_pred HHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence 999999999999999999999999999988765 47789999998889988764
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=3.7e-50 Score=372.08 Aligned_cols=261 Identities=20% Similarity=0.169 Sum_probs=222.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++..+.+.|........|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+++.+||+|
T Consensus 158 ~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~V 237 (484)
T PLN02569 158 GISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALV 237 (484)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEE
Confidence 589999999999999999998877532222579999999999999999999999999999996 7889999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCC-CCEEEEccCCcccHHHHHHHHHh
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~-~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
+.+++ +|+++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|++++ ||+||+|+|+||+++|++++||+
T Consensus 238 i~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfke 312 (484)
T PLN02569 238 LSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKM 312 (484)
T ss_pred EEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHH
Confidence 99997 6889999999988886 68999988 8988 789999999999999765 99999999999999999999998
Q ss_pred hC------CCcEEEEEecCCCCccC----CCCC-------CCccccccCCCCCccCcc------cccCCeEEEeCHHHHH
Q 023227 159 KN------PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAI 215 (285)
Q Consensus 159 ~~------~~~~vigv~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~~------~~~~d~~~~v~d~e~~ 215 (285)
+. +.+|||+||+++++++. .+.. .++.+++++.+. |.... .+.-+.++.|+|+|++
T Consensus 313 l~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~ 391 (484)
T PLN02569 313 CKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELM 391 (484)
T ss_pred HHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHH
Confidence 73 45799999999997664 2221 234556665542 43322 2333457999999999
Q ss_pred HHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcch
Q 023227 216 ETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 216 ~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 268 (285)
++++. ++++||++||++|+++++++++.+++. .++++||+++|++|.||.+.
T Consensus 392 ~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 392 DAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999 889999999999999999999988764 46789999999999999874
No 54
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=330.48 Aligned_cols=255 Identities=24% Similarity=0.321 Sum_probs=222.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 2 MEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 2 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+|.|||||.|||.|.++.+.++.+ .+++++.||||||.|+|++|+.+|+|++||||+++|..|+..++.||++|++
T Consensus 49 fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~ 124 (323)
T KOG1251|consen 49 FQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIF 124 (323)
T ss_pred hhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEE
Confidence 688999999999999998874333 2689999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC
Q 023227 82 TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP 161 (285)
Q Consensus 82 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~ 161 (285)
+++. .+++.+.++++.++. +++.++||++|.. +.|++|+++|+++|++ .+|++|+|+|+||+++|++.+.|.+.|
T Consensus 125 ~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P 199 (323)
T KOG1251|consen 125 CEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKP 199 (323)
T ss_pred ecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCC
Confidence 9974 457788899999997 8899999999998 8999999999999995 799999999999999999999999999
Q ss_pred CcEEEEEecCCCCc----cCCCCC-----CCccccccCCC---CCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCee
Q 023227 162 NIKLYGIEPTESPV----LSGGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 229 (285)
Q Consensus 162 ~~~vigv~~~~~~~----~~~~~~-----~~~~~~gl~~~---~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~ 229 (285)
+++|++|||++... +..|+. ..+.++|.... ..+|.+.++++|++++|+|+|+.++++.+|++..+.+
T Consensus 200 ~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~v 279 (323)
T KOG1251|consen 200 SIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVV 279 (323)
T ss_pred CcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheee
Confidence 99999999988753 223332 12344555432 3567788999999999999999999999999999999
Q ss_pred ehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 230 GISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 230 ~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
||+++.++|+++..-.+ ...+++.+|+ +|||.|+..
T Consensus 280 EPTa~lgfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 280 EPTAALGFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred ccchhHHHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 99999999999864333 4578999998 999977654
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=6.3e-50 Score=365.05 Aligned_cols=269 Identities=20% Similarity=0.228 Sum_probs=220.7
Q ss_pred CCCCCchhHHHHHHHHHHHH--cCC--------------C---CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 3 EPCSSVKDRIGYSMISDAEA--KGL--------------I---TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~--~g~--------------~---~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
|||||||+|++.+.+..+.. .+. + .++ .+|+++|+||||+|+|++|+.+|++|+||||++
T Consensus 71 ~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~ 149 (399)
T PRK08206 71 FGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKG 149 (399)
T ss_pred CCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 69999999999998887653 222 0 011 369999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC-CCchHhHHhchHHHHHhhhCC---
Q 023227 64 MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG--- 134 (285)
Q Consensus 64 ~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~EI~~q~~~--- 134 (285)
+++.|+..++.+||+|+.++. +++++.+.+++++++. +++|++ ||+| |.+.+.||+|+++||++|+++
T Consensus 150 ~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~ 226 (399)
T PRK08206 150 SSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGV 226 (399)
T ss_pred CCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCC
Confidence 999999999999999999996 6788888999988886 788886 6765 566689999999999999975
Q ss_pred CCCEEEEccCCcccHHHHHHHHHhhC--CCcEEEEEecCCCCccC----CCCCC------CccccccCCCC---CccCcc
Q 023227 135 RIDALVSGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGF---VPGVLE 199 (285)
Q Consensus 135 ~~d~iv~~vG~Gg~~aGi~~~~k~~~--~~~~vigv~~~~~~~~~----~~~~~------~~~~~gl~~~~---~~~~~~ 199 (285)
.||+||+|+|+||+++|++.++|+++ +.+|||+|||++++++. .+++. .+..+++..+. .++.+.
T Consensus 227 ~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~ 306 (399)
T PRK08206 227 PPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEIL 306 (399)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHH
Confidence 59999999999999999999999984 47999999999998763 23321 23445665433 234455
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHH----hcCCeeehhHHHHHHHHHHHHhc---------CC-CCCCEEEEEecCCCCCC
Q 023227 200 VNIIDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIAKR---------PE-NAGKLIVVIFPSFGERY 265 (285)
Q Consensus 200 ~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~~g~a~aa~~~~~~~---------~~-~~~~~vv~i~~~gG~~~ 265 (285)
++.+|+++.|+|+|++++++.|++ ++|+++||++|+++++++++.++ +. .++++||+|+ |+|+++
T Consensus 307 ~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tgG~~d 385 (399)
T PRK08206 307 RNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TEGDTD 385 (399)
T ss_pred HHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CCCCCC
Confidence 788999999999999999999996 78999999999999999976532 22 3578999999 699977
Q ss_pred cchhhcHHHHHhh
Q 023227 266 LSSVLFESVRKEA 278 (285)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (285)
.+. |.+++...
T Consensus 386 ~~~--~~~~~~~~ 396 (399)
T PRK08206 386 PDR--YREIVWEG 396 (399)
T ss_pred HHH--HHHHhcCC
Confidence 664 67666443
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.8e-49 Score=367.41 Aligned_cols=253 Identities=21% Similarity=0.253 Sum_probs=216.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++.+|++.|. ++|+++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+
T Consensus 88 ~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi 162 (442)
T PRK05638 88 TRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKII 162 (442)
T ss_pred CCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEE
Confidence 5799999999999999999998876 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 160 (285)
.+++ +++++.+.+++++++. ++|++++++||.+ +.||+|+++||++|++ ||+||+|+|+||+++|++++||++.
T Consensus 163 ~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~ 236 (442)
T PRK05638 163 RYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELL 236 (442)
T ss_pred EECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHH
Confidence 9985 6788888999988775 7999999999998 8899999999999995 9999999999999999999999987
Q ss_pred C------CcEEEEEecCCCCccC----CCCC--CCccccccCCCCCcc------CcccccCCeEEEeCHHHHHHHHHHHH
Q 023227 161 P------NIKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGFVPG------VLEVNIIDEVVQVSSDEAIETAKLLA 222 (285)
Q Consensus 161 ~------~~~vigv~~~~~~~~~----~~~~--~~~~~~gl~~~~~~~------~~~~~~~d~~~~v~d~e~~~a~~~l~ 222 (285)
+ .+|||+|||++++++. .+.. ..+...++..+. |. ...+++.+.++.|+|+++.++++.++
T Consensus 237 ~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~ 315 (442)
T PRK05638 237 EIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKN-PVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA 315 (442)
T ss_pred hCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 5 3799999999987653 2211 122334443221 11 12234456789999999998888876
Q ss_pred HhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCc
Q 023227 223 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 266 (285)
Q Consensus 223 ~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 266 (285)
+ +||++||++|+++|+++++.+++. .++++||+++|++|.|+.
T Consensus 316 ~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 316 K-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred h-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 5 799999999999999999988765 568899999999999984
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.5e-48 Score=333.56 Aligned_cols=220 Identities=44% Similarity=0.641 Sum_probs=204.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++|||||||||++.+++..+.++|.+ ++ .+|+++|+||||+|+|++|+.+|++|++|+|++.+..|+++++.+|++|+
T Consensus 23 ~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~ 100 (244)
T cd00640 23 FLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVV 100 (244)
T ss_pred ccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEE
Confidence 47999999999999999999999865 33 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCC-CCCEEEEccCCcccHHHHHHHHHhh
Q 023227 81 LTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK 159 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~-~~d~iv~~vG~Gg~~aGi~~~~k~~ 159 (285)
.+++ .++++.+.+++++++.++++|+++|.||.+ +.||.++++||.+|++. .||+||+|+|+||+++|++.++|..
T Consensus 101 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~ 177 (244)
T cd00640 101 LVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKEL 177 (244)
T ss_pred EECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHh
Confidence 9997 478888999999988668999999999988 78999999999999976 5999999999999999999999999
Q ss_pred CCCcEEEEEecCCCCccCCCCCCCccccccCCCCCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHH
Q 023227 160 NPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 239 (285)
Q Consensus 160 ~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa 239 (285)
+|.+|||+|+| +++.|+|+|+++++++|++++|+++||++|+++++
T Consensus 178 ~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa 223 (244)
T cd00640 178 LPNVKVIGVEP----------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAA 223 (244)
T ss_pred CCCCEEEEEee----------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHH
Confidence 99999999987 68999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEEecC
Q 023227 240 AIEIAKRPENAGKLIVVIFPS 260 (285)
Q Consensus 240 ~~~~~~~~~~~~~~vv~i~~~ 260 (285)
++++.++. .++++||+++|+
T Consensus 224 ~~~~~~~~-~~~~~vv~v~tg 243 (244)
T cd00640 224 ALKLAKKL-GKGKTVVVILTG 243 (244)
T ss_pred HHHHHHhc-CCCCEEEEEeCC
Confidence 99998776 467889999843
No 58
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=2.4e-48 Score=348.22 Aligned_cols=257 Identities=23% Similarity=0.248 Sum_probs=214.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
++|||||||||++.+++.++.++|. .+|+++|+||||+|+|++|+.+|++|+||+|++ +++.|+..++.+||+|
T Consensus 47 ~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~V 121 (328)
T TIGR00260 47 FHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEV 121 (328)
T ss_pred ccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEE
Confidence 5799999999999999999998886 689999999999999999999999999999998 8999999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCC-CCchHhHHhchHHHHHhhhCC-CCCEEEEccCCcccHHHHHHHHH
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLK 157 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~EI~~q~~~-~~d~iv~~vG~Gg~~aGi~~~~k 157 (285)
+.+++ +++++.+.+++++++. ++++++++++ |.+ +.||.++++||++|+++ .||+||+|+|+||+++|++.+++
T Consensus 122 i~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~ 197 (328)
T TIGR00260 122 VAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFK 197 (328)
T ss_pred EEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 99996 6788888899988875 4566655422 776 78999999999999974 79999999999999999999999
Q ss_pred hhCC-----CcEEEEEecCCCCccC-----CCCCC-----CccccccCCCCCccC------cccccCCeEEEeCHHHHHH
Q 023227 158 EKNP-----NIKLYGIEPTESPVLS-----GGKPG-----PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIE 216 (285)
Q Consensus 158 ~~~~-----~~~vigv~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~d~~~~v~d~e~~~ 216 (285)
+... .+++++|||.+++++. .++.. .+..++++.+. |.. +.+++.|+.+.|+|+|+++
T Consensus 198 ~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~ 276 (328)
T TIGR00260 198 EKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILE 276 (328)
T ss_pred HHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHH
Confidence 8510 2399999999995442 23222 22334443332 222 2346789999999999999
Q ss_pred HHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCCcc
Q 023227 217 TAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 267 (285)
Q Consensus 217 a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 267 (285)
+++.|++++|+++||++|+++++++++.+++. .++++||+++|.+|.|+.|
T Consensus 277 a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 277 AIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 99999999999999999999999999887654 4678999999888888754
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.9e-48 Score=349.20 Aligned_cols=267 Identities=18% Similarity=0.200 Sum_probs=217.4
Q ss_pred CCCCCchhHHHHHHHHHHHHc----------------CCCCC--CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 023227 3 EPCSSVKDRIGYSMISDAEAK----------------GLITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 64 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~----------------g~~~~--g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~ 64 (285)
+||||||+|++.+.+..+.++ +.+++ +.++|+++|+||||+|+|++|+.+|++|+||||+++
T Consensus 49 ~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~ 128 (376)
T TIGR01747 49 FGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS 128 (376)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 369999999999999887553 12211 236899999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC--CCchHhHHhchHHHHHhhhCC---
Q 023227 65 SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN--PANPKIHYETTGPELWKGSGG--- 134 (285)
Q Consensus 65 ~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~EI~~q~~~--- 134 (285)
++.|+..++.+||+|+.+++ +++++.+.+++++++. ++++++ +|++ |.. +.||+|+++||++|++.
T Consensus 129 ~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~ 204 (376)
T TIGR01747 129 AQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGS 204 (376)
T ss_pred CHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999996 6788888999988886 688876 4655 433 78999999999999962
Q ss_pred -CCCEEEEccCCcccHHHHHHHHHhhCC--CcEEEEEecCCCCccC----C--CCCC------CccccccCCCC---Ccc
Q 023227 135 -RIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGIEPTESPVLS----G--GKPG------PHKIQGIGAGF---VPG 196 (285)
Q Consensus 135 -~~d~iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigv~~~~~~~~~----~--~~~~------~~~~~gl~~~~---~~~ 196 (285)
.||+||+|+|+||+++|++.++++..+ .++||+|||++++++. . +++. .+.+++|+++. .++
T Consensus 205 ~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~ 284 (376)
T TIGR01747 205 VTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISW 284 (376)
T ss_pred CCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHH
Confidence 699999999999999999999987743 3699999999998774 2 3321 24556776643 245
Q ss_pred CcccccCCeEEEeCHHHHHHHHHHHHHhc----CCeeehhHHHHHHHHHHHH---------hcCC-CCCCEEEEEecCCC
Q 023227 197 VLEVNIIDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIEIA---------KRPE-NAGKLIVVIFPSFG 262 (285)
Q Consensus 197 ~~~~~~~d~~~~v~d~e~~~a~~~l~~~~----gi~~~p~~g~a~aa~~~~~---------~~~~-~~~~~vv~i~~~gG 262 (285)
.+.++..|.++.|+|+|+.++++.|++.. ++++||++|++++++...+ +++. .++++||+|+ |||
T Consensus 285 ~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~g 363 (376)
T TIGR01747 285 EILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEG 363 (376)
T ss_pred HHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCC
Confidence 56688899999999999999999999855 5999999999998888433 3333 3578888888 999
Q ss_pred CCCcchhhcHHHHH
Q 023227 263 ERYLSSVLFESVRK 276 (285)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (285)
+.+ ...|.+.++
T Consensus 364 n~d--~~~~~~~~~ 375 (376)
T TIGR01747 364 DTD--PDHYREIVW 375 (376)
T ss_pred CCC--HHHHHHHhc
Confidence 954 446777664
No 60
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.2e-48 Score=353.58 Aligned_cols=258 Identities=17% Similarity=0.082 Sum_probs=213.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 2 MEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 2 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+|||||||||++.+++..+.+.|. +.|+++|+||||+|+|++|+++|++|+||||++++..+...++.+|++|+.
T Consensus 94 ~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~ 168 (398)
T TIGR03844 94 FMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVT 168 (398)
T ss_pred cCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEE
Confidence 799999999999999999999885 789999999999999999999999999999998654333335789999999
Q ss_pred eCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC-
Q 023227 82 TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN- 160 (285)
Q Consensus 82 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~- 160 (285)
+++ +|+++.+.+++++++. +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++.
T Consensus 169 v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~ 244 (398)
T TIGR03844 169 VDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIE 244 (398)
T ss_pred CCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHH
Confidence 986 6889999999998875 6655566678876 8999999999999997459999999999988999999988842
Q ss_pred ------CCcEEEEEecCCCCccC----CCCCC---------------CccccccCCCCCcc-------CcccccCCeEEE
Q 023227 161 ------PNIKLYGIEPTESPVLS----GGKPG---------------PHKIQGIGAGFVPG-------VLEVNIIDEVVQ 208 (285)
Q Consensus 161 ------~~~~vigv~~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~d~~~~ 208 (285)
..+|+++||+++++++. .++.. .+..+++..+..+. ...++..+.++.
T Consensus 245 ~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~ 324 (398)
T TIGR03844 245 DGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYG 324 (398)
T ss_pred cCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEE
Confidence 23688999999998663 23221 12234553332222 223577899999
Q ss_pred eCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCC-CCCEEEEEecCCCCCCcch
Q 023227 209 VSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 209 v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~~ 268 (285)
|+|+|+.++++.|++++|+++||++|+++|+++++.+++.. ++++||+++|++|.|++..
T Consensus 325 Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 325 VSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred ECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 99999999999999999999999999999999999887653 7889999998889988753
No 61
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-47 Score=346.00 Aligned_cols=261 Identities=24% Similarity=0.249 Sum_probs=204.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFG 76 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~---~~~~~~~~~~G 76 (285)
++|||||||+|.+..++..+.++|. +.+++ +|+||||+|+|++|+.+|++|+||+|+..+ +.|+.+++.+|
T Consensus 58 ~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~G 132 (365)
T cd06446 58 DLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLG 132 (365)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCC
Confidence 4799999999999999999999887 45565 689999999999999999999999998643 35788999999
Q ss_pred CEEEEeCCCC-ChHHHHHHHHH-HHHhC-CCeEecCCCC----CCCchHhHHhchHHHHHhhhC----CCCCEEEEccCC
Q 023227 77 AELVLTDPAK-GMKGAVQKAEE-ILAKT-PNAYMLQQFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGT 145 (285)
Q Consensus 77 a~v~~~~~~~-~~~~~~~~a~~-~~~~~-~~~~~~~~~~----~~~~~~~g~~t~~~EI~~q~~----~~~d~iv~~vG~ 145 (285)
|+|+.++... .++++...+.+ ..++. ..+|+++++. ++.+++.||+|+++||++|+. ..||+||+|+|+
T Consensus 133 AeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~ 212 (365)
T cd06446 133 AEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGG 212 (365)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 9999998632 34555544433 34432 2345444432 234568899999999999996 269999999999
Q ss_pred cccHHHHHHHHHhhCCCcEEEEEecCCCCccCCC--------CCC--------------------CccccccCCCC-Cc-
Q 023227 146 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG--------KPG--------------------PHKIQGIGAGF-VP- 195 (285)
Q Consensus 146 Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~~-~~- 195 (285)
|||++|++++++. .+++|||+|||.+++.+... ... .+.+++++... .+
T Consensus 213 GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~ 291 (365)
T cd06446 213 GSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPE 291 (365)
T ss_pred cHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHH
Confidence 9999999998877 46899999999998776421 110 01122343211 11
Q ss_pred -cCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 196 -GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 196 -~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
+.+..+++|+++.|+|+|++++++.|++++||++||++|+++++++++.++. .++++||+|+|++|+||+++
T Consensus 292 ~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 292 HAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 1134567899999999999999999999999999999999999999998775 46789999998889999986
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=3.1e-47 Score=346.19 Aligned_cols=270 Identities=18% Similarity=0.182 Sum_probs=212.9
Q ss_pred CC-CCCCchhHHHHHHHHHHHH--cCCC--------------C--CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 2 ME-PCSSVKDRIGYSMISDAEA--KGLI--------------T--PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 2 ~n-ptGS~K~R~a~~~~~~a~~--~g~~--------------~--~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
+| ||||||+||+.+.+..+.+ .|.. + ....+||++|+||||+++|++|+++|++|+||||+
T Consensus 66 ~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~ 145 (396)
T TIGR03528 66 YRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPK 145 (396)
T ss_pred CCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeC
Confidence 35 6999999999999987532 2310 0 01238999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCCC-CchHhHHhchHHHHHhhhC---
Q 023227 63 SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFENP-ANPKIHYETTGPELWKGSG--- 133 (285)
Q Consensus 63 ~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~-~~~~~g~~t~~~EI~~q~~--- 133 (285)
++++.|+..++.+||+|+.++. +++++.+.+++++++. ++++++ +|+|. ...+.||+|+++||++|++
T Consensus 146 ~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~ 222 (396)
T TIGR03528 146 GSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQG 222 (396)
T ss_pred CCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999986 6788889999998886 788875 57652 2236899999999999996
Q ss_pred -CCCCEEEEccCCcccHHHHHHHHHhh-CCC-cEEEEEecCCCCccCC------CCCC------CccccccCCCC---Cc
Q 023227 134 -GRIDALVSGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG------GKPG------PHKIQGIGAGF---VP 195 (285)
Q Consensus 134 -~~~d~iv~~vG~Gg~~aGi~~~~k~~-~~~-~~vigv~~~~~~~~~~------~~~~------~~~~~gl~~~~---~~ 195 (285)
..||+||+|+|+||+++|++.++++. .+. +|||+|||++++++.. +++. .+..++++.+. .+
T Consensus 223 ~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~ 302 (396)
T TIGR03528 223 VEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIG 302 (396)
T ss_pred CCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHH
Confidence 26999999999999999999999554 444 5999999999987642 2221 23446665432 23
Q ss_pred cCcccccCCeEEEeCHHHHHHHHHHHHH----hcCCeeehhHHHHHHHHHHHH---------hcCC-CCCCEEEEEecCC
Q 023227 196 GVLEVNIIDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIA---------KRPE-NAGKLIVVIFPSF 261 (285)
Q Consensus 196 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~----~~gi~~~p~~g~a~aa~~~~~---------~~~~-~~~~~vv~i~~~g 261 (285)
+.+.++++|+++.|+|+|+.++++.|++ ++++++||++|+++|++..++ +++. .++++||+|+ ||
T Consensus 303 ~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tg 381 (396)
T TIGR03528 303 WEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TE 381 (396)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CC
Confidence 4455788999999999999999999998 579999999999996663322 2222 3578999999 99
Q ss_pred CCCCcchhhcHHHHHh
Q 023227 262 GERYLSSVLFESVRKE 277 (285)
Q Consensus 262 G~~~~~~~~~~~~~~~ 277 (285)
||.+. ..|.+++++
T Consensus 382 gn~d~--~~~~~~~~~ 395 (396)
T TIGR03528 382 GDTDP--DNYRKIVWQ 395 (396)
T ss_pred CCCCH--HHHHHHhcC
Confidence 99554 467777654
No 63
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2e-46 Score=339.52 Aligned_cols=263 Identities=23% Similarity=0.229 Sum_probs=207.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH---HHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~---~~~~~~~~~Ga 77 (285)
.+|||||||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+..++ .|+.+|+.+||
T Consensus 86 dlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GA 161 (402)
T PRK13028 86 DLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGA 161 (402)
T ss_pred CCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCC
Confidence 4799999999999999999999887 2456678999999999999999999999999986443 57889999999
Q ss_pred EEEEeCC-CCChHHHHHHHHH-HHHhCCCeEecC-CCC----CCCchHhHHhchHHHHHhhhC----CCCCEEEEccCCc
Q 023227 78 ELVLTDP-AKGMKGAVQKAEE-ILAKTPNAYMLQ-QFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTG 146 (285)
Q Consensus 78 ~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~----~~~~~~~g~~t~~~EI~~q~~----~~~d~iv~~vG~G 146 (285)
+|+.++. ...++++.+.+.+ ++++.++.+|+. +.. .|.++..||++++.||.+|+. ..||+||+|||+|
T Consensus 162 eVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgG 241 (402)
T PRK13028 162 EVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGG 241 (402)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCch
Confidence 9999984 3467788777744 555533555552 221 233445699999999999873 3699999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCC--------CCccCCCCCC--------------------CccccccCCCC-CccC
Q 023227 147 GTITGAGKFLKEKNPNIKLYGIEPTE--------SPVLSGGKPG--------------------PHKIQGIGAGF-VPGV 197 (285)
Q Consensus 147 g~~aGi~~~~k~~~~~~~vigv~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~-~~~~ 197 (285)
|+++|++.+|++ .|++|||||||.+ ++++..+++. .+...+|..+. .|..
T Consensus 242 g~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~ 320 (402)
T PRK13028 242 SNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEH 320 (402)
T ss_pred HHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHH
Confidence 999999999986 4899999999998 5666544431 11123333211 1211
Q ss_pred --cccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchh
Q 023227 198 --LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 198 --~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 269 (285)
+.....++++.|+|+|++++++.|+++|||++++++|++++++++++++. .++++||+++|++|+||++++
T Consensus 321 ~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 321 AYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred HHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 22345678999999999999999999999999999999999999987653 468899999977799999863
No 64
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-46 Score=342.07 Aligned_cols=262 Identities=20% Similarity=0.240 Sum_probs=203.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCH--HHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~--~~~~~~~~~Ga 77 (285)
++|||||||+|.+.+.+..+.+.|. ...|+++|+||||+|+|++|+++|++|+||||+. .+. .++.+|+.+||
T Consensus 74 ~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA 149 (385)
T TIGR00263 74 DLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGA 149 (385)
T ss_pred CCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCC
Confidence 4799999999999999999988885 2345568999999999999999999999999985 443 57889999999
Q ss_pred EEEEeCCC-CChHHHH-HHHHHHHHhCCCeEec-CCCCC----CCchHhHHhchHHHHHhhhC----CCCCEEEEccCCc
Q 023227 78 ELVLTDPA-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTG 146 (285)
Q Consensus 78 ~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~q~~----~~~d~iv~~vG~G 146 (285)
+|+.++.. ..++++. +.+++++++.++.+|+ +++.+ |.++..||+|+++||++|+. ..||+||+|+|+|
T Consensus 150 ~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~G 229 (385)
T TIGR00263 150 KVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGG 229 (385)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCch
Confidence 99999853 3466654 4455556664455555 44443 24446899999999999973 2589999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCCCC--------ccCCCCCC--------------------CccccccCCCCC-c--
Q 023227 147 GTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P-- 195 (285)
Q Consensus 147 g~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~-- 195 (285)
|+++|++.++.. .|++|||||||+++. .+..+.+. .+...+++.... |
T Consensus 230 g~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~ 308 (385)
T TIGR00263 230 SNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEH 308 (385)
T ss_pred HHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHH
Confidence 999999998855 699999999999862 23223221 011123322111 1
Q ss_pred cCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 196 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 196 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
+.+.....|+++.|+|+|++++++.|+++|||+++|++|++++++++++++. .++++||+++|++|++|+++
T Consensus 309 ~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 309 AYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred HHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHH
Confidence 1223455788999999999999999999999999999999999999987653 36889999998889999886
No 65
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=313.24 Aligned_cols=274 Identities=38% Similarity=0.595 Sum_probs=234.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
|+||.||.|||.|.+++..|.+.|++-|| .+|++.++||+|+++|..|+.+|++|+|+||.+.+.+|.+.++.+||+|.
T Consensus 72 f~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~ 150 (391)
T KOG1481|consen 72 FLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVH 150 (391)
T ss_pred ccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceee
Confidence 78999999999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC--ChHHHHHHHHHHHHhCC------CeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHH
Q 023227 81 LTDPAK--GMKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGA 152 (285)
Q Consensus 81 ~~~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi 152 (285)
.|.+.. +-+.-...+++.+++.+ ..++.+||+|++|+..||.++|+||+.|.++.+|++++.+|+|||++|+
T Consensus 151 rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGV 230 (391)
T KOG1481|consen 151 RVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGV 230 (391)
T ss_pred ecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHH
Confidence 988632 11233344444444332 2367899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC-cEEEEEecCCCCccC-------------CC----CCCCccccccCCCCCccCc--ccccCCeEEEeCHH
Q 023227 153 GKFLKEKNPN-IKLYGIEPTESPVLS-------------GG----KPGPHKIQGIGAGFVPGVL--EVNIIDEVVQVSSD 212 (285)
Q Consensus 153 ~~~~k~~~~~-~~vigv~~~~~~~~~-------------~~----~~~~~~~~gl~~~~~~~~~--~~~~~d~~~~v~d~ 212 (285)
.+++|+..+. ++++-.+|-++.... .| .+..+..+|+|...++.++ ..+++|+.+.|+|+
T Consensus 231 skyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~De 310 (391)
T KOG1481|consen 231 SKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDE 310 (391)
T ss_pred HHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChH
Confidence 9999999886 899999999984321 11 1234556788877666554 47789999999999
Q ss_pred HHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHHHH
Q 023227 213 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 276 (285)
Q Consensus 213 e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 276 (285)
+++++.+.|..++|++++.+++.+..+++++++.. .+|++||.|+||.|.++++..+.+.+..
T Consensus 311 qai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~ 373 (391)
T KOG1481|consen 311 QAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLE 373 (391)
T ss_pred HHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHh
Confidence 99999999999999999999999999999998876 5999999999999999998744444433
No 66
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=5.7e-47 Score=336.14 Aligned_cols=255 Identities=21% Similarity=0.233 Sum_probs=204.2
Q ss_pred CCCCC---CCchhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHHcCCeEEEEecCCCC--------HH
Q 023227 1 MMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LE 67 (285)
Q Consensus 1 ~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~ 67 (285)
++||+ ||||+|++.+++.+++++|. ++|+++ |+||||+|+|++|+.+|++|+||||++.+ ..
T Consensus 25 ~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~ 99 (307)
T cd06449 25 DCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVG 99 (307)
T ss_pred cccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccc
Confidence 47999 56699999999999999887 678988 68999999999999999999999999876 46
Q ss_pred HHHHHHHcCCEEEEeCCCCC--hHHHHHHH-HHHHHhCCCeEe-cCCCC-CCCchHhHHhchHHHHHhhhCC---CCCEE
Q 023227 68 RRIILRAFGAELVLTDPAKG--MKGAVQKA-EEILAKTPNAYM-LQQFE-NPANPKIHYETTGPELWKGSGG---RIDAL 139 (285)
Q Consensus 68 ~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a-~~~~~~~~~~~~-~~~~~-~~~~~~~g~~t~~~EI~~q~~~---~~d~i 139 (285)
|+.+++.+||+|+.++.... ...+.+.+ +++.++.+..|+ .+++. ||.+ +.||.++++||++|++. .||+|
T Consensus 100 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~v 178 (307)
T cd06449 100 NILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSI 178 (307)
T ss_pred cHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 89999999999999986321 12223333 333333323454 45553 8888 78999999999999964 69999
Q ss_pred EEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCccCCCCCC---CccccccC--CCCCccCcccccCCeEEEeCHHHH
Q 023227 140 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQGIG--AGFVPGVLEVNIIDEVVQVSSDEA 214 (285)
Q Consensus 140 v~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~---~~~~~gl~--~~~~~~~~~~~~~d~~~~v~d~e~ 214 (285)
|+|+|||||++|+++++|+.+|++|||+|+|.+++.+...+.. ...+.+++ .+..+..++.+++|+++.|+|+|+
T Consensus 179 v~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~ 258 (307)
T cd06449 179 VVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDET 258 (307)
T ss_pred EEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHH
Confidence 9999999999999999999999999999999998765321110 01222222 223355667888999999999999
Q ss_pred HHHHHHHHHhcCCeeeh-hHHHHHHHHHHHHhcCC-CCCCEEEEEecCCC
Q 023227 215 IETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFG 262 (285)
Q Consensus 215 ~~a~~~l~~~~gi~~~p-~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG 262 (285)
++++++|++++||++|| |+|++++++.++++++. .++++||+|| |||
T Consensus 259 ~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 259 IEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred HHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 99999999999999999 89999999999988764 4678999999 776
No 67
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=6.2e-47 Score=336.68 Aligned_cols=256 Identities=18% Similarity=0.128 Sum_probs=203.8
Q ss_pred CCCCC--CCchhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHc
Q 023227 1 MMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAF 75 (285)
Q Consensus 1 ~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~~~~~~~~~~ 75 (285)
++||| ||||+|++.+++..++++|. ++||++ |+||||+|+|++|+.+|+++++|||+.. +..+...++.+
T Consensus 30 ~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~ 104 (311)
T TIGR01275 30 DLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLM 104 (311)
T ss_pred cCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHc
Confidence 47998 99999999999999999987 689998 5699999999999999999999999965 45567778999
Q ss_pred CCEEEEeCCCCChHHHHHHHHHHHH----hCC-CeEecCCCCCCCchHhHHhchHHHHHhhhCC--CCCEEEEccCCccc
Q 023227 76 GAELVLTDPAKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGT 148 (285)
Q Consensus 76 Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~--~~d~iv~~vG~Gg~ 148 (285)
||+|+.+++. ++.+..+.++++++ +.+ .++++.++.||.+ ..|+.++++||++|++. .||+||+|+|||||
T Consensus 105 Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt 182 (311)
T TIGR01275 105 GAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGT 182 (311)
T ss_pred CCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHH
Confidence 9999999852 33444444444433 322 3456677888887 67777899999999963 69999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCCccCCCC---CCCccccccCCC-CCccCcccccCCeEEEeCHHHHHHHHHHHHHh
Q 023227 149 ITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALK 224 (285)
Q Consensus 149 ~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~ 224 (285)
++|++++||+.+|+++||||+|..+.+..... ...+.+++++.+ ...+....++.+.++.|+|+|+++++++|+++
T Consensus 183 ~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~ 262 (311)
T TIGR01275 183 IAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASR 262 (311)
T ss_pred HHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987653211100 112233455543 22334456778889999999999999999999
Q ss_pred cCCeeeh-hHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 023227 225 EGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 264 (285)
Q Consensus 225 ~gi~~~p-~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 264 (285)
+||++|| |+|++++++++++++.+.++++||+|+ |||+.
T Consensus 263 ~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~-tGG~~ 302 (311)
T TIGR01275 263 EGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIH-TGGIS 302 (311)
T ss_pred hCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEE-CCCcc
Confidence 9999999 799999999998877655677899999 88874
No 68
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.8e-45 Score=335.93 Aligned_cols=265 Identities=22% Similarity=0.273 Sum_probs=205.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFG 76 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~~~~~~~~~G 76 (285)
++|||||||+|++.+++..+.++|. +.+++ +|+||||+|+|++|+.+|++|+||||+.. ++.|+..|+.+|
T Consensus 93 ~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~G 167 (419)
T TIGR01415 93 SVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYG 167 (419)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcC
Confidence 4799999999999999999999997 45665 58899999999999999999999999854 567899999999
Q ss_pred CEEEEeCCCCChHH------------------HHHHHHHHHHhCC-CeEecCCCCCCCchHhHHhchHHHHHhhhCC---
Q 023227 77 AELVLTDPAKGMKG------------------AVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--- 134 (285)
Q Consensus 77 a~v~~~~~~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~--- 134 (285)
|+|+.++.+ +.+ +...+.+.+.+.+ ..|+++++.|+ ...||.++++||++|++.
T Consensus 168 A~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~ 243 (419)
T TIGR01415 168 AEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGE 243 (419)
T ss_pred CEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCC
Confidence 999999863 222 2455666665543 45666666553 467999999999999963
Q ss_pred CCCEEEEccCCcccHHHHHHHHHhh----CCCcEEEEEecCCCCccCCCCC----------CC-ccccccCCCCCccCc-
Q 023227 135 RIDALVSGIGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVL- 198 (285)
Q Consensus 135 ~~d~iv~~vG~Gg~~aGi~~~~k~~----~~~~~vigv~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~- 198 (285)
.||+||+|+|+||+++|++.+|++. .+++|||+|||++++.+..+.. .+ ..+.+++.+.+|...
T Consensus 244 ~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~ 323 (419)
T TIGR01415 244 DPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIH 323 (419)
T ss_pred CCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCccee
Confidence 4999999999999999999888332 3589999999999988765431 11 223455555444322
Q ss_pred ----------------ccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCC--EEEEEecC
Q 023227 199 ----------------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVVIFPS 260 (285)
Q Consensus 199 ----------------~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~--~vv~i~~~ 260 (285)
..+.+++.+.|+|+|++++++.|+++|||+++|++|++++++++++++....++ +||+++++
T Consensus 324 a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG 403 (419)
T TIGR01415 324 AGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSG 403 (419)
T ss_pred ccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCC
Confidence 123445788999999999999999999999999999999999998877653233 55566633
Q ss_pred CCCCCcchhhcHHHHH
Q 023227 261 FGERYLSSVLFESVRK 276 (285)
Q Consensus 261 gG~~~~~~~~~~~~~~ 276 (285)
+|+++ ...|++++.
T Consensus 404 ~G~~d--~~~y~~~~~ 417 (419)
T TIGR01415 404 HGLLD--LKAYAKYLH 417 (419)
T ss_pred CCcCC--HHHHHHHhc
Confidence 37755 446777653
No 69
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.6e-45 Score=333.12 Aligned_cols=262 Identities=23% Similarity=0.270 Sum_probs=201.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-C--HHHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S--LERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~--~~~~~~~~~~Ga 77 (285)
.+|||||||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. + ..|+.+|+.+||
T Consensus 82 dlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA 157 (397)
T PRK04346 82 DLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGA 157 (397)
T ss_pred CCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCC
Confidence 4799999999999999999999887 24566689999999999999999999999999853 3 357889999999
Q ss_pred EEEEeCC-CCChHHHHHHHH-HHHHhCCCeEec-CCCCC----CCchHhHHhchHHHHHhhhC----CCCCEEEEccCCc
Q 023227 78 ELVLTDP-AKGMKGAVQKAE-EILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTG 146 (285)
Q Consensus 78 ~v~~~~~-~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~q~~----~~~d~iv~~vG~G 146 (285)
+|+.++. ...+.++.+.+. ++..+.++.+|+ .+..+ |.+...||++++.||.+|+. ..||+||+|||+|
T Consensus 158 ~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgG 237 (397)
T PRK04346 158 EVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237 (397)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 9999985 335665655554 455553344444 33332 34435699999999999984 3699999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCCCC--------ccCCCCCC--------------------CccccccCCCCC-c--
Q 023227 147 GTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P-- 195 (285)
Q Consensus 147 g~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~-- 195 (285)
|+++|++.+|++ .|++|||||||.++. ++..+++. .....+|..+-+ |
T Consensus 238 g~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~ 316 (397)
T PRK04346 238 SNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEH 316 (397)
T ss_pred HhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHH
Confidence 999999999976 789999999999862 22223221 011123322111 1
Q ss_pred cCcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 196 GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 196 ~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
..+.....++++.|+|+|++++++.|++.|||+++++++.|++++++++++. .++++||+++|++|+||+++
T Consensus 317 ~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~ 388 (397)
T PRK04346 317 AYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFT 388 (397)
T ss_pred HHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHH
Confidence 1123455678999999999999999999999999999999999999987653 36789999997779999986
No 70
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.1e-45 Score=332.85 Aligned_cols=263 Identities=20% Similarity=0.250 Sum_probs=203.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~~~~~~~~~Ga 77 (285)
++|||||||+|.+...+..|++.|+ ...|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.+||
T Consensus 95 ~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA 170 (410)
T PLN02618 95 DLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGA 170 (410)
T ss_pred CCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCC
Confidence 4799999999999999999988886 23444567899999999999999999999999853 3567889999999
Q ss_pred EEEEeCC-CCChHHHH-HHHHHHHHhCCCeEec-CCCC--C--CCchHhHHhchHHHHHhhh----CCCCCEEEEccCCc
Q 023227 78 ELVLTDP-AKGMKGAV-QKAEEILAKTPNAYML-QQFE--N--PANPKIHYETTGPELWKGS----GGRIDALVSGIGTG 146 (285)
Q Consensus 78 ~v~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~-~~~~--~--~~~~~~g~~t~~~EI~~q~----~~~~d~iv~~vG~G 146 (285)
+|+.++. ...+.++. +.+++++++..+.+|+ .+.. + |.....+++++|.||.+|+ +..||+||+|||+|
T Consensus 171 ~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgG 250 (410)
T PLN02618 171 EVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGG 250 (410)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 9999954 34677776 4445677653344454 3322 2 2233579999999997776 34699999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCCCC--------ccCCCCCC--------------------CccccccCCCCC-cc-
Q 023227 147 GTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-PG- 196 (285)
Q Consensus 147 g~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~~- 196 (285)
|+++|++.+|+. .|++|||||||.++. ++..+++. .+...+|..+.+ |.
T Consensus 251 g~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~ 329 (410)
T PLN02618 251 SNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEH 329 (410)
T ss_pred HHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHH
Confidence 999999999975 689999999999972 23333221 011123322111 11
Q ss_pred -CcccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchh
Q 023227 197 -VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 197 -~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 269 (285)
.+.....|+++.|+|+|+++++++|+++|||+++++|+++++++++++++. .++++||+++++.|+||++++
T Consensus 330 ~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 330 SFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred HHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 122346789999999999999999999999999999999999999998764 468899999999999999974
No 71
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=4.1e-45 Score=334.01 Aligned_cols=267 Identities=22% Similarity=0.266 Sum_probs=206.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFG 76 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~---~~~~~~~~~~~~G 76 (285)
++|||||||+|++..++..+.++|. +.+++ +|+||||.|+|++|+.+|++|+||||+. .++.|+.+|+.+|
T Consensus 102 ~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~G 176 (427)
T PRK12391 102 GVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYG 176 (427)
T ss_pred CCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCC
Confidence 4799999999999999999999997 45665 5789999999999999999999999974 3567899999999
Q ss_pred CEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhC---CCCC
Q 023227 77 AELVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRID 137 (285)
Q Consensus 77 a~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~---~~~d 137 (285)
|+|+.++...+ ...+.+.+.+++.+.++.+|+.... ..+.+.||.++++||++|+. ..||
T Consensus 177 A~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD 255 (427)
T PRK12391 177 AEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSV-LNHVLLHQTVIGLEAKKQLELAGEYPD 255 (427)
T ss_pred CEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCC-CcHHHhhHHHHHHHHHHHHHhcCCCCC
Confidence 99999985311 1114556666666654544543332 33457899999999999995 3699
Q ss_pred EEEEccCCcccHHHHHHHHHh---hC-CCcEEEEEecCCCCccCCCCC----------CC-ccccccCCCCCccCcc---
Q 023227 138 ALVSGIGTGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVLE--- 199 (285)
Q Consensus 138 ~iv~~vG~Gg~~aGi~~~~k~---~~-~~~~vigv~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~~--- 199 (285)
+||+|+|+||+++|++.+|.. .+ +++|||+|||++++++..+.. .+ ..+.+++.+.+|..+.
T Consensus 256 ~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~g 335 (427)
T PRK12391 256 VVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGG 335 (427)
T ss_pred EEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccc
Confidence 999999999999999987732 34 889999999999988865421 11 2345666655444331
Q ss_pred --------------cccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCC
Q 023227 200 --------------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE--NAGKLIVVIFPSFGE 263 (285)
Q Consensus 200 --------------~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~--~~~~~vv~i~~~gG~ 263 (285)
...+++.+.|+|+|++++++.|+++|||+++|++|++++++++++++.. .++++||+++|+.|+
T Consensus 336 l~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~ 415 (427)
T PRK12391 336 LRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGL 415 (427)
T ss_pred cccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCC
Confidence 2234478999999999999999999999999999999999999887643 246777777744477
Q ss_pred CCcchhhcHHHH
Q 023227 264 RYLSSVLFESVR 275 (285)
Q Consensus 264 ~~~~~~~~~~~~ 275 (285)
+ |...|++|+
T Consensus 416 ~--d~~~y~~~l 425 (427)
T PRK12391 416 L--DLAAYDAYL 425 (427)
T ss_pred C--CHHHHHHHh
Confidence 4 555688765
No 72
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=7.3e-45 Score=346.01 Aligned_cols=264 Identities=21% Similarity=0.249 Sum_probs=208.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---~~~~~~~~~~~~Ga 77 (285)
++|||||||+|++.+++..+++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||
T Consensus 355 ~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGA 430 (695)
T PRK13802 355 DLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGA 430 (695)
T ss_pred cCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCC
Confidence 4799999999999999999999998 2578899999999999999999999999999985 46789999999999
Q ss_pred EEEEeCCC-CChHHHHHHH-HHHHHhCC-CeEecCCCCCC----CchHhHHhchHHHHHhhhCC-----CCCEEEEccCC
Q 023227 78 ELVLTDPA-KGMKGAVQKA-EEILAKTP-NAYMLQQFENP----ANPKIHYETTGPELWKGSGG-----RIDALVSGIGT 145 (285)
Q Consensus 78 ~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~EI~~q~~~-----~~d~iv~~vG~ 145 (285)
+|+.++.. ..+.++.+.+ ++++++.+ .+|+++++.|| .++..||+++|.||++|+.. .||+||+|||+
T Consensus 431 eVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGg 510 (695)
T PRK13802 431 EVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGG 510 (695)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCc
Confidence 99999843 3566765444 55666533 45778888654 34468999999999999952 69999999999
Q ss_pred cccHHHHHHHHHhhCCCcEEEEEecCCCCccCC----------CCCC-----------C---------ccccccCC-CCC
Q 023227 146 GGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG----------GKPG-----------P---------HKIQGIGA-GFV 194 (285)
Q Consensus 146 Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----------~~~~-----------~---------~~~~gl~~-~~~ 194 (285)
||+++|++.+|++ .|++|||||||.++..... +.+. . ....||.. +.-
T Consensus 511 Gg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvg 589 (695)
T PRK13802 511 GSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVG 589 (695)
T ss_pred hHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCC
Confidence 9999999999976 6899999999999753321 1100 0 00011110 011
Q ss_pred ccCcccccCCeE--EEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCC---CCCEEEEEecCCCCCCcchh
Q 023227 195 PGVLEVNIIDEV--VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 195 ~~~~~~~~~d~~--~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~---~~~~vv~i~~~gG~~~~~~~ 269 (285)
|..-..+.++++ +.|+|+|++++++.|+++|||+++|+||.|++++++++++... .+++||+++++.|+||+++.
T Consensus 590 p~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 590 PEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred chhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 111123335554 8999999999999999999999999999999999999876532 25689999999999999983
No 73
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.2e-45 Score=331.45 Aligned_cols=257 Identities=17% Similarity=0.191 Sum_probs=205.3
Q ss_pred CCCCC---CCchhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHHcCCeEEEEecCCCC--------HH
Q 023227 1 MMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LE 67 (285)
Q Consensus 1 ~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~ 67 (285)
++||+ ||||+|.+.+++.+++++|. .+|+++ |+||||+|+|++|+++|++|++|++..++ ..
T Consensus 40 ~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~ 114 (337)
T PRK12390 40 DCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVG 114 (337)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccc
Confidence 46887 78899999999999999998 678887 88999999999999999999999877544 23
Q ss_pred HHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCC-eEecCCCCCC-CchHhHHhchHHHHHhh---hCCCCCEEE
Q 023227 68 RRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPN-AYMLQQFENP-ANPKIHYETTGPELWKG---SGGRIDALV 140 (285)
Q Consensus 68 ~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~~g~~t~~~EI~~q---~~~~~d~iv 140 (285)
|+..++.+||+|+.++... .+.++.+.+.+..++..+ .|.++++.++ .....||.++++||++| ++.+||+||
T Consensus 115 ~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vv 194 (337)
T PRK12390 115 NILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIV 194 (337)
T ss_pred cHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 6778999999999998632 233566666666666334 4446555443 22257899999999998 444799999
Q ss_pred EccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCccCCCCC---CCccccccCCCC--Ccc--CcccccCCeEEEeCHHH
Q 023227 141 SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VPG--VLEVNIIDEVVQVSSDE 213 (285)
Q Consensus 141 ~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~---~~~~~~gl~~~~--~~~--~~~~~~~d~~~~v~d~e 213 (285)
+|+|||||++|++.++|+..|++|||+|+|+++..+...+. ..+.+++++.+. .+. .+..+++|++|.|+|+|
T Consensus 195 v~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e 274 (337)
T PRK12390 195 VCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEG 274 (337)
T ss_pred EecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHH
Confidence 99999999999999999999999999999999876543211 122334444332 222 35578899999999999
Q ss_pred HHHHHHHHHHhcCCeeeh-hHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCC
Q 023227 214 AIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGE 263 (285)
Q Consensus 214 ~~~a~~~l~~~~gi~~~p-~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~ 263 (285)
++++++.|++++||++|| |||+++++++++++++. .++++||++| |||.
T Consensus 275 ~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 275 TLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 999999999999999999 69999999999998876 4777999999 8885
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.1e-45 Score=330.88 Aligned_cols=258 Identities=22% Similarity=0.254 Sum_probs=207.4
Q ss_pred CCCCC--CCchhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CChHHHHHHHHHHHcCCeEEEEecCCCCH--------HH
Q 023227 1 MMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ER 68 (285)
Q Consensus 1 ~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~a~A~~a~~~G~~~~iv~p~~~~~--------~~ 68 (285)
++||+ ||||+|++.+++.++.++|. ++||++| +||||+|+|++|+.+|++|+||||+..++ .|
T Consensus 38 ~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~ 112 (331)
T PRK03910 38 DLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGN 112 (331)
T ss_pred cCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCc
Confidence 47997 59999999999999998886 6788874 49999999999999999999999998775 45
Q ss_pred HHHHHHcCCEEEEeCCCCChHH-HHHHHHHHHHhCCCeE-ecCCCCCCCchHhHHhchHHHHHhhhCC---CCCEEEEcc
Q 023227 69 RIILRAFGAELVLTDPAKGMKG-AVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGI 143 (285)
Q Consensus 69 ~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~EI~~q~~~---~~d~iv~~v 143 (285)
+..++.+||+|+.++...+..+ +.+.++++.++.+..| ++.++.|+.+ ..||.+++.||++|++. .||+||+|+
T Consensus 113 ~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~v 191 (331)
T PRK03910 113 VLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVAS 191 (331)
T ss_pred HHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 6899999999999986422222 3455666666643334 4567788888 67889999999999963 699999999
Q ss_pred CCcccHHHHHHHHHhhCCCcEEEEEecCCCCccCCCCC---CCccccccCCC--CC--ccCcccccCCeEEEeCHHHHHH
Q 023227 144 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--FV--PGVLEVNIIDEVVQVSSDEAIE 216 (285)
Q Consensus 144 G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~---~~~~~~gl~~~--~~--~~~~~~~~~d~~~~v~d~e~~~ 216 (285)
|||||++|++++||+.+|+++||||||++++.+....+ .....++++.+ .. .+.+..+++|+++.|+|+|+++
T Consensus 192 GtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~ 271 (331)
T PRK03910 192 GSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLE 271 (331)
T ss_pred CcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999998865432111 01122334332 11 2245678899999999999999
Q ss_pred HHHHHHHhcCCeeeh-hHHHHHHHHHHHHhcCCC-CCCEEEEEecCCCCCC
Q 023227 217 TAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERY 265 (285)
Q Consensus 217 a~~~l~~~~gi~~~p-~~g~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~ 265 (285)
++++|++++||++|| |+|+++++++++++++.. ++++||+|+ |||+.+
T Consensus 272 ~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~~ 321 (331)
T PRK03910 272 AVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAPA 321 (331)
T ss_pred HHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChHh
Confidence 999999999999999 699999999999877653 578999998 999843
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=5.5e-45 Score=327.01 Aligned_cols=258 Identities=19% Similarity=0.209 Sum_probs=206.9
Q ss_pred CCCCC---CCchhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHHcCCeEEEEecCCCC--------HH
Q 023227 1 MMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LE 67 (285)
Q Consensus 1 ~~npt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--------~~ 67 (285)
++||+ ||||+|++.+++.+++++|+ .+|+++ |+||||+|+|++|+++|++|+||||+..+ ..
T Consensus 39 ~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~ 113 (337)
T TIGR01274 39 DCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVG 113 (337)
T ss_pred CCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccc
Confidence 36876 77799999999999999998 678876 77999999999999999999999998543 57
Q ss_pred HHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhC-CCeEecCCCCC--CCchHhHHhchHHHHHhhh---CCCCCEE
Q 023227 68 RRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKT-PNAYMLQQFEN--PANPKIHYETTGPELWKGS---GGRIDAL 139 (285)
Q Consensus 68 ~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~~~g~~t~~~EI~~q~---~~~~d~i 139 (285)
|+.+++.+||+|+.++... ...+....+.+.+++. +..|+++.+.+ |.. ..||.++++||++|+ +..||+|
T Consensus 114 ~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~v 192 (337)
T TIGR01274 114 NIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYV 192 (337)
T ss_pred hHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 9999999999999998632 1234555555555554 33466666533 444 678999999999995 3469999
Q ss_pred EEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCccCCCC---CCCccccccCCCC--Cc--cCcccccCCeEEEeCHH
Q 023227 140 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSD 212 (285)
Q Consensus 140 v~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~d~~~~v~d~ 212 (285)
|+|+|+|||++|+++++|...|++|||||+|.+++.+.... ...+.+++++.+. .+ +.+..+++|+.|.|+|+
T Consensus 193 vv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 272 (337)
T TIGR01274 193 VVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNE 272 (337)
T ss_pred EEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCH
Confidence 99999999999999999999999999999999997653211 1123334444332 11 34567788999999999
Q ss_pred HHHHHHHHHHHhcCCeeeh-hHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCCC
Q 023227 213 EAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 265 (285)
Q Consensus 213 e~~~a~~~l~~~~gi~~~p-~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 265 (285)
|++++++.|++++|+++|| |||+++++++++++++. .++++||++| |||...
T Consensus 273 e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h-tGG~~~ 326 (337)
T TIGR01274 273 GTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH-LGGAPA 326 (337)
T ss_pred HHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe-CCChhh
Confidence 9999999999999999999 79999999999998876 5678999888 888743
No 76
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.9e-44 Score=320.10 Aligned_cols=246 Identities=37% Similarity=0.566 Sum_probs=201.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 2 MEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 2 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+|||||||+|++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|++|+|+++++.+++.++.+|++|+.
T Consensus 33 ~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~ 107 (306)
T PF00291_consen 33 LNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVIL 107 (306)
T ss_dssp GSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEE
T ss_pred CCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEE
Confidence 689999999999999999998876 789999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHHHHHHHHHH-------hCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCE--EEEccCCcccHHHH
Q 023227 82 TDPAKGMKGAVQKAEEILA-------KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA--LVSGIGTGGTITGA 152 (285)
Q Consensus 82 ~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~--iv~~vG~Gg~~aGi 152 (285)
++. ++++..+.+.++++ ..++. ++|+ ++.+.+.||.+++.||++|++ .||. ||+|+|+||+++|+
T Consensus 108 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi 181 (306)
T PF00291_consen 108 VPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGI 181 (306)
T ss_dssp ESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHH
T ss_pred ccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHH
Confidence 886 33333333333332 22222 6777 555558999999999999997 6766 99999999999999
Q ss_pred HHHHHh--hCCCcEEEEEecCCCCccC----CCCCC----CccccccCCCC-Ccc----CcccccCCeEEEeCHHHHHHH
Q 023227 153 GKFLKE--KNPNIKLYGIEPTESPVLS----GGKPG----PHKIQGIGAGF-VPG----VLEVNIIDEVVQVSSDEAIET 217 (285)
Q Consensus 153 ~~~~k~--~~~~~~vigv~~~~~~~~~----~~~~~----~~~~~gl~~~~-~~~----~~~~~~~d~~~~v~d~e~~~a 217 (285)
+.+++. . |++|||+|++.+++++. .+... .+.+.+++.+. .+. .+.+++.+.++.|+|+|+.++
T Consensus 182 ~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a 260 (306)
T PF00291_consen 182 AAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEA 260 (306)
T ss_dssp HHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHH
T ss_pred Hhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHH
Confidence 999999 7 89999999999987664 23321 13556777655 222 234666778899999999999
Q ss_pred HHHHHHhcCCeeehhHHHHHHHHHHHHhcCC---CCCCEEEEEec
Q 023227 218 AKLLALKEGLFVGISSGGAAAAAIEIAKRPE---NAGKLIVVIFP 259 (285)
Q Consensus 218 ~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~---~~~~~vv~i~~ 259 (285)
+++|++++|+++||++|+++++++++.++.. .++++||+|+|
T Consensus 261 ~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 261 IRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp HHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred HHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 9999999999999999999999999987764 37899999983
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.7e-42 Score=330.37 Aligned_cols=262 Identities=21% Similarity=0.244 Sum_probs=201.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCC
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGA 77 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~~~~~~~~~Ga 77 (285)
.+|||||||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.+||
T Consensus 294 ~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA 369 (610)
T PRK13803 294 DLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGA 369 (610)
T ss_pred CCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCC
Confidence 4799999999999999999998886 24555689999999999999999999999999864 3568899999999
Q ss_pred EEEEeCCC-CChHHHHHHH-HHHHHhCCCeEecCCCC---C--CCchHhHHhchHHHHHhhhC----CCCCEEEEccCCc
Q 023227 78 ELVLTDPA-KGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIHYETTGPELWKGSG----GRIDALVSGIGTG 146 (285)
Q Consensus 78 ~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~EI~~q~~----~~~d~iv~~vG~G 146 (285)
+|+.++.. ..+.++.+.+ +++..+.++.+|+.++. + |.+...||++++.||.+|+. ..||+||+|+|+|
T Consensus 370 ~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgG 449 (610)
T PRK13803 370 NVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGG 449 (610)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcC
Confidence 99999852 3555664444 44534444566664432 2 33434589999999999984 2599999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCCCC--------ccCCCCCC-------------------C-ccccccCCCCC-ccC
Q 023227 147 GTITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPG-------------------P-HKIQGIGAGFV-PGV 197 (285)
Q Consensus 147 g~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~-------------------~-~~~~gl~~~~~-~~~ 197 (285)
|+++|++.+|++ .|++|||||||.++. ++..+++. . +...|+..+.+ |..
T Consensus 450 g~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~ 528 (610)
T PRK13803 450 SNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMH 528 (610)
T ss_pred HhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHH
Confidence 999999999964 789999999999862 23333221 0 11233332111 211
Q ss_pred --cccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 198 --LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 198 --~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
+.....++++.|+|+|++++++.|++.|||+++++||++++++++++.+. .++++||+++|++|+||+++
T Consensus 529 ~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 529 ANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred HHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHH
Confidence 12333457999999999999999999999999999999999999986543 35789999997889999986
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.2e-43 Score=313.67 Aligned_cols=253 Identities=20% Similarity=0.252 Sum_probs=194.3
Q ss_pred CCCCC--CCchhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHc
Q 023227 1 MMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLI--EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAF 75 (285)
Q Consensus 1 ~~npt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-~~~~~~~~ 75 (285)
++||+ ||||+|++.+++.++.++|. ++|+ ++|+||||+|+|++|+.+|+++++|||...+.. +...++.+
T Consensus 44 ~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~ 118 (329)
T PRK14045 44 DLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIM 118 (329)
T ss_pred cccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHC
Confidence 46886 89999999999999999988 5677 479999999999999999999999999875443 66678999
Q ss_pred CCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEe-cCCCCCCCchHhHHhchHHHHHhhhC---CCCCEEEEccCCccc
Q 023227 76 GAELVLTDPAKG---MKGAVQKAEEILAKTPNAYM-LQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGT 148 (285)
Q Consensus 76 Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~g~~t~~~EI~~q~~---~~~d~iv~~vG~Gg~ 148 (285)
||+++.++...+ .+.+.+.+++++++.+..|+ .+++.||.+ ..||.+...||++|++ .++|+||+|+|||||
T Consensus 119 Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt 197 (329)
T PRK14045 119 GIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGT 197 (329)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHH
Confidence 999998874222 23455666677666544565 466678887 5566555569999996 369999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCCccCCCCC-----CCccccccCCCC-CccCcccccCCeEEEeCHHHHHHHHHHHH
Q 023227 149 ITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP-----GPHKIQGIGAGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLA 222 (285)
Q Consensus 149 ~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~d~~~~v~d~e~~~a~~~l~ 222 (285)
++|+++++|..+|++|||+|+|.+......+.. ....+.+++.+. .+...+. +.|++..++ +|++++++.|+
T Consensus 198 ~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la 275 (329)
T PRK14045 198 LAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVG 275 (329)
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEeccc-ccCCCCCCC-HHHHHHHHHHH
Confidence 999999999999999999999976321110100 011233444332 2223333 347766666 79999999999
Q ss_pred HhcCCeeeh-hHHHHHHHHHHHHhcCCCCCCEEEEEecCCCC
Q 023227 223 LKEGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 263 (285)
Q Consensus 223 ~~~gi~~~p-~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 263 (285)
++|||++|| |||+++++++++++++. .+++||+|| |||.
T Consensus 276 ~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ih-tGG~ 315 (329)
T PRK14045 276 TMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIH-TGGI 315 (329)
T ss_pred HhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEE-CCCc
Confidence 999999999 99999999999998764 367899999 8886
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=300.34 Aligned_cols=258 Identities=23% Similarity=0.267 Sum_probs=219.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE
Q 023227 1 MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAEL 79 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v 79 (285)
|+|||||||||++..++..+.+.|. .+|+++||||+|.|+|+++++.|++|.|++|.+ .+..|+.+|..+|+++
T Consensus 102 ~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~ 176 (411)
T COG0498 102 GHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHV 176 (411)
T ss_pred ccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEE
Confidence 6899999999999999999999984 479999999999999999999999999999998 9999999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHh
Q 023227 80 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKE 158 (285)
Q Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~ 158 (285)
+.+++ +++++.+.+++++++. ++++....-||.. +.|+.|+++||++|++ ..||+|++|+|+||++.|+++++++
T Consensus 177 i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~ 252 (411)
T COG0498 177 IAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKE 252 (411)
T ss_pred EEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHh
Confidence 99997 7899999999999876 5577766678887 8899999999999997 4799999999999999999999999
Q ss_pred hCC------CcEEEEEecCCCCccCCC-CC---C-CccccccCCCCCccCcc------cccCCeEEEeCHHHHHHHHHHH
Q 023227 159 KNP------NIKLYGIEPTESPVLSGG-KP---G-PHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLL 221 (285)
Q Consensus 159 ~~~------~~~vigv~~~~~~~~~~~-~~---~-~~~~~gl~~~~~~~~~~------~~~~d~~~~v~d~e~~~a~~~l 221 (285)
..| .+++.+|++++..++... +. . .+..+.|..+ .|.++. .+..+..+.|+|+|++++++.+
T Consensus 253 ~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l 331 (411)
T COG0498 253 GLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLL 331 (411)
T ss_pred cccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHH
Confidence 876 367889999887665422 11 2 2223344332 233322 2224569999999999999999
Q ss_pred HHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcch
Q 023227 222 ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 268 (285)
Q Consensus 222 ~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 268 (285)
++.+|+++||+||+++++++++.++-..+++++|++.|.+|.|+.++
T Consensus 332 ~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 332 AEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred HHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 99999999999999999999998762256789999999999999887
No 80
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=7.2e-33 Score=254.97 Aligned_cols=253 Identities=17% Similarity=0.125 Sum_probs=196.1
Q ss_pred CCCCCCCchhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCChHHHHH-HHHHHHcCCeEEEEecCC-CCHHHHHHHHHc
Q 023227 1 MMEPCSSVKDRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAF 75 (285)
Q Consensus 1 ~~nptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~-A~~a~~~G~~~~iv~p~~-~~~~~~~~~~~~ 75 (285)
|+|||||||||++.. ++..+++ +. ..+|+++||||+|.|+ |.++.+.|++|+|++|++ ++..++.+|..+
T Consensus 104 fhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~ 178 (462)
T PRK09225 104 FHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTL 178 (462)
T ss_pred ccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhh
Confidence 789999999999988 7888887 42 2689999999999999 788999999999999996 999999999999
Q ss_pred -CCEE--EEeCCCCChHHHHHHHHHHHHh------CCCeEecCCCCCCCchHhHHhchHHHHHhhhCC---CCCEEEEcc
Q 023227 76 -GAEL--VLTDPAKGMKGAVQKAEEILAK------TPNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGI 143 (285)
Q Consensus 76 -Ga~v--~~~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~---~~d~iv~~v 143 (285)
|++| +.+++ +++++...++++.++ . +++..+.. ||.. +.||.+.++|+++|+.+ .||+|++|+
T Consensus 179 ~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPt 253 (462)
T PRK09225 179 QGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPS 253 (462)
T ss_pred cCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEEC
Confidence 9977 55665 788988888876554 3 45555554 6766 78999999999999964 389999999
Q ss_pred CCcccHHHHHHHHHhhCCCcEEEEEecCCCCccC----CCCCC-----CccccccCCCCCccCccc--------------
Q 023227 144 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLEV-------------- 200 (285)
Q Consensus 144 G~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~~-------------- 200 (285)
|+||.+.|.+.+.+.-.|-.|+|+++ ..++++. .|... .+...+|... .|.++.+
T Consensus 254 Gnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~ 331 (462)
T PRK09225 254 GNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVE 331 (462)
T ss_pred CcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHH
Confidence 99999999999955556777999997 4444432 23221 1222333222 1222211
Q ss_pred -------ccCC---------------eEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 023227 201 -------NIID---------------EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIF 258 (285)
Q Consensus 201 -------~~~d---------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~ 258 (285)
+.-. ..+.|+|+|+.++++.+++++|+++||+||++++++.++.+ +++++|++.
T Consensus 332 ~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~ 407 (462)
T PRK09225 332 ELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLS 407 (462)
T ss_pred HHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEe
Confidence 0001 46889999999999999999999999999999999988632 456789999
Q ss_pred cCCCCCCcchh
Q 023227 259 PSFGERYLSSV 269 (285)
Q Consensus 259 ~~gG~~~~~~~ 269 (285)
|.+|.|+.+.+
T Consensus 408 Ta~p~Kf~~~v 418 (462)
T PRK09225 408 TAHPAKFPEVV 418 (462)
T ss_pred cCCccCCHHHH
Confidence 99999987653
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=232.55 Aligned_cols=253 Identities=21% Similarity=0.258 Sum_probs=198.6
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CChHHHHHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCE
Q 023227 5 CSSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAE 78 (285)
Q Consensus 5 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~g~a~A~~a~~~G~~~~iv~p~~~----~~~~~~~~~~~Ga~ 78 (285)
.|.+|.|++++++.+|+++|. +++||+. .+||.+++|++|+++|++|+.++.... -..++...+.+|++
T Consensus 44 ~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~ 118 (323)
T COG2515 44 FGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAE 118 (323)
T ss_pred cCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCce
Confidence 478999999999999999998 8999984 499999999999999999999997754 12367778899999
Q ss_pred EEEeCCCCCh--HHHH-HHHHHHHHhCCCeEecCCCC-CCCchHhHHhchHHHHHhhhC--CCCCEEEEccCCcccHHHH
Q 023227 79 LVLTDPAKGM--KGAV-QKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGA 152 (285)
Q Consensus 79 v~~~~~~~~~--~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~q~~--~~~d~iv~~vG~Gg~~aGi 152 (285)
+..++...++ +... ..++++.++....|.++... ||.. ..||...+.||.+|.. -++|.||+++|||||.||+
T Consensus 119 ~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl 197 (323)
T COG2515 119 VRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGL 197 (323)
T ss_pred EEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHH
Confidence 9999976555 3233 33344444433345555554 5554 6799999999999986 5799999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCccCCCCC---CCccccccCCC-CCccCcccccCCeEEEeCHHHHHHHHHHHHHhcCCe
Q 023227 153 GKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 228 (285)
Q Consensus 153 ~~~~k~~~~~~~vigv~~~~~~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~ 228 (285)
+.++...+|+.+|||+.+..+......+. ....++.++.. ...+..+.++....|.++++|.+++++.+++.|||+
T Consensus 198 ~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGil 277 (323)
T COG2515 198 LVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGIL 277 (323)
T ss_pred HHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999998877753321110 11222333332 223456678888899999999999999999999999
Q ss_pred eeh-hHHHHHHHHHHHHhcCC-CCCCEEEEEecCCCCC
Q 023227 229 VGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGER 264 (285)
Q Consensus 229 ~~p-~~g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~ 264 (285)
+|| |++++++++++++++++ ..+++|++|| +||--
T Consensus 278 lDpVYtgKam~Glid~~~k~~f~~~~~vLfiH-tGG~~ 314 (323)
T COG2515 278 LDPVYTGKAMYGLIDLARKGEFPDGSPVLFIH-TGGAP 314 (323)
T ss_pred cccccchHHHHHHHHHHhcccCCCCCceEEEE-cCCcc
Confidence 999 99999999999999888 4556678888 78763
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=8.7e-32 Score=247.99 Aligned_cols=255 Identities=14% Similarity=0.078 Sum_probs=195.4
Q ss_pred CCCCCCCchhHHHHHH---HHHHHHc--CCCCCCCeEEEeeCCChHHHHH-HHHHHHcCCeEEEEecCC-CCHHHHHHHH
Q 023227 1 MMEPCSSVKDRIGYSM---ISDAEAK--GLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILR 73 (285)
Q Consensus 1 ~~nptGS~K~R~a~~~---~~~a~~~--g~~~~g~~~vv~~ssGN~g~a~-A~~a~~~G~~~~iv~p~~-~~~~~~~~~~ 73 (285)
|+|||||||||++..+ +..++++ +. ..|+++||||+|.|+ +.++.+.|++|+|++|++ +++.++.+|.
T Consensus 103 fhGPT~sFKD~a~~~l~~l~~~~~~~~~~~-----~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~ 177 (460)
T cd01560 103 FHGPTLAFKDMALQFLGRLLEYFLKRRNER-----ITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMT 177 (460)
T ss_pred eeCCCcchHHhHHHHHHHHHHHHHHhcCCC-----eEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHH
Confidence 7899999999999866 6666654 43 689999999999995 888999999999999995 9999999999
Q ss_pred HcCC---EEEEeCCCCChHHHHHHHHHHHHhC-----CCeEecCCCCCCCchHhHHhchHHHHHhhhCC----CCCEEEE
Q 023227 74 AFGA---ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG----RIDALVS 141 (285)
Q Consensus 74 ~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~----~~d~iv~ 141 (285)
.+|+ +++.+++ +++++...++++.++. -+++-.+.. |+.. +.+|.+.++|+++|+.. .||.|++
T Consensus 178 t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vV 253 (460)
T cd01560 178 TLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSV 253 (460)
T ss_pred hhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 9997 7888886 6889988888765441 134444443 6666 78999999999999963 5899999
Q ss_pred ccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCc---cCCCCCC------CccccccCCCCCccCccc---cc-------
Q 023227 142 GIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV---LSGGKPG------PHKIQGIGAGFVPGVLEV---NI------- 202 (285)
Q Consensus 142 ~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~---~~~~~~~------~~~~~gl~~~~~~~~~~~---~~------- 202 (285)
|+|+||.+.|.+.+.+.-.|-.|+|+++.+.... +..|... .+...+|... .|.++.+ ..
T Consensus 254 PtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~ 332 (460)
T cd01560 254 PTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTK 332 (460)
T ss_pred ECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHH
Confidence 9999999999999977666778999976544311 1123321 1122233222 1222210 00
Q ss_pred --------------------------CCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEE
Q 023227 203 --------------------------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 256 (285)
Q Consensus 203 --------------------------~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~ 256 (285)
.-..+.|+|+|+.++++.+++++|+++||.||++++++.++.++ +++.+|+
T Consensus 333 ~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~ 409 (460)
T cd01560 333 VKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVV 409 (460)
T ss_pred HHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEE
Confidence 01468999999999999999999999999999999999887654 3457899
Q ss_pred EecCCCCCCcch
Q 023227 257 IFPSFGERYLSS 268 (285)
Q Consensus 257 i~~~gG~~~~~~ 268 (285)
+.|.+|.|+.+.
T Consensus 410 l~Ta~p~Kf~~~ 421 (460)
T cd01560 410 LSTAHPAKFPEA 421 (460)
T ss_pred EecCCcccCHHH
Confidence 998999998765
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=3.8e-29 Score=212.41 Aligned_cols=262 Identities=24% Similarity=0.317 Sum_probs=196.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCE
Q 023227 2 MEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAE 78 (285)
Q Consensus 2 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---~~~~~~~~~~~~Ga~ 78 (285)
+|.||+||..-+...++-|++.|+ .+.|.+...|.||.|.|.+|+++|++|+|||-.. .+..++.+|+.+||+
T Consensus 80 L~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~ 155 (396)
T COG0133 80 LNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE 155 (396)
T ss_pred hcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCce
Confidence 699999999999999999999999 4667777889999999999999999999999762 345678899999999
Q ss_pred EEEeCC-CCChHHHHHHH-HHHHHhCCCeEec-----CCCCCCCchHhHHhchHHHHHhhh----CCCCCEEEEccCCcc
Q 023227 79 LVLTDP-AKGMKGAVQKA-EEILAKTPNAYML-----QQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGG 147 (285)
Q Consensus 79 v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~-----~~~~~~~~~~~g~~t~~~EI~~q~----~~~~d~iv~~vG~Gg 147 (285)
|+.|.. +....++.+.+ +.+.......+|+ .|.--|......++.+|.|.-+|+ +..||.||.|||+|+
T Consensus 156 V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGS 235 (396)
T COG0133 156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGS 235 (396)
T ss_pred EEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCc
Confidence 999874 44667777666 5565555556663 222224444568999999987775 355999999999999
Q ss_pred cHHHHHHHHHhhCCCcEEEEEecCCCC--------ccCCCCCCC-------------------ccc-cccCC-CCCccCc
Q 023227 148 TITGAGKFLKEKNPNIKLYGIEPTESP--------VLSGGKPGP-------------------HKI-QGIGA-GFVPGVL 198 (285)
Q Consensus 148 ~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~~-------------------~~~-~gl~~-~~~~~~~ 198 (285)
.+.|++..|.. .+++++||||+.+.. ++..|++.. +.+ .||.. +.-|...
T Consensus 236 NAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha 314 (396)
T COG0133 236 NAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHA 314 (396)
T ss_pred chhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHH
Confidence 99999988864 367999999998763 333333310 000 11111 1111111
Q ss_pred cccc--CCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchh
Q 023227 199 EVNI--IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 269 (285)
Q Consensus 199 ~~~~--~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 269 (285)
...- --+.+.|+|+|++++.+.|.+.|||+.-..|+.|+|.+++++++.. +++.+|+-++..|+||+.++
T Consensus 315 ~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 315 YLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred HHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHH
Confidence 1111 1258999999999999999999999999999999999999987653 55566676767799998874
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=191.46 Aligned_cols=268 Identities=22% Similarity=0.269 Sum_probs=194.8
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCE
Q 023227 3 EPCSSVKDRIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAE 78 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~---~~~~~~~~~~~~Ga~ 78 (285)
-||||||...|...+-.++..|. +.|+|= ..|.+|.|++.+|+.+|++|+|||-.. ..+-+.-.|+.+||+
T Consensus 105 tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~ 179 (432)
T COG1350 105 TPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAE 179 (432)
T ss_pred CCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCe
Confidence 59999999999999999999888 556654 559999999999999999999999763 345678889999999
Q ss_pred EEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhh---CCCCCEE
Q 023227 79 LVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS---GGRIDAL 139 (285)
Q Consensus 79 v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~---~~~~d~i 139 (285)
|+..+.+.. .-=+...|.+.+-+.++..|....--.. ...|+..+|+|.-+|+ +..||.+
T Consensus 180 V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnh-vllhQTViGlEakkQle~~~e~PDv~ 258 (432)
T COG1350 180 VVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVI 258 (432)
T ss_pred ecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEE
Confidence 998764211 1113444555555554444432211111 2569999999995554 5679999
Q ss_pred EEccCCcccHHHHHHHHHhh---C-CCcEEEEEecCCCCccCCCCCCCc-----------cccccCCCCCccCcc---cc
Q 023227 140 VSGIGTGGTITGAGKFLKEK---N-PNIKLYGIEPTESPVLSGGKPGPH-----------KIQGIGAGFVPGVLE---VN 201 (285)
Q Consensus 140 v~~vG~Gg~~aGi~~~~k~~---~-~~~~vigv~~~~~~~~~~~~~~~~-----------~~~gl~~~~~~~~~~---~~ 201 (285)
+.|||+|++++|+..-|-.. + ...++|+|+|..++.+..|...-+ .+-.||.+.+|+.+. .+
T Consensus 259 igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLR 338 (432)
T COG1350 259 IGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLR 338 (432)
T ss_pred EEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCccccccc
Confidence 99999999999997766332 2 238999999999999987654211 122456666555432 22
Q ss_pred c--------------CCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCC--CEEEEEecCCCCCC
Q 023227 202 I--------------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG--KLIVVIFPSFGERY 265 (285)
Q Consensus 202 ~--------------~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~--~~vv~i~~~gG~~~ 265 (285)
| +-+....+.+|++++.+.|++.|||+.-|.|+.|+.++++.+.+.+..+ +.|++-++++|.
T Consensus 339 YHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGl-- 416 (432)
T COG1350 339 YHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGL-- 416 (432)
T ss_pred ccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccc--
Confidence 2 2357788999999999999999999999999999999999887665344 344454545566
Q ss_pred cchhhcHHHHHhh
Q 023227 266 LSSVLFESVRKEA 278 (285)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (285)
+|-.-|++++...
T Consensus 417 lDL~~Y~~yl~g~ 429 (432)
T COG1350 417 LDLSAYDKYLEGE 429 (432)
T ss_pred cchhhHHHHhhhh
Confidence 5555688876643
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.94 E-value=3.4e-25 Score=190.38 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=186.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC---CCCHHHHHHHHHcCCE
Q 023227 2 MEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAE 78 (285)
Q Consensus 2 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~---~~~~~~~~~~~~~Ga~ 78 (285)
+|||||||...+...+..+++.|+ ++.|.+...|.||.|+|.+|+++|++|+|+|-. .....++.+||.+||+
T Consensus 148 lnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAk 223 (477)
T KOG1395|consen 148 LNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAK 223 (477)
T ss_pred CCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCce
Confidence 699999999999999999999998 345666677999999999999999999999975 3456789999999999
Q ss_pred EEEeCCC-CChHHHHHHHHHH-HHhCCCeEec-----CCCCCCCchHhHHhchHHHHHhhh----CCCCCEEEEccCCcc
Q 023227 79 LVLTDPA-KGMKGAVQKAEEI-LAKTPNAYML-----QQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGG 147 (285)
Q Consensus 79 v~~~~~~-~~~~~~~~~a~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~t~~~EI~~q~----~~~~d~iv~~vG~Gg 147 (285)
|+.+... ...+++...+-++ .....-.+|+ .++--|.....-+.+++.|-..|. +..||.||.|+|+|+
T Consensus 224 V~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGS 303 (477)
T KOG1395|consen 224 VHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGS 303 (477)
T ss_pred EeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCC
Confidence 9998742 2333433333322 2222122332 222122222346788888876554 356999999999999
Q ss_pred cHHHHHHHHHhhCCCcEEEEEecCCCCc--------cCCCCCCC-----c--cccccCCCCC--------------ccCc
Q 023227 148 TITGAGKFLKEKNPNIKLYGIEPTESPV--------LSGGKPGP-----H--KIQGIGAGFV--------------PGVL 198 (285)
Q Consensus 148 ~~aGi~~~~k~~~~~~~vigv~~~~~~~--------~~~~~~~~-----~--~~~gl~~~~~--------------~~~~ 198 (285)
..+|+..-|+.-. .+++|+|+..+... +..++... + ..+..|.... |..-
T Consensus 304 N~~Glf~pF~~dk-~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels 382 (477)
T KOG1395|consen 304 NSAGLFSPFIRDK-SVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELS 382 (477)
T ss_pred ccccccchhhccc-hhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHH
Confidence 9999998887533 46888988766532 22222210 0 0011111111 1111
Q ss_pred c--cccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCcchhhcHHH
Q 023227 199 E--VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 274 (285)
Q Consensus 199 ~--~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 274 (285)
. ..-.-+++.|+|.|++++.+.|++.|||+.-|.+..|+++..++.+.. .+++.||+-++..|+||+.. ++++
T Consensus 383 ~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvqS--~~ky 457 (477)
T KOG1395|consen 383 HLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQS--VAKY 457 (477)
T ss_pred HHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHHH--HHHh
Confidence 1 122347999999999999999999999999999999999988877665 57888999888899988864 4444
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.5e-24 Score=181.98 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=201.3
Q ss_pred CCCCchhHHHHHHHHH-----HHHcCCCCCCCe----------------EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 4 PCSSVKDRIGYSMISD-----AEAKGLITPGES----------------VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~-----a~~~g~~~~g~~----------------~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
-+||.|.|+..|-+.. |++.|.++...+ .|...|+||.|.++-..++.+|++++|.|+.
T Consensus 113 IsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSA 192 (443)
T COG3048 113 ISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSA 192 (443)
T ss_pred cccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecc
Confidence 4799999998877753 667787655433 6788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhC--------C
Q 023227 63 SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG--------G 134 (285)
Q Consensus 63 ~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~--------~ 134 (285)
++...|.+++|..|.+|+.... +|..+.+.-++.+++.|..||++..++-.. ..||...+..+-.|++ .
T Consensus 193 DAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~e 269 (443)
T COG3048 193 DARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAE 269 (443)
T ss_pred hHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCC
Confidence 9999999999999999999985 788899999999999999999988776665 7899999999988874 2
Q ss_pred CCCEEEEccCCcccHHHHHHHHHhhC-CCcEEEEEecCCCCccCCC---------------CCCCccccccCCCCCccC-
Q 023227 135 RIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIEPTESPVLSGG---------------KPGPHKIQGIGAGFVPGV- 197 (285)
Q Consensus 135 ~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~~---------------~~~~~~~~gl~~~~~~~~- 197 (285)
.|-.|.+|||.||.-.|++.++|... .+++++-+||.++||+.-| ..+.+.++|++++..+..
T Consensus 270 hPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfV 349 (443)
T COG3048 270 HPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFV 349 (443)
T ss_pred CceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchH
Confidence 36689999999999999999999985 5699999999999987521 123445678877653322
Q ss_pred --cccccCCeEEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHH
Q 023227 198 --LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 244 (285)
Q Consensus 198 --~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~ 244 (285)
...+++|+.|+|+|+..++...+|++.||+.+|||+-+++++-.++.
T Consensus 350 gr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 350 GRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred HHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 23678999999999999999999999999999999888888776654
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=92.81 E-value=0.9 Score=36.73 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCeEE-EEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhH
Q 023227 42 GIGLAFMAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 120 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~-iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 120 (285)
|..+.++++.+|.++. -+.+.+.-..-+..+...+.+|.++++. .....+.++.+.+++|+.-.+..++.+.+ ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 5678999999998883 3333333345566777888999999974 34455666778888877554433222222 112
Q ss_pred HhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 121 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 121 ~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
.. +|.+++. ..||.|++..|+---=- .....+...+..-+++|
T Consensus 90 ~~----~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 EE----AIINRINASGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGV 133 (172)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEE
Confidence 22 3444432 35999999999865322 23334444444444554
No 88
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=92.29 E-value=0.29 Score=40.72 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=45.7
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeeehhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 023227 206 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 264 (285)
Q Consensus 206 ~~~v~d~e~~~a~~~l~~~~gi~~~p~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 264 (285)
...|+++|..+++...++..+.++||.+|.++-...+.+.+.. +.-.++++.+.+..|
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aK 205 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAK 205 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhh
Confidence 4568999999999999999999999999999999888877654 333455555444443
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=89.87 E-value=3.5 Score=33.28 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhH
Q 023227 42 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 120 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 120 (285)
|..+.++++.+|.+..--++. +.-..-++.+...+.+|.+++.. .....+.++.+.+++|+...+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 567899999999983222222 11233455566778999999863 23445555677788877554432222222 111
Q ss_pred HhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 121 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 121 ~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
. .+|.+++. ..||.|+++.|+---=- .....+...+..-+++|
T Consensus 88 ~----~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 E----EEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 1 12444442 35999999999865322 33344444455556665
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.06 E-value=8.1 Score=32.37 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=42.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+|++.+|+.|..++.+....+.+++++++.. +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 6788999999999999999999999998876 44567778899999986653
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.89 E-value=6.5 Score=35.29 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~ 82 (285)
+..+..++++...+|... |..|.+++..|+..|.++++ +. .++.+++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~-~~--~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVA-ID--IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEE-Ec--CCHHHHHHHHHhCCceEec
Confidence 344455677755555554 99999999999999997433 32 2457788889999965443
No 92
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.66 E-value=3.8 Score=36.90 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 26 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.++.+.+|. ..|..|...+..++..|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3455455555 56999999999999999986666555556788889999999853
No 93
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.45 E-value=5.1 Score=35.96 Aligned_cols=57 Identities=25% Similarity=0.445 Sum_probs=43.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~ 82 (285)
...+++|...||.+.+|.-|..+-..|+.+|...++.+.. +.|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s---~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS---SEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC---HHHHHHHHhcCCCEEEc
Confidence 4667888788888889999999999999999944444333 36666899999976654
No 94
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.39 E-value=7 Score=34.41 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=42.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...+++|...+|.+.+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4456777766667777899999999999999998555432 35678888889985444
No 95
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.35 E-value=5 Score=34.82 Aligned_cols=58 Identities=28% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.++....++...+| ...|..|..++..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRRVLV-VGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 333333446644444 4568899999999999999755555 335678888888998543
No 96
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=86.11 E-value=12 Score=34.31 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=41.6
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.++..+.++...+| ..+|-.|..++..|+.+|.+.+++... ++.+++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeE
Confidence 344455677755444 667889999999999999987664433 467888889999974
No 97
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.31 E-value=14 Score=35.65 Aligned_cols=96 Identities=22% Similarity=0.146 Sum_probs=64.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++++.+..|+.|+.+|..-+..|.+++++= . ++++.+.++.+|.+++.-+..+ .
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId-~--d~~~~~~~~~~g~~~i~GD~~~--~--------------------- 471 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIE-T--SRTRVDELRERGIRAVLGNAAN--E--------------------- 471 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEE-C--CHHHHHHHHHCCCeEEEcCCCC--H---------------------
Confidence 578889999999999999988999886663 2 3456777777777666655421 1
Q ss_pred CCCCCchHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 111 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
|++++.+ .+.|.++++++.-..-.-+....++.+|+.++++-
T Consensus 472 ----------------~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 472 ----------------EIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred ----------------HHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2222221 24677777777655444455666777888888775
No 98
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.88 E-value=26 Score=33.55 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=40.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+.-..|.-|.+.+..|+.+|..++++ +..+.+++..+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 57888999999999999999999853333 346788999999999976554
No 99
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=84.72 E-value=6.7 Score=34.81 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=44.7
Q ss_pred HcCCCCCCCeEEEeeCC---ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 023227 22 AKGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ss---GN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
..|.++ | .+|+.... +|.++++..+++++|++++++.|+.. ++..++.++..|+++..++
T Consensus 144 ~~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 346543 2 34444444 69999999999999999999999864 5555667777899887766
No 100
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.22 E-value=11 Score=30.72 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhH
Q 023227 42 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 120 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 120 (285)
|..+.++++.+|.+..--++. +.-..-+......|..|.+++.. -....+.++.+.+++|+.-.+.. +.+..+.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH--
Confidence 366889999999764322221 11123344556788899999863 33455667778888876543321 1122111
Q ss_pred HhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 121 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 121 ~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
--.+|.+++. ..||.++++.|+=-==- ...-.+...+..-++||
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~PkQE~-~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCPKQEI-WMRNHRHLKPDAVMIGV 132 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCcHhHH-HHHHhHHhCCCcEEEEe
Confidence 1123555543 35999999998743211 11223333444555665
No 101
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=83.97 E-value=8.1 Score=34.01 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 023227 12 IGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP 84 (285)
Q Consensus 12 ~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+-|+.+-.+ +.+| +.|+-- +.+--|+++--.|+.+|++.+-+++....- +-.+.++.+||+-++.+.
T Consensus 147 TAyrmL~dfv~---L~~G-D~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 147 TAYRMLKDFVQ---LNKG-DSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHHh---cCCC-CeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 45666776665 3445 455543 335567788888999999999998876544 446678999999988874
No 102
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.72 E-value=13 Score=33.12 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=41.9
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.+...+.++...+|...+|..|.+++..|+.+|.+++++.+. . +...++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3455667777677777777999999999999999996555432 2 6667788888643
No 103
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.56 E-value=9 Score=34.21 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=46.1
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
++.| +.||+..-|+.-+| .|.-.-.+|+..|++++++-.. +..|.+.++.+||+..+...
T Consensus 175 k~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3444 46886666666667 8888888899999999999433 45778899999999987764
No 104
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.34 E-value=8 Score=34.17 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.+.+++|...+|.+.+|--|.+++..|+..|.+++++.+ +..+.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4566777766667776788999999999999998655543 35678888899986544
No 105
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.31 E-value=17 Score=30.13 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 023227 10 DRIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 59 (285)
Q Consensus 10 ~R~a~~~~~~a~~~--g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv 59 (285)
-||..+.+..+.+. +..+...++++.-..||.|..+|......|.+++++
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 47788888777665 233333356777788999999999999999987743
No 106
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.18 E-value=17 Score=35.71 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=40.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
++++.+..|..|+.+|..-+..|++++++ . .++.+++.++..|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI-D--~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL-D--HDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE-E--CCHHHHHHHHhcCCeEEEEeC
Confidence 57899999999999999999999998777 2 245677777888877766654
No 107
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.12 E-value=9.1 Score=34.08 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 80 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~-~Ga~v~ 80 (285)
+.+.+++|...+|.+.+|.-|.++...|+.+|.++++..+ +..+.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 3456778877777777799999999999999998555433 3567777877 898543
No 108
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=82.95 E-value=16 Score=33.65 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=70.2
Q ss_pred EEeeCCC-hHHHHHHHHHHHcCCeEEEEecC-CCC----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 023227 33 LIEPTSG-NTGIGLAFMAAAKQYRLIITMPA-SMS----LERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTPNA 105 (285)
Q Consensus 33 vv~~ssG-N~g~a~A~~a~~~G~~~~iv~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 105 (285)
|+.+|+| .+...+.|...+.+.+++.|.-. .-+ ..-.++...+|| +++.++....|. .+.+...-+. +.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HH
Confidence 4556777 56777778887778999977632 222 233456788999 999998532221 1122222122 23
Q ss_pred EecCCCCC---CCchHhHHhchHHHHHhhhCCCCCEEEE-ccCCcccHHHHHHHHHhhCCCcEEEE
Q 023227 106 YMLQQFEN---PANPKIHYETTGPELWKGSGGRIDALVS-GIGTGGTITGAGKFLKEKNPNIKLYG 167 (285)
Q Consensus 106 ~~~~~~~~---~~~~~~g~~t~~~EI~~q~~~~~d~iv~-~vG~Gg~~aGi~~~~k~~~~~~~vig 167 (285)
.|-+.|-. ...|. ......|++++.+ .++|.- +.|.|--..=.=.+++.+.|+.+|++
T Consensus 77 ~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPL--IAKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCCCHHHH--HHHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCccccccchHHH--HHHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 44333311 12222 2334557777763 678877 56888888888888999999998875
No 109
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.95 E-value=19 Score=35.33 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=67.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
.+++.+..|..|+.+|..-...|++++++ .. ++.+++.++.+|..++.-+..+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI-D~--d~~~v~~~~~~g~~v~~GDat~------------------------ 453 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL-ER--DISAVNLMRKYGYKVYYGDATQ------------------------ 453 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE-EC--CHHHHHHHHhCCCeEEEeeCCC------------------------
Confidence 57888999999999999988999988766 22 3566777777777665555321
Q ss_pred CCCCCchHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEe
Q 023227 111 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 169 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~ 169 (285)
.|++++.+ .+.|.++++.+.=-...-+....|+.+|+.+|++-.
T Consensus 454 ---------------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 454 ---------------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred ---------------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 02333322 346778888777555556677788888988888753
No 110
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=81.86 E-value=10 Score=34.23 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
++++..++||.. |....-|-.|.....+|+.+|.+++.+-. ++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEcC
Confidence 455566788855 55555555888888888889988877743 46888889999998877763
No 111
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.29 E-value=17 Score=32.53 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.++....++...+|. .+|..|.++...++.+|.+.++++.. ++.+++.++.+|++.++
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLV 219 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3333334466555555 56889999999999999965555443 35788888999997544
No 112
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.28 E-value=9.7 Score=33.95 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.++..+++|...+|.. .|..|.+++..|+..|.+++++.+ ++.|++.++.+|++.+
T Consensus 157 ~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 157 ALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASA 213 (329)
T ss_pred HHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCcee
Confidence 34445677776555555 577899989999999987444322 3567888999999654
No 113
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.08 E-value=25 Score=31.32 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=39.2
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
.+...++++...+|.+ +|..|.+++..|+.+|.+.++++.. ++.+.+.++.+|++.++
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~~--~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSEP--SEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3445567775555654 6889999999999999854444432 45667777778885443
No 114
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=80.95 E-value=4.1 Score=36.98 Aligned_cols=55 Identities=22% Similarity=0.142 Sum_probs=43.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 85 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 85 (285)
+.++..++|..+.-+|+.+..++=.-.|++|.-+.......+...|+++++++-+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 5788899999999999888333333788999988899999999999999999853
No 115
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=80.92 E-value=18 Score=30.67 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=45.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..|||..+|.-|.++|......|.+++++-...........++..|.++..+..+ .+.++..+...+..++.
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 6789999999999999999999998776644321122334455667776544321 23334444455554443
No 116
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=80.73 E-value=37 Score=32.24 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCeE--
Q 023227 44 GLAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPNAY-- 106 (285)
Q Consensus 44 a~A~~a~~~G~~~~iv~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~-- 106 (285)
-+..+|+..|+++.+.. |..+....+......|++.+....+. .| .++.+...+.+++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34667899999988865 34445567777788899998886432 22 244444444433221111
Q ss_pred ---ecCCCC-CC--CchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023227 107 ---MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 173 (285)
Q Consensus 107 ---~~~~~~-~~--~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 173 (285)
|-.+.. .. ..........+.++.+.+ ..+.||+..-||.++--++++ .|.++|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCCHH
Confidence 111100 00 011223344455666666 378999999999987766654 68899999976443
No 117
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.34 E-value=26 Score=31.08 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=38.7
Q ss_pred cCCCCCC--CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEEe
Q 023227 23 KGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 82 (285)
Q Consensus 23 ~g~~~~g--~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~~~~~~~~-~Ga~v~~~ 82 (285)
.+.++++ ...+|.+.+|-.|.++...|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 4445554 4566666778899999999999998 5555433 3466676665 89865443
No 118
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=80.16 E-value=30 Score=30.87 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=41.6
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.+...+.++...+| ...|..|.++...|+.+|...++.+.. ++.+...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 34566777755444 667899999999999999887666554 3567777888888544
No 119
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.97 E-value=24 Score=31.75 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~-~~Ga~v~~ 81 (285)
+.+.+++|...+|.+.+|--|.++...|+.+|.+++++.+ ++.|.+.++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEE
Confidence 3456777766667777799999999999999998544422 456777776 78986544
No 120
>PRK06348 aspartate aminotransferase; Provisional
Probab=79.66 E-value=41 Score=30.59 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=33.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+..+++.++..++..+-. +-.-.|+++.-.-..-...++..|++++.++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 457777888888776666542 2223455555444455667788999998876
No 121
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.59 E-value=24 Score=31.67 Aligned_cols=57 Identities=25% Similarity=0.227 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.+.+++++..+|. .+|-.|.+++..|+..|.+.++.+.. ++.+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 44566777666665 46889999999999999875555433 45678888889985433
No 122
>PRK12743 oxidoreductase; Provisional
Probab=79.54 E-value=24 Score=29.84 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=47.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..+|+.++|.-|.++|......|.+++++...+.+. .....++..|.++..+..+ .+.++..+...++.++.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 578889999999999999999999887775543222 2245566778777665432 23334444455555543
No 123
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.53 E-value=28 Score=28.00 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=70.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++|..-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . +.+ ++.++- +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~-------ell~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLD-------ELLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHH-------HHHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehh-------hhcchh-hhhhhhh
Confidence 5777789999999999999999999988877653332 234444422 1 222 223333 4443322
Q ss_pred CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH--HHHHHHHhhCCCcEEEEEec
Q 023227 111 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEP 170 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a--Gi~~~~k~~~~~~~vigv~~ 170 (285)
-.++.+ ..-+..|.+++++ ++.+++-++-|+.+- .+..++++ ..+.-.+.++
T Consensus 100 plt~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred cccccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 223322 3456778889984 789999999999864 45555554 3344455543
No 124
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.31 E-value=42 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=28.5
Q ss_pred hHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhC----CCcEEEEEe
Q 023227 124 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 169 (285)
Q Consensus 124 ~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~----~~~~vigv~ 169 (285)
...+++++- .++|.||+. +...+.|+.+++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 344455443 458888864 5666778999998876 256777764
No 125
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=78.70 E-value=12 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEEecCC--CCH--HHH----HHHHHcCCEEEEeC
Q 023227 38 SGNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 83 (285)
Q Consensus 38 sGN~g~a~A~~a~~~G~~~~iv~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 83 (285)
-+|.+++++..++++|+.++++.|+. .+. ..+ +..+..|.++..++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999997 455 233 34456699998885
No 126
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.55 E-value=5.1 Score=31.66 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=33.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 77 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga 77 (285)
|....+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 5667899999999999999999999997764 55555555443
No 127
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=78.38 E-value=25 Score=30.72 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+...+.++...+|...+|..|.+++..|+.+|.+.+++.... .+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCC
Confidence 3445567776666666778899999999999999876664432 445555566764
No 128
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.95 E-value=35 Score=28.81 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=45.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..||++.+|.-|.++|......|.+++++ .........+.++.++.++..+..+ .+.++..+..++..++
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999987765 3333344456666677776655432 2333344444444444
No 129
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=77.94 E-value=9.3 Score=28.57 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHH
Q 023227 42 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHY 121 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 121 (285)
|..+...|+.+|.+++++.+ ++.|++.++.+|++.++.....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~---------------------------------- 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD---------------------------------- 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS----------------------------------
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc----------------------------------
Confidence 55666667777744444432 35667777777765554443211
Q ss_pred hchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 122 ETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 122 ~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
...+|.+-.+ ..+|.+|-++|++.++.- +++...+.-+++-+
T Consensus 46 --~~~~i~~~~~~~~~d~vid~~g~~~~~~~---~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 46 --FVEQIRELTGGRGVDVVIDCVGSGDTLQE---AIKLLRPGGRIVVV 88 (130)
T ss_dssp --HHHHHHHHTTTSSEEEEEESSSSHHHHHH---HHHHEEEEEEEEEE
T ss_pred --cccccccccccccceEEEEecCcHHHHHH---HHHHhccCCEEEEE
Confidence 1222333232 248889999887765554 34444454455555
No 130
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.85 E-value=29 Score=31.39 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+...++++...+|. .+|-.|..++..|+..|.+.++++.. ++.|++.++.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAVDL--NEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHcCCceE
Confidence 44556777655565 46889999999999999854444432 4577888888998543
No 131
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.79 E-value=27 Score=29.54 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=46.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..|||..++--|+++|......|.+++++-... .+.....++..|.++..+..+ .+.++..+..++..++.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999999988764432 233345566778777654321 23344444445544443
No 132
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=77.61 E-value=29 Score=27.42 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHH
Q 023227 4 PCSSVKDRIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILR 73 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~---------~~~~~~~~~~~ 73 (285)
|.--+-++.+...+.+|.+.|. +.+|.+ |+|.+++-++-+... .+++++|.-. ..+++-.+.++
T Consensus 7 pG~eNT~~tle~a~erA~elgi-----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI-----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc-----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHH
Confidence 5556778888888999998876 455555 668877766655432 3888887632 34567788899
Q ss_pred HcCCEEEEeC
Q 023227 74 AFGAELVLTD 83 (285)
Q Consensus 74 ~~Ga~v~~~~ 83 (285)
..|++|..-.
T Consensus 81 erGa~v~~~s 90 (186)
T COG1751 81 ERGAKVLTQS 90 (186)
T ss_pred HcCceeeeeh
Confidence 9999987655
No 133
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.50 E-value=29 Score=29.39 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=45.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|.-|.++|..-...|.+++++..........+.+...+.++..+..+ .+.++..+...+..+..
T Consensus 17 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 17 VAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6889999999999999998899999888766521122233445567666544332 23334444455554444
No 134
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.50 E-value=55 Score=29.56 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=42.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~-~Ga~v~~~~~ 84 (285)
+++....|.-|...+..++.+|...+|+++. ++.|++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~--~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR--SPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHhCCCeEeecCc
Confidence 7888999999999999999999999999844 5788888877 6777666553
No 135
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=77.21 E-value=21 Score=31.64 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEe
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLT 82 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~-~Ga~v~~~ 82 (285)
++-|..++|...+|++.+|-.|.-+--.|+..|.+++-+... ++|.+.++. +|-+..+-
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~id 202 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGID 202 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceeee
Confidence 345777778777888899999999999999999999988665 588888887 77766543
No 136
>PRK05993 short chain dehydrogenase; Provisional
Probab=77.20 E-value=43 Score=28.78 Aligned_cols=51 Identities=27% Similarity=0.191 Sum_probs=39.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
..||++.+|.-|.++|......|.+++++.+. ..++..++..+.+++.++-
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 57889999999999999988899987776543 3455566666777776664
No 137
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=77.03 E-value=30 Score=30.61 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=36.2
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 25 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 25 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.+.++...+|.. +|..|.+++..|+.+|.+++++.+ +..++..++.+|++-
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 456665555555 899999999999999998554433 345677778888743
No 138
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=76.58 E-value=18 Score=32.03 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=40.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHH----HHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII----LRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~----~~~~Ga~v~~~~~ 84 (285)
+.+.+.-+.|-+.++-.+|+++|+++++..|+... +.-+.. .+..|+.+.++..
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 44555566899999999999999999999999543 232332 2445889988873
No 139
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.53 E-value=28 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 19 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 19 ~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+|-+++.+++| ..++....|--|...-..|+.+|.+=++++.- .+.+++..+.+||+++.-..
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHHhCCeEEeecc
Confidence 56677788888 46788899999999999999999988888654 56788888999998876553
No 140
>PRK14030 glutamate dehydrogenase; Provisional
Probab=75.98 E-value=21 Score=33.49 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 9 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 9 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
--||..+.+..+.+.....+...+|+....||-|..+|.....+|.+++.+-.
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34778888877665443355457889999999999999999999999988644
No 141
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=75.91 E-value=64 Score=29.83 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCCCC-CeEEEeeCCChHHHH--HHHHHHHcCCeEEEEe
Q 023227 13 GYSMISDAEAKGLITPG-ESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 60 (285)
Q Consensus 13 a~~~~~~a~~~g~~~~g-~~~vv~~ssGN~g~a--~A~~a~~~G~~~~iv~ 60 (285)
....+...+.+|.+..| ...||++.++..|.| +|.+. ..|.+++++.
T Consensus 24 v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 24 VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 44556667777776443 467777777777777 56666 7888877765
No 142
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=75.62 E-value=40 Score=29.48 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.+.++...+|...+|..|.+++..|+..|.+.+++.+ ++.+...++.+|++.++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 56677767777777899999999999999998765433 34666667778885443
No 143
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=74.82 E-value=24 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...++++...+|. .+|.-|.+++..|+.+|.+-++.+.. ++.+++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~~--~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAIDI--NPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCCeEE
Confidence 44566777665565 56889999999999999844444332 45678888889985433
No 144
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.78 E-value=25 Score=31.15 Aligned_cols=59 Identities=27% Similarity=0.379 Sum_probs=39.9
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.++..+.+|...+|. .+|-.|.+++..|+..|.+-++++.. ++.+++.++.+|++.++
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~~--~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVDP--SPERLELAKALGADFVI 213 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3444456677666665 46889999999999999983333332 35677778888885443
No 145
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=74.35 E-value=24 Score=31.41 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.+...++++...+|. .+|..|.++...|+..|.+.++.+.. ++.+++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceE
Confidence 344556677555555 57889999999999999986555533 4567777788888543
No 146
>PRK08589 short chain dehydrogenase; Validated
Probab=74.26 E-value=31 Score=29.62 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=44.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|--|+++|..-...|.+++++-...........++..+.++..+..+ .+.++..+...+..++.
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 6788888888999999998889998887755421122344556667666544321 22333344445554443
No 147
>PRK07550 hypothetical protein; Provisional
Probab=74.22 E-value=69 Score=29.08 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=35.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++..+..++..+- ++-.-.|+++.-........++..|++++.++.
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 91 EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 35776777778776665553 333445677664444455667899999999875
No 148
>PRK08226 short chain dehydrogenase; Provisional
Probab=73.97 E-value=34 Score=28.96 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=42.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..||+..+|.-|.++|......|.+++++-+..........++..|.++..+..+ .+.++..+...+..++
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999766644321122233444456666544322 2233333344444443
No 149
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.92 E-value=51 Score=29.14 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
...+.++...+| ..+|..|.++...|+..|++.++.+... +.+...++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 445566655555 5579999999999999999866555543 4567777888884
No 150
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=73.76 E-value=45 Score=27.88 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=44.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..||+..+|.-|.++|......|.+++++-+.. .......++.++.++..+..+ .+.++..+..++..++
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 678888889999999999999999877765432 233345566677766555432 2333333344444443
No 151
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=73.73 E-value=72 Score=29.09 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=42.5
Q ss_pred CCCCchhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHH-c-CCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL--ITPGESVLIEPTSGNTGIGLAFMAAA-K-QYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~g~a~A~~a~~-~-G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.|.-+.|.+....... ..|. +++. +.|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 45666666553322211 2242 3332 257777777777766655432 1 112334445433344455678899999
Q ss_pred EEeCC
Q 023227 80 VLTDP 84 (285)
Q Consensus 80 ~~~~~ 84 (285)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 98864
No 152
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.48 E-value=49 Score=29.26 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=52.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEE-ecCCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIIT-MPASMSLERRIILRAFG-AELVLTDPAKGMKGAVQKAEEILAKTP 103 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv-~p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 103 (285)
+..++|++++-.|+++|.--++.|.+.++. +......+..+.++..| +.-..|+- ++.++..+.+++..++.+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence 367889888889999999999999855443 23344567777888777 33344554 356778888888888873
No 153
>PRK06182 short chain dehydrogenase; Validated
Probab=73.47 E-value=55 Score=27.90 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 101 (285)
..+|++++|--|.++|......|.+++++... ..+++.+...+.+++.++-. +.++..+..++..++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 67889988999999999998999988776543 34455555567777776643 333333444444444
No 154
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.24 E-value=45 Score=29.49 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=37.2
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 25 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 25 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.++++...+|...++..|.+++..|+.+|++++++.+. +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 46666666667777789999999999999976555333 35566667777643
No 155
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.89 E-value=36 Score=29.91 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=50.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCC-E-EEEeCCC-CChHHHHHHHHHHHHhCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGA-E-LVLTDPA-KGMKGAVQKAEEILAKTP 103 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~-~~~~~~Ga-~-v~~~~~~-~~~~~~~~~a~~~~~~~~ 103 (285)
..|||+.|+--|.++|+.-.+.|.+.++++.......++ +.++..++ + ++...-+ .+.+++.+......++++
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 678888666699999999999999999999887666776 77777766 3 4443321 234455555555545553
No 156
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.88 E-value=27 Score=30.61 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=39.0
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.+.+.+.++...+|. .+|-.|.+++..|+.+|.+.+++ .. ++.+.+.++.+|++.
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~-~~--~~~~~~~~~~~g~~~ 202 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV-GR--HSEKLALARRLGVET 202 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE-cC--CHHHHHHHHHcCCcE
Confidence 355667777666666 46889999999999999994443 22 356777777788764
No 157
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.79 E-value=27 Score=23.77 Aligned_cols=49 Identities=20% Similarity=0.088 Sum_probs=37.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----H----HHHHHHHHcCCEEEE
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L----ERRIILRAFGAELVL 81 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-----~----~~~~~~~~~Ga~v~~ 81 (285)
++.-.+|..|.-+|.+.+.+|.+++++.+.+.. + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 566789999999999999999999999876432 1 124566777777765
No 158
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.76 E-value=26 Score=31.30 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=45.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|--|.++|......|.+++++.+.... ......++..|.++..+..+ .+.++..+.+.+..++.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 67888888999999999999999987776543211 12344566778887665432 23333334444444443
No 159
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.69 E-value=18 Score=33.71 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+..-+| ++|+....|.-|+.+|..++.+|.+++++ . .++.+....+.+|+++.
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~-d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT-E--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-E--CChhhHHHHHhcCCEEc
Confidence 433455 67888999999999999999999975553 2 24567778888998654
No 160
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.62 E-value=29 Score=28.41 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=39.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
+.|--.|||-+|.++|-.+...|..++++.....-+. -.+.+++.+.. .++..+.+.+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 4444469999999999999999999999987642111 24667777773 455566666555544
No 161
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=72.56 E-value=30 Score=31.69 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=41.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~ 82 (285)
..+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|++.++-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456665666777779999999999999999875543 2456777888899876543
No 162
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.54 E-value=38 Score=26.26 Aligned_cols=54 Identities=30% Similarity=0.281 Sum_probs=38.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL----ERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~----~~~~~~~~~Ga~v~~~~~ 84 (285)
..||++.++.-|+++|..-...|-..++++..+.+. ..+..++..|.++..+.-
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 458888999999999999888887777776665212 234455777887777653
No 163
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.29 E-value=50 Score=27.43 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=25.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..+|++++|.-|.++|......|.+++++-+
T Consensus 8 ~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 8 TILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 6789999999999999998888988666543
No 164
>PLN02740 Alcohol dehydrogenase-like
Probab=72.25 E-value=25 Score=32.02 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=39.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...+++|...+|. ..|.-|.+++..|+.+|.+-++.+.. ++.+++.++.+|++.++
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVDI--NPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEcC--ChHHHHHHHHcCCcEEE
Confidence 44567777555554 46889999999999999853444322 45678888889986433
No 165
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.94 E-value=54 Score=29.17 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.+...++++...+|. .+|..|.+++..|+..|.+.++.+... +.+....+.+|++.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~ 214 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATD 214 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCce
Confidence 445566777555555 578899999999999999755554443 46677778888743
No 166
>PRK07062 short chain dehydrogenase; Provisional
Probab=71.85 E-value=61 Score=27.43 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=27.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..||+..+|--|.++|......|.+++++.+.
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 67889988999999999999999987766553
No 167
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=71.35 E-value=38 Score=29.59 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 29 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 29 g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+...+|...+|..|.+++..|+..|.++++..+. +.+.+.++.+|++-
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 194 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKE 194 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCE
Confidence 3355566666999999999999999986544333 45677777888743
No 168
>PRK12937 short chain dehydrogenase; Provisional
Probab=71.29 E-value=54 Score=27.22 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=45.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|..|.++|..-...|.+++++.....+ ....+.++.++.++..+..+ .+.++..+..++..++
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999999988776544322 12344556678877766532 2233333334444443
No 169
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=70.92 E-value=34 Score=32.22 Aligned_cols=54 Identities=7% Similarity=-0.128 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 9 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 9 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
--+|..+.+..+.+.-..+....+|+....||-|..+|.....+|.+++.+.+.
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 347788888777654333333468999999999999999999999888866544
No 170
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.68 E-value=74 Score=28.41 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.+.++...+|.+ +|..|.+++..|+.+|+ +++++.+ ++.+...++.+|++-
T Consensus 173 ~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~ 225 (361)
T cd08231 173 GPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADA 225 (361)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCe
Confidence 4444665666664 68999999999999999 5444422 456677778888743
No 171
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.43 E-value=45 Score=28.05 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=38.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|++++|.-|.+++......|.+++++.+.... ......++..|.++..+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 68899999999999999999999987766544211 223445566788876554
No 172
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=70.42 E-value=43 Score=29.10 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH--HHHH---HHHHHHcCCeEEEEe--cCCCCHHHHHHHHHcCCEEE
Q 023227 8 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNT--GIGL---AFMAAAKQYRLIITM--PASMSLERRIILRAFGAELV 80 (285)
Q Consensus 8 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~--g~a~---A~~a~~~G~~~~iv~--p~~~~~~~~~~~~~~Ga~v~ 80 (285)
++......++....+.+.- ..++..+--|- -..+ ...|+..|++.+++. |...+......++.+|-+.+
T Consensus 76 ~t~~~~lel~~~~r~~~~~----~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVK----VPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred CCHHHHHHHHHHHHhcCCC----CCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE
Confidence 4455566666666655542 23444444442 2222 446888888888875 33445556777788888776
Q ss_pred EeCCCCChHHHHHHHHH
Q 023227 81 LTDPAKGMKGAVQKAEE 97 (285)
Q Consensus 81 ~~~~~~~~~~~~~~a~~ 97 (285)
+.-....-+++++...+
T Consensus 152 ~lvaPtt~~~rl~~i~~ 168 (265)
T COG0159 152 FLVAPTTPDERLKKIAE 168 (265)
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 54322233344444433
No 173
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.16 E-value=30 Score=31.23 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=39.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...++++...+|. .+|..|.+++..|+.+|.+.++.+.. ++.+++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34556777565565 56899999999999999854444433 35677788889986443
No 174
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.92 E-value=46 Score=28.03 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=38.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
..||++.+|--|.++|..-.+.|.+++++............++..|.++..+..
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 678888888899999999989999987775443222334555667777655543
No 175
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=69.78 E-value=12 Score=36.27 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=41.3
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHcCCEEEEe
Q 023227 27 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS------------------MSLERRIILRAFGAELVLT 82 (285)
Q Consensus 27 ~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~------------------~~~~~~~~~~~~Ga~v~~~ 82 (285)
.+| +.|+.-.+|-.|.+.|..+++.|.+++++=... ....+++.++.+|++++.-
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 344 568888999999999999999999977763221 1235677788999987654
No 176
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.63 E-value=30 Score=30.94 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=37.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|--|+++|......|.+++++...... ....+.++..|.++..+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888888889999999999999997766543211 122345667888876543
No 177
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=69.57 E-value=37 Score=29.84 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=34.0
Q ss_pred eEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 023227 31 SVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 31 ~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~ 82 (285)
+.++. ..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-++.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEE
Confidence 44554 57788888888889999987544432 356777778888865444
No 178
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=69.53 E-value=36 Score=30.15 Aligned_cols=51 Identities=29% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 27 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 27 ~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.++...+|. ..|..|.++...|+.+|.+.++++ +.++.+.+.++.+|++.+
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 355455564 468899999999999998644444 345567777888888543
No 179
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.51 E-value=36 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.+.+.+|...+|. .+|..|.+++..++.+|..-++++.. .+.+++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44667777665565 56899999999999999854444333 4567788888888533
No 180
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.44 E-value=51 Score=28.20 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=37.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67888888999999999999999987776543211 122344555677766554
No 181
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.38 E-value=47 Score=27.93 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=44.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|--|.++|..-...|.+++++....... .....++..|.++..+..+ .+.++..+..++..++.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 678888888899999999889999877665432111 1233456667776655432 23334444455555543
No 182
>PRK07791 short chain dehydrogenase; Provisional
Probab=69.23 E-value=55 Score=28.35 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=44.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---------C-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHH
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---------M-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEIL 99 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---------~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~ 99 (285)
..|||..++--|.++|......|.+++++-... . .....+.++..|.++..+..+ .+.++..+..++..
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAAV 87 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 678999888899999999999999877764321 0 112234455667776555422 23444445555555
Q ss_pred HhC
Q 023227 100 AKT 102 (285)
Q Consensus 100 ~~~ 102 (285)
++.
T Consensus 88 ~~~ 90 (286)
T PRK07791 88 ETF 90 (286)
T ss_pred Hhc
Confidence 554
No 183
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=69.05 E-value=79 Score=27.63 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.+.+.++...+|....|..|.+++..|+.+|++++.+.+ ...+...++.+|++-
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQ 188 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCE
Confidence 3456677755556567788999999999999998665543 345566667788743
No 184
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.04 E-value=75 Score=27.39 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=37.0
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+...++++...+|.+ +|-.|.+++..|+..|.+.++++..+ +.+...++.+|++
T Consensus 122 ~~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~~--~~~~~~~~~~g~~ 176 (312)
T cd08269 122 FRRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDRR--PARLALARELGAT 176 (312)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCC--HHHHHHHHHhCCc
Confidence 3355566776666664 67799999999999999833333332 4566677778773
No 185
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=68.98 E-value=74 Score=27.80 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=38.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++...+|...+|-.|.+++..|+..|.+++++.+ ++.+...++.+|++
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 355677767777777888999999999999998655543 23556666777764
No 186
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=68.76 E-value=14 Score=27.58 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=11.8
Q ss_pred HHHHHHcCCEEEEeCC
Q 023227 69 RIILRAFGAELVLTDP 84 (285)
Q Consensus 69 ~~~~~~~Ga~v~~~~~ 84 (285)
++..+.+|++|+.++.
T Consensus 7 ~q~ak~~G~~vi~~~~ 22 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDR 22 (130)
T ss_dssp HHHHHHTTSEEEEEES
T ss_pred HHHHHHcCCEEEEEEC
Confidence 4566788888887775
No 187
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=68.68 E-value=23 Score=32.23 Aligned_cols=55 Identities=33% Similarity=0.366 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
..++++...+|...+|-.|.+++..|+.+|.+.+++.+ ++.+...++.+|++.++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 34566655566666799999999999999999765533 45778888889986544
No 188
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.52 E-value=54 Score=27.26 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+ .+.++..+..++..++
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888889999999999999999987776543211 11223345556666554432 2333333444444444
No 189
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=68.43 E-value=34 Score=30.82 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=39.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...+++|...+|. .+|..|.+++..|+.+|...++++.. .+.+++.++.+|++.++
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 33556777555555 56899999999999999843444433 24677888889985443
No 190
>PRK06836 aspartate aminotransferase; Provisional
Probab=68.31 E-value=70 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=31.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+..++++.+..++..+- +.-.-.|+++.-....-...++.+|++++.++.
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 4666667777776655432 222234555554434445667889999999875
No 191
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.17 E-value=38 Score=29.72 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...++++...+|. ..|..|.+++..++..|++++++.+.. .+.+.++.+|++
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCc
Confidence 45666777565664 578899999999999998766554443 566666778874
No 192
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.17 E-value=62 Score=28.50 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=44.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEI 98 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 98 (285)
..|||..++--|.++|..-...|.+++++-.... -....+.++..|.+++.+..+ .+.++..+...+.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 6788888888999999999999998777654311 112234556677766544321 2344455555555
Q ss_pred HHhC
Q 023227 99 LAKT 102 (285)
Q Consensus 99 ~~~~ 102 (285)
.++.
T Consensus 90 ~~~~ 93 (305)
T PRK08303 90 DREQ 93 (305)
T ss_pred HHHc
Confidence 5554
No 193
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=68.09 E-value=96 Score=28.23 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=44.4
Q ss_pred CCCCchhHHHHHHHHHHHHcCC---CCCCCeEEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL---ITPGESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~---~~~g~~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
|.|.-..|.+........ .|. +++. +.|+..+++..+..++..+- .-|=...|++|.-.-..-....+..|+++
T Consensus 63 ~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 456666665533222211 121 3332 34777777788877665542 23433456776533344445678899999
Q ss_pred EEeCC
Q 023227 80 VLTDP 84 (285)
Q Consensus 80 ~~~~~ 84 (285)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98864
No 194
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=67.89 E-value=1e+02 Score=28.49 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=45.6
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEecC
Q 023227 32 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYMLQ 109 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 109 (285)
.|+..+++..+..++..+-. -|= .|+++.-.-..-...++.+|++++.++-+. +++ .+..++...+....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGD--SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCC--EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 57777888888877665432 232 344444344556777889999999986421 222 122233323334566665
Q ss_pred -CCCCCC
Q 023227 110 -QFENPA 115 (285)
Q Consensus 110 -~~~~~~ 115 (285)
..+||.
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 444553
No 195
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.82 E-value=39 Score=29.85 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
..+.++...+|. ++|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 445566566666 578999999999999998434444 22456677778888854
No 196
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=67.09 E-value=52 Score=29.17 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 26 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.++...+|.+ +|-.|.+++..|+.+|.+.++++ +.++.+.+.++.+|++.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATY 209 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcE
Confidence 44555666654 57788888888999998745554 33567777778888743
No 197
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=66.92 E-value=65 Score=27.46 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchH
Q 023227 42 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 118 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (285)
|.++|.+.+++|+++.++-++..+...+..+..+ |..|.+..+... +....+.+.+..-....+..|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 4566777777777777665555556666666666 567766654321 1122233433322234455554322211
Q ss_pred hHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC----CcEEEEEe
Q 023227 119 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYGIE 169 (285)
Q Consensus 119 ~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----~~~vigv~ 169 (285)
. ..+. .++ .+. ..+|.|+... +.+.-.+...++...+ +.+++.+-
T Consensus 163 ~-~~~~-~~~-~~~-~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG 211 (248)
T COG1587 163 D-EATL-IEL-LKL-GEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIG 211 (248)
T ss_pred c-HHHH-HHH-HHh-CCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEec
Confidence 1 1111 111 122 4689998884 5556666666665543 25566553
No 198
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=66.80 E-value=46 Score=29.19 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...+.++...+|. ..|..|.+++..++..|++++++.+. ..+++.++.+|++.++
T Consensus 156 ~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 156 RDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITRS---PDKRELARKLGADEVV 211 (330)
T ss_pred HhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhCCcEEe
Confidence 33456666566666 45669999999999999986655433 4556666777765443
No 199
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=66.75 E-value=86 Score=27.19 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=36.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...++++...+|...+|..|.+++..|+.+|.+++.+.+. +.+.+.++.+|++
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 189 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGAD 189 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 44556666666666667889999999999999885444322 3345555666663
No 200
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=66.62 E-value=50 Score=27.79 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=36.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+.++|.-|.++|......|.+++++-+.... ......++..|.++..+.
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 68899999999999999999999987665433211 122334555677776554
No 201
>PRK10083 putative oxidoreductase; Provisional
Probab=66.61 E-value=70 Score=28.18 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
.+...+.++...+|.+ +|-.|.+++..|+. +|.+.++.+.. ++.+.+.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 4455677775555555 67788888888886 59887666544 46778888889985443
No 202
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.40 E-value=48 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|++++|.-|.+++......|.+++++.+.
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999999999998877664
No 203
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.39 E-value=74 Score=29.62 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023227 29 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 101 (285)
Q Consensus 29 g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 101 (285)
+...||+..+|.-|.++|......|.+++++-............+.++.+.+.++-. +.++..+...+..++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 346788888899999999999999999777644332222233345577777777753 333333333444333
No 204
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=66.36 E-value=49 Score=28.86 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=37.4
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 28 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 28 ~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
++...+|...+|..|.+++..|+.+|.+++++.. ++.+.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 3445566666799999999999999998655543 34677778889985433
No 205
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=66.12 E-value=36 Score=31.29 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.++..+||-.++-.|...-.- |=++.++....-...-.+.++.+|++++.++.
T Consensus 58 ~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 444455554444444433222 44555554444344445555666666665553
No 206
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.08 E-value=64 Score=27.78 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=43.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..|||..+|--|.++|..-...|.+++++...... ......++..|.++..+..+ .+.++..+...+..++.
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 57899988999999999999999987665433211 11233455667777655432 23333444444444443
No 207
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=66.07 E-value=60 Score=27.66 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe-------CCCCChHHHHHHHHHHHHhCCCeEecCCCC--CC-
Q 023227 45 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT-------DPAKGMKGAVQKAEEILAKTPNAYMLQQFE--NP- 114 (285)
Q Consensus 45 ~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~- 114 (285)
++.+-++.|-++.++ .-+.-..+++.+ +|.+=..+ .+...+.+++- --++.++.++++... +-
T Consensus 23 ig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALI----kDKr~~nL~lLPAsQtrdKd 95 (272)
T COG2894 23 IGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALI----KDKRLENLFLLPASQTRDKD 95 (272)
T ss_pred HHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhh----ccccCCceEecccccccCcc
Confidence 333344567666554 666666677765 66644332 22222222221 112233555544332 21
Q ss_pred CchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhh--CCCcEEEEEecCCCCc
Q 023227 115 ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK--NPNIKLYGIEPTESPV 175 (285)
Q Consensus 115 ~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~--~~~~~vigv~~~~~~~ 175 (285)
....++...+..|+-+ ..+|+|+|-+ .+||=++|+.. .-+--++.+.|+-++.
T Consensus 96 alt~E~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSsV 150 (272)
T COG2894 96 ALTPEGVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSSV 150 (272)
T ss_pred cCCHHHHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCcccc
Confidence 1224566655555433 4599999864 67888888875 2345677777777653
No 208
>PRK12828 short chain dehydrogenase; Provisional
Probab=65.88 E-value=68 Score=26.35 Aligned_cols=54 Identities=19% Similarity=0.010 Sum_probs=38.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|++++|--|.+++......|.+++++.+...+ ...+..++..+.+++.++-
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 67889999999999999988889997666553222 1234445666777777664
No 209
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=65.84 E-value=53 Score=28.61 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
..+.++...+|...+|..|.+++..++..|.+++++.+. +.+...++.+|.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 556677667777778999999999999999987666532 3445555666653
No 210
>PLN00175 aminotransferase family protein; Provisional
Probab=65.75 E-value=1.1e+02 Score=28.16 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=43.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhCCCeEecCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
.|+..+++..+..++..+- +.-.-.|+++.-.-..-...++..|++++.++-. .++.-..+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 3666677777776666543 3222344444433445566778899999988642 1121111222222222335566655
Q ss_pred CCCCC
Q 023227 111 FENPA 115 (285)
Q Consensus 111 ~~~~~ 115 (285)
.+||.
T Consensus 196 p~NPt 200 (413)
T PLN00175 196 PHNPT 200 (413)
T ss_pred CCCCC
Confidence 45554
No 211
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.69 E-value=72 Score=26.59 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=38.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+..+|.-|+++|..-...|.+++++...+.+. ...+.++..|.++..+..
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKA 61 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 678999999999999999999999887654433221 223456667887766543
No 212
>PRK06128 oxidoreductase; Provisional
Probab=65.66 E-value=90 Score=27.17 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=45.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|--|.++|..-...|.++++..... .. ......++..|.+++.+..+ .+.++..+...+..++.
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 688999999999999999999999987654322 11 22345566778777665432 23333344444444433
No 213
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=65.62 E-value=93 Score=27.15 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=37.2
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++...+|. .+|..|.+++..|+..|+++++ +..+.+..+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 3455666566664 4688999999999999988543 3233346677777888873
No 214
>PRK06114 short chain dehydrogenase; Provisional
Probab=65.48 E-value=82 Score=26.49 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=37.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~ 83 (285)
..||+.++|--|.++|..-...|.++++..+.... ....+.++..|.++..+.
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 67889888889999999999999988877554321 223445666677665554
No 215
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=65.48 E-value=38 Score=28.31 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 37 TSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 37 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
+++--|+++|....+.|.++++.-..... ....+..+.+|.+++.++-. +.++..+...+..++.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~ 70 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVERF 70 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhhc
Confidence 45668999999999999998887655322 12234456788888777753 3334444445554443
No 216
>PRK05867 short chain dehydrogenase; Provisional
Probab=65.37 E-value=61 Score=27.25 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=42.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..||+.++|.-|.++|..-...|.+++++-..... ......++..|.++..+..+ .+.++..+...+..++
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899988999999999998999987666433211 11233445567666554322 2333344444444444
No 217
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=65.31 E-value=86 Score=26.67 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++++...++...+|..|.++...++..|++.+.+.+. ..+...++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 345667777665666778889999999999999985555333 3566666778874
No 218
>PRK09134 short chain dehydrogenase; Provisional
Probab=65.30 E-value=78 Score=26.66 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=37.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~ 83 (285)
..+|++.+|.-|..++....+.|.+++++...+.+. .-...++..|.++..+.
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 679999999999999999999999887765543221 12233445577776554
No 219
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.25 E-value=67 Score=26.53 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+.++|..|.+++......|.+++++.....+ ......++..+.++..+..
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQG 62 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEc
Confidence 67889999999999999988889987666654322 1223345556777776653
No 220
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.19 E-value=53 Score=27.86 Aligned_cols=71 Identities=15% Similarity=0.026 Sum_probs=43.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+..+ .+..+..+...+..++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999987666332211 11233455667777655432 2333334444444444
No 221
>PRK06194 hypothetical protein; Provisional
Probab=65.07 E-value=77 Score=27.18 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..|||+.+|.-|.++|......|.+++++-..... ......+...|.++..+..+ .+.++..+...+..++
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999988899987666432211 12233444557777655542 2333333334444343
No 222
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.05 E-value=55 Score=34.01 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
.+.|+.-.+|-.|.+.|+..++.|++++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 36788899999999999999999999999943
No 223
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=65.02 E-value=44 Score=31.29 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.8
Q ss_pred EEEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 023227 32 VLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 32 ~vv~~ss---GN~g~a~A~~a~~~-G~~~~iv~p~~~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
+|+.... +|.+.+++..++.+ |++++++.|+.- +...++.++..|..+..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 4444444 69999999996665 999999999864 4455666777898887766
No 224
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=64.97 E-value=93 Score=26.96 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH-----HHHHHHHHcCCeEEEEec--CCCCHHHHHHHHHcCCEEE
Q 023227 8 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI-----GLAFMAAAKQYRLIITMP--ASMSLERRIILRAFGAELV 80 (285)
Q Consensus 8 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~-----a~A~~a~~~G~~~~iv~p--~~~~~~~~~~~~~~Ga~v~ 80 (285)
++.+...-++....++.. ...++..+--|.-. .....|+..|+..+|+.+ -..+..-...++.+|-..+
T Consensus 69 ~~~~~~~~~~~~ir~~~~----~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 69 FTLEKIFELVKEIRKKEP----DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLI 144 (259)
T ss_dssp --HHHHHHHHHHHHHHCT----SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEE
T ss_pred CCHHHHHHHHHHHhccCC----CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEE
Confidence 444555555555552322 13455555555322 245556667777766632 2223334455666776655
Q ss_pred E
Q 023227 81 L 81 (285)
Q Consensus 81 ~ 81 (285)
.
T Consensus 145 ~ 145 (259)
T PF00290_consen 145 P 145 (259)
T ss_dssp E
T ss_pred E
Confidence 3
No 225
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.86 E-value=58 Score=29.91 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChH-HHHHHHHHHHHhCCCeEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMK-GAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~-~~~~~a~~~~~~~~~~~~~ 108 (285)
+..+..+||-.+..+|+.+-..|=--.|++|.-+.......+-..||+.+++|-+. ++. +....-+.+..+...-..+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe
Confidence 57788889988888888755577667899999999999999999999999998542 232 1111112222222123456
Q ss_pred CCCCCCCc
Q 023227 109 QQFENPAN 116 (285)
Q Consensus 109 ~~~~~~~~ 116 (285)
+-+++|..
T Consensus 130 hl~G~~~d 137 (374)
T COG0399 130 HLAGQPCD 137 (374)
T ss_pred hhccCCCC
Confidence 66667665
No 226
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=64.70 E-value=41 Score=29.09 Aligned_cols=53 Identities=9% Similarity=-0.135 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 10 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 10 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
-||..+.+..+.+.-.......+|+...-||-|..+|.....+|.+++.+...
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 47777888776654444444468999999999999999999999988877653
No 227
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=64.57 E-value=79 Score=27.80 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.+...++++...+|.+ +|-.|.+++..|+. .|.+++.+.+ ++.+.+.++.+|++.+
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLT 211 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 3445567776666666 68899998888887 4987555533 3466777788887544
No 228
>PRK07806 short chain dehydrogenase; Provisional
Probab=64.53 E-value=83 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~ 83 (285)
..+|++.+|--|.+++......|.+++++....... .-...++..|.++..+.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 678889889999999999888999987775542211 11233455576665544
No 229
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.27 E-value=61 Score=27.97 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.+.++...+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 445666566666677999999999999999985554333 355666677887443
No 230
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=64.20 E-value=58 Score=26.72 Aligned_cols=130 Identities=18% Similarity=0.085 Sum_probs=74.8
Q ss_pred HhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCccC-------CCCCCCccccccCCCCCcc--Ccc
Q 023227 129 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------GGKPGPHKIQGIGAGFVPG--VLE 199 (285)
Q Consensus 129 ~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-------~~~~~~~~~~gl~~~~~~~--~~~ 199 (285)
+..|...++-++.-+|.|+..-++-.+ ..+|..|++++|......-. -+..+-..++|-++...+. ..+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 455666788889888888876666444 56899999999965543110 0112222333433322221 122
Q ss_pred cccCCeEEEeCHHHHHHHHHHHHHhcCCeeeh-hHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCC
Q 023227 200 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 264 (285)
Q Consensus 200 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~~p-~~g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 264 (285)
.-++.+. .+-+++++++....+.-|-++=- .+=-.++.+++..++.... .++-+.-+.|.+
T Consensus 105 aiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~--ei~~v~is~~~~ 166 (187)
T COG2242 105 AIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR--EIVQVQISRGKP 166 (187)
T ss_pred EEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc--eEEEEEeeccee
Confidence 2233444 78888898888877766654444 5666666666666553222 555544355554
No 231
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=64.15 E-value=40 Score=28.30 Aligned_cols=55 Identities=31% Similarity=0.327 Sum_probs=38.0
Q ss_pred HHHcCCCCCCCeEEEee-CCC---hHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q 023227 20 AEAKGLITPGESVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 77 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~-ssG---N~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga 77 (285)
|+..|-- .+.+|++ |.| .+..|||.+|++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 35 AlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 4444541 2455555 444 36899999999999999999998654 345566666665
No 232
>PRK05866 short chain dehydrogenase; Provisional
Probab=64.14 E-value=65 Score=28.09 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=42.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|++.+|--|.++|......|.+++++...... ......++..|.++..+..+ .+.++..+..++..++
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888888999999999988899988777554211 11223344456665554332 1233333344444444
No 233
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.14 E-value=77 Score=27.20 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=40.4
Q ss_pred eEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEE-EEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAEL-VLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..|||..++ .-|+++|....+.|.+++++-.......+++.+ +..|..+ +.++- .+.++..+...+..++.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKKW 83 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHHh
Confidence 578888765 689999999999999887764322112233333 3346433 23333 23344444445554443
No 234
>PLN02702 L-idonate 5-dehydrogenase
Probab=64.12 E-value=68 Score=28.79 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+...+.++...+|. ..|..|.++...++.+|.+.++.+.. ++.+...++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 44556666566666 56889999999999999986555544 46777778888886543
No 235
>PRK08862 short chain dehydrogenase; Provisional
Probab=63.94 E-value=56 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=34.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 82 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~ 82 (285)
..+|++.++.-|+++|......|.+++++-+.... ....+.++..|.+++.+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 67888888889999999999999987665332211 11234455667665544
No 236
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=63.86 E-value=89 Score=26.35 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=45.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+.++|--|.++|......|.+++++.+.+.+. .....++..|.++..+..+ .+..+..+...+..++.
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999999887765543222 2234456667776654321 23333333344444443
No 237
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=63.85 E-value=57 Score=28.46 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=36.0
Q ss_pred CCCCC-eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 26 ITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 26 ~~~g~-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.++. ..+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 56665 55666667999999999999999986555433 3445666778874
No 238
>PLN02827 Alcohol dehydrogenase-like
Probab=63.82 E-value=62 Score=29.43 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.+.+.+|...+|. ..|--|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 34556777555555 46889999999999999865555433 3567778888998543
No 239
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=63.77 E-value=1e+02 Score=27.08 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=35.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 77 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga 77 (285)
+...+.++...+|. .+|-.|.+++..|+..|++++++.+ ++.+...++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 44556677666666 4677888888899999988655533 2556666666765
No 240
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=63.76 E-value=43 Score=28.11 Aligned_cols=53 Identities=15% Similarity=-0.027 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 11 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 11 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
||..+.+..+.++-..+....+++...-||-|..+|......|.+.+.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56777777665432233334678889999999999999999999888887654
No 241
>PRK06483 dihydromonapterin reductase; Provisional
Probab=63.69 E-value=84 Score=25.99 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=44.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 101 (285)
..||++.+|--|.++|......|.+++++-... ....+.++..|++.+.++-. +.++..+...+..++
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQH 71 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHhh
Confidence 578899889999999999888999888765432 22345556678777666642 333334444444444
No 242
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.61 E-value=92 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.087 Sum_probs=38.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 84 (285)
..||+..+|.-|.++|..-...|.++++.-..... ......++..|.+++.+..
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 69 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAG 69 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeC
Confidence 67899999999999999988899987765432211 2234556777888876654
No 243
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=63.55 E-value=69 Score=27.79 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=36.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++...+|...+|..|.+++..|+..|.+.+++.+.. .+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCC
Confidence 34456665656666778899999999999998876554432 445556667763
No 244
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=63.49 E-value=81 Score=27.82 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=31.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.++.-..|+.|++++..++.+|.+++++-+. +.+....+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 34555666888888888888888866665333 344566667777643
No 245
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=63.48 E-value=50 Score=28.92 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 59 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv 59 (285)
.....++++...+|...+|..|.+++..|+..|.+++++
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 344556777666666667999999999999999986554
No 246
>PRK12939 short chain dehydrogenase; Provisional
Probab=63.40 E-value=64 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=35.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|.++|......|.+++++-..... ......++..+.++..+.
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888999999999999999999987666332111 122334455676665554
No 247
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=63.31 E-value=1.1e+02 Score=27.82 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=44.5
Q ss_pred CCCCCchhHHHHHHHHHHHHcCC--CCCCCeE-EEeeCCChHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHcC
Q 023227 3 EPCSSVKDRIGYSMISDAEAKGL--ITPGESV-LIEPTSGNTGIGLAFMAA---AKQYRLIITMPASMSLERRIILRAFG 76 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~g~--~~~g~~~-vv~~ssGN~g~a~A~~a~---~~G~~~~iv~p~~~~~~~~~~~~~~G 76 (285)
.+.|....|.+..... ...+. +.+. +. ++..+++.+|..++..+- .-| -.|+++.-.-+.-...++.+|
T Consensus 67 ~~~G~~~lR~aia~~~--~~~~~~~~~~~-~i~v~iT~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~~~~~~~~~~g 141 (396)
T PRK09257 67 PIEGLAAYRQAVQELL--FGADSPALAAG-RVATVQTPGGTGALRVGADFLKRAFPD--AKVWVSDPTWPNHRAIFEAAG 141 (396)
T ss_pred CCCCCHHHHHHHHHHh--cCCCCcccccC-eEEEEecCCccHHHHHHHHHHHHhCCC--CeEEECCCCcccHHHHHHHcC
Confidence 3567777776543322 22221 2342 22 366777788887776332 234 245555544555677788999
Q ss_pred CEEEEeC
Q 023227 77 AELVLTD 83 (285)
Q Consensus 77 a~v~~~~ 83 (285)
++++.++
T Consensus 142 ~~~v~v~ 148 (396)
T PRK09257 142 LEVKTYP 148 (396)
T ss_pred CcEEEEe
Confidence 9999886
No 248
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.02 E-value=1.1e+02 Score=27.30 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=28.1
Q ss_pred hHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC-CcEEEEEe
Q 023227 124 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLYGIE 169 (285)
Q Consensus 124 ~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~-~~~vigv~ 169 (285)
...++++.- +++|.||++ +...+.|+..++++.+. +++|+|..
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 344555443 568899987 34445578889888753 56777764
No 249
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=62.90 E-value=97 Score=27.87 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
...++++...+|. .+|..|.++...|+.+|.+.++.+.. ++.|...++.+|++.+
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 3456666555555 56889999999999999875544443 3567777788887533
No 250
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=62.57 E-value=82 Score=26.43 Aligned_cols=71 Identities=18% Similarity=0.045 Sum_probs=42.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..||+..+|.-|.++|......|.+++++-..... ......++..+.++..+..+ .+.+...+...++.++
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 67999999999999999999999887765433211 11223445556666554322 2333333334444444
No 251
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.50 E-value=74 Score=28.05 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=39.8
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+...++++...+|.+ +|-.|.++...++..|.+.++.+.. ++.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 3456667776666664 5889999999999999886655443 46777777888874
No 252
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=62.31 E-value=53 Score=26.37 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=44.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-----~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+...|..|..+|..-...|-.-++++... .....++.++..|++|....-+ .+.++..+...++.++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 457888889999999999777765555555443 2235688899999999877643 23333333334444343
No 253
>PRK08912 hypothetical protein; Provisional
Probab=62.21 E-value=1.2e+02 Score=27.41 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=43.3
Q ss_pred CCCCchhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~ 82 (285)
+.|.-..|.+...... ...|. +.|. ..|+..+++..+..++..+-. +-.-.|+++.-.-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4565566655332221 11232 3332 146777777888766665532 222345555544445566779999999887
Q ss_pred CC
Q 023227 83 DP 84 (285)
Q Consensus 83 ~~ 84 (285)
+.
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 254
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=62.21 E-value=81 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=37.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+.++|.-|.+++......|.+++++...... ......++..+.++..+.
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67889999999999999988889987776554211 223344566676665554
No 255
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=62.10 E-value=1.1e+02 Score=26.71 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAE 78 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~-~Ga~ 78 (285)
+.+.++...+|...+|-.|.+++..|+..|.+++++.+ ++.+...++. +|++
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 45666656666666788999999999999997555533 2355666666 7764
No 256
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=61.92 E-value=49 Score=26.49 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=53.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
+.++...-|+-|+++|...+.+|.+++|+ +..+.+..+..+.|-++...+ + .+.+ .+ +++.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~~-ad-i~vta 85 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALRD-AD-IFVTA 85 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTTT--S-EEEE-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHhh-CC-EEEEC
Confidence 56888999999999999999999888777 235667667777787764221 1 1122 23 33322
Q ss_pred CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCc
Q 023227 111 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 146 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~G 146 (285)
..+. ..+-.|.++|++ .+.|++.+|.-
T Consensus 86 TG~~-------~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNK-------DVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred CCCc-------cccCHHHHHHhc--CCeEEeccCcC
Confidence 2222 224568888884 57888888764
No 257
>PRK06108 aspartate aminotransferase; Provisional
Probab=61.87 E-value=1.2e+02 Score=27.23 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCCchhHHHHHHHHHHHHcC-CCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKG-LITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g-~~~~g~~~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.|....|.+....... ..| .+.+ +.|+..+++..+..++..+-. -|- .|+++.-.-..-...++.+|++++.
T Consensus 60 ~~G~~~lr~~la~~~~~-~~~~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~ 134 (382)
T PRK06108 60 NLGIPELREALARYVSR-LHGVATPP--ERIAVTSSGVQALMLAAQALVGPGD--EVVAVTPLWPNLVAAPKILGARVVC 134 (382)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCc--ceEEEeCChHHHHHHHHHHhcCCCC--EEEEeCCCccchHHHHHHCCCEEEE
Confidence 34555666553332221 123 2333 357777788888777766532 232 3444332223345567889999988
Q ss_pred eCC
Q 023227 82 TDP 84 (285)
Q Consensus 82 ~~~ 84 (285)
++.
T Consensus 135 v~~ 137 (382)
T PRK06108 135 VPL 137 (382)
T ss_pred eeC
Confidence 764
No 258
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.79 E-value=75 Score=26.53 Aligned_cols=52 Identities=31% Similarity=0.497 Sum_probs=35.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
..+.++...++...++ .|.+++..++..|.+++++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 3345665666666666 9999999999999776655443 35556666676543
No 259
>PLN02342 ornithine carbamoyltransferase
Probab=61.66 E-value=52 Score=29.86 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEeC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~~~~~Ga-~v~~~~ 83 (285)
+.|.++ |.+..+.+-..|.+++++.+++++|++++++.|+.- +...++.++..|. ++...+
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 346543 323333344468999999999999999999999853 3445555666674 665554
No 260
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.61 E-value=37 Score=31.80 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=40.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-----~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+.-.+||.|.-+|..++++|.+++++.+.. .....++.++..|.+++.-.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 468888999999999999999999998887652 12334566778888876543
No 261
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=61.39 E-value=98 Score=26.16 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=41.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~-~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|.-|.++|......|.+++++-.. ..+++.++. ++.++..+..+ .+.+...+..++..++
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 67888988999999999999999987766332 233443433 45555544321 2233333344444444
No 262
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=61.30 E-value=1.2e+02 Score=27.21 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=49.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 108 (285)
.+++.+++|..|.-.|+.=-.. |=++.++.-..-...-.+..+.+|++|..++.+..-. .-....+.+++-.++.+++
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4678888886555544433222 4445555444444555778899999999886432111 1233445566666778888
Q ss_pred CCCCCC
Q 023227 109 QQFENP 114 (285)
Q Consensus 109 ~~~~~~ 114 (285)
.+.++.
T Consensus 149 ~hgdsS 154 (385)
T KOG2862|consen 149 THGDSS 154 (385)
T ss_pred EecCcc
Confidence 776653
No 263
>PRK06181 short chain dehydrogenase; Provisional
Probab=61.15 E-value=65 Score=27.16 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|.+++......|.+++++.+.... ....+.++..+.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888999999999999998999987776544211 112334555677766554
No 264
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=61.13 E-value=1.3e+02 Score=27.19 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=63.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++|..-..||.|.++|...+..|++++++.+..... ....+..|.++. + .. +.+++- +..++.-
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~~~--s----~~-------eaa~~A-DVVvLaV 81 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFEVL--T----VA-------EAAKWA-DVIMILL 81 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCeeC--C----HH-------HHHhcC-CEEEEcC
Confidence 356667889999999999999999988876654322 233455676431 1 11 222332 4443311
Q ss_pred CCCCCchHhHHhchH-HHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCc
Q 023227 111 FENPANPKIHYETTG-PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV 175 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~-~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~ 175 (285)
|. ..+..+. .+|...+. ++.++ .+..|-++. .......++++|+-|.|..+..
T Consensus 82 ---Pd---~~~~~V~~~~I~~~Lk--~g~iL-~~a~G~~i~---~~~~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 82 ---PD---EVQAEVYEEEIEPNLK--EGAAL-AFAHGFNIH---FGQIVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred ---CH---HHHHHHHHHHHHhcCC--CCCEE-EECCCCChh---hceeccCCCCcEEEeCCCCCch
Confidence 11 1123333 45655552 44444 333332222 1212223467899999888764
No 265
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=61.10 E-value=57 Score=28.98 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=41.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHH-HHHcCCEEEEeC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII-LRAFGAELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~-~~~~Ga~v~~~~ 83 (285)
+.|.++ |.+..+.+-.+|..++++..++++|++++++.|+.-. ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 346543 3343344445899999999999999999999998532 223332 466788887665
No 266
>PRK10537 voltage-gated potassium channel; Provisional
Probab=61.02 E-value=1.4e+02 Score=27.66 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=57.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++++.+..|+.|..++-.-+..|.+++++.++. .+.....|.+++.-
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-----~~~~~~~g~~vI~G---------------------------- 287 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-----LEHRLPDDADLIPG---------------------------- 287 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch-----hhhhccCCCcEEEe----------------------------
Confidence 678999999999999888778888888886541 11112222222222
Q ss_pred CCCCCchHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEe
Q 023227 111 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 169 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~ 169 (285)
|+.. .|.+++.+ .+.+.+++....=..-.-+....|+.+|+.++++..
T Consensus 288 --D~td---------~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 288 --DSSD---------SAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred --CCCC---------HHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 2221 13344432 235667766665444444666788888888888763
No 267
>PRK05826 pyruvate kinase; Provisional
Probab=61.01 E-value=1.4e+02 Score=28.42 Aligned_cols=124 Identities=12% Similarity=0.127 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCeEec
Q 023227 44 GLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 44 a~A~~a~~~G~~~~iv-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~~~ 108 (285)
-+...|++.|.++.+- .|..+.-..+...-..|++-+...++. .| .++.+...+.+++....++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455689999998874 344444455667777899888776432 22 34555444444332221111
Q ss_pred ----CCCCCC-CchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCC
Q 023227 109 ----QQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 172 (285)
Q Consensus 109 ----~~~~~~-~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 172 (285)
...... ..........+.++.++++ ..+.||+..-+|.++--++++ .|.+.|+++.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk~----RP~~pI~~~t~~~ 406 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISRF----RPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHhh----CCCCCEEEEcCCH
Confidence 110011 1112344555667777773 167899999899876665543 5889999997543
No 268
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=60.94 E-value=88 Score=27.48 Aligned_cols=63 Identities=17% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 13 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 13 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...+..+.+....+...++++.-..|+.|+++|..++.+|.+++++-+. ..+......+|.+
T Consensus 134 Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 134 AEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 44445455443211222356777778899999999999999876655332 2344445555654
No 269
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.92 E-value=84 Score=27.82 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.+...++++...+|. .+|-.|.+++..|+.+|.+.++++.. ++.+...++.+|++-
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 210 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATH 210 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 456777888666665 45778999999999999884444332 245566666677753
No 270
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=60.92 E-value=63 Score=28.38 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 29 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 29 g~~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+...+|...+|..|.++...|+.+ |.+++.+.+. +.+.+.++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 556666666788999998889987 8886665433 35566667788743
No 271
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=60.92 E-value=65 Score=29.15 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=35.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++..+..++..+....=+-.|+++.-+-..-...++.+|++++.++.
T Consensus 92 ~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 92 ANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 347777777777766555544322224566665556667778999999999874
No 272
>PRK05839 hypothetical protein; Provisional
Probab=60.90 E-value=1.3e+02 Score=27.23 Aligned_cols=78 Identities=10% Similarity=-0.108 Sum_probs=41.8
Q ss_pred CCCCchhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
|.|....|.+...... .+.|. +.+ +.|+..+++..+..+...+-.+ +-.-.|++|.-.-..-...++.+|++++.
T Consensus 59 ~~G~~~lr~aia~~l~-~~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFK-RRFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 3465666655322221 22232 344 4566666666666554443332 12234555543444455667899999999
Q ss_pred eCC
Q 023227 82 TDP 84 (285)
Q Consensus 82 ~~~ 84 (285)
++-
T Consensus 136 v~~ 138 (374)
T PRK05839 136 MPL 138 (374)
T ss_pred eec
Confidence 864
No 273
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.65 E-value=67 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=25.1
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..|||..+ +.-|+++|....+.|.++++.-+
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 56788766 67999999999999999776643
No 274
>PRK06172 short chain dehydrogenase; Provisional
Probab=60.62 E-value=75 Score=26.61 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=37.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|.++|......|.+++++...... ......++..+.++..+.
T Consensus 9 ~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 9 VALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 67888899999999999999999987776543221 122445566777766544
No 275
>PRK08643 acetoin reductase; Validated
Probab=60.49 E-value=90 Score=26.16 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-~~~~~~~~Ga~v~~~~ 83 (285)
..||+.++|.-|.++|......|.+++++-....... ....++..+.++..+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 5788899999999999999999998766654322211 2233455667766554
No 276
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=60.35 E-value=99 Score=25.68 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=37.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+.++|.-|.++|......|.+++++...+.. ...+..++..|.++....
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEE
Confidence 56899999999999999999999987765543221 123445566787776543
No 277
>PRK12744 short chain dehydrogenase; Provisional
Probab=60.33 E-value=84 Score=26.45 Aligned_cols=71 Identities=23% Similarity=0.103 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CH----HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SL----ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~----~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|.-|.++|..-...|.+++++..... .. ...+.++..+.++..+..+ .+.++..+...+..++
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 6788888899999999998889999766653211 11 2234455667777655432 2333333444444333
No 278
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=60.24 E-value=43 Score=26.64 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=40.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.++.-.+||-|...+..+..+|.+.+++- ....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcc
Confidence 57777899999999999999999977762 246777888899998888753
No 279
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.19 E-value=75 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.067 Sum_probs=36.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|--|.++|......|.+++++-+... .....+.++..|.++..+.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 6788888899999999999999998666543321 1122344556687765544
No 280
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=60.14 E-value=1.6e+02 Score=28.31 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHHHc-CCCCCCC-eEEEeeCCChHHHHHHHHHH----Hc--CCeEEEEecCCCCHHHHHHHHH
Q 023227 3 EPCSSVKDRIGYSMISDAEAK-GLITPGE-SVLIEPTSGNTGIGLAFMAA----AK--QYRLIITMPASMSLERRIILRA 74 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~-g~~~~g~-~~vv~~ssGN~g~a~A~~a~----~~--G~~~~iv~p~~~~~~~~~~~~~ 74 (285)
.|.|....|-+...-....+. +...+.. ..|+...++..+..++..+- .+ |=++.+..|.-.+-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 466766666543321112222 2222321 15888888888888876651 22 3333344344322222333445
Q ss_pred cCCEEEEeCC
Q 023227 75 FGAELVLTDP 84 (285)
Q Consensus 75 ~Ga~v~~~~~ 84 (285)
+|.+++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 6888887653
No 281
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=60.12 E-value=67 Score=29.04 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=39.0
Q ss_pred EEEeeCC---ChHHHHHHHH-HHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 023227 32 VLIEPTS---GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 32 ~vv~~ss---GN~g~a~A~~-a~~~G~~~~iv~p~~~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
+|+.... +|.+.+++.. ++.+|++++++.|+.. +...++.++..|..+..+.
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 4444444 6889999976 6677999999999853 5555666777898887776
No 282
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.82 E-value=1e+02 Score=25.61 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+.++|..|.+++......|.+++++...
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999998999997666554
No 283
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.71 E-value=86 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=36.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+.++|..|.+++......|.+++++.+...+. .....++..+.+++.+..
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATA 63 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEEC
Confidence 578888999999999999888999877765442211 123344556777765543
No 284
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=59.59 E-value=26 Score=27.78 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=36.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+|++.+|+.|..++......|.+++++++...+... ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 678889999999999999999999999987543332 55666665553
No 285
>PRK14031 glutamate dehydrogenase; Provisional
Probab=59.43 E-value=48 Score=31.14 Aligned_cols=53 Identities=9% Similarity=-0.088 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 10 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 10 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
-||..+.+..+.+...+.....+|+....||-|..+|.....+|.+++++-+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 47788888776544333555578999999999999999999999999998773
No 286
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=59.40 E-value=99 Score=25.42 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=37.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-~~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|..|..++......|.+++++.+...... ....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 6789999999999999998889999655544322211 2344556777776654
No 287
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=59.31 E-value=76 Score=27.21 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=47.9
Q ss_pred HHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEe---cCCCCCCCch
Q 023227 43 IGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM---LQQFENPANP 117 (285)
Q Consensus 43 ~a~A~~a~~~--G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~ 117 (285)
..+.++++.+ |.+..-+-..+--..-++.....|..|.+++... ....+.++.+.+++ +.-. -++|.++.-
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e- 145 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ- 145 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH-
Confidence 4566676665 4331111111111223444566788999998632 33444555566665 4322 233332211
Q ss_pred HhHHhchHHHHHhhhC-CCCCEEEEccCCcc
Q 023227 118 KIHYETTGPELWKGSG-GRIDALVSGIGTGG 147 (285)
Q Consensus 118 ~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg 147 (285)
-.+|.+++. ..||.++++.|.-=
T Consensus 146 -------~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 146 -------RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred -------HHHHHHHHHhcCCCEEEEECCCcH
Confidence 123555543 35999999998743
No 288
>PRK07890 short chain dehydrogenase; Provisional
Probab=59.23 E-value=74 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
...+|+.++|.-|+++|......|.+++++-..... ......++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 367899999999999999999999987766543211 112233444566655444
No 289
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=59.19 E-value=73 Score=28.17 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 26 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
++++...+|. ..|..|.+++..|+.+|++++++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666555664 46889999999999999975555333 3556666778875443
No 290
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.13 E-value=1.2e+02 Score=26.42 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHcCCeEEEEecCCCC-----HHHHHHHHHcCCEEEEeCC
Q 023227 49 AAAKQYRLIITMPASMS-----LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 49 a~~~G~~~~iv~p~~~~-----~~~~~~~~~~Ga~v~~~~~ 84 (285)
-+..|+++..+ |.... ..-...++..+.++++++.
T Consensus 49 i~~~g~~v~~~-~~~~~~~~d~~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 49 LLSAGFPVYEL-PDESSRYDDALELINLLEEEKFDILIVDH 88 (279)
T ss_pred HHHcCCeEEEe-cCCCchhhhHHHHHHHHHhcCCCEEEEcC
Confidence 35667765554 33221 1244556666777777775
No 291
>PRK05693 short chain dehydrogenase; Provisional
Probab=59.08 E-value=1.1e+02 Score=25.96 Aligned_cols=67 Identities=30% Similarity=0.187 Sum_probs=44.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 101 (285)
..||++.+|-.|.++|......|.+++++.+. ..++..+...+.+.+.++-. +.++..+...+..++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 46888888889999999999999987776543 34455556667776666642 333333444444333
No 292
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.92 E-value=70 Score=26.78 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH---HHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHH
Q 023227 25 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILA 100 (285)
Q Consensus 25 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~ 100 (285)
.++|+ +.|.+-.+| .|...|..|+..| .|+.-+..+. .-.+.++.+|- +|.+.-++..
T Consensus 69 ~~~~g-~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~------------- 130 (209)
T COG2518 69 ELKPG-DRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS------------- 130 (209)
T ss_pred CCCCC-CeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc-------------
Confidence 35666 457777666 6788888888888 3333232221 12344677777 5555443211
Q ss_pred hCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCC
Q 023227 101 KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 145 (285)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~ 145 (285)
.||---.||+--.. ..+-.++=.-+++||+ .--.+|+|+|+
T Consensus 131 --~G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 --KGWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred --cCCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 02222223321111 2233444445789984 34578999984
No 293
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.91 E-value=73 Score=28.19 Aligned_cols=49 Identities=29% Similarity=0.336 Sum_probs=33.9
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 27 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 27 ~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.++...+|.+ .|..|.+++..|+.+|.+.++++. .++.|....+.+|++
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 210 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIASD--PNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCcc
Confidence 4555566654 588899999999999985444442 355677777778874
No 294
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=58.88 E-value=71 Score=28.92 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.+.++++...+|. ..|..|.+++..++.+|..-++++.. .+.+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44556777555555 67889999999999999843444432 35677777888884
No 295
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=58.51 E-value=78 Score=28.60 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=37.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+...+.++...+| ...|..|.+++..|+.+|...++++.. +..|.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVDH--VPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCeE
Confidence 4445566655555 566889999999999999754444433 467778888888843
No 296
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=58.50 E-value=49 Score=31.75 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=40.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
..++.-..|..|++.+..++.+|..++++ .. ...+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~-d~--~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF-DT--RPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-eC--CHHHHHHHHHcCCeEEeccc
Confidence 45677788999999999999999885554 22 35578888999999877763
No 297
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=58.34 E-value=1.1e+02 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=36.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 84 (285)
+|+..+|.-|.++|......|.+++++.....+ ......++..+.++..+..
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQF 55 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEc
Confidence 688888889999999999999997766543322 1223445566777765543
No 298
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=58.01 E-value=93 Score=25.87 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=37.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+..+|--|.++|......|.++++....... ......++..|.++.++.-
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67888989999999999988899987765433211 1123455667778876654
No 299
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=57.95 E-value=1e+02 Score=25.83 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=40.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|++.+|..|.++|......|.+++++... +.++..+ ...+.++..+..+ .+.++..+...+..++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999987766443 2333333 2345555444321 2333333444444443
No 300
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=57.95 E-value=79 Score=27.88 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=35.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
..+.+.++...++. .+|-.|.++...|+..|...++.+ ..+..+...++.+|++
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 34556677666664 457788898889999997444444 2245666777777754
No 301
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=57.75 E-value=87 Score=25.70 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCC
Q 023227 26 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTP 103 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~-~~~~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~ 103 (285)
++|| +.+++-..|.-+.++-++...-..+++.+=.. ..-....+.++.+|. ++..+.++. -+....+. .+
T Consensus 32 ~~~g-~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A-----p~~L~~~~--~~ 103 (187)
T COG2242 32 PRPG-DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA-----PEALPDLP--SP 103 (187)
T ss_pred CCCC-CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc-----hHhhcCCC--CC
Confidence 4555 57888777777777777733334444444222 222334455677776 455555421 11111111 24
Q ss_pred CeEecCCCCCCCchHhHHhchHHHHH-hhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCC
Q 023227 104 NAYMLQQFENPANPKIHYETTGPELW-KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 174 (285)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~t~~~EI~-~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~ 174 (285)
+..|+....+ + . --+|.+ +-+ ..-..+|+-+-+=-+++-+...+++++-. .|+-++...+.
T Consensus 104 daiFIGGg~~----i---~-~ile~~~~~l-~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 104 DAIFIGGGGN----I---E-EILEAAWERL-KPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred CEEEECCCCC----H---H-HHHHHHHHHc-CcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecce
Confidence 6666654321 1 1 112222 222 22356777766666677777777777654 66666655554
No 302
>PRK08278 short chain dehydrogenase; Provisional
Probab=57.72 E-value=1.2e+02 Score=25.89 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=37.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--------~~~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|--|.++|......|.+++++.+...+. .....++..|.+++.+.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 678888888899999999999999988776543211 11234566777766554
No 303
>PRK08017 oxidoreductase; Provisional
Probab=57.71 E-value=1.1e+02 Score=25.49 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=38.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|++.+|--|.++|......|.+++++.+. ..+++.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 56888888999999999988899987665443 3455566667887777764
No 304
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.53 E-value=87 Score=26.98 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.+.++...+|.+.+|..|.+++..|+..|.+++.+.+. .+.+.++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 445666566666667999999999999999986655432 556666777763
No 305
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.48 E-value=1.1e+02 Score=25.46 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=43.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|.-|.++|..-...|.+++++.....+ ......++..+.++..+..+ .+.++..+...+..++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46888999999999999988889988777644322 22344455567666555432 2233333344444443
No 306
>PLN02527 aspartate carbamoyltransferase
Probab=57.36 E-value=71 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 023227 22 AKGLITPGESVLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ss---GN~g~a~A~~a~~~-G~~~~iv~p~~~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
..|.++ | .+|+.... +|.+++++.+++++ |++++++.|+.. ++..++.++..|.++..++
T Consensus 145 ~~g~l~-g-~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 EIGRLD-G-IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred HhCCcC-C-CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 345543 3 34444443 46899999998887 999999999863 4455556666788877665
No 307
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.13 E-value=98 Score=25.85 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.-+ .+.++..+...+..++.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999987766543211 12233445556665544321 23333333444444443
No 308
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=57.13 E-value=1.2e+02 Score=25.64 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC--CcEEEEE
Q 023227 126 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGI 168 (285)
Q Consensus 126 ~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigv 168 (285)
.+++++- +.+|.|++. ...+.|+..++++.+. +++|+|.
T Consensus 176 ~~~l~~~-~~~~~i~~~---d~~a~~~~~~l~~~g~p~di~vig~ 216 (268)
T cd06306 176 EEALEAH-PDIDYIVGS---AVAAEAAVGILRQRGLTDQIKIVST 216 (268)
T ss_pred HHHHHhC-CCcCEEeec---chhhhHHHHHHHhcCCCCCeEEEec
Confidence 3444332 457888753 5667788888887752 5677765
No 309
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=56.91 E-value=1.4e+02 Score=26.27 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 25 LITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 25 ~~~~g~~~vv~~ssGN~g~a~A~~a~~~G-~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.++...+|.. +|..|.+++..|+..| .+++++.+ ++.+.+.++.+|++
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 345565666666 5669999999999998 67655433 24566677888864
No 310
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=56.77 E-value=83 Score=23.72 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhc
Q 023227 45 LAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 123 (285)
Q Consensus 45 ~A~~a~~~G~~~~iv~p~~~~~~~~~~-~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 123 (285)
++...+..+.+..|+..........+. ....+.+++.-.+ .++.+++..+.+.+.+......+-..+.|.... -+-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l- 78 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDL- 78 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHH-
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHH-
Confidence 345566778888888766444443333 5556666666554 478888888866664333455666666776632 222
Q ss_pred hHHHHHhhhCCCCCEEEEccCCcc
Q 023227 124 TGPELWKGSGGRIDALVSGIGTGG 147 (285)
Q Consensus 124 ~~~EI~~q~~~~~d~iv~~vG~Gg 147 (285)
.+.++.+ ...|.|+.|+--||
T Consensus 79 --~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 79 --EQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp --HHHHHHT-TT-SEEEEEBTTSS
T ss_pred --HHHHHHh-ccCCEEEeeccCCC
Confidence 2334444 34599999998887
No 311
>CHL00194 ycf39 Ycf39; Provisional
Probab=56.75 E-value=51 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=28.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
+.+|++.+|.-|..++......|.+++++.+.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46899999999999999998999998888765
No 312
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.70 E-value=90 Score=26.17 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=36.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
...+|+..+|.-|.++|......|.+++++-+.... ..-...++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367888899999999999988899987776553211 122334555676555443
No 313
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=56.57 E-value=1.4e+02 Score=26.85 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...+.++...+|. ..|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34556777666665 57889999999999999876555433 45667777888874
No 314
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=56.50 E-value=91 Score=25.90 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=36.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+..+|.-|.++|..-...|.+++++........ ....++..+.++..+..
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 6789999999999999999899998777654321111 12334555666665544
No 315
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=56.21 E-value=1.3e+02 Score=25.69 Aligned_cols=53 Identities=32% Similarity=0.419 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++...+|...+|..|.+++..++.+|.+++++.. ++.+.+.++.+|++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 183 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGAD 183 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCC
Confidence 355666656666666788999999999999987555432 34556666777763
No 316
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.13 E-value=1.3e+02 Score=25.58 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=40.7
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-Hc-CCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AF-GAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~-~~-Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+.++ +.-|.++|..-.+.|.++++.-.......+++.+. .. |.+++.+.-+ .+.++..+..++..++.
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 56787754 67999999999999998776543322233344332 22 4455443321 23334444455555554
No 317
>PRK06720 hypothetical protein; Provisional
Probab=55.98 E-value=1e+02 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=23.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 60 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~ 60 (285)
..+|++.++--|.++|......|.+++++-
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 678888888789999988877887765553
No 318
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.94 E-value=1.3e+02 Score=26.39 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=37.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...+.++...+|. .+|..|.+++..|+.+|++.++++.. ++.+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44556677565665 56888999999999999884444433 34566666777765
No 319
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=55.76 E-value=41 Score=30.62 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 27 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 27 ~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+++. +|+...+|..|.+++..|+.+|.+++++.+. ++.+.+.++.+|++.+
T Consensus 177 ~~g~-~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGK-RLGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCC-EEEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 3554 4444556888988888999999875444332 2334566677888543
No 320
>PRK07677 short chain dehydrogenase; Provisional
Probab=55.41 E-value=99 Score=25.89 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=34.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~ 83 (285)
..||++.+|.-|.++|......|.+++++-...... .....++..+.+++.+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 578889889999999999999999766654332111 12223444566665543
No 321
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=55.40 E-value=1.1e+02 Score=26.24 Aligned_cols=49 Identities=29% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 28 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 28 ~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
++...++.+.+|..|.+++..|+.+|.+++...+ .+.+...++.+|+.-
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3556666677799999999999999998555433 356777788888863
No 322
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.10 E-value=91 Score=27.69 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 83 (285)
+.|.++ |.+..+.+-.+|..++++.+++++|++++++.|+.. +....+. .+..|+++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345543 323333333379999999999999999999999853 2333333 355788887665
No 323
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=55.04 E-value=1.3e+02 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=26.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..||++++|.-|.++|..-...|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999998888998776644
No 324
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=54.70 E-value=1.4e+02 Score=25.60 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.+.++...+|...+|..|.+++..++..|.++++..+. ..+.+.++.+|++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 556666667777777889999999999999876555333 3455555666653
No 325
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=54.66 E-value=1.7e+02 Score=26.55 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=42.9
Q ss_pred EEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeEec
Q 023227 32 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~-~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~ 108 (285)
.|+..+++..+..++..+-. -|= .|+++.-.-..-...++..|++++.++-. ..+....+...+........+++
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 171 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVL 171 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEE
Confidence 46666777777766655421 232 23334323334456678899999988642 12221122222222223466777
Q ss_pred CCCCCCCc
Q 023227 109 QQFENPAN 116 (285)
Q Consensus 109 ~~~~~~~~ 116 (285)
+..+||..
T Consensus 172 ~~p~NPTG 179 (388)
T PRK07366 172 SYPHNPTT 179 (388)
T ss_pred eCCCCCCC
Confidence 66566643
No 326
>PRK07814 short chain dehydrogenase; Provisional
Probab=54.60 E-value=1e+02 Score=26.13 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 82 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~ 82 (285)
..||++++|--|.++|......|.+++++.+.... ......++..|.++..+
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 67899999999999999988899987776543211 11223344446555543
No 327
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.52 E-value=1.5e+02 Score=27.74 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 023227 42 GIGLAFMAAAKQYRLIITM 60 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~ 60 (285)
+.-+|.+.+..|.++.++-
T Consensus 117 aaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 117 CTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred HHHHHHHHHHCCCCEEEEc
Confidence 3344444555565555543
No 328
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=54.51 E-value=1.4e+02 Score=25.61 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=37.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.+.+.++...+|...+|..|.+++..++..|.+++++.+. ..+...++.+|++
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGAD 186 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 45667777667777777889999999999999886555332 3344455666653
No 329
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.47 E-value=80 Score=31.17 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHH-HHHcCC------CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C----
Q 023227 6 SSVKDRIGYSMISD-AEAKGL------ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---- 65 (285)
Q Consensus 6 GS~K~R~a~~~~~~-a~~~g~------~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---------~---- 65 (285)
++.-+|.+.-.+.+ +.+.|. ..+..+.|+.-.+|-.|.+.|+..++.|.+++||-.... +
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l 358 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKL 358 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccC
Confidence 45556666555543 444432 122235688889999999999999999999988854321 1
Q ss_pred -----HHHHHHHHHcCCEEEEeC
Q 023227 66 -----LERRIILRAFGAELVLTD 83 (285)
Q Consensus 66 -----~~~~~~~~~~Ga~v~~~~ 83 (285)
...++.++.+|.+++.-.
T Consensus 359 ~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 359 DKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CHHHHHHHHHHHHHCCeEEEcCC
Confidence 124567788888776543
No 330
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=54.40 E-value=1.3e+02 Score=26.50 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=34.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 77 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga 77 (285)
...+.++...+|.+ .|..|.++...|+.+|++++++.+. ..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 34456665666666 6888888888899898876555333 445566666776
No 331
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=54.27 E-value=83 Score=27.77 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 29 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 29 g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...+|...+|..|.+++..|+.+|++++++... .+...++.+|.+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 6566666667899999999999999986655432 356666777764
No 332
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=54.26 E-value=74 Score=22.34 Aligned_cols=76 Identities=8% Similarity=0.071 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEEEe
Q 023227 6 SSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF--MAAAKQYRLIITMPASMSLERRIILRAF-GAELVLT 82 (285)
Q Consensus 6 GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~--~a~~~G~~~~iv~p~~~~~~~~~~~~~~-Ga~v~~~ 82 (285)
|..+.-.+..++........ .+.++.+++-|+.-+++. .|.+.+.|..++- ...+......++.+ ..+|+.+
T Consensus 5 G~dRyeTs~~va~~~~~~~~----~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 5 GADRYETSAKVAKKFYPDNK----SDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCHHHHHHHHHHHhcccCC----CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEE
Confidence 44444455555555322221 256777777666655555 5677888877776 77788888888887 4588888
Q ss_pred CCCC
Q 023227 83 DPAK 86 (285)
Q Consensus 83 ~~~~ 86 (285)
++..
T Consensus 80 Gg~~ 83 (92)
T PF04122_consen 80 GGEG 83 (92)
T ss_pred CCCC
Confidence 7643
No 333
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.23 E-value=1.1e+02 Score=26.69 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=45.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH--HHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER--RIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~--~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..|||+.|+.-|.++|..-++.|.+++++-+....... .+.-+.+|.+|....-+ .+.++..+...++.++
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 67899988889999999999999999999876432221 12224456666555432 2233444444455443
No 334
>PRK06701 short chain dehydrogenase; Provisional
Probab=54.21 E-value=1.5e+02 Score=25.76 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=38.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|--|.++|....+.|.+++++...... ......++..|.++..+.
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 67888888999999999998999998777554322 223345566677776554
No 335
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=54.12 E-value=73 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=28.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 65 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~ 65 (285)
+..+.+-.+|.++++..+++++|++++++.|+..+
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 43444455899999999999999999999998754
No 336
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=54.08 E-value=82 Score=30.35 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=40.6
Q ss_pred EEEeeCC---ChHHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 023227 32 VLIEPTS---GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 32 ~vv~~ss---GN~g~a~A~~a~~~G-~~~~iv~p~~~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
+|+.... +|.+++++.+++++| ++++++.|+.- +...++.++..|+.+..+.
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 4444444 799999999999998 99999999864 4455677777899888766
No 337
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=54.08 E-value=47 Score=30.22 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=39.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.++..++|..+..++..+...+-.-.|++|.-+-......++..|+++++++-
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 467778888888766655433333356788887777778888999999999975
No 338
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=54.04 E-value=90 Score=27.64 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=35.8
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 27 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 27 ~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
.++...+|...+|-.|.+++..|+.+|++.+.+. . +.+.+.++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 4565666666678899999999999999866554 2 25666677888743
No 339
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.02 E-value=1.7e+02 Score=26.41 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=76.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 101 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 101 (285)
...+++|| ++++...=|--|.|++.-|+..|-.=+|=++- ++.|.+..+.+|++=..-+
T Consensus 186 ~~Akv~~G-stvAVfGLG~VGLav~~Gaka~GAsrIIgvDi--N~~Kf~~ak~fGaTe~iNp------------------ 244 (375)
T KOG0022|consen 186 NTAKVEPG-STVAVFGLGGVGLAVAMGAKAAGASRIIGVDI--NPDKFEKAKEFGATEFINP------------------ 244 (375)
T ss_pred hhcccCCC-CEEEEEecchHHHHHHHhHHhcCcccEEEEec--CHHHHHHHHhcCcceecCh------------------
Confidence 33446776 57888888889999999999888777766554 4667777777777422222
Q ss_pred CCCeEecCCCCCCCchHhHHhchHHH-HHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCC
Q 023227 102 TPNAYMLQQFENPANPKIHYETTGPE-LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 174 (285)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~g~~t~~~E-I~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~ 174 (285)
-+-. .. ..| |.|..++.+|+-|=++|+=.++.-.....+.-+-..-++||.+.+..
T Consensus 245 ---------~d~~-------~~-i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 245 ---------KDLK-------KP-IQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ---------hhcc-------cc-HHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 1000 01 112 22333456899999998877777766677766777889999887764
No 340
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=53.98 E-value=93 Score=27.38 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVL 81 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-~~~~~~~~~~~Ga~v~~ 81 (285)
+.+.++...+|...+|..|.+++..|+.+|.++++...... -..+...++.+|++-++
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 44566655555556789999999999999998776655321 12455666778875443
No 341
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=53.64 E-value=1.2e+02 Score=25.58 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 84 (285)
..+|+..+|--|.++|..-...|.+++++...... +.....++..+.++..+..
T Consensus 14 ~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 14 TALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67899888999999999988899987665443211 1122334566777665543
No 342
>PRK09414 glutamate dehydrogenase; Provisional
Probab=53.61 E-value=67 Score=30.24 Aligned_cols=52 Identities=10% Similarity=-0.125 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 10 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 10 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
-||..+.+..+.+.........+|+...-||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4778888877765544444456889899999999999999889988888765
No 343
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.49 E-value=54 Score=24.07 Aligned_cols=92 Identities=24% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEecCCCCCCCchH
Q 023227 42 GIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 118 (285)
Q Consensus 42 g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (285)
...+|.+.++.|+++.++ ....+ ..-.+.++....+++.+.. ...+....+.++...+..++...+ .
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------V 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------E
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------E
Confidence 445666677789988866 33333 4455678888998887764 223344555555544444443332 2
Q ss_pred hH-HhchHHH-HHhhhCCCCCEEEEccC
Q 023227 119 IH-YETTGPE-LWKGSGGRIDALVSGIG 144 (285)
Q Consensus 119 ~g-~~t~~~E-I~~q~~~~~d~iv~~vG 144 (285)
.| +.+..+| +++.. ..+|+++..=|
T Consensus 87 GG~~~t~~~~~~l~~~-~~~D~vv~Geg 113 (121)
T PF02310_consen 87 GGPHATADPEEILREY-PGIDYVVRGEG 113 (121)
T ss_dssp EESSSGHHHHHHHHHH-HTSEEEEEETT
T ss_pred ECCchhcChHHHhccC-cCcceecCCCh
Confidence 33 2344444 44432 24788777654
No 344
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=53.46 E-value=1.1e+02 Score=26.54 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=34.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
..+|...+|..|.+++..|+..|.+++++.+ +..+...++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 4566666799999999999999998544433 3456777788887443
No 345
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=53.34 E-value=1.4e+02 Score=25.11 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------------C-----HHHHHHHHH
Q 023227 15 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------------S-----LERRIILRA 74 (285)
Q Consensus 15 ~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---------------~-----~~~~~~~~~ 74 (285)
..+....+++. +.|+...+.....+++-.+...+++++.+..... + ..-.+.++.
T Consensus 57 ~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (298)
T cd06268 57 AAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAE 131 (298)
T ss_pred HHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHH
Confidence 33444455444 5666555555556777788888888765532210 0 011334455
Q ss_pred cC--CEEEEeCCCCChH-HHHHHHHHHHHhCCCeEecCC-CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH
Q 023227 75 FG--AELVLTDPAKGMK-GAVQKAEEILAKTPNAYMLQQ-FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 150 (285)
Q Consensus 75 ~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a 150 (285)
.+ .+|.++.....+. +..+..++..++. +.-.+.. ..++. ..-+.....+|.+ ..+|.|++. +.+....
T Consensus 132 ~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~--~~~~~~~~~~l~~---~~~~~vi~~-~~~~~~~ 204 (298)
T cd06268 132 KGKVKKVAIIYDDYAYGRGLAAAFREALKKL-GGEVVAEETYPPG--ATDFSPLIAKLKA---AGPDAVFLA-GYGGDAA 204 (298)
T ss_pred hcCCCEEEEEEcCCchhHHHHHHHHHHHHHc-CCEEEEEeccCCC--CccHHHHHHHHHh---cCCCEEEEc-cccchHH
Confidence 54 4666664432222 2333344444444 3211111 11111 0112223333322 347887776 4557788
Q ss_pred HHHHHHHhhCCCcEEEEEecCCC
Q 023227 151 GAGKFLKEKNPNIKLYGIEPTES 173 (285)
Q Consensus 151 Gi~~~~k~~~~~~~vigv~~~~~ 173 (285)
++.+.+++.+.++++++......
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 205 LFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHHcCCCCcEEecCccCC
Confidence 89999998877788888765433
No 346
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.29 E-value=1.3e+02 Score=25.13 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=37.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|..|.++|..-...|.+++++.+...+. .....++..+.++..+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678899999999999999888899887776543222 22334555677765444
No 347
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=53.29 E-value=96 Score=28.03 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHH----HcCCEEEEeC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTD 83 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~~~----~~Ga~v~~~~ 83 (285)
.+.+-..|.++++...++++|++++++.|+.- +...+..++ ..|.++....
T Consensus 158 ~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 158 VFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 33333379999999999999999999999853 333444433 4688887665
No 348
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.16 E-value=1.4e+02 Score=25.09 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=44.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..+|+..+|--|.++|..-...|.+++++.... ....+.++..+...+.++-. +.++..+...+..++.
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKEF 77 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHHc
Confidence 678888889999999999889999877664433 33445555556666666642 3334444444444443
No 349
>PRK06841 short chain dehydrogenase; Provisional
Probab=53.08 E-value=1.3e+02 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+..+|--|.++|......|.+++++-+.
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888999999999999999987666443
No 350
>PRK06500 short chain dehydrogenase; Provisional
Probab=52.97 E-value=1.3e+02 Score=24.88 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=34.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~-~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|-.|.+++......|.+++++... ..++ ...+.+|.++..+.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 8 TALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 67889999999999999999999987665432 2222 23345577765443
No 351
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.95 E-value=1.1e+02 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+..+|.-|.++|......|.+++++...
T Consensus 11 ~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 11 VALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888899999999999999999987766543
No 352
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.83 E-value=1.1e+02 Score=26.00 Aligned_cols=37 Identities=14% Similarity=-0.061 Sum_probs=20.1
Q ss_pred HHHHHHcCCeEEEEec---C--CCCHHHHHHHHHcCCEEEEe
Q 023227 46 AFMAAAKQYRLIITMP---A--SMSLERRIILRAFGAELVLT 82 (285)
Q Consensus 46 A~~a~~~G~~~~iv~p---~--~~~~~~~~~~~~~Ga~v~~~ 82 (285)
.-.++..|.+.+++.. + .....-++.++.+|.+....
T Consensus 94 i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4445667777766641 1 11223455667777766543
No 353
>PRK12831 putative oxidoreductase; Provisional
Probab=52.66 E-value=65 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=39.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---C--CHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---M--SLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~---~--~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+.-.+||.|.-+|..+.++|.+++++.+.. . ....++.++..|.+++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 468888999999999999999999988887643 1 2234455677788776543
No 354
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.64 E-value=1.3e+02 Score=24.88 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=41.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|++.+|--|.++|..-...|.+++++...... ......++ .+.++..+..+ .+.+...+...+..++
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999888889887666543211 11222233 46666554432 2333333444444443
No 355
>PRK06198 short chain dehydrogenase; Provisional
Probab=52.48 E-value=1.4e+02 Score=25.01 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=36.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|..+|......|.+.++++..+... .....++..+.++..+.
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 578888889999999999999999844444443221 22335566788875544
No 356
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=52.44 E-value=89 Score=27.77 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCeEEEEe---cCCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCe-EecCCCCCC
Q 023227 44 GLAFMAAAKQYRLIITM---PASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENP 114 (285)
Q Consensus 44 a~A~~a~~~G~~~~iv~---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 114 (285)
+..|.++.+|++..-++ ++.. ++. -++.++..+..++++++... .+.++.++++.+.. ..++++.+.
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~----~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR----PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC----hHHHHHHHHhcCCeEEEecccccc
Confidence 78899999999987554 2322 222 36677899999999997432 23455666665322 345666544
Q ss_pred Cch-HhHHhchHHHHHhhh
Q 023227 115 ANP-KIHYETTGPELWKGS 132 (285)
Q Consensus 115 ~~~-~~g~~t~~~EI~~q~ 132 (285)
... ...|..+..+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 321 145777776666655
No 357
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.38 E-value=81 Score=28.43 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 81 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~ 81 (285)
+.+++|.. |+....|.-|.++...|+.+|.+++++.... ..+....+.+|++-++
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456644 4446668899999999999998755543322 2334455678885443
No 358
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=52.17 E-value=1.1e+02 Score=25.39 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=43.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+.++|.-|.++|..-.+.|.++++....+.. ......++..+.++..+..+ .+..+..+...++.+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSA 77 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHh
Confidence 57888889999999999988899887665433321 12234456677776655432 2233333344444433
No 359
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.13 E-value=83 Score=26.63 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=34.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEEe
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMS--LERRIILRAFGA-ELVLT 82 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~--~~~~~~~~~~Ga-~v~~~ 82 (285)
..+|++.+|--|.++|...... |.+++++.....+ ....+.++..|. ++..+
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 5788888888999999887777 4888777554322 122344555554 45444
No 360
>PRK09242 tropinone reductase; Provisional
Probab=52.02 E-value=1.4e+02 Score=24.97 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=41.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHc--CCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAF--GAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~-~~~~~~~~--Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..+|+..+|.-|.++|......|.+++++........ ....++.. +.++..+..+ .+.++..+...+..++.
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888899999999999999998766654321111 12233333 5666655432 22233333344444443
No 361
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=51.99 E-value=1.7e+02 Score=26.00 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=53.4
Q ss_pred CCCCchhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCe---EEEEecCCCCHHHHHHHHHcCCEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYR---LIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~---~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
|.|.-+.|.+..-... ...|. +.++ ..|+..+++..+.-++..+ .++-. -.|++|.-.-..-...++.+|+++
T Consensus 35 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~-~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 35 ALGTKALREAISGWFE-RRFGVKLDPD-AQVLPSAGSKEAIFHFPLV-FIDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEcCChHHHHHHHHHH-HcCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 4566666655332221 22242 3332 1466666666665554432 22321 256665544455566678999999
Q ss_pred EEeCCC--CChHHHHHHHHHHHHhCCCeEecCCCCCCC
Q 023227 80 VLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPA 115 (285)
Q Consensus 80 ~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 115 (285)
+.++-. .++.-..+..++..++.....++...+||.
T Consensus 112 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPt 149 (350)
T TIGR03537 112 TAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPT 149 (350)
T ss_pred EEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCc
Confidence 988642 222111122222223333566766444553
No 362
>PLN02253 xanthoxin dehydrogenase
Probab=51.98 E-value=1.1e+02 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..|||..+|.-|.++|......|.+++++-.
T Consensus 20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 20 VALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 6799999999999999999899998777643
No 363
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.82 E-value=1.2e+02 Score=26.39 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH-----HHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEE
Q 023227 8 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG-----LAFMAAAKQYRLIITMPA--SMSLERRIILRAFGAELV 80 (285)
Q Consensus 8 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a-----~A~~a~~~G~~~~iv~p~--~~~~~~~~~~~~~Ga~v~ 80 (285)
++......++...+++ . . ..++..+--|--.+ ...-|+..|++.+++... .....-...++.+|.+.+
T Consensus 74 ~~~~~~~~~~~~~r~~-~---~-~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 74 INLNKILSILSEVNGE-I---K-APIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred CCHHHHHHHHHHHhcC-C---C-CCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 3344445555554422 1 1 23566777775444 456688899999888543 223345677889998776
Q ss_pred E-eCCCCChHHHHHHHHHHHHhCCCeEec
Q 023227 81 L-TDPAKGMKGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 81 ~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 108 (285)
+ +.+.. -.+++ +++++.-.+..|+
T Consensus 149 ~lv~PtT-~~eri---~~i~~~a~gFIY~ 173 (263)
T CHL00200 149 LLIAPTS-SKSRI---QKIARAAPGCIYL 173 (263)
T ss_pred EEECCCC-CHHHH---HHHHHhCCCcEEE
Confidence 4 44432 23333 4444444455554
No 364
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.73 E-value=1.1e+02 Score=25.48 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~ 83 (285)
..||+.++|--|.+++......|.++++....... ...+..++..|.++..+.
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 67888888999999999988899987765543221 223455667777765544
No 365
>PRK08264 short chain dehydrogenase; Validated
Probab=51.68 E-value=79 Score=26.13 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCC-eEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~ 62 (285)
..+|+..+|.-|.++|......|. +++++.+.
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 678899999999999999999998 76666543
No 366
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.67 E-value=1.7e+02 Score=25.72 Aligned_cols=53 Identities=30% Similarity=0.368 Sum_probs=34.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 77 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga 77 (285)
+...+.++...+|.+ +|-.|.+++..|+..|++.++++.. ++.+...++.+|.
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~ 211 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGA 211 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCC
Confidence 344567776666664 6778999888999999884443322 3445555566665
No 367
>PRK05650 short chain dehydrogenase; Provisional
Probab=51.66 E-value=1.4e+02 Score=25.23 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|++++|.-|.++|..-...|.+++++...... ......++..|.++..+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQR 55 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 35888999999999999988899997776544321 122344566677765554
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.63 E-value=68 Score=29.97 Aligned_cols=9 Identities=33% Similarity=0.113 Sum_probs=4.3
Q ss_pred EEEEccCCc
Q 023227 138 ALVSGIGTG 146 (285)
Q Consensus 138 ~iv~~vG~G 146 (285)
++|++..++
T Consensus 335 ~LVl~a~~~ 343 (424)
T PRK05703 335 YLVLSATTK 343 (424)
T ss_pred EEEEECCCC
Confidence 455554443
No 369
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=51.51 E-value=1.8e+02 Score=26.00 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=96.1
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC-EEEEeCCCCChHH--HHHHHHHHHHhCCCe-EecC
Q 023227 34 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGMKG--AVQKAEEILAKTPNA-YMLQ 109 (285)
Q Consensus 34 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~~--~~~~a~~~~~~~~~~-~~~~ 109 (285)
++++|+|.-.-+-++ ++-+-++|.|..--...+ .+..|. +|+..++.....+ ..+...++.+++|+. ..++
T Consensus 142 i~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yv--a~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvH 216 (324)
T COG0379 142 ICCTSSNAVKVVESA---LDGDKILFLPDKNLGRYV--AKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVH 216 (324)
T ss_pred eEEecchHHHHHHhc---cCCCcEEEcCcHHHHHHH--HHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEEC
Confidence 457788887777766 777889999985433333 356777 9999886432222 134456677778775 4567
Q ss_pred CCCCCCchHh--HHhchH--HHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCC--CCccCCCCCCC
Q 023227 110 QFENPANPKI--HYETTG--PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE--SPVLSGGKPGP 183 (285)
Q Consensus 110 ~~~~~~~~~~--g~~t~~--~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~--~~~~~~~~~~~ 183 (285)
|...|..... .-++++ .+..++. ..+-+++. |=.|+..-++...|+.+++...+.+ |+.|.. .+
T Consensus 217 PEC~~~Vv~~AD~vGST~~ii~~~~~~--~~~~~iv~-----TE~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk~--it- 286 (324)
T COG0379 217 PECPPEVVELADFVGSTSQIIKAVKAS--PAQKFIVG-----TERGIVHRLQKEAPDKEFIPLPTAGAVCPTMKM--IT- 286 (324)
T ss_pred CCCCHHHHHhccccccHHHHHHHHhcC--CCceEEEE-----ecHHHHHHHHHHCCCCeEEccCCCCCcChhhhh--hC-
Confidence 6655433111 112222 2323332 34555553 5578899999999999999888775 333311 00
Q ss_pred ccccccCCCCCccCccc---ccCCeEEEeCHHHHHHHHHHHHHh
Q 023227 184 HKIQGIGAGFVPGVLEV---NIIDEVVQVSSDEAIETAKLLALK 224 (285)
Q Consensus 184 ~~~~gl~~~~~~~~~~~---~~~d~~~~v~d~e~~~a~~~l~~~ 224 (285)
...+.+ +.....+.|+++-+..+.+-+-|.
T Consensus 287 -----------L~~i~~~L~~~~~~eV~V~~~i~~~A~~aleRM 319 (324)
T COG0379 287 -----------LEKILEALEEGGNNEVTVDEEIAERARRALERM 319 (324)
T ss_pred -----------HHHHHHHHHhCCCceEEeCHHHHHHHHHHHHHH
Confidence 011111 111146888888877777776554
No 370
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=51.47 E-value=1.5e+02 Score=25.02 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=42.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHH-HcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILR-AFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~-~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+.+++.-|.++|..-...|.+++++.+.+.+. .....++ ..|.++..+.-+ .+.++..+...+..++.
T Consensus 10 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 678888888899999999999999977664433211 1122232 346665544322 23444444455555544
No 371
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.34 E-value=1.6e+02 Score=25.28 Aligned_cols=71 Identities=20% Similarity=0.034 Sum_probs=40.5
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAE-LVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..||+.++ +--|.++|......|.++++.-.......+++.+ +.+|.. .+.++- .+.++..+...++.++.
T Consensus 12 ~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl-~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 12 RGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDV-TDEASIDAVFETLEKKW 86 (272)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCC-CCHHHHHHHHHHHHHhc
Confidence 56777764 5699999999999999876653322123344444 334542 233443 23444455555555544
No 372
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.31 E-value=34 Score=26.26 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCCCeEEEeeCCChHHHHH--HHHHHHcCCeEEEEe
Q 023227 26 ITPGESVLIEPTSGNTGIGL--AFMAAAKQYRLIITM 60 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~--A~~a~~~G~~~~iv~ 60 (285)
++||+--|+.++|||...-+ +..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45665555666778877655 555999999998774
No 373
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=51.29 E-value=86 Score=26.83 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=15.0
Q ss_pred CeEEEeeCCChHHHHHH--HHHHHcCCeEE
Q 023227 30 ESVLIEPTSGNTGIGLA--FMAAAKQYRLI 57 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A--~~a~~~G~~~~ 57 (285)
++.+|+.-.-|..+|.. -+++..|-+..
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~ 36 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELA 36 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEE
Confidence 36777776666555433 33444444443
No 374
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=51.24 E-value=67 Score=29.57 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=34.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHc
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF 75 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~--~~~iv~p~~~~~~~~~~~~~~ 75 (285)
+..+++|.+.+|...+|--|..+...|+.+|. ..++++. .++.|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~--~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD--VNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc--CCHHHHHHHHHh
Confidence 34567776666666678899999999999875 2233332 245677777775
No 375
>PRK05717 oxidoreductase; Validated
Probab=51.22 E-value=1.5e+02 Score=24.89 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=41.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..+|+..+|.-|.++|..-...|.+++++-... .......+..+.+++.+..+ .+.++..+...++.++.
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999998877663321 11222334456555544432 22333333344444443
No 376
>PRK05957 aspartate aminotransferase; Provisional
Probab=50.83 E-value=1.9e+02 Score=26.20 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=30.4
Q ss_pred eEEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 85 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 85 (285)
+.|+..++++.+..++..+- .-| -.|+++.-.-......++..|++++.++.+
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~g--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPG--DEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCC--CEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 45777777778776555432 224 234443321222344567899999988653
No 377
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=50.63 E-value=1.5e+02 Score=27.22 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=74.3
Q ss_pred CCCCCchhHHHHHHHHHHH----HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 3 EPCSSVKDRIGYSMISDAE----AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~----~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
|-.|.+..-.+++.+...+ ..|..-. .++|..-+-||-|..+|..++.+|+++..+=|..... +..
T Consensus 86 napg~na~aVAE~~~~~lL~l~r~~g~~L~-gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~ 155 (378)
T PRK15438 86 AAPGCNAIAVVEYVFSSLLMLAERDGFSLH-DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDE 155 (378)
T ss_pred ECCCcCchHHHHHHHHHHHHHhccCCCCcC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccc
Confidence 3345666667777766433 2232122 3578888899999999999999999999884431100 110
Q ss_pred EEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH--HHHHHH
Q 023227 79 LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFL 156 (285)
Q Consensus 79 v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a--Gi~~~~ 156 (285)
..+ .+. .++.++- +...++---++.....-+.-+..+.+++| +++.+++-+|-|+.+- .+..++
T Consensus 156 ~~~----~~L-------~ell~~s-DiI~lh~PLt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 156 GDF----RSL-------DELVQEA-DILTFHTPLFKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred ccc----CCH-------HHHHhhC-CEEEEeCCCCCCcccccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHH
Confidence 000 111 2333333 44433211111100112334556788888 4789999999999863 455555
Q ss_pred Hh
Q 023227 157 KE 158 (285)
Q Consensus 157 k~ 158 (285)
+.
T Consensus 222 ~~ 223 (378)
T PRK15438 222 NE 223 (378)
T ss_pred Hh
Confidence 54
No 378
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=50.50 E-value=1.3e+02 Score=26.20 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=37.1
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
.+.+.++||...+|-+..|--|..+...|+..|..++..... .+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asT---aeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAST---AEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEecc---HHHHHHHHhcCCc
Confidence 456778898766777788888888877777777655554433 3555556666664
No 379
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.46 E-value=1.5e+02 Score=31.12 Aligned_cols=56 Identities=18% Similarity=0.026 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHH-HHHcCCC----CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 7 SVKDRIGYSMISD-AEAKGLI----TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 7 S~K~R~a~~~~~~-a~~~g~~----~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
+..+|.+.-.+.+ +.+.+.. .+....|+.-.+|-.|.+.|...++.|++++||=..
T Consensus 402 pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 402 SVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4445555555443 3333321 111246888899999999999999999999999533
No 380
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=50.34 E-value=70 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.017 Sum_probs=16.7
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 34 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 34 v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+.+..-.+...+--.|..+|++.+++.+...++.-++.++..|.+
T Consensus 60 vv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 60 VVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp EE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred EEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 333333344444444444455555544444344444444444443
No 381
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=50.21 E-value=1.5e+02 Score=24.71 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=36.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|--|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 46888889999999999999999987666443211 122345566787776554
No 382
>PLN02591 tryptophan synthase
Probab=50.19 E-value=1.5e+02 Score=25.49 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH-----HHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEE
Q 023227 8 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG-----LAFMAAAKQYRLIITMPA--SMSLERRIILRAFGAELV 80 (285)
Q Consensus 8 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a-----~A~~a~~~G~~~~iv~p~--~~~~~~~~~~~~~Ga~v~ 80 (285)
++......++...+++ . . ..++..+--|.-.. ....|+..|++-+++.+- .....-...++.+|-+.+
T Consensus 61 ~~~~~~~~~~~~~r~~-~---~-~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 61 TTLDSVISMLKEVAPQ-L---S-CPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred CCHHHHHHHHHHHhcC-C---C-CCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence 3444555555554422 1 1 23567777775433 455688999999988543 223445677899998777
Q ss_pred EeC-CCCChHHHHHHHHHHHHhCCCeEec
Q 023227 81 LTD-PAKGMKGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 81 ~~~-~~~~~~~~~~~a~~~~~~~~~~~~~ 108 (285)
++= ++.. .++. ++.++..++..|+
T Consensus 136 ~lv~Ptt~-~~ri---~~ia~~~~gFIY~ 160 (250)
T PLN02591 136 LLTTPTTP-TERM---KAIAEASEGFVYL 160 (250)
T ss_pred EEeCCCCC-HHHH---HHHHHhCCCcEEE
Confidence 654 4322 3333 3333444455554
No 383
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.19 E-value=71 Score=26.75 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..||++.+|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57899999999999999999999998887654
No 384
>PRK05854 short chain dehydrogenase; Provisional
Probab=50.12 E-value=1.3e+02 Score=26.35 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=42.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHc--CCEEEE--eCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAF--GAELVL--TDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~--Ga~v~~--~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..|||+.++--|.++|..-.+.|.+++++.+..... ..+..++.. +.++.+ ++- .+.++..+.+.++.++.
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl-~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDL-SSLASVAALGEQLRAEG 91 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecC-CCHHHHHHHHHHHHHhC
Confidence 678888888899999998888998877765432111 112223322 345544 343 34455555566655554
No 385
>PRK07324 transaminase; Validated
Probab=50.09 E-value=1.4e+02 Score=27.10 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=31.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 4666667777766666543 332233444443334445667889999998874
No 386
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=49.94 E-value=49 Score=29.59 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=33.3
Q ss_pred EEEeeCCChHHHHHHHHHHHc----CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAK----QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~----G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
.|++..+=|++-|+|++|... |=..++|+|.+. .+.....|.++.+.+.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 577777777777777775432 323455666541 1221123567788888888874
No 387
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=49.90 E-value=1.3e+02 Score=24.98 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=35.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~-~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|-.|.+++......|.+++++........+ ...++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 57888999999999999988899987777554322212 222344566665544
No 388
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=49.87 E-value=1.9e+02 Score=25.84 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=35.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
+...+.++...+|. ..|..|.++...|+..|.+.++++.. +..+...++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 33556667666666 56889999999999999873444333 34555666777763
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=49.75 E-value=1.5e+02 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=26.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..+|++.+|..|.+++......|.+++++..
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 6788889999999999998888999777654
No 390
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=49.69 E-value=96 Score=27.52 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 83 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~----~~~~~Ga~v~~~~ 83 (285)
.|.++ |.+..+.+-..|.+++++.+++++|++++++.|+... ...++ ..+..|+++..++
T Consensus 142 ~g~l~-g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 142 FGDVS-KVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred hCCcC-CcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 45543 2233333333577899999999999999999998532 22222 2356788887666
No 391
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=49.65 E-value=1.1e+02 Score=27.47 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 023227 24 GLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 83 (285)
Q Consensus 24 g~~~~g~~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 83 (285)
|.++ | .+|+.... .|.+++++.+++++|++++++.|+.. +...+.. .+..|.++..+.
T Consensus 151 g~l~-g-~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-D-IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-C-cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5543 2 23444433 58999999999999999999999843 2233322 346788887665
No 392
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=49.41 E-value=1.6e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+.++|--|.++|......|.+++++-+.
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 67899999999999999999999987776443
No 393
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=49.40 E-value=92 Score=29.65 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=56.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe---cCCCC-HH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PASMS-LE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~---p~~~~-~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
+.+++.-. ++.|.++.+|++..-++ ++..+ .. -++.++..+..++++++.. ....+.++.++++.
T Consensus 372 r~vvt~H~-----af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~--~~~~~~l~~IA~e~ 444 (479)
T TIGR03772 372 RHLITTHD-----AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPNL--AARSTTLNEIADEL 444 (479)
T ss_pred CEEEEECC-----cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--CCchHHHHHHHHHc
Confidence 45665544 68999999999988765 23222 22 3667789999999999742 22344566677776
Q ss_pred CCeEecCCCCCCCch-HhHHhchHHHHHhhh
Q 023227 103 PNAYMLQQFENPANP-KIHYETTGPELWKGS 132 (285)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~g~~t~~~EI~~q~ 132 (285)
+-... .-+.++... ...|..++.+.++++
T Consensus 445 Gv~V~-~l~~d~l~~~~~tY~~~M~~N~~~L 474 (479)
T TIGR03772 445 GVRVC-AIYGDTFDDDVTNYVDLMRFNADSL 474 (479)
T ss_pred CCcEE-eeecCCCCCccccHHHHHHHHHHHH
Confidence 32221 112122211 235777777776665
No 394
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.37 E-value=1.6e+02 Score=24.84 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=41.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+.++|--|.++|......|.+++++-... ....+..+..+.++..+..+ .+.++..+...+..++.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 678888888899999999999999876664332 11122234456665554322 23333334444444443
No 395
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=49.32 E-value=1.6e+02 Score=24.79 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=41.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|--|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+ .+.++..+...+..++.
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 67889988889999999999999987665432 2333333 3345444443321 23334444444544443
No 396
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=49.25 E-value=1.2e+02 Score=27.10 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=31.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 85 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 85 (285)
.|+..+++..+..++..+- +.-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4666666666666555442 2222344455433344556678899999988753
No 397
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=49.10 E-value=1.5e+02 Score=25.31 Aligned_cols=52 Identities=35% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
..+.++...+|...+|..|.+++..++..|.+++++.+ +..+...++.+|++
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGAD 186 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCC
Confidence 34566656677777788999999999999888544433 23445555666654
No 398
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=48.98 E-value=1.7e+02 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=35.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.++..++|..+..++..+-.++-.-.|++|..+-......++..|+++++++-
T Consensus 50 ~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 50 HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 45666777776666665432222246777776666667788889999999874
No 399
>PRK09072 short chain dehydrogenase; Provisional
Probab=48.95 E-value=1.3e+02 Score=25.29 Aligned_cols=32 Identities=34% Similarity=0.357 Sum_probs=27.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|++++|-.|.+++......|.+++++...
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 67888988999999999999999987776543
No 400
>PRK08960 hypothetical protein; Provisional
Probab=48.94 E-value=2.1e+02 Score=25.95 Aligned_cols=53 Identities=13% Similarity=-0.012 Sum_probs=32.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++..+..++..+- +.-.-.|+++.-.-+.....++.+|++++.++-
T Consensus 93 ~~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~ 145 (387)
T PRK08960 93 ERILVTPGGSGALLLASSLL-VDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPV 145 (387)
T ss_pred hhEEEccCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCeEEEEec
Confidence 35777777788877766543 222234455543334445667788999987753
No 401
>PRK12414 putative aminotransferase; Provisional
Probab=48.90 E-value=2.1e+02 Score=25.96 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=29.5
Q ss_pred EEEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~-~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+..++|..+..++..+- .-|=+ |+++.-.-..-...++..|++++.++.
T Consensus 92 ~i~it~g~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 92 EVTVIASASEGLYAAISALVHPGDE--VIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred cEEEECChHHHHHHHHHHhcCCCCE--EEEeCCCccchHHHHHHcCCEEEEEec
Confidence 4666677777766665442 22333 444432223345556778999988874
No 402
>PRK05872 short chain dehydrogenase; Provisional
Probab=48.84 E-value=1.6e+02 Score=25.56 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=41.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHc--CCEEEE--eCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAF--GAELVL--TDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~--Ga~v~~--~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. ++- .+.++..+...+..++.
T Consensus 11 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 11 VVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVERF 83 (296)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999986665432 2233222 333 345554 443 23334444445554443
No 403
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=48.78 E-value=1.5e+02 Score=24.51 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=36.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~ 83 (285)
..||+..+|.-|.+++......|.+++++...+... .....++..|.++..+.
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQ 57 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEE
Confidence 468889999999999999989999887655443221 22334556676665544
No 404
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=48.70 E-value=84 Score=27.53 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=40.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe---cCCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
+.+++.-. ++.|.++.+|++.+-+. |+.. ++. -++.++..+..++++++... .+.++.++++.
T Consensus 178 ~~~v~~H~-----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~----~~~~~~ia~~~ 248 (287)
T cd01137 178 RKLVTSEG-----AFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVN----DRLMKQVAKET 248 (287)
T ss_pred CEEEEecc-----cHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCC----hHHHHHHHHHh
Confidence 34555543 67889999999988654 2322 232 35567899999999986432 23445666665
No 405
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=48.62 E-value=1.4e+02 Score=25.26 Aligned_cols=51 Identities=25% Similarity=0.227 Sum_probs=35.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcC
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 76 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~-~~iv~p~~~~~~~~~~~~~~G 76 (285)
....+.++...+|. ..|..|.++...|+.+|.+ ++++ . .++.+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~-~--~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV-D--PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE-C--CCHHHHHHHHHcC
Confidence 34566777555555 5688999999999999988 4333 2 2455666777777
No 406
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.58 E-value=1.5e+02 Score=24.35 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=35.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~~~~~~Ga~v~~~~~ 84 (285)
..||+..+|.-|..+|......|.++++++..+... .....++..+.++.++..
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 678888999999999998888899877763433221 122334445666655543
No 407
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=48.28 E-value=1.8e+02 Score=24.97 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHHHHHhCCCeEecCCCCCCCchH
Q 023227 41 TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM--KGAVQKAEEILAKTPNAYMLQQFENPANPK 118 (285)
Q Consensus 41 ~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (285)
.+..+|.+.+..|.++.++ ..+.........+.++.+-..+...... ....+......... ....++...+...+.
T Consensus 19 ~a~~la~~l~~~g~~vl~i-D~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r~fD~Lve~i~~~~-~dvIIDngAs~~~~l 96 (241)
T PRK13886 19 IAATIAQYKASKGQKPLCI-DTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASTE-GDVIIDNGASSFVPL 96 (241)
T ss_pred HHHHHHHHHHhCCCCEEEE-ECCCCCchhhhHHhcCCcceecccCCccchhhHHHHHHHHhccC-CCEEEECCCcchHHH
Confidence 4566677788889987665 3332223344456666554444321111 11222333333232 334443332222234
Q ss_pred hHH--hchHHHHHhhhCCCCCEEEE-ccCCc----ccHHHHHHHHHhhCCCcEEEEE
Q 023227 119 IHY--ETTGPELWKGSGGRIDALVS-GIGTG----GTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 119 ~g~--~t~~~EI~~q~~~~~d~iv~-~vG~G----g~~aGi~~~~k~~~~~~~vigv 168 (285)
..| .....|++++++ .+.|+. ++-+| -|+.|+..-+.....+++++.+
T Consensus 97 ~~yl~~n~l~~ll~e~g--~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vvw 151 (241)
T PRK13886 97 SHYLISNQVPALLQDMG--HELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVVW 151 (241)
T ss_pred HHHHHhCcHHHHHHHCC--ceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEEE
Confidence 444 555568888874 454444 34344 4677776555554445666664
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.24 E-value=80 Score=29.26 Aligned_cols=51 Identities=10% Similarity=-0.135 Sum_probs=24.2
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCCC--hHHHHHHHHHHHcCCeEE
Q 023227 3 EPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSG--NTGIGLAFMAAAKQYRLI 57 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssG--N~g~a~A~~a~~~G~~~~ 57 (285)
+|+|+=|--.+..+...+.++|. ...++++-.- ...-.+..++...|+++.
T Consensus 213 GptGvGKTTt~akLA~~l~~~g~----~V~lItaDtyR~gAveQLk~yae~lgvpv~ 265 (407)
T PRK12726 213 GQTGVGKTTTLVKLGWQLLKQNR----TVGFITTDTFRSGAVEQFQGYADKLDVELI 265 (407)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCC----eEEEEeCCccCccHHHHHHHHhhcCCCCEE
Confidence 56666666665555555544443 1233333111 122245555666666554
No 409
>PRK07774 short chain dehydrogenase; Provisional
Probab=48.17 E-value=1.6e+02 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..||+.++|--|.+++......|.+++++-+.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999999999987776544
No 410
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=48.16 E-value=2.3e+02 Score=26.29 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=31.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+..+++..+..++..+-. +-.-.|++|.-.-..-.......|++++.++
T Consensus 118 ~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~ 169 (430)
T PLN00145 118 DDIYLTAGCAQAIEIIMSVLA-QPGANILLPRPGYPLYEARAVFSGLEVRHFD 169 (430)
T ss_pred hhEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEee
Confidence 347777777888777666532 2222455555333333445677899998876
No 411
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=48.04 E-value=1.5e+02 Score=24.74 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=42.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHh
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAK 101 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~ 101 (285)
..+|+..+|.-|.+++......|.+++++.+..... .-...++..|.++..+..+ .+.++..+...+..++
T Consensus 13 ~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678889999999999999889999877765432111 1123345567666544322 2233333444444443
No 412
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=48.00 E-value=1.7e+02 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
+.||+.++|.-|.++|......|.++++.-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4689999999999999999999998766543
No 413
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.99 E-value=1.4e+02 Score=25.85 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH-----HHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEE
Q 023227 8 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG-----LAFMAAAKQYRLIITMPA--SMSLERRIILRAFGAELV 80 (285)
Q Consensus 8 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a-----~A~~a~~~G~~~~iv~p~--~~~~~~~~~~~~~Ga~v~ 80 (285)
++.+....++...+++.. . ..++..+--|--.. ..-.|+..|++-+++.+- +....-+..++.+|-+.+
T Consensus 71 ~~~~~~~~~~~~~r~~~~---~-~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 71 VTLADVFELVREIREKDP---T-IPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred CCHHHHHHHHHHHHhcCC---C-CCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 445555666666553322 1 24567777775333 566688899999998422 112234667789998777
Q ss_pred E-eCCCCChHHHHHHHHHHHHhCCCeEec
Q 023227 81 L-TDPAKGMKGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 81 ~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 108 (285)
. +.+... .++. +.+++..+++.|+
T Consensus 147 ~lvap~t~-~eri---~~i~~~s~gfIY~ 171 (258)
T PRK13111 147 FLVAPTTT-DERL---KKIASHASGFVYY 171 (258)
T ss_pred EEeCCCCC-HHHH---HHHHHhCCCcEEE
Confidence 6 666432 2333 3344444565554
No 414
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=47.97 E-value=36 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCCCc
Q 023227 128 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV 175 (285)
Q Consensus 128 I~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~ 175 (285)
.+++.-...|.+++-...|...--++..++.+..++-|+.|+..+.-.
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 344444567989988889999999999999999999999999888753
No 415
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=47.96 E-value=2.1e+02 Score=26.07 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=69.2
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH
Q 023227 20 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL 99 (285)
Q Consensus 20 a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~ 99 (285)
+....+++|| ++++...-|--|.|.-..|+..|-.-+|-+..+ +.|+.+.+.+||+=.+.+.+ ..+..
T Consensus 177 v~nta~v~~G-~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~--~~Kl~~A~~fGAT~~vn~~~--~~~vv------- 244 (366)
T COG1062 177 VVNTAKVEPG-DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN--PEKLELAKKFGATHFVNPKE--VDDVV------- 244 (366)
T ss_pred hhhcccCCCC-CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCC--HHHHHHHHhcCCceeecchh--hhhHH-------
Confidence 4455667777 567777777788888888888888877776653 57777778888754443321 00111
Q ss_pred HhCCCeEecCCCCCCCchHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCCC
Q 023227 100 AKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 173 (285)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 173 (285)
|..+++. +-.|+.|=++|+-..+..-....+. +-..-++|+-+.+.
T Consensus 245 ---------------------------~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~ 291 (366)
T COG1062 245 ---------------------------EAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQ 291 (366)
T ss_pred ---------------------------HHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 1122221 1367778887777665554444443 55666777755444
No 416
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=47.96 E-value=1.2e+02 Score=27.45 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=41.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 111 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 111 (285)
.|+..+++.++..+...+- +.=.-.|+++.-.-..-...++.+|.+++.++.+.++.-..+..++...+....++++..
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 4666666666666554432 222223444443334456677899999998875322111112222222333356666444
Q ss_pred CCC
Q 023227 112 ENP 114 (285)
Q Consensus 112 ~~~ 114 (285)
.||
T Consensus 169 ~NP 171 (371)
T PRK05166 169 SNP 171 (371)
T ss_pred CCC
Confidence 444
No 417
>PRK08361 aspartate aminotransferase; Provisional
Probab=47.94 E-value=2.2e+02 Score=25.88 Aligned_cols=52 Identities=12% Similarity=-0.048 Sum_probs=31.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+..+++..+..++..+- +.-.-.|+++.-.-..-...++..|++++.++-
T Consensus 95 ~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 95 NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPL 146 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEec
Confidence 4666677777766655432 222234555553333445667789999988763
No 418
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=47.92 E-value=1.5e+02 Score=26.48 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023227 63 SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTP 103 (285)
Q Consensus 63 ~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 103 (285)
.+++.-...++.+|..|...++.++++-+.+.+..+.+++|
T Consensus 87 AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 87 AVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred cCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 44566677788888888888886666666666666655553
No 419
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.91 E-value=2.1e+02 Score=26.80 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH----HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEe
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII----LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 107 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~----~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 107 (285)
..+..+||-.+..++..+- ++=--.|++|...-...... ++.+|+++.+++...+.+ .. ++...+.....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l---~~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EI---VALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HH---HHhCCcCCeEEE
Confidence 4566888888888777653 33334666676554433333 688999999998532222 22 222223335667
Q ss_pred cCCCCCCC
Q 023227 108 LQQFENPA 115 (285)
Q Consensus 108 ~~~~~~~~ 115 (285)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 66666665
No 420
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=47.78 E-value=1.4e+02 Score=26.69 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=44.7
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEecCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 110 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 110 (285)
.|+..+++..+..++..+- +.-.-.|+++.-....-....+.+|++++.++-+.++.-..+..++.. .......++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4666677777766655432 222234555554455566778899999999875322211112222222 22345667654
Q ss_pred CCCCC
Q 023227 111 FENPA 115 (285)
Q Consensus 111 ~~~~~ 115 (285)
.+||.
T Consensus 162 p~NPt 166 (356)
T PRK04870 162 PNNPT 166 (356)
T ss_pred CCCCC
Confidence 45553
No 421
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=47.71 E-value=1.2e+02 Score=27.28 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 023227 22 AKGLITPGESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 83 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 83 (285)
+.|.++ | .+|+....+ |.+++++..++++|++++++.|+.. +...++. .+..|.++..++
T Consensus 149 ~~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345543 2 344444443 8999999999999999999999853 2233322 345788877766
No 422
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=47.62 E-value=1.6e+02 Score=26.05 Aligned_cols=52 Identities=23% Similarity=0.431 Sum_probs=35.1
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G-~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
...+.++...+|. .+|..|.+++..|+.+| .++++ +.. +..+...++.+|++
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~~--~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VDL--DDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-EcC--CHHHHHHHHHhCCC
Confidence 3445666566665 46899999999999999 55443 332 45667777778873
No 423
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.60 E-value=2e+02 Score=25.75 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=59.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++|..-.-|+-|+++|..++.+|++++++=+.. ... ....+|... . +.+ ++.++- +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 567777889999999999999999887664432 221 123445421 1 122 233333 4444332
Q ss_pred CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH
Q 023227 111 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 150 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a 150 (285)
..++ .-..-+..|.++.+ +++.+++-++.|+..-
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd 246 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVD 246 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcC
Confidence 2222 22334556788887 4789999999999864
No 424
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=47.32 E-value=2.3e+02 Score=25.93 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=43.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChH--HHHHHHHHHHHhCC-CeEecCCC-CCCCchHhHHhchHHHHH
Q 023227 54 YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK--GAVQKAEEILAKTP-NAYMLQQF-ENPANPKIHYETTGPELW 129 (285)
Q Consensus 54 ~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~EI~ 129 (285)
.|..|+.-++.-..--..++.+|-++.++.+...+. ...+...+..++.+ .....+.. .||.. -...-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHH
Confidence 355555555544444455666777777665422222 12333444444431 12222221 23322 1111233334
Q ss_pred hhhCCCCCEEEEccCCcccHHHHHHHH
Q 023227 130 KGSGGRIDALVSGIGTGGTITGAGKFL 156 (285)
Q Consensus 130 ~q~~~~~d~iv~~vG~Gg~~aGi~~~~ 156 (285)
++. .+|. |+++|+|+.+= +++++
T Consensus 83 ~~~--~~D~-IIaiGGGS~iD-~aK~i 105 (382)
T cd08187 83 KEE--KVDF-ILAVGGGSVID-SAKAI 105 (382)
T ss_pred HHc--CCCE-EEEeCChHHHH-HHHHH
Confidence 443 4676 67888776543 34443
No 425
>PTZ00377 alanine aminotransferase; Provisional
Probab=47.26 E-value=2.5e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=34.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++.++..++..+-..+=.-.|++|.-.-..-...++.+|++++.++-
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 457777777788777766542111223555554445566777899999988763
No 426
>PRK07985 oxidoreductase; Provisional
Probab=47.21 E-value=1.7e+02 Score=25.42 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=42.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CC-H-HHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS-L-ERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~-~-~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+..+|.-|.++|......|.+++++-... .. . .....++..|.+++.+..+ .+.++..+..++..++.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999999987653321 11 1 1122345567766554322 23333344444444443
No 427
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=47.20 E-value=1.6e+02 Score=30.85 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=28.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
.+.|+.-.+|-.|.++|+..++.|.++++|=.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 35788889999999999999999999999954
No 428
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.13 E-value=1.9e+02 Score=24.90 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=40.3
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAE-LVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..|||..+ +--|+++|......|.++++.-.......+++.+ +.+|.+ .+.++- .+.++..+..++..++.
T Consensus 7 ~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 7 KGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDV-SKPEHFKSLAESLKKDL 81 (274)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecC-CCHHHHHHHHHHHHHHc
Confidence 56777764 4588889988888999877664432112334433 344543 344443 23444444555555544
No 429
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=47.11 E-value=2.5e+02 Score=26.44 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=41.7
Q ss_pred CCCCCchhHHHHHHHHHHHHcC---CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCE
Q 023227 3 EPCSSVKDRIGYSMISDAEAKG---LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAE 78 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~g---~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~-~~Ga~ 78 (285)
.+.|....|.+....... ..| .+.+ +.|+..++++.+..+...+- ++-.-.|++|.-.-..-...++ ..|++
T Consensus 84 ~~~G~~~LR~aiA~~l~~-~~~~~~~v~~--~~Iiit~Ga~~al~~l~~~l-~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~ 159 (468)
T PLN02450 84 DYHGLPAFKNALAEFMSE-IRGNKVTFDP--NKLVLTAGATSANETLMFCL-AEPGDAFLLPTPYYPGFDRDLKWRTGVE 159 (468)
T ss_pred CCCChHHHHHHHHHHHHH-hhCCCCCcCh--HHeEEccChHHHHHHHHHHh-CCCCCEEEECCCCCCchHHHHhhcCCcE
Confidence 356777777764333321 112 1344 34777777777776665542 3323345554422222233444 58999
Q ss_pred EEEeCC
Q 023227 79 LVLTDP 84 (285)
Q Consensus 79 v~~~~~ 84 (285)
++.++-
T Consensus 160 ~v~v~~ 165 (468)
T PLN02450 160 IVPIHC 165 (468)
T ss_pred EEEEec
Confidence 998763
No 430
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=46.89 E-value=1.2e+02 Score=27.29 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=36.4
Q ss_pred EEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHH----HHHHcCCEEEEeC
Q 023227 32 VLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 83 (285)
Q Consensus 32 ~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~----~~~~~Ga~v~~~~ 83 (285)
+|..... -|.++++..+++++|++++++.|+... ...+. ..+..|+++...+
T Consensus 158 ~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 158 TLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444444 389999999999999999999998632 22232 2355688877665
No 431
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=46.88 E-value=2.1e+02 Score=26.31 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=72.2
Q ss_pred CCCCCchhHHHHHHHHHH----HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 3 EPCSSVKDRIGYSMISDA----EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a----~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
|-.|.+..-.|++.+... +..|..-. .++|..-..||-|..+|..++.+|++++++=|..... -+.
T Consensus 86 napg~na~aVAE~v~~~lL~l~r~~g~~l~-gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~--------~~~- 155 (381)
T PRK00257 86 SAPGCNARGVVDYVLGSLLTLAEREGVDLA-ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA--------EGD- 155 (381)
T ss_pred ECCCcChHHHHHHHHHHHHHHhcccCCCcC-cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc--------ccC-
Confidence 334556666666666443 23333222 3578778899999999999999999998885432100 010
Q ss_pred EEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH--HHHHHH
Q 023227 79 LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFL 156 (285)
Q Consensus 79 v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a--Gi~~~~ 156 (285)
+.++ + ..++.++- +...++--.++.....=+.-+..|.++++ +++.+++-++-|+.+- .+..++
T Consensus 156 ~~~~----~-------l~ell~~a-DiV~lh~Plt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 156 GDFV----S-------LERILEEC-DVISLHTPLTKEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred cccc----C-------HHHHHhhC-CEEEEeCcCCCCccccccccCCHHHHhcC--CCCeEEEECCCCcccCHHHHHHHH
Confidence 0000 1 12333333 33332211111100011334566788888 4789999999999864 344444
Q ss_pred H
Q 023227 157 K 157 (285)
Q Consensus 157 k 157 (285)
+
T Consensus 222 ~ 222 (381)
T PRK00257 222 L 222 (381)
T ss_pred H
Confidence 4
No 432
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=46.70 E-value=70 Score=29.02 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHcCCEE--EEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCC-CchHhHHhchHHHHHhhhCCCCCEE
Q 023227 63 SMSLERRIILRAFGAEL--VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENP-ANPKIHYETTGPELWKGSGGRIDAL 139 (285)
Q Consensus 63 ~~~~~~~~~~~~~Ga~v--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~g~~t~~~EI~~q~~~~~d~i 139 (285)
....+.-..+|.+|++= +.++..-.--...+.+++..++. + ..+.-|++. .+|..|--+-+.|+.+. ..+|.
T Consensus 56 gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~-~-I~~~vyD~v~~ePtv~s~~~alefak~--~~fDs- 130 (465)
T KOG3857|consen 56 GVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEEN-G-INVEVYDKVQPEPTVGSVTAALEFAKK--KNFDS- 130 (465)
T ss_pred hhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHc-C-CceEEecCccCCCchhhHHHHHHHHHh--cccce-
Confidence 33455667788899843 33343111113456666666665 3 222233332 22355667778888765 34664
Q ss_pred EEccCCcccH
Q 023227 140 VSGIGTGGTI 149 (285)
Q Consensus 140 v~~vG~Gg~~ 149 (285)
|+++|+|+..
T Consensus 131 ~vaiGGGSa~ 140 (465)
T KOG3857|consen 131 FVAIGGGSAH 140 (465)
T ss_pred EEEEcCcchh
Confidence 6788887754
No 433
>PRK07775 short chain dehydrogenase; Provisional
Probab=46.51 E-value=1.9e+02 Score=24.71 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v~~~~ 83 (285)
..+|++.+|--|.+++......|.+++++....... .-...++..|.++..+.
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFP 65 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 578888889999999999888999877665432111 11233556677776654
No 434
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=46.44 E-value=63 Score=30.03 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=54.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++|+....|+-|+.+|..++.+|.+++++ ..+ +.+....+..|.++. + .++ ..+.. +.+ +.-
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~d--p~r~~~A~~~G~~v~--~----lee-------al~~a-DVV-Ita 257 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVT-EVD--PIRALEAAMDGFRVM--T----MEE-------AAKIG-DIF-ITA 257 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEE-eCC--hhhHHHHHhcCCEeC--C----HHH-------HHhcC-CEE-EEC
Confidence 57899999999999999999999986554 322 234445566787553 1 111 11221 332 221
Q ss_pred CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCccc
Q 023227 111 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 148 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~ 148 (285)
-. ....+..|.++++ ++..+++-+|.+..
T Consensus 258 TG-------~~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 258 TG-------NKDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred CC-------CHHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 11 1223344566766 35778888888765
No 435
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=46.22 E-value=1.2e+02 Score=26.57 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
.++.-.+|-.++|++++....|++-+.++.++
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44445555578998888888888766665554
No 436
>PRK07576 short chain dehydrogenase; Provisional
Probab=46.22 E-value=1.8e+02 Score=24.60 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=35.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|.-|.+++......|.+++++-..... ......+...+.+++.+.
T Consensus 11 ~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 11 NVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 67888888999999999988899987766543211 112234455566665443
No 437
>PRK07069 short chain dehydrogenase; Validated
Probab=46.22 E-value=1.7e+02 Score=24.22 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
.+|+..+|.-|.++|..-.+.|.+++++.+.
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888889999999888889887766544
No 438
>PRK10490 sensor protein KdpD; Provisional
Probab=46.21 E-value=2.1e+02 Score=29.56 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=59.7
Q ss_pred EEEeeCCChHH----HHHHHHHHHcCCeEEEEecCC-----CCH-------HHHHHHHHcCCEEEEeCCCCChHHHHHHH
Q 023227 32 VLIEPTSGNTG----IGLAFMAAAKQYRLIITMPAS-----MSL-------ERRIILRAFGAELVLTDPAKGMKGAVQKA 95 (285)
Q Consensus 32 ~vv~~ssGN~g----~a~A~~a~~~G~~~~iv~p~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a 95 (285)
.+|+-+++-++ +..+-.|.+++-+.+++.-++ .+. ..++..+.+||+++.+.+. + ..+..
T Consensus 253 iLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-d---va~~i 328 (895)
T PRK10490 253 ILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-A---EEKAV 328 (895)
T ss_pred EEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-C---HHHHH
Confidence 45555555444 445566777888877543221 111 2345668899999888763 2 22333
Q ss_pred HHHHHhCCC-eEecCCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccC
Q 023227 96 EEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 144 (285)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG 144 (285)
.+++++.+- ...+.+...+. +...+++...+++.. +.+|..++|..
T Consensus 329 ~~~A~~~~vt~IViG~s~~~~--~~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 329 LRYAREHNLGKIIIGRRASRR--WWRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHhCCCEEEECCCCCCC--CccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 455555522 24444432221 122357788888887 56887777644
No 439
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.20 E-value=1.8e+02 Score=24.41 Aligned_cols=41 Identities=15% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC--CcEEEEEe
Q 023227 126 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGIE 169 (285)
Q Consensus 126 ~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigv~ 169 (285)
.+++++- +.||.||+. +...+.|+..++++.+- ++.|+|.+
T Consensus 175 ~~~l~~~-~~~~~i~~~--~d~~a~g~~~~l~~~g~~~di~vig~d 217 (273)
T cd06310 175 EDLLTAN-PDLKGIFGA--NEGSAVGAARAVRQAGKAGKVKVVGFD 217 (273)
T ss_pred HHHHHhC-CCceEEEec--CchhHHHHHHHHHhcCCCCCeEEEEeC
Confidence 3444442 357887776 45566788888887653 56777765
No 440
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=46.10 E-value=1.7e+02 Score=24.77 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=35.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 77 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga 77 (285)
+.+.++...+|...+|..|.+++..++..|.+++++.+.. +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4466665666666678999999999999999876665432 4555566775
No 441
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=45.97 E-value=1.3e+02 Score=22.86 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=32.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe-cCCCCHHH----HHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLER----RIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~-p~~~~~~~----~~~~~~~Ga~v~~~~ 83 (285)
..+|+..+|..|.+++......|...++++ +...+... ++.++..|.++..+.
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVA 59 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEE
Confidence 357888888899999999888887544444 32222111 244455566655443
No 442
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=45.95 E-value=2.3e+02 Score=25.73 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=31.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+..+++..+..++..+-... .-.|+++.-.-..-...++.+|++++.++
T Consensus 96 ~~i~~t~G~~~al~~~~~~l~~~-gd~v~i~~P~y~~~~~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 96 DDVVLCSGCSHAIEMCIAALANA-GQNILVPRPGFPLYETLAESMGIEVKLYN 147 (401)
T ss_pred HHEEECcChHHHHHHHHHHhCCC-CCEEEEeCCCChhHHHHHHHcCCEEEEee
Confidence 34666777777776665543221 12344454334445667789999998875
No 443
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=45.94 E-value=1.8e+02 Score=27.47 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=54.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCCh-HHHHHHHHHHHHhCCCeEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYMLQ 109 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 109 (285)
+.|..-.+|-.|.+.|+--++.|..+++|=... ..|+.+..--+.... .+..++..++.++.+--+.++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~----------~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA----------LDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC----------CCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 567888999999999999999999999983221 134444333221111 134444455555543233332
Q ss_pred CCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCc
Q 023227 110 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 146 (285)
Q Consensus 110 ~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~G 146 (285)
. ..|..-...|+.++ +|++|.++|++
T Consensus 194 ~-------~vG~~it~~~L~~e----~Dav~l~~G~~ 219 (457)
T COG0493 194 V-------RVGRDITLEELLKE----YDAVFLATGAG 219 (457)
T ss_pred c-------eECCcCCHHHHHHh----hCEEEEecccc
Confidence 1 22333333344443 47888887764
No 444
>PRK08339 short chain dehydrogenase; Provisional
Probab=45.92 E-value=1.6e+02 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 61 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p 61 (285)
..|||.++|--|.++|......|.+++++-.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 6789998888999999999999998776644
No 445
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=45.86 E-value=33 Score=26.54 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
|+...+|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4668899999999999999999999998763
No 446
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=45.75 E-value=2.5e+02 Score=26.93 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=59.1
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC---C-hHHHHHHHH
Q 023227 21 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK---G-MKGAVQKAE 96 (285)
Q Consensus 21 ~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~---~-~~~~~~~a~ 96 (285)
+..| +++|++.-+.+.-..+=.-..++|++.|+-.+-+=|.-.+.+...-++..|+.+.+.++.. . ++-..+.+-
T Consensus 95 l~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icP 173 (596)
T KOG1177|consen 95 LSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICP 173 (596)
T ss_pred Hhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhH
Confidence 3444 4667666666776777788899999999988888787777788888999999999998632 2 223455555
Q ss_pred HHHHhCCC
Q 023227 97 EILAKTPN 104 (285)
Q Consensus 97 ~~~~~~~~ 104 (285)
|+.+..++
T Consensus 174 Ev~~~~~G 181 (596)
T KOG1177|consen 174 EVMRGDPG 181 (596)
T ss_pred HhhcCCCc
Confidence 55544443
No 447
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=45.67 E-value=1.9e+02 Score=24.49 Aligned_cols=71 Identities=17% Similarity=-0.014 Sum_probs=40.6
Q ss_pred eEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecC-C--CCHHHHHHHHHcCCEEE--EeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPA-S--MSLERRIILRAFGAELV--LTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~-~--~~~~~~~~~~~~Ga~v~--~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..+||.++ +--|.++|......|.++++.... . .....++.++..+.+++ .++- .+.++..+..++..++.
T Consensus 8 ~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~v~~~~~~~~~~~ 85 (258)
T PRK07370 8 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDV-QDDAQIEETFETIKQKW 85 (258)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCc-CCHHHHHHHHHHHHHHc
Confidence 56788754 568899998888999998765422 1 12334555555444433 3333 23344444455554543
No 448
>PRK07060 short chain dehydrogenase; Provisional
Probab=45.56 E-value=1.2e+02 Score=25.03 Aligned_cols=51 Identities=22% Similarity=0.146 Sum_probs=36.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~-~~~~Ga~v~~~~~ 84 (285)
..+|++.+|.-|..++......|.+++++.+. ..+... .+..+.+++.++-
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 67888888999999999999999986665443 223332 2445677776664
No 449
>PLN02583 cinnamoyl-CoA reductase
Probab=45.43 E-value=1.2e+02 Score=26.43 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+||+.+|--|..++......|.+++++.+.
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 67899999999999999999999999888764
No 450
>PRK06180 short chain dehydrogenase; Provisional
Probab=45.42 E-value=1.7e+02 Score=24.91 Aligned_cols=32 Identities=31% Similarity=0.243 Sum_probs=27.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+..+|--|.+++......|.+++++...
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 67899999999999999998999997776543
No 451
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.30 E-value=1.7e+02 Score=23.96 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=37.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH--HHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--RRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~--~~~~~~~~Ga~v~~~~ 83 (285)
+.||++.+|..|.+++......|.+++++.+...... ....++..+.++..+.
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 6789999999999999999999999877665543221 2233445566665554
No 452
>PLN02623 pyruvate kinase
Probab=45.26 E-value=3.1e+02 Score=26.89 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCeEEEEe---------cC--CCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCe-E
Q 023227 43 IGLAFMAAAKQYRLIITM---------PA--SMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPNA-Y 106 (285)
Q Consensus 43 ~a~A~~a~~~G~~~~iv~---------p~--~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~-~ 106 (285)
.-+...|+..|.++.+.. |. .+.-..+......|++.+....+. .| .++.+...+.+.+-... .
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 445667999999998643 22 222346777788999999887532 22 24444444443322111 1
Q ss_pred e---c---CCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEEecCC
Q 023227 107 M---L---QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 172 (285)
Q Consensus 107 ~---~---~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 172 (285)
+ . ....+ .....-....+.++.+.++ .. ||+..=+|.|+--++++ .|...|+++.+..
T Consensus 446 ~~~~~~~~~~~~~-~~~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~lSr~----RP~~pI~avT~~~ 509 (581)
T PLN02623 446 EGTTPPNLGQAFK-NHMSEMFAFHATMMANTLG--TS-IIVFTRTGFMAILLSHY----RPSGTIFAFTNEK 509 (581)
T ss_pred cchhhhhhccccC-CChHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHHHhh----CCCCCEEEECCCH
Confidence 1 0 01111 1112234445567777774 34 99998899877665544 5889999997543
No 453
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=45.26 E-value=2.2e+02 Score=25.18 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 28 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 28 ~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
++.. |+...+|..|.+++..|+.+|.+.++++.. +..+...++.+|++
T Consensus 175 ~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 222 (350)
T cd08240 175 ADEP-VVIIGAGGLGLMALALLKALGPANIIVVDI--DEAKLEAAKAAGAD 222 (350)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 4434 444467889999999999999865555432 35667777777764
No 454
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=45.24 E-value=1.4e+02 Score=25.77 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred HHHHHHHH-HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC---CCCCCCc
Q 023227 42 GIGLAFMA-AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ---QFENPAN 116 (285)
Q Consensus 42 g~a~A~~a-~~~G~~~~iv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 116 (285)
|+++-+++ +.+|-+...-++.. --..-++.+..-|-.|.+.++.. ....+.+.++.+++|+.-++. .|.++..
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e 149 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE 149 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecCCCCChhh
Confidence 45666777 55676665333331 11223334444466788888632 345566677778877544432 2222221
Q ss_pred hHhHHhchHHHHHhhhC-CCCCEEEEccCCcccHHHHHHHHHhhCCCcEEEEE
Q 023227 117 PKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 168 (285)
Q Consensus 117 ~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigv 168 (285)
- . .|.+.+. .+||.++|..|.-.==-=|..... ..+..-.+||
T Consensus 150 ---~-~----~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~-~~~~~v~igV 193 (253)
T COG1922 150 ---E-E----AIVERIAASGPDILLVGMGVPRQEIWIARNRQ-QLPVAVAIGV 193 (253)
T ss_pred ---H-H----HHHHHHHhcCCCEEEEeCCCchhHHHHHHhHH-hcCCceEEec
Confidence 1 1 3444442 459999999988653332333332 2344445555
No 455
>PRK08251 short chain dehydrogenase; Provisional
Probab=45.08 E-value=1.8e+02 Score=24.12 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=26.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|++++|.-|.++|..-.+.|.++++..+.
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999999999999988889877666443
No 456
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=45.08 E-value=2.5e+02 Score=25.77 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=31.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++..+..++..+-. +-.-.|+++.-.-..-...++.+|++++.++.
T Consensus 105 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 346666777777766665432 21223444443333446667889999988764
No 457
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=44.99 E-value=72 Score=29.12 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=37.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 85 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 85 (285)
+.++..++|..+..++..+-..+=.-.|++|..+.......+...|+++++++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577777777766655544322223457777766677777788899999998753
No 458
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=44.97 E-value=1.7e+02 Score=26.56 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=37.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEE
Q 023227 22 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF-GAEL 79 (285)
Q Consensus 22 ~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~-Ga~v 79 (285)
+.+.+.++...+|. .+|-.|.+++..|+..|...++++..+ +.+++.++.+ |+++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~~--~~~~~~~~~~~~~~v 233 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDRV--PERLEMARSHLGAET 233 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCcEE
Confidence 44556677555555 568789999999999998644554333 5677777777 5543
No 459
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=44.89 E-value=3e+02 Score=26.67 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=49.8
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 26 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 26 ~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+++|+...+.+.-.-+-..++.+|-..|....-+=|..++.+....++...+++++++.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 55665555556667788889999999999999988888888899999999999999997
No 460
>PRK06197 short chain dehydrogenase; Provisional
Probab=44.88 E-value=1.8e+02 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..||++++|--|.++|..-...|.+++++.+.
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888888889999999888889987776554
No 461
>PRK08068 transaminase; Reviewed
Probab=44.78 E-value=2.4e+02 Score=25.53 Aligned_cols=77 Identities=9% Similarity=-0.083 Sum_probs=41.4
Q ss_pred CCCchhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 5 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 5 tGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
.|.-..|.+....... +.|. +.+. ..|+..+++..+..++..+ .++-.-.|++|.-.-..-...++..|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 4555556543322211 2242 3442 1466666676776665333 333334456665444444556788999998887
Q ss_pred C
Q 023227 84 P 84 (285)
Q Consensus 84 ~ 84 (285)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 4
No 462
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=44.74 E-value=1.4e+02 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=34.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.|+..+++..+..++..+-.-| + .|+++.-.-..-...++.+|++++.++.
T Consensus 75 ~~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 75 EWILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hhEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 35777777778877665542223 3 4555554455667778899999998864
No 463
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=44.45 E-value=2.1e+02 Score=24.83 Aligned_cols=54 Identities=28% Similarity=0.376 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
.+.+.++...++. .+|..|.+++..|+..|.+++++.+ ++.+.+.++.+|++-+
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~ 213 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEV 213 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEE
Confidence 4456676566664 5678899999999999988544422 3456667777777443
No 464
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.40 E-value=1.1e+02 Score=28.92 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=38.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 81 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~---------~---------~~~~~~~~~~Ga~v~~ 81 (285)
+.|+.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688899999999999999999999888743321 1 1245667788887754
No 465
>PRK07063 short chain dehydrogenase; Provisional
Probab=44.35 E-value=1.9e+02 Score=24.23 Aligned_cols=72 Identities=8% Similarity=0.025 Sum_probs=41.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHH--cCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRA--FGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~--~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..||+.++|--|.++|..-...|.+++++-..... ......++. .+.++..+..+ .+.++..+...+..++.
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 67888888889999999988999987766443211 111223333 45555544321 23333444444444443
No 466
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=44.16 E-value=1.2e+02 Score=28.63 Aligned_cols=76 Identities=18% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHH-HHcCC---C---CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------
Q 023227 6 SSVKDRIGYSMISDA-EAKGL---I---TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-------------- 64 (285)
Q Consensus 6 GS~K~R~a~~~~~~a-~~~g~---~---~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~-------------- 64 (285)
++..+|.+.-.+.+. .+.+. . .+....|+.-.+|-.|.+.|..+++.|.++++|-....
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~ 191 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKL 191 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccC
Confidence 456666666555543 23221 1 11124688888899999999999999999998854321
Q ss_pred C----HHHHHHHHHcCCEEEE
Q 023227 65 S----LERRIILRAFGAELVL 81 (285)
Q Consensus 65 ~----~~~~~~~~~~Ga~v~~ 81 (285)
+ ...++.++.+|.+++.
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEe
Confidence 1 1235667888988764
No 467
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=44.15 E-value=2.4e+02 Score=25.27 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=34.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~ 83 (285)
+.|+..+++..+..++..+-.++-.-.|+++.-.-..-....+.+|++++.++
T Consensus 87 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~ 139 (364)
T PRK07865 87 AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD 139 (364)
T ss_pred ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecC
Confidence 35777778788877654443233334566666444455666788999999886
No 468
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.05 E-value=2e+02 Score=24.35 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHhhhCCCCCEEEEccCCcccHHHHHHHHHhhCC-CcEEEEEe
Q 023227 125 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLYGIE 169 (285)
Q Consensus 125 ~~EI~~q~~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~-~~~vigv~ 169 (285)
..+++++- ..||.||+. +..++.|+..++++.+. ++.|+|.+
T Consensus 174 ~~~~l~~~-~~~~ai~~~--nd~~a~g~~~al~~~g~~di~vvgfd 216 (272)
T cd06313 174 WETWLTKY-PQLDGAFCH--NDSMALAAYQIMKAAGRTKIVIGGVD 216 (272)
T ss_pred HHHHHHhC-CCCCEEEEC--CCcHHHHHHHHHHHcCCCceEEEeec
Confidence 33444432 458888886 44566788899988664 66777764
No 469
>PLN02477 glutamate dehydrogenase
Probab=44.00 E-value=1.2e+02 Score=28.34 Aligned_cols=53 Identities=13% Similarity=-0.031 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 10 DRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 10 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
-||..+.+..+.+.-..++...+|+...-||-|..+|......|.+++.+...
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 47777777776654222434467888889999999999999999888877553
No 470
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=43.99 E-value=1.9e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=23.3
Q ss_pred CCCCEEEEccCCcccHHHHHHHHHhhCC--CcEEEEEe
Q 023227 134 GRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGIE 169 (285)
Q Consensus 134 ~~~d~iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigv~ 169 (285)
+++|.|++. +...+.|+..++++.+. ++.|+|.+
T Consensus 181 ~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d 216 (275)
T cd06320 181 PDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTD 216 (275)
T ss_pred CCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecC
Confidence 457777666 45566788888888753 56677664
No 471
>PLN02368 alanine transaminase
Probab=43.86 E-value=2.7e+02 Score=25.77 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=41.7
Q ss_pred CCCCchhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 4 PCSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAA--KQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 4 ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~g~a~A~~a~~--~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
+.|....|.+..-... .+.|. +++ +.|+..+++..+..++..+-. -|=.+.+..|.- ..-...++..|++++
T Consensus 106 ~~G~~~LR~aia~~~~-~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y--~~y~~~~~~~g~~~v 180 (407)
T PLN02368 106 SRGLPGVRKEVAEFIE-RRDGYPSDP--ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQY--PLYSATISLLGGTLV 180 (407)
T ss_pred CCCCHHHHHHHHHHHH-HhcCCCCCh--hhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCC--ccHHHHHHHcCCEEE
Confidence 3455566665332221 12243 344 346666666677766665443 244444444443 344566788999998
Q ss_pred EeCC
Q 023227 81 LTDP 84 (285)
Q Consensus 81 ~~~~ 84 (285)
.++-
T Consensus 181 ~v~~ 184 (407)
T PLN02368 181 PYYL 184 (407)
T ss_pred EEec
Confidence 8753
No 472
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.82 E-value=3.2e+02 Score=27.53 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=0.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE-eCCCCChHHHHHHHHHHHHhCCCeEec
Q 023227 30 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYML 108 (285)
Q Consensus 30 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 108 (285)
.+.|+.-.+|-.|.+.|..+++.|++++||=.... .|..+.. ++...--.+....-.+..++.+-.+..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~----------~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~ 500 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE----------IGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFET 500 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC----------CCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_pred CCCCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCc
Q 023227 109 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 146 (285)
Q Consensus 109 ~~~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~G 146 (285)
+. ..+......++.++- +|+||+++|+.
T Consensus 501 ~~-------~v~~~v~~~~l~~~~---ydavvlAtGa~ 528 (752)
T PRK12778 501 DV-------IVGKTITIEELEEEG---FKGIFIASGAG 528 (752)
T ss_pred CC-------EECCcCCHHHHhhcC---CCEEEEeCCCC
No 473
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=43.74 E-value=98 Score=28.65 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 023227 39 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 83 (285)
Q Consensus 39 GN~g~a~A~~a~~~G~~~~iv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 83 (285)
.|.+++++.+++++|++++++-|+.- .+..++. .+..|+.+...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37889999999999999999999853 3443333 466788887665
No 474
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=43.70 E-value=1.1e+02 Score=28.75 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=39.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEEe
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLT 82 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~-----~~~~~~~~~~~~Ga~v~~~ 82 (285)
+.|+.-.+||.|.-+|..+..+|. +++++.+.. .....++.++..|.+++.-
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 467778899999999999999998 778776532 1344466777888887654
No 475
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=43.53 E-value=49 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
|..-.+|..|+++|..+...|++++++-+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 445577999999999999999999999664
No 476
>PRK09275 aspartate aminotransferase; Provisional
Probab=43.51 E-value=3.1e+02 Score=26.48 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCCCCchhHHHHHHHHHHHHc-CCCCC-CCeEEEeeCCChHHHHHHHHH----HHcCCeEEEEecCCCCHHHHHHHHH--
Q 023227 3 EPCSSVKDRIGYSMISDAEAK-GLITP-GESVLIEPTSGNTGIGLAFMA----AAKQYRLIITMPASMSLERRIILRA-- 74 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~-g~~~~-g~~~vv~~ssGN~g~a~A~~a----~~~G~~~~iv~p~~~~~~~~~~~~~-- 74 (285)
.|.|--..|-+...-....+. +...+ +.+.|+...++..+..++..+ ..+.=--.|++|.-.-..-....+.
T Consensus 132 ~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g 211 (527)
T PRK09275 132 VPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPR 211 (527)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcC
Confidence 466766777764432212221 22222 123577778888888877765 2333223344444333333444444
Q ss_pred cCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEecCCCCCCC
Q 023227 75 FGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPA 115 (285)
Q Consensus 75 ~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 115 (285)
+|.+++.++. ..+|+-..+..+++.......+++..-+||.
T Consensus 212 ~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPT 254 (527)
T PRK09275 212 YDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPP 254 (527)
T ss_pred CCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCc
Confidence 4566666642 2223322233333333333566665334553
No 477
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.39 E-value=1.9e+02 Score=23.95 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..||+.++|.-|.++|..-...|.++++....
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 67899999999999999988899988775544
No 478
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.36 E-value=2e+02 Score=24.28 Aligned_cols=71 Identities=20% Similarity=0.138 Sum_probs=38.1
Q ss_pred eEEEeeCCCh--HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEE-EEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGN--TGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAEL-VLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN--~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~-~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..|||..+++ -|.++|...++.|.++++.-........++.+. .+|... +.++- .+.++..+..++..++.
T Consensus 10 ~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv-~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 10 KGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDV-TNPKSISNLFDDIKEKW 84 (260)
T ss_pred EEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccC-CCHHHHHHHHHHHHHHc
Confidence 5678877764 677888777888998766533211122344443 335443 23443 23344444445554544
No 479
>PRK06207 aspartate aminotransferase; Provisional
Probab=43.36 E-value=2.6e+02 Score=25.57 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=31.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 32 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 32 ~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
.|+..+++..+..++..+- +.-.-.|+++.-.-..-...++.+|++++.++-
T Consensus 104 ~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 104 ELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred CEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHHcCCEEEEEec
Confidence 4666777777776665542 222223444443344556778899999987763
No 480
>PRK07201 short chain dehydrogenase; Provisional
Probab=43.29 E-value=1.6e+02 Score=28.92 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=44.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 102 (285)
..+|++.+|.-|.++|..-...|.+++++...... ......++..|.++..+..+ .+.++..+...+..++.
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 57888889999999999988889987776554211 12233455567766655432 23333444444444444
No 481
>PRK06101 short chain dehydrogenase; Provisional
Probab=43.25 E-value=1.6e+02 Score=24.36 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=33.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 80 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~ 80 (285)
..+|++++|--|.++|..-...|.+++++.+. ..+++.+...+.++.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~ 49 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIF 49 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCe
Confidence 56899999999999999988899997776443 344555544443333
No 482
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.15 E-value=1.9e+02 Score=23.77 Aligned_cols=78 Identities=21% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcC
Q 023227 3 EPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLE----RRIILRAFG 76 (285)
Q Consensus 3 nptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~----~~~~~~~~G 76 (285)
.|||+=|.-.+.-+..+...++. ...+++.-+ --.--.+..+|+.+|+++...-....+.. -++..+.-+
T Consensus 8 GptGvGKTTt~aKLAa~~~~~~~----~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (196)
T PF00448_consen 8 GPTGVGKTTTIAKLAARLKLKGK----KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKG 83 (196)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTT------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHhHHHHHHHHHhhccc----cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcC
Confidence 58999999998888888776654 245555533 23445677889999999877543332222 233445567
Q ss_pred CEEEEeCC
Q 023227 77 AELVLTDP 84 (285)
Q Consensus 77 a~v~~~~~ 84 (285)
.++++++.
T Consensus 84 ~D~vlIDT 91 (196)
T PF00448_consen 84 YDLVLIDT 91 (196)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEec
Confidence 78888874
No 483
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.12 E-value=1.7e+02 Score=23.30 Aligned_cols=30 Identities=33% Similarity=0.466 Sum_probs=17.2
Q ss_pred eEEEeeCCChH-HHHHHHH--HHHcCCeEEEEe
Q 023227 31 SVLIEPTSGNT-GIGLAFM--AAAKQYRLIITM 60 (285)
Q Consensus 31 ~~vv~~ssGN~-g~a~A~~--a~~~G~~~~iv~ 60 (285)
..+|-++.||. |-+++++ -+..|+++++++
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 45555666655 4444444 445799988854
No 484
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=43.04 E-value=2.1e+02 Score=24.38 Aligned_cols=53 Identities=30% Similarity=0.504 Sum_probs=34.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 023227 23 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 78 (285)
Q Consensus 23 ~g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~ 78 (285)
...+.++...++...+|..|.+++..++..|.+++++... ..+.+.++.+|++
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGAD 186 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 3455666566666667889999999999999885444332 3445555566653
No 485
>PRK07832 short chain dehydrogenase; Provisional
Probab=43.04 E-value=1.6e+02 Score=24.93 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=32.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAEL 79 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~~~~~~Ga~v 79 (285)
..+|++++|--|.++|......|.+++++-+..... .....++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 468889999999999999999999876654332111 1233445556643
No 486
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=42.95 E-value=1.5e+02 Score=24.21 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCCCCeEEEeeCCChHHH-HHHHHHHHcCCeEEEEecCCCC------HHHHHHHHHcCCEE
Q 023227 17 ISDAEAKGLITPGESVLIEPTSGNTGI-GLAFMAAAKQYRLIITMPASMS------LERRIILRAFGAEL 79 (285)
Q Consensus 17 ~~~a~~~g~~~~g~~~vv~~ssGN~g~-a~A~~a~~~G~~~~iv~p~~~~------~~~~~~~~~~Ga~v 79 (285)
.....+.|. ...++++-..|++. +.|..+...|++++++.+.... ..-++.|+..|++|
T Consensus 130 ~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 130 AEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 334445555 24555566666666 4455577789988888765322 22366677778766
No 487
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=42.83 E-value=66 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=27.4
Q ss_pred hHHHHHhhhCCCCCEEE-EccCCcccHHHHHHHHHhhCCCcEEEEEecC
Q 023227 124 TGPELWKGSGGRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 171 (285)
Q Consensus 124 ~~~EI~~q~~~~~d~iv-~~vG~Gg~~aGi~~~~k~~~~~~~vigv~~~ 171 (285)
...||+-++ +||.|+ +.+-.||++.=.+.-++..+++.+|+||+-.
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 456788887 588766 4455677666555566667788999999984
No 488
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=42.81 E-value=1.6e+02 Score=26.83 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCCC-eEecCCC-CCCCchHhHHhchHHHHHh
Q 023227 55 RLIITMPASMSLERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKTPN-AYMLQQF-ENPANPKIHYETTGPELWK 130 (285)
Q Consensus 55 ~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~g~~t~~~EI~~ 130 (285)
|..++.-++.-..--+.++.+|-++.++.+... .....+...+..++.+- ....+.. .||.. -...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~---~~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT---TTVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH---HHHHHHHHHHH
Confidence 444554444333333445667767766654322 12233444444344311 2222221 23332 11112223444
Q ss_pred hhCCCCCEEEEccCCcccHHHHHHHH
Q 023227 131 GSGGRIDALVSGIGTGGTITGAGKFL 156 (285)
Q Consensus 131 q~~~~~d~iv~~vG~Gg~~aGi~~~~ 156 (285)
+. ++|. |+++|+|+.+= +++++
T Consensus 81 ~~--~~D~-IiavGGGS~iD-~aK~i 102 (380)
T cd08185 81 EE--GCDF-VVGLGGGSSMD-TAKAI 102 (380)
T ss_pred Hc--CCCE-EEEeCCccHHH-HHHHH
Confidence 43 4665 67788776543 34443
No 489
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=42.63 E-value=2e+02 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=26.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
..+|+..+|..|.+++......|..++++...
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 67899999999999999988889977766543
No 490
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=42.55 E-value=2.3e+02 Score=27.29 Aligned_cols=104 Identities=26% Similarity=0.262 Sum_probs=64.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 110 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 110 (285)
++|..-.-|+-|+.+|..++.+|++++.+=|.. +..+ ...+|.+.. + . .++.++- +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l-------~ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----L-------DELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----H-------HHHHhhC-CEEEEcc
Confidence 467777889999999999999999988875542 2222 234565432 1 1 2233333 4444432
Q ss_pred CCCCCchHhHHhchHHHHHhhhCCCCCEEEEccCCcccHH--HHHHHHHh
Q 023227 111 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 158 (285)
Q Consensus 111 ~~~~~~~~~g~~t~~~EI~~q~~~~~d~iv~~vG~Gg~~a--Gi~~~~k~ 158 (285)
-.++. -..-+..|.++++ +++.+++-++.|+..- .+..+++.
T Consensus 203 P~t~~----t~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPE----TRGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChH----hhcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 22222 1233456788888 4789999999999864 44555553
No 491
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=42.52 E-value=1.6e+02 Score=26.60 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.4
Q ss_pred EEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCC--HHHH----HHHHHcCCEEEEeC
Q 023227 32 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMS--LERR----IILRAFGAELVLTD 83 (285)
Q Consensus 32 ~vv~~ssG--N~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~----~~~~~~Ga~v~~~~ 83 (285)
+|.....+ |.++++..+++++|++++++.|+... ...+ ...+..|.++..++
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 44444443 78999999999999999999998532 2222 23455788887766
No 492
>PRK13984 putative oxidoreductase; Provisional
Probab=42.49 E-value=1.1e+02 Score=29.92 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=37.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 81 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 81 (285)
+.|+.-.+|-.|.+.|...++.|++++|+=.+.. + ...++.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4466666999999999999999999998843321 1 2345678889988754
No 493
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=42.46 E-value=87 Score=28.42 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=37.3
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 023227 24 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 79 (285)
Q Consensus 24 g~~~~g~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~~~~Ga~v 79 (285)
+.++++...+|. ..|..|.+++..|+..|...++.+.. ++.+.+.++.+|++-
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADY 251 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCE
Confidence 466777666666 56899999999999999854444433 234777778888744
No 494
>PRK12747 short chain dehydrogenase; Provisional
Probab=42.37 E-value=1.7e+02 Score=24.42 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=35.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 83 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~--~~~~~~~~~~Ga~v~~~~ 83 (285)
..|||.++|--|.++|..-...|.++++....... ......++..|.++..+.
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 67899988999999999999999987775422211 122334555566655443
No 495
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.23 E-value=2.1e+02 Score=24.19 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=38.9
Q ss_pred eEEEeeC--CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCE-EEEeCCCCChHHHHHHHHHHHHhC
Q 023227 31 SVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAE-LVLTDPAKGMKGAVQKAEEILAKT 102 (285)
Q Consensus 31 ~~vv~~s--sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~~-~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~ 102 (285)
..|||.. ++--|.++|......|.++++.-.......+++.+ +.+|.. .+.++- .+.++..+..++..++.
T Consensus 8 ~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 8 RILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDV-ASDEQIDALFASLGQHW 82 (260)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccC-CCHHHHHHHHHHHHHHh
Confidence 5677774 34578888888888999887753322223344433 334543 233443 23344444455554443
No 496
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=42.22 E-value=2.2e+02 Score=25.99 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
+.++.-.+|..|.-+|...+..|.+++++.+..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 357777889999999999999999999987653
No 497
>PRK12742 oxidoreductase; Provisional
Probab=42.19 E-value=1.9e+02 Score=23.67 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII-LRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~~-~~~~Ga~v~~~~~ 84 (285)
..||++.+|.-|.++|......|.++++....+ ..+.+. .+..+.+.+.++-
T Consensus 8 ~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 8 KVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 678999899999999999999999877654432 223322 2445777666654
No 498
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.18 E-value=2.6e+02 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=27.8
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 62 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 62 (285)
++|..-.+|..|.++|..+...|++++++=+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45667788999999999999999999998654
No 499
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=42.16 E-value=36 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 023227 33 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 63 (285)
Q Consensus 33 vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 63 (285)
||...+|-.|.+.|.+|++.|.++.++-+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6778899999999999999999999996554
No 500
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=42.11 E-value=2.7e+02 Score=26.07 Aligned_cols=54 Identities=19% Similarity=0.045 Sum_probs=37.8
Q ss_pred eEEEeeCCChHHHHHHHHHHH------cCCe--EEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 023227 31 SVLIEPTSGNTGIGLAFMAAA------KQYR--LIITMPASMSLERRIILRAFGAELVLTDP 84 (285)
Q Consensus 31 ~~vv~~ssGN~g~a~A~~a~~------~G~~--~~iv~p~~~~~~~~~~~~~~Ga~v~~~~~ 84 (285)
+.++..++|..+..+|..+.. .+++ -.|++|..+-......+...|+++++++-
T Consensus 79 ~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 79 RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 356777778777777766541 1332 45777777677777888889999998875
Done!