Query 023231
Match_columns 285
No_of_seqs 179 out of 1418
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:29:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3090 Prohibitin-like protei 100.0 1.5E-44 3.2E-49 291.5 23.7 261 15-279 21-281 (290)
2 PRK11029 FtsH protease regulat 100.0 8.7E-44 1.9E-48 315.5 28.9 245 18-269 6-320 (334)
3 TIGR01932 hflC HflC protein. H 100.0 2.9E-43 6.2E-48 313.2 28.9 245 18-269 6-310 (317)
4 KOG3083 Prohibitin [Posttransl 100.0 6.6E-43 1.4E-47 281.7 17.0 269 7-277 2-270 (271)
5 PRK10930 FtsH protease regulat 100.0 1E-40 2.2E-45 303.5 30.4 252 18-280 83-358 (419)
6 cd03401 Band_7_prohibitin Band 100.0 1.9E-41 4E-46 283.3 23.6 194 31-225 1-195 (196)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 3.7E-40 8E-45 284.2 24.8 216 32-251 1-240 (242)
8 TIGR01933 hflK HflK protein. H 100.0 1.6E-38 3.5E-43 276.8 27.4 229 32-270 1-253 (261)
9 cd03407 Band_7_4 A subgroup of 100.0 9.7E-39 2.1E-43 277.9 25.0 226 37-269 1-251 (262)
10 cd03404 Band_7_HflK Band_7_Hfl 100.0 8.8E-38 1.9E-42 273.0 25.7 227 19-252 2-265 (266)
11 cd03406 Band_7_3 A subgroup of 100.0 6.9E-36 1.5E-40 259.1 23.0 200 28-229 1-210 (280)
12 cd03403 Band_7_stomatin_like B 100.0 1.1E-35 2.3E-40 252.0 23.5 210 35-267 1-214 (215)
13 COG0330 HflC Membrane protease 100.0 1E-32 2.2E-37 244.1 27.2 241 19-270 8-279 (291)
14 KOG2621 Prohibitins and stomat 100.0 1.4E-33 3E-38 236.0 16.6 229 16-267 39-272 (288)
15 cd03402 Band_7_2 A subgroup of 100.0 8.4E-31 1.8E-35 221.1 19.9 163 31-199 1-171 (219)
16 PF01145 Band_7: SPFH domain / 100.0 9.2E-31 2E-35 215.1 10.6 163 33-199 1-168 (179)
17 KOG2620 Prohibitins and stomat 100.0 9.8E-31 2.1E-35 216.3 7.8 189 30-226 5-198 (301)
18 smart00244 PHB prohibitin homo 100.0 2.2E-28 4.7E-33 197.5 15.6 157 30-191 1-159 (160)
19 KOG2962 Prohibitin-related mem 99.9 2.1E-24 4.6E-29 175.6 22.2 170 20-190 11-185 (322)
20 cd03400 Band_7_1 A subgroup of 99.9 6.6E-21 1.4E-25 147.5 13.0 120 72-191 3-123 (124)
21 cd03408 Band_7_5 A subgroup of 99.8 2.9E-20 6.3E-25 156.5 15.6 160 28-191 12-206 (207)
22 COG2268 Uncharacterized protei 99.8 3.3E-19 7.2E-24 164.3 21.0 176 20-195 21-218 (548)
23 KOG2668 Flotillins [Intracellu 99.8 2.5E-17 5.4E-22 141.8 21.2 157 32-192 2-168 (428)
24 cd03399 Band_7_flotillin Band_ 99.7 9.6E-18 2.1E-22 130.5 9.8 119 72-190 2-126 (128)
25 cd02106 Band_7 The band 7 doma 99.6 1.1E-14 2.3E-19 111.3 10.8 106 84-191 15-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.4 1.1E-11 2.5E-16 103.9 15.8 161 29-191 13-206 (211)
27 COG4260 Membrane protease subu 98.8 3.2E-07 6.9E-12 78.0 14.4 162 29-191 38-233 (345)
28 PTZ00491 major vault protein; 98.6 7.5E-06 1.6E-10 79.8 18.9 200 33-233 465-746 (850)
29 PF12127 YdfA_immunity: SigmaW 98.1 6.2E-05 1.4E-09 64.0 11.2 176 72-256 120-311 (316)
30 PRK13665 hypothetical protein; 97.9 0.00016 3.5E-09 61.3 10.6 157 71-236 124-293 (316)
31 COG1580 FliL Flagellar basal b 96.7 0.078 1.7E-06 42.4 13.2 80 90-179 76-157 (159)
32 COG4864 Uncharacterized protei 96.3 0.087 1.9E-06 43.9 11.3 162 86-256 139-315 (328)
33 cd03404 Band_7_HflK Band_7_Hfl 95.7 0.11 2.3E-06 45.4 10.0 104 155-260 143-250 (266)
34 cd03405 Band_7_HflC Band_7_Hfl 95.5 0.08 1.7E-06 45.4 8.5 104 154-260 120-226 (242)
35 PRK06654 fliL flagellar basal 95.1 1.1 2.4E-05 36.5 12.9 79 88-178 98-176 (181)
36 PRK07718 fliL flagellar basal 94.4 0.67 1.4E-05 36.4 10.2 52 125-178 86-139 (142)
37 PRK12785 fliL flagellar basal 94.4 1.9 4E-05 34.9 13.0 53 124-178 109-163 (166)
38 PRK11029 FtsH protease regulat 94.4 0.28 6.2E-06 44.2 9.0 87 172-260 202-291 (334)
39 TIGR01932 hflC HflC protein. H 94.4 0.31 6.6E-06 43.8 9.1 72 188-261 209-282 (317)
40 cd03407 Band_7_4 A subgroup of 92.5 0.83 1.8E-05 39.7 8.5 81 155-236 112-194 (262)
41 TIGR01933 hflK HflK protein. H 91.2 1.6 3.4E-05 37.9 8.9 79 155-234 116-198 (261)
42 PF11978 MVP_shoulder: Shoulde 90.9 1 2.2E-05 33.8 6.2 96 85-180 11-116 (118)
43 COG2268 Uncharacterized protei 89.4 4.5 9.8E-05 38.7 10.6 55 203-257 417-474 (548)
44 PF03748 FliL: Flagellar basal 88.3 7.7 0.00017 27.9 11.5 53 124-178 42-96 (99)
45 PRK05697 flagellar basal body- 85.5 15 0.00033 28.6 10.0 53 126-178 78-134 (137)
46 PRK08455 fliL flagellar basal 84.2 22 0.00047 29.2 10.8 52 125-178 126-179 (182)
47 PRK07021 fliL flagellar basal 84.2 15 0.00032 29.5 9.7 54 125-178 102-159 (162)
48 PRK10930 FtsH protease regulat 83.8 5.3 0.00012 37.3 7.9 81 154-235 211-295 (419)
49 PRK05696 fliL flagellar basal 83.5 22 0.00048 28.7 13.0 54 125-178 110-167 (170)
50 PLN03086 PRLI-interacting fact 77.0 5.1 0.00011 38.7 5.4 20 244-268 80-99 (567)
51 cd03403 Band_7_stomatin_like B 77.0 7.8 0.00017 32.3 6.1 69 151-227 117-186 (215)
52 PRK01558 V-type ATP synthase s 70.5 28 0.00061 28.8 7.8 6 262-267 122-127 (198)
53 cd03406 Band_7_3 A subgroup of 66.1 94 0.002 27.4 11.2 14 237-250 259-272 (280)
54 PF10717 ODV-E18: Occlusion-de 64.8 11 0.00023 26.5 3.4 25 4-30 23-47 (85)
55 PTZ00399 cysteinyl-tRNA-synthe 63.5 80 0.0017 31.4 10.5 38 156-193 520-562 (651)
56 PRK04057 30S ribosomal protein 56.4 75 0.0016 26.6 7.7 83 83-176 100-184 (203)
57 cd03401 Band_7_prohibitin Band 54.5 35 0.00076 27.8 5.6 23 212-234 171-193 (196)
58 PHA03029 hypothetical protein; 53.6 19 0.00042 24.6 3.1 30 10-39 55-84 (92)
59 PRK14472 F0F1 ATP synthase sub 52.8 1.2E+02 0.0026 24.5 8.3 17 140-156 42-59 (175)
60 PRK08475 F0F1 ATP synthase sub 51.6 89 0.0019 25.1 7.4 17 140-156 46-63 (167)
61 PRK10081 entericidin B membran 51.6 18 0.00039 22.6 2.5 22 10-31 1-22 (48)
62 PRK02292 V-type ATP synthase s 50.1 51 0.0011 26.9 5.9 6 262-267 118-123 (188)
63 TIGR01147 V_ATP_synt_G vacuola 49.0 63 0.0014 24.3 5.6 31 204-234 32-64 (113)
64 PRK13460 F0F1 ATP synthase sub 48.9 1.4E+02 0.003 24.0 8.3 17 140-156 40-57 (173)
65 PRK13461 F0F1 ATP synthase sub 48.7 1.1E+02 0.0023 24.2 7.4 17 140-156 29-46 (159)
66 COG0330 HflC Membrane protease 47.8 74 0.0016 27.8 6.9 61 163-225 159-224 (291)
67 PRK05759 F0F1 ATP synthase sub 46.9 1.2E+02 0.0025 23.8 7.3 8 141-148 29-36 (156)
68 PRK14474 F0F1 ATP synthase sub 46.5 1.9E+02 0.0042 24.9 9.9 18 140-157 29-47 (250)
69 TIGR03321 alt_F1F0_F0_B altern 45.8 1.9E+02 0.0042 24.7 10.0 19 140-158 29-48 (246)
70 PRK07352 F0F1 ATP synthase sub 45.6 1.2E+02 0.0026 24.3 7.4 19 138-156 41-60 (174)
71 PRK01005 V-type ATP synthase s 44.7 1.5E+02 0.0033 24.8 7.9 23 204-226 43-65 (207)
72 CHL00118 atpG ATP synthase CF0 44.2 1.6E+02 0.0034 23.2 8.2 8 141-148 47-54 (156)
73 PRK13455 F0F1 ATP synthase sub 43.7 1.8E+02 0.0038 23.7 8.2 17 141-157 52-69 (184)
74 PRK14473 F0F1 ATP synthase sub 43.0 1.4E+02 0.0031 23.6 7.3 18 140-157 32-50 (164)
75 PRK14475 F0F1 ATP synthase sub 42.7 1.7E+02 0.0038 23.3 8.1 17 141-157 35-52 (167)
76 PRK13428 F0F1 ATP synthase sub 42.6 2.3E+02 0.0049 26.8 9.6 17 141-157 26-43 (445)
77 PRK07353 F0F1 ATP synthase sub 42.0 1.6E+02 0.0034 22.6 7.3 8 141-148 30-37 (140)
78 CHL00019 atpF ATP synthase CF0 41.9 1.9E+02 0.0041 23.5 9.6 20 139-158 47-67 (184)
79 PRK01005 V-type ATP synthase s 41.4 2.1E+02 0.0046 23.9 10.5 8 238-245 108-115 (207)
80 KOG0742 AAA+-type ATPase [Post 41.2 1.7E+02 0.0037 27.6 8.1 23 202-224 206-228 (630)
81 PRK13454 F0F1 ATP synthase sub 40.9 1.5E+02 0.0033 24.0 7.3 16 140-155 55-71 (181)
82 PRK14471 F0F1 ATP synthase sub 40.4 1.7E+02 0.0036 23.2 7.3 18 140-157 32-50 (164)
83 PRK06231 F0F1 ATP synthase sub 40.2 2.2E+02 0.0047 23.7 9.9 16 141-156 73-89 (205)
84 PRK09174 F0F1 ATP synthase sub 38.4 2.3E+02 0.0051 23.6 9.6 19 140-158 77-96 (204)
85 PRK13453 F0F1 ATP synthase sub 38.3 2.1E+02 0.0045 23.0 9.9 17 140-156 42-59 (173)
86 PRK06231 F0F1 ATP synthase sub 34.9 2.4E+02 0.0052 23.5 7.6 7 184-190 73-79 (205)
87 PRK15322 invasion protein OrgB 34.8 1.4E+02 0.0031 24.9 6.0 7 262-268 114-120 (210)
88 COG5510 Predicted small secret 33.1 48 0.0011 20.2 2.3 22 10-31 1-22 (44)
89 COG2165 PulG Type II secretory 33.0 46 0.00099 25.2 2.9 29 2-30 4-32 (149)
90 PF07850 Renin_r: Renin recept 32.7 4.1 9E-05 29.7 -2.8 37 11-48 55-91 (98)
91 KOG2668 Flotillins [Intracellu 32.7 80 0.0017 28.6 4.5 25 245-269 357-385 (428)
92 PRK00753 psbL photosystem II r 32.2 47 0.001 19.5 2.0 19 15-33 19-37 (39)
93 PF03179 V-ATPase_G: Vacuolar 32.2 77 0.0017 23.1 3.8 8 207-214 33-40 (105)
94 PRK09173 F0F1 ATP synthase sub 31.2 2.6E+02 0.0056 22.0 8.0 12 180-191 23-34 (159)
95 TIGR02532 IV_pilin_GFxxxE prep 30.7 66 0.0014 17.1 2.4 19 5-23 1-19 (26)
96 PTZ00491 major vault protein; 30.1 2.1E+02 0.0045 29.3 7.4 22 263-284 824-846 (850)
97 PF06188 HrpE: HrpE/YscL/FliH 29.8 1.6E+02 0.0035 24.2 5.7 16 202-217 44-59 (191)
98 COG0711 AtpF F0F1-type ATP syn 28.9 3E+02 0.0064 21.9 7.9 49 182-232 29-81 (161)
99 PF02419 PsbL: PsbL protein; 28.2 30 0.00064 20.2 0.7 17 16-32 18-34 (37)
100 PRK10557 hypothetical protein; 27.6 66 0.0014 26.6 3.0 23 1-23 2-24 (192)
101 PF13544 N_methyl_2: Type IV p 27.5 72 0.0016 17.8 2.3 18 3-20 11-28 (31)
102 PF01015 Ribosomal_S3Ae: Ribos 27.4 2E+02 0.0043 23.9 5.8 65 84-159 107-173 (194)
103 KOG2007 Cysteinyl-tRNA synthet 26.1 3.1E+02 0.0068 26.4 7.3 18 130-147 478-495 (586)
104 PRK12613 galactose-6-phosphate 26.0 54 0.0012 25.7 2.1 36 153-189 12-47 (141)
105 PF06188 HrpE: HrpE/YscL/FliH 25.3 3.8E+02 0.0083 22.0 7.2 6 262-267 134-139 (191)
106 PRK09098 type III secretion sy 25.0 3.1E+02 0.0067 23.4 6.8 54 197-251 35-88 (233)
107 CHL00038 psbL photosystem II p 24.8 76 0.0017 18.6 2.0 18 16-33 19-36 (38)
108 PRK14756 hypothetical protein; 24.6 1.3E+02 0.0029 16.4 3.0 17 7-23 6-22 (29)
109 PF08802 CytB6-F_Fe-S: Cytochr 23.7 48 0.001 19.8 1.1 19 9-27 10-28 (39)
110 PRK08476 F0F1 ATP synthase sub 22.5 3.7E+02 0.008 20.8 7.3 19 140-158 31-50 (141)
111 PRK06568 F0F1 ATP synthase sub 22.3 4E+02 0.0087 21.1 10.2 9 182-190 27-35 (154)
112 PF07423 DUF1510: Protein of u 21.9 88 0.0019 26.4 2.8 17 7-23 12-28 (217)
113 KOG1029 Endocytic adaptor prot 21.8 4.2E+02 0.009 27.1 7.5 11 32-42 95-105 (1118)
114 PRK14762 membrane protein; Pro 21.3 55 0.0012 17.4 0.9 12 12-23 2-13 (27)
115 PF07963 N_methyl: Prokaryotic 21.0 1.1E+02 0.0024 15.3 2.0 14 6-19 1-14 (20)
116 PF06936 Selenoprotein_S: Sele 20.2 5E+02 0.011 21.4 7.9 19 158-176 28-46 (190)
No 1
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=291.49 Aligned_cols=261 Identities=55% Similarity=0.857 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeeeccCCCceeEE
Q 023231 15 ARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVN 94 (285)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkD~~~v~ 94 (285)
..+++++.+++.....|++.|+.||++++|+|+||+.++++..|+||.+||+++.+.||+|-+.+.+.....|+|-+.|+
T Consensus 21 l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVn 100 (290)
T KOG3090|consen 21 LKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVN 100 (290)
T ss_pred HHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEE
Confidence 33444555677778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 023231 95 LTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVA 174 (285)
Q Consensus 95 v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~ 174 (285)
+...+--|.+.+.++.+|+++|.||.+..|-.++.+.+++++++|+..++++.|+.++..+++.|-++..++.|-+++|.
T Consensus 101 I~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVS 180 (290)
T KOG3090|consen 101 IGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVS 180 (290)
T ss_pred eeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHHHHHHHHHHHHH
Q 023231 175 ITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAA 254 (285)
Q Consensus 175 I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~~~le~~~~~a~ 254 (285)
|+++.|.+++..+++.|++|+|||+|+++.++.|+++++..+++|+|||++++++++|.+.+ |.++.+|.+|+-+++|.
T Consensus 181 iT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn-~~fi~Lrki~aAr~IA~ 259 (290)
T KOG3090|consen 181 ITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN-PAFITLRKIEAAREIAQ 259 (290)
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC-ccceeehhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HhcCCCCEEEecCCCCCceeecCCc
Q 023231 255 TLARSPHVAYLPGGKNSNMLLALNP 279 (285)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
.++++.|.+|++++ .+++|+.+
T Consensus 260 tia~S~NkvyL~~~---~LlLn~q~ 281 (290)
T KOG3090|consen 260 TIASSANKVYLSSD---DLLLNLQD 281 (290)
T ss_pred HHhcCCCeEEeccc---ceeeeehh
Confidence 99999999999988 77887654
No 2
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=8.7e-44 Score=315.51 Aligned_cols=245 Identities=23% Similarity=0.317 Sum_probs=209.5
Q ss_pred HHHHHHHHHHhhcceEEecCCceEEEEeeccceeee------eecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCc
Q 023231 18 AFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDL 90 (285)
Q Consensus 18 ~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~ 90 (285)
+++++++++|+++|+++|++||+||++ +||++.+. +++||+||++||++++..+|+|.+.++.+.+ +.|+|+
T Consensus 6 ~~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~ 84 (334)
T PRK11029 6 IAIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEK 84 (334)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCC
Confidence 334555667888999999999999996 99997543 4899999999999999999999999999865 799999
Q ss_pred eeEEEEEEEEEeeCCCCHhHHHHHhCC-c--cccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHH----
Q 023231 91 QMVNLTLRVLSRPEVSRLPYIFQHLGL-E--YDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKR---- 162 (285)
Q Consensus 91 ~~v~v~~~v~y~i~~~~~~~~~~~~g~-~--~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~---- 162 (285)
..|.+|+.++|+| .++..++..++. + .....|.+.+++++|+++++++++++++ +|++|..++++.+++.
T Consensus 85 ~~V~VD~~V~yrI--~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~ 162 (334)
T PRK11029 85 KDLIVDSYIKWRI--SDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGT 162 (334)
T ss_pred CEEEEEEEEEEEE--CCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999 467777766542 2 2346788999999999999999999998 7999999999999954
Q ss_pred -----------------------------------hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHH------
Q 023231 163 -----------------------------------ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERS------ 201 (285)
Q Consensus 163 -----------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~------ 201 (285)
+.+|||+|.+|.|++++||+++.+++++++.|+++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aeg 242 (334)
T PRK11029 163 EDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQG 242 (334)
T ss_pred cccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998876521
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHHHHHHHHHHhcCCCCEEEecC
Q 023231 202 -------------KFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPG 267 (285)
Q Consensus 202 -------------~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le~~~~~a~~l~~~~~~~~~~~ 267 (285)
+.....|+|++++++++|+|||+|+++++++++++ |+++++ ++||+++++ ++++++++++|+
T Consensus 243 e~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~-p~~~~~~~~lea~~~~---~~~~~~~~vl~~ 318 (334)
T PRK11029 243 QEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQD-PDFYAFIRSLRAYENS---FSGNQDVMVLSP 318 (334)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH---hcCCCcEEEECC
Confidence 11234588889999999999999999999999999 999997 899999994 435567899998
Q ss_pred CC
Q 023231 268 GK 269 (285)
Q Consensus 268 ~~ 269 (285)
++
T Consensus 319 ~~ 320 (334)
T PRK11029 319 DS 320 (334)
T ss_pred Ch
Confidence 86
No 3
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=2.9e-43 Score=313.23 Aligned_cols=245 Identities=19% Similarity=0.293 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhhcceEEecCCceEEEEeeccceeee------eecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCc
Q 023231 18 AFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDL 90 (285)
Q Consensus 18 ~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~ 90 (285)
+++++++++++++||++|+|||+||++ +||++.+. +++||+||++||++++.++|++.++++.+.. +.|+|+
T Consensus 6 ~~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~ 84 (317)
T TIGR01932 6 IVVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEK 84 (317)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCC
Confidence 334445577788999999999999995 99997543 3489999999999999999999999998764 799999
Q ss_pred eeEEEEEEEEEeeCCCCHhHHHHHhCC---ccccccccchHHHHHHHHHhcCChhHHhhc-hHHH---------------
Q 023231 91 QMVNLTLRVLSRPEVSRLPYIFQHLGL---EYDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHV--------------- 151 (285)
Q Consensus 91 ~~v~v~~~v~y~i~~~~~~~~~~~~g~---~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i--------------- 151 (285)
.++.++++++|||. ++..+|.++|. ++.+..|++.+++++|+++++++++|++++ |+++
T Consensus 85 ~~V~Vd~~V~yrV~--d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~ 162 (317)
T TIGR01932 85 KDIIIDTYIRWRIE--DFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKI 162 (317)
T ss_pred CEEEEEEEEEEEEC--CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccc
Confidence 99999999999994 77888888773 235678999999999999999999999974 6555
Q ss_pred --------------HHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHH----------------
Q 023231 152 --------------SALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERS---------------- 201 (285)
Q Consensus 152 --------------~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~---------------- 201 (285)
...+.+.+.+.+.+|||+|.+|.|+++++|+++.+++.+++.|++|++.+
T Consensus 163 ~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~ 242 (317)
T TIGR01932 163 NKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGK 242 (317)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999988887754211
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHHHHHHHHHHhcCCCCEEEecCCC
Q 023231 202 ---KFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGK 269 (285)
Q Consensus 202 ---~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le~~~~~a~~l~~~~~~~~~~~~~ 269 (285)
+.....|+|++++.+++|+|||+++++++++++++ |+++++ +++|+++++ ++++++++++++++
T Consensus 243 A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~-p~~~~~~~~le~~~~~---~~~~~~~~vl~~~~ 310 (317)
T TIGR01932 243 AEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKD-PEFYSFWRSLEAYEKS---FKDNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHH---hCCCCCEEEECCCc
Confidence 12344577888899999999999999999999999 999986 899999994 44566789998875
No 4
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-43 Score=281.69 Aligned_cols=269 Identities=58% Similarity=0.933 Sum_probs=256.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeeecc
Q 023231 7 AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSG 86 (285)
Q Consensus 7 ~~~~m~~~~~~~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~ 86 (285)
++.++.++..+++.+.++..++.++.+.|+.||++|+|+||.|+.+.+.+.|.||.+||.++.+.||.+.+..+++....
T Consensus 2 aa~~l~~~~k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itG 81 (271)
T KOG3083|consen 2 AAKVLESIGKFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81 (271)
T ss_pred cchhhhhccccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccC
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcC
Q 023231 87 TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDF 166 (285)
Q Consensus 87 tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~ 166 (285)
|||-..|++...+.|+..++.++.+|+++|.+|.+..|-.+-...+++++++|+..|+++.|+.++..+++++.++...+
T Consensus 82 skdLQ~VniTlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~F 161 (271)
T KOG3083|consen 82 SKDLQNVNITLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATF 161 (271)
T ss_pred chhhhcccceEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHHHHH
Q 023231 167 NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRI 246 (285)
Q Consensus 167 Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~~~l 246 (285)
|+.+++|.|+++.+.+++.++++.|++|+|||||+++.++.|++++++.+|.||||++|+++++.++++.+..+++++.+
T Consensus 162 gl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrl 241 (271)
T KOG3083|consen 162 GLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRL 241 (271)
T ss_pred CeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCCCceeecC
Q 023231 247 EASREIAATLARSPHVAYLPGGKNSNMLLAL 277 (285)
Q Consensus 247 e~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 277 (285)
|+-++++..|+.+.|+.|+|.| .++++++
T Consensus 242 EAa~dia~~Ls~s~nv~YLp~g--~s~l~~l 270 (271)
T KOG3083|consen 242 EAAEDIAYQLSRSRNVTYLPAG--QSMLLQL 270 (271)
T ss_pred hhHHHHHHHHhcCCCceeccCC--cceeccC
Confidence 9999999999999999999965 3455543
No 5
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1e-40 Score=303.51 Aligned_cols=252 Identities=17% Similarity=0.216 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEe-eeeccCCCceeEEEE
Q 023231 18 AFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTF-SSVSGTKDLQMVNLT 96 (285)
Q Consensus 18 ~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~tkD~~~v~v~ 96 (285)
+++++++++|+++|+++|+++|+|||+ +||++ ..+++||+||++||++++..+|++.+.... +..+.|+|+..|.|+
T Consensus 83 ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~-~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd 160 (419)
T PRK10930 83 IAAAAVVIIWAASGFYTIKEAERGVVT-RFGKF-SHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE 160 (419)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ECCcC-cceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEE
Confidence 345555667889999999999999995 99996 468999999999999999999988764332 234699999999999
Q ss_pred EEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEE
Q 023231 97 LRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDV 173 (285)
Q Consensus 97 ~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v 173 (285)
+.++|||. ++..++. +..+.+..|++.+++++|+++++++++++++ .|++|..++.+.+++.+++| ||+|.+|
T Consensus 161 ~~VqYrI~--Dp~~~lf--~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V 236 (419)
T PRK10930 161 MNVQYRVT--DPEKYLF--SVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDV 236 (419)
T ss_pred EEEEEEEC--CHHHHHH--hccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 99999994 5555543 3466778899999999999999999999998 59999999999999999987 9999999
Q ss_pred EEeeccCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 023231 174 AITHLSYGAEFSRAVEQKQVAQQEAER-------------------SKFVVMKADQERRAAIIRAEGESEAAQLISEATS 234 (285)
Q Consensus 174 ~I~~i~~p~~~~~ai~~~~~a~qeae~-------------------~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~ 234 (285)
.|++++||+++++++++.+.|+++.++ ++..+.+|+|++++.+++|+|||+++..+.++|.
T Consensus 237 ~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~ 316 (419)
T PRK10930 237 NFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK 316 (419)
T ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 999999999999999887777654332 2235667899999999999999988666556999
Q ss_pred ccCccchHH-HHHHHHHHHHHHhcCCCCEEEecCCCCCceeecCCcc
Q 023231 235 KFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPA 280 (285)
Q Consensus 235 ~~~p~~~~~-~~le~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (285)
++ |++++. .|||+++++.. +.+.++++.+++..++|.|+.-
T Consensus 317 ka-P~vtr~RlYletme~vl~----~~~kvivd~~~~~~~~lpl~~~ 358 (419)
T PRK10930 317 AA-PEITRERLYIETMEKVLG----HTRKVLVNDKGGNLMVLPLDQM 358 (419)
T ss_pred hC-HHHHHHHHHHHHHHHHHc----cCCEEEEeCCCCeeEEeechHh
Confidence 99 999997 58999999763 3445666665455567776653
No 6
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.9e-41 Score=283.32 Aligned_cols=194 Identities=66% Similarity=1.030 Sum_probs=184.1
Q ss_pred ceEEecCCceEEEEeeccceee-eeecCceeeecCCcceeEEEeeeeEEeEeeeeccCCCceeEEEEEEEEEeeCCCCHh
Q 023231 31 SLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLP 109 (285)
Q Consensus 31 ~~~~V~~g~~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkD~~~v~v~~~v~y~i~~~~~~ 109 (285)
||++|++|++||++ +||+... .+++||+||++||++++..+|++.+++++...+.|+|++.|++++.+.|++.+++++
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999997 7887544 389999999999999999999999999988778999999999999999999988899
Q ss_pred HHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHH
Q 023231 110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE 189 (285)
Q Consensus 110 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~ 189 (285)
.+|..+|.++.+..|.+.+++.+|+++++|+++|++++|++|+.++.+.+++.+.+|||.|.++.|+++++|+++.++|+
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 99999997777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 023231 190 QKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEA 225 (285)
Q Consensus 190 ~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a 225 (285)
+++.|+|+++++++++.+|++|+++++++|+|||+|
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999987
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=3.7e-40 Score=284.22 Aligned_cols=216 Identities=29% Similarity=0.353 Sum_probs=192.3
Q ss_pred eEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhH
Q 023231 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPY 110 (285)
Q Consensus 32 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~ 110 (285)
+++|+|||+||++ +||++.+.+++||+||++||+++++.+|++.+.++.+.. +.|+|++++++++.+.|||. ++..
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~ 77 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLR 77 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHH
Confidence 5799999999996 999976667999999999999999999999999887654 79999999999999999995 6678
Q ss_pred HHHHhCCcc--ccccccchHHHHHHHHHhcCChhHHhhc-hHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023231 111 IFQHLGLEY--DEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (285)
Q Consensus 111 ~~~~~g~~~--~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (285)
+|.+++... .+..|.+.+++.+|+++++++++|++++ |++|++++.+.+++.+++|||+|.+|.|++|++|+++.++
T Consensus 78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a 157 (242)
T cd03405 78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES 157 (242)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence 888877432 2478999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHH
Q 023231 188 VEQKQVAQQEAERS-------------------KFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIE 247 (285)
Q Consensus 188 i~~~~~a~qeae~~-------------------~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le 247 (285)
|++++.|+++...+ +..+..|++++++.+++|+|||+++++++++++++ |+++.+ ++||
T Consensus 158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~-p~~~~~~~~l~ 236 (242)
T cd03405 158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKD-PEFYAFYRSLE 236 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 98887776644321 23467899999999999999999999999999998 999996 8999
Q ss_pred HHHH
Q 023231 248 ASRE 251 (285)
Q Consensus 248 ~~~~ 251 (285)
+++.
T Consensus 237 ~~~~ 240 (242)
T cd03405 237 AYRN 240 (242)
T ss_pred HHHh
Confidence 9875
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.6e-38 Score=276.83 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=194.9
Q ss_pred eEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEE-eEeeeeccCCCceeEEEEEEEEEeeCCCCHhH
Q 023231 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRP-HTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPY 110 (285)
Q Consensus 32 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~-~~~~~~~~tkD~~~v~v~~~v~y~i~~~~~~~ 110 (285)
+++|+|||+||++ +||++ .++++||+||++||+++++.+|++.+. +.-+..+.|+|+..|.+++.++|||. ++..
T Consensus 1 ~~iV~~ge~~Vv~-~fGk~-~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGKY-HRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT--DPYK 76 (261)
T ss_pred CEEeCCCeEEEEE-EcCcc-ccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHH
Confidence 5899999999995 99996 468999999999999999999997643 22222368999999999999999995 4455
Q ss_pred HHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCHHHHHH
Q 023231 111 IFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGAEFSRA 187 (285)
Q Consensus 111 ~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a 187 (285)
++ ++.++.+..|.+.+++++|+++++++++++++ +|++|++++.+.+++.++.| ||+|.+|.|++++||+++.++
T Consensus 77 ~~--~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 77 YL--FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HH--HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 43 34566778899999999999999999999998 89999999999999999965 999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHH
Q 023231 188 VEQKQVAQQEAERS-------------------KFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIE 247 (285)
Q Consensus 188 i~~~~~a~qeae~~-------------------~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le 247 (285)
+++++.|+|++++. +..+..|++++++++++|+|||++.++++++++++ |+++++ +++|
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~-p~~~~~~~~le 233 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKA-PDVTRERLYLE 233 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 99988887765431 12356788888999999999999999999999999 999987 7999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCC
Q 023231 248 ASREIAATLARSPHVAYLPGGKN 270 (285)
Q Consensus 248 ~~~~~a~~l~~~~~~~~~~~~~~ 270 (285)
+++++. ++.+++++++++++
T Consensus 234 ~~~~~~---~~~~~~~~~~~~~~ 253 (261)
T TIGR01933 234 TMEKVL---SNTRKVLLDDKKGN 253 (261)
T ss_pred HHHHHH---ccCCeEEEECCCCC
Confidence 999854 35667788877654
No 9
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=9.7e-39 Score=277.87 Aligned_cols=226 Identities=20% Similarity=0.291 Sum_probs=193.8
Q ss_pred CCceEEEEeeccceeeeeecCceeeecCCccee-EEEeeeeEEeEeeeeccCCCceeEEEEEEEEEeeCCCCHhHHHHHh
Q 023231 37 GGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHL 115 (285)
Q Consensus 37 ~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~ 115 (285)
+|++||| .+||++ .++++||+||++||++++ ..++++.++++++..+.|+|++.|+++++++|||.+.++..++.++
T Consensus 1 q~~~~Vv-~rfGk~-~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~ 78 (262)
T cd03407 1 QSQVAII-ERFGKF-FKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL 78 (262)
T ss_pred CcEEEEE-eecCcc-cccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence 4899999 599986 468999999999999997 4899999999998888999999999999999999876666666666
Q ss_pred CCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023231 116 GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQ 195 (285)
Q Consensus 116 g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~ 195 (285)
+ +....|.+.+++++|+++++++++|++++|++|+..+.+.+++.+++|||.|.+|.|++++||++++++|++++.|+
T Consensus 79 ~--~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~ 156 (262)
T cd03407 79 G--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ 156 (262)
T ss_pred C--CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4 33558999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH----H----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc------------CccchH----HHHHHHHHH
Q 023231 196 QEAERS----K----FVVMKADQERRAAIIRAEGESEAAQLISEATSKF------------GLGLIE----LRRIEASRE 251 (285)
Q Consensus 196 qeae~~----~----~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~------------~p~~~~----~~~le~~~~ 251 (285)
+++++. + ..+..|++++++.+++|+|+|++.++.+++.++. .|+..+ .+++|++++
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~ 236 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA 236 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 876643 1 4567788888999999999988888888876632 133333 378999999
Q ss_pred HHHHhcCCCCEEEecCCC
Q 023231 252 IAATLARSPHVAYLPGGK 269 (285)
Q Consensus 252 ~a~~l~~~~~~~~~~~~~ 269 (285)
+++ ++++++++|.+.
T Consensus 237 ~~~---~~~kviv~p~~~ 251 (262)
T cd03407 237 YGR---SSSTVVFRPHGP 251 (262)
T ss_pred HHh---CCCCEEEecCCC
Confidence 876 345889999776
No 10
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=8.8e-38 Score=272.96 Aligned_cols=227 Identities=22% Similarity=0.238 Sum_probs=184.5
Q ss_pred HHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEE-eeeeE----------EeE--e-eee
Q 023231 19 FGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIF-DIRTR----------PHT--F-SSV 84 (285)
Q Consensus 19 ~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~-~~~~~----------~~~--~-~~~ 84 (285)
++++++++|+++|+++|+|||+||++ +||++. .+++||+||++||++++..+ +++.+ ... . +..
T Consensus 2 ~~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T cd03404 2 IAALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESL 79 (266)
T ss_pred hHHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccc
Confidence 34556677788999999999999995 999975 78999999999998887544 33221 111 1 123
Q ss_pred ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhc-hHHHHHHHHHHHHHHh
Q 023231 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRA 163 (285)
Q Consensus 85 ~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~v~~~l~~~l 163 (285)
+.|+||..+.+++.+.|||. ++..++. +.++.+..|.+.+++++|+++++++++|++++ |+++.+++.+.+++.+
T Consensus 80 v~T~D~~~v~vd~~v~yrI~--d~~~~~~--~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~ 155 (266)
T cd03404 80 MLTGDENIVDVEFAVQYRIS--DPYDYLF--NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAIL 155 (266)
T ss_pred eEeCCCCEEEEEEEEEEEEC--CHHHHHh--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 68999999999999999995 3444432 34556678999999999999999999999996 9999999999999999
Q ss_pred hcC--CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhH
Q 023231 164 RDF--NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSK-------------------FVVMKADQERRAAIIRAEGE 222 (285)
Q Consensus 164 ~~~--Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~-------------------~~i~~A~aea~~~~~~A~ae 222 (285)
..| ||+|.+|.|++++||+++.++++++..|+|++++++ ..+..|++++++.+++|+||
T Consensus 156 ~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~ 235 (266)
T cd03404 156 DAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE 235 (266)
T ss_pred hccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 976 999999999999999999999999888887655322 34556777778888888889
Q ss_pred HHHHHHHHHHhhccCccchH-HHHHHHHHHH
Q 023231 223 SEAAQLISEATSKFGLGLIE-LRRIEASREI 252 (285)
Q Consensus 223 a~a~~~~~~a~~~~~p~~~~-~~~le~~~~~ 252 (285)
+++.+++++++.++ |+++. ..++++++++
T Consensus 236 a~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 265 (266)
T cd03404 236 AARFESLLAEYKKA-PDVTRERLYLETMEEV 265 (266)
T ss_pred HHHHHHHHHHHhhC-hHHHHHHHHHHHHHHh
Confidence 99999999999988 88665 4788888763
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6.9e-36 Score=259.05 Aligned_cols=200 Identities=18% Similarity=0.267 Sum_probs=178.0
Q ss_pred hhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEee-eeccCCCceeEEEE-EEEEEeeCC
Q 023231 28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS-SVSGTKDLQMVNLT-LRVLSRPEV 105 (285)
Q Consensus 28 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~tkD~~~v~v~-~~v~y~i~~ 105 (285)
+++|+++|++||+||++ +||++.+.+++||+||++||++++..++++.++++.+ ..+.|+||+.+.+| +.++|+++|
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 46799999999999996 9999877789999999999999999999999998875 44789999999999 568888888
Q ss_pred CCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCH
Q 023231 106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGA 182 (285)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 182 (285)
..+...+.+|+.++....|.+.+++++|+++++++++|+++ +|+++...+++.+++.+..| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 87777777777777888999999999999999999999998 79999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023231 183 EFSRAVEQKQVAQQEAE-----RSKFVVMKADQERRAAIIRAEGESEAAQLI 229 (285)
Q Consensus 183 ~~~~ai~~~~~a~qeae-----~~~~~i~~A~aea~~~~~~A~aea~a~~~~ 229 (285)
++.+++ +++.|+.+.. ++++...+||+++.+.+++|+|+|+..++.
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~ 210 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL 210 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence 999998 5788877655 456677889999999999999988877654
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=1.1e-35 Score=252.05 Aligned_cols=210 Identities=27% Similarity=0.387 Sum_probs=178.7
Q ss_pred ecCCceEEEEeeccceeeeeecCceeeecCCccee-EEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHH
Q 023231 35 VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIF 112 (285)
Q Consensus 35 V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~ 112 (285)
|+|||+||++ +||++. ++++||+||++||++++ +.+|++.++++++.+ +.|+|++++.+++.+.|||. ++..++
T Consensus 1 V~~ge~~Vv~-~~G~~~-~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~ 76 (215)
T cd03403 1 VPQYERGVVE-RLGKYH-RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAV 76 (215)
T ss_pred CCcceEEEEE-EcCcCc-cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHH
Confidence 7899999996 999975 46999999999999999 999999999999765 79999999999999999994 445555
Q ss_pred HHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHH
Q 023231 113 QHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQ 192 (285)
Q Consensus 113 ~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~ 192 (285)
.. .++++..+.+.+++++|+++++++++|++++|+++++.+++.+++.+.+|||+|++|.|+++++|+++.+++++++
T Consensus 77 ~~--~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 154 (215)
T cd03403 77 YG--VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA 154 (215)
T ss_pred hc--CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence 43 3445668999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc--CccchHHHHHHHHHHHHHHhcCCCCEEEecC
Q 023231 193 VAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKF--GLGLIELRRIEASREIAATLARSPHVAYLPG 267 (285)
Q Consensus 193 ~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~--~p~~~~~~~le~~~~~a~~l~~~~~~~~~~~ 267 (285)
.|+ .++++++++|+|++++.++.+++.++. +|.+++++++|+++.++++ .+..+++++
T Consensus 155 ~A~--------------~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~ 214 (215)
T cd03403 155 EAE--------------REKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKE---AASTVVFPA 214 (215)
T ss_pred HHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---cCCeEEeeC
Confidence 544 445667777778888888877777532 2889999999999998875 344454443
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=244.10 Aligned_cols=241 Identities=30% Similarity=0.414 Sum_probs=189.5
Q ss_pred HHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeec-CceeeecCC---cc-eeEEEeeeeEEeEe-eee-ccCCCce
Q 023231 19 FGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIG-EGTHFLIPW---LQ-KPFIFDIRTRPHTF-SSV-SGTKDLQ 91 (285)
Q Consensus 19 ~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~-pG~~~~~P~---~~-~v~~~~~~~~~~~~-~~~-~~tkD~~ 91 (285)
++++++++++++++++|++++.++++ +||++. +.++ ||+||++|| +. ...+++.+.++++. +.+ +.|+|+.
T Consensus 8 ~~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~ 85 (291)
T COG0330 8 ILLVILIVLLFSSIFVVKEGERGVVL-RFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV 85 (291)
T ss_pred HHHHHHHHHHHceeEEEcCCceEEEE-Eeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCC
Confidence 36667788889999999999999995 999964 5777 999999999 33 34677888888888 565 7999999
Q ss_pred eEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchH-HHHHHHHHHHHHHhhcCCeEE
Q 023231 92 MVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP-HVSALVRESLIKRARDFNIVL 170 (285)
Q Consensus 92 ~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v 170 (285)
.|.+|+.++||+. ++..++.+ .+..+..+.+.+++.+|++++++++++++++|+ .+...+.+.+++.+++|||.|
T Consensus 86 ~V~vd~~v~~rv~--d~~~~~~~--v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V 161 (291)
T COG0330 86 IVSVDAVVQYRVT--DPQKAVYN--VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV 161 (291)
T ss_pred EEEEEEEEEEEEc--CHHHHHHh--cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence 9999999999995 44444433 455788899999999999999999999999888 999999999999999999999
Q ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-----------------
Q 023231 171 DDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEAT----------------- 233 (285)
Q Consensus 171 ~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~----------------- 233 (285)
.+|.|+++.+|+++..++.+++.|+++.+. .+.+|++++++.+++|+|++++..+++++.
T Consensus 162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~ 238 (291)
T COG0330 162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKII 238 (291)
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 999999999999999999999988876654 344455544444444444444444444443
Q ss_pred ----hcc--CccchHHHHHHHHHHHHHHhcCCCCEEEecCCCC
Q 023231 234 ----SKF--GLGLIELRRIEASREIAATLARSPHVAYLPGGKN 270 (285)
Q Consensus 234 ----~~~--~p~~~~~~~le~~~~~a~~l~~~~~~~~~~~~~~ 270 (285)
.+. -+.+..+|+++.+.+.+.. ++++++++|.+..
T Consensus 239 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~v~~p~~~~ 279 (291)
T COG0330 239 AAALREAPAAPQALAQRYLEELLEIALA--GNSKVVVVPNSAG 279 (291)
T ss_pred HhhcccccchhHHHHHHHHHHHHHHhhC--CCCeEEEecCCcc
Confidence 333 1456677889888886542 3566777776643
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=1.4e-33 Score=235.99 Aligned_cols=229 Identities=22% Similarity=0.275 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHhhcceEEecCCceEEEEeeccceee-eeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeE
Q 023231 16 RAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMV 93 (285)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v 93 (285)
.++++++-..+-++.|+.+|++.|+.|+| |+|++.. ...|||+.|++|+++++.++|+|.+.+++|++ ..|||.+.+
T Consensus 39 S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtv 117 (288)
T KOG2621|consen 39 SFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTI 117 (288)
T ss_pred HHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEE
Confidence 33344444556667788999999999999 9999643 46799999999999999999999999999998 799999999
Q ss_pred EEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEE
Q 023231 94 NLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDV 173 (285)
Q Consensus 94 ~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v 173 (285)
.+|+.++||+. |+..-+. +.++.....+-.+++.+|+++++.++.|++++|+.|+.++...|++....|||+|++|
T Consensus 118 sVdAvVyyri~--dpi~sv~--~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRV 193 (288)
T KOG2621|consen 118 SVDAVVYYRIS--DPIIAVN--NVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERV 193 (288)
T ss_pred EeceEEEEEec--CHHHHHH--hccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEE
Confidence 99999999995 4444443 3566666788899999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---ccCccchHHHHHHHHH
Q 023231 174 AITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATS---KFGLGLIELRRIEASR 250 (285)
Q Consensus 174 ~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~---~~~p~~~~~~~le~~~ 250 (285)
.|+|+++|.+.++++... +| |..++.++++.||||..|.+.+++|.. ++ |..+++|+|+++.
T Consensus 194 EikDvrlp~qlqramaae----Ae----------A~reA~Akviaaege~~as~al~~aa~v~~~s-p~alqLryLqtl~ 258 (288)
T KOG2621|consen 194 EIKDVRLPAQLQRAMAAE----AE----------ATREARAKVIAAEGEKKASEALKEAADVISES-PIALQLRYLQTLN 258 (288)
T ss_pred EEeeeechHhhhhhhhch----hh----------hhhhhhhhHHHHHhhhHHHHHHHHhhccccCC-chhhhhhhhhcch
Confidence 999999999999888752 22 567788899999999999999988764 56 9999999999998
Q ss_pred HHHHHhcCCCCEEEecC
Q 023231 251 EIAATLARSPHVAYLPG 267 (285)
Q Consensus 251 ~~a~~l~~~~~~~~~~~ 267 (285)
.++. ..+++++.|-
T Consensus 259 sia~---e~~~tivfP~ 272 (288)
T KOG2621|consen 259 SIAA---EKNSTIVFPL 272 (288)
T ss_pred hhhc---CCCCCcccCC
Confidence 8764 4566777763
No 15
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=8.4e-31 Score=221.12 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=143.8
Q ss_pred ceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHh
Q 023231 31 SLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLP 109 (285)
Q Consensus 31 ~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~ 109 (285)
|+++|+|||.||++ +||++...+.+||+||++||++ ..++|++.++++.+.+ +.|+|+.++.+++.+.|||. |+.
T Consensus 1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~--Dp~ 76 (219)
T cd03402 1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV--DTA 76 (219)
T ss_pred CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc--CHH
Confidence 68999999999995 9999766566999999999985 4789999999998876 79999999999999999994 455
Q ss_pred HHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-------chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH
Q 023231 110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-------ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA 182 (285)
Q Consensus 110 ~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 182 (285)
+++. +.++++..|.+.+++++|+++++++++++++ +|+++.+++.+.+++.++.|||+|.++.|+++.||+
T Consensus 77 ka~~--~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ 154 (219)
T cd03402 77 KAVF--NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP 154 (219)
T ss_pred HHHH--HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence 5533 3456678999999999999999999999985 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023231 183 EFSRAVEQKQVAQQEAE 199 (285)
Q Consensus 183 ~~~~ai~~~~~a~qeae 199 (285)
++.++|.++++|+++.+
T Consensus 155 ei~~am~~R~~Ae~~~~ 171 (219)
T cd03402 155 EIAQAMLQRQQASAIIA 171 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999876655543
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=9.2e-31 Score=215.14 Aligned_cols=163 Identities=33% Similarity=0.523 Sum_probs=113.4
Q ss_pred EEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeee---eccCCCceeEEEEEEEEEeeCCCCHh
Q 023231 33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS---VSGTKDLQMVNLTLRVLSRPEVSRLP 109 (285)
Q Consensus 33 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~tkD~~~v~v~~~v~y~i~~~~~~ 109 (285)
++|+|||+||++ ++|++.. +++||+||++||+++++.+|++.++++++. .+.|+|++++.+++.+.|++ +++.
T Consensus 1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP 76 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence 579999999996 7999754 899999999999899999999999999998 68999999999999999999 5667
Q ss_pred HHHHHh--CCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023231 110 YIFQHL--GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (285)
Q Consensus 110 ~~~~~~--g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (285)
.++.++ +.+..+..|++.+++++|++++++++++++++|.++.+.+.+.|++.+.++||+|.+|+|.++++|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 777777 346788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023231 188 VEQKQVAQQEAE 199 (285)
Q Consensus 188 i~~~~~a~qeae 199 (285)
+++++.++++++
T Consensus 157 i~~~~~a~~~~~ 168 (179)
T PF01145_consen 157 IEEKQRAEQEAQ 168 (179)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH
Confidence 999888877764
No 17
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.97 E-value=9.8e-31 Score=216.31 Aligned_cols=189 Identities=23% Similarity=0.296 Sum_probs=151.3
Q ss_pred cceEE--ecCCceEEEEeeccceeeeeecCceeeecCCcceeE-EEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCC
Q 023231 30 SSLYT--VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPF-IFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEV 105 (285)
Q Consensus 30 ~~~~~--V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~-~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~ 105 (285)
.||.. ||+.+++|+ +||||. +++++||+||..|+++++. ...++......+.+ ..|+|++.++++.+++||+-.
T Consensus 5 ~n~vi~~VpQ~~a~Vv-ER~GkF-~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~d 82 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVV-ERFGKF-HRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVD 82 (301)
T ss_pred ceeeEEeechhHhHHH-HHhhhh-hhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEec
Confidence 45555 999999999 899994 6799999999999988864 33444445555554 699999999999999999953
Q ss_pred CCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHH
Q 023231 106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFS 185 (285)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 185 (285)
..... ..||.++++..+..++++.+|+.++++++|.+|.+|+.++..+.++++..++.||++|....|+||.||+.+.
T Consensus 83 p~~~d--AsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~ 160 (301)
T KOG2620|consen 83 PYADD--ASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVK 160 (301)
T ss_pred ccccc--cccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHH
Confidence 33221 2367888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHH
Q 023231 186 RAVEQKQVAQQEAERSK-FVVMKADQERRAAIIRAEGESEAA 226 (285)
Q Consensus 186 ~ai~~~~~a~qeae~~~-~~i~~A~aea~~~~~~A~aea~a~ 226 (285)
++|+... +|+|.+ +.+.++|+++++.+.+||||+++.
T Consensus 161 ~AM~~q~----~AeR~krAailesEger~~~InrAEGek~s~ 198 (301)
T KOG2620|consen 161 RAMNMQN----EAERMKRAAILESEGERIAQINRAEGEKESK 198 (301)
T ss_pred HHHHHHH----HHHHHHHHHHhhhhhhhHHhhhhhcchhhhH
Confidence 9998743 333332 345555555555555555555444
No 18
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=2.2e-28 Score=197.46 Aligned_cols=157 Identities=29% Similarity=0.464 Sum_probs=138.8
Q ss_pred cceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCH
Q 023231 30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRL 108 (285)
Q Consensus 30 ~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~ 108 (285)
+|+++|+|||+||++ ++|++.+ +++||+||++||+++++.++++.+++..+.. +.|+|++++.+++.+.||+. +..
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~-d~~ 77 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL-DPL 77 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc-cHH
Confidence 589999999999995 9999765 8999999999999999999999999988764 69999999999999999974 223
Q ss_pred hHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023231 109 PYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (285)
Q Consensus 109 ~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (285)
..++...|.+ ...|.+.+++++|+++++++++|+++ +|+++++.+.+.+++.+++||++|.++.|+++++|++++++
T Consensus 78 ~~~~~~~~~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~a 155 (160)
T smart00244 78 KAVYRVLDAD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEA 155 (160)
T ss_pred HHhhhcCCHH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHH
Confidence 3333333222 15899999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHH
Q 023231 188 VEQK 191 (285)
Q Consensus 188 i~~~ 191 (285)
++++
T Consensus 156 i~~k 159 (160)
T smart00244 156 MEQQ 159 (160)
T ss_pred HHhh
Confidence 9875
No 19
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=175.59 Aligned_cols=170 Identities=13% Similarity=0.249 Sum_probs=150.8
Q ss_pred HHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEE-E
Q 023231 20 GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLT-L 97 (285)
Q Consensus 20 ~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~-~ 97 (285)
++.+++.+++++++.|++||+||.| |-|.....+.+||+|..+||+.++..+.++.|+-+.... |.|+.|+.+.+| +
T Consensus 11 ~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrI 89 (322)
T KOG2962|consen 11 AIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRI 89 (322)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehh
Confidence 3344556678889999999999997 877777789999999999999999999999999888766 899999999987 3
Q ss_pred EEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEE
Q 023231 98 RVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVA 174 (285)
Q Consensus 98 ~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~ 174 (285)
-+.-++.|+.+..+..+|+.|+...++-+.+...+...|+.+++.+++- -.++|.+.++.+|+.+|..+ |++|..|+
T Consensus 90 EVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVR 169 (322)
T KOG2962|consen 90 EVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVR 169 (322)
T ss_pred hhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 4444567788889999999999999999999999999999999999998 58999999999999999865 99999999
Q ss_pred EeeccCCHHHHHHHHH
Q 023231 175 ITHLSYGAEFSRAVEQ 190 (285)
Q Consensus 175 I~~i~~p~~~~~ai~~ 190 (285)
++.+..|+.+++..+.
T Consensus 170 VTKPkIPEaiRrN~E~ 185 (322)
T KOG2962|consen 170 VTKPKIPEAIRRNFEL 185 (322)
T ss_pred ecCCCChHHHHHhHHH
Confidence 9999999999988754
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.86 E-value=6.6e-21 Score=147.50 Aligned_cols=120 Identities=17% Similarity=0.316 Sum_probs=113.5
Q ss_pred EeeeeEEeEeeeeccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh-chHH
Q 023231 72 FDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPH 150 (285)
Q Consensus 72 ~~~~~~~~~~~~~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~-~R~~ 150 (285)
||++.++++.+..+.|+||+.+.+++++.|||.+.++..+|.++|.+..+..|.+.+++++|+++++++++|+++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 678888888888889999999999999999999889889999998887778999999999999999999999997 7999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023231 151 VSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (285)
Q Consensus 151 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 191 (285)
|.+++.+.+++.+.+|||.|.+|+|+++++|+++.++|++|
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999976
No 21
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.85 E-value=2.9e-20 Score=156.51 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=133.7
Q ss_pred hhcceEEecCCceEEEEeeccceeeeeecCceeeec----CCc---------------ceeEEEeeeeEEeEe-------
Q 023231 28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLI----PWL---------------QKPFIFDIRTRPHTF------- 81 (285)
Q Consensus 28 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~----P~~---------------~~v~~~~~~~~~~~~------- 81 (285)
..+|..+|++||.+|++ ++|++.+ +++||.|+.+ |++ ..++.++.+.+....
T Consensus 12 ~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 12 KNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred ccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 46789999999999997 9999764 6788877655 433 236677777765532
Q ss_pred eeeccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCc-------cccccccchHHHHHHHHHhcCChhHHhhc--hHHHH
Q 023231 82 SSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLE-------YDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVS 152 (285)
Q Consensus 82 ~~~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~-------~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~ 152 (285)
.....|+|++++.++..+.|+| .|+..++.+++.. .....+++.+++++|++++++++++++.+ |++++
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI--~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~ 167 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKV--TDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS 167 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEE--cCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence 2234788999999999999999 5778899888532 34568999999999999999999999986 99999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023231 153 ALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (285)
Q Consensus 153 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 191 (285)
+.+++.+++.+++||++|.+|.|+++++|+++++++.++
T Consensus 168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999999998864
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=3.3e-19 Score=164.30 Aligned_cols=176 Identities=17% Similarity=0.152 Sum_probs=141.8
Q ss_pred HHHHHHHHhh--cceEEecCCceEEEEeec-c-----ceeeeeecCceeeecCCcceeEEEeeeeEEeEeee-eccCCCc
Q 023231 20 GLGAAATVLN--SSLYTVDGGERAVLFDRF-R-----GVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKDL 90 (285)
Q Consensus 20 ~l~~~~~~~~--~~~~~V~~g~~gVv~~~~-G-----~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkD~ 90 (285)
+++++++||+ ..|.+.++++.-|+.-++ | +...+++.+|+||++|+++...+++++...+++.. .+.|+||
T Consensus 21 i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg 100 (548)
T COG2268 21 ILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDG 100 (548)
T ss_pred HHHHHHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCC
Confidence 3333444444 344556666666663112 0 23456889999999998899999999999999884 4799999
Q ss_pred eeEEEEEEEEEeeCC--CCHhHHHHHhCCc----cccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhh
Q 023231 91 QMVNLTLRVLSRPEV--SRLPYIFQHLGLE----YDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR 164 (285)
Q Consensus 91 ~~v~v~~~v~y~i~~--~~~~~~~~~~g~~----~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~ 164 (285)
.++++++.+..++.+ .++..+..+||.+ +....+...+++.+|.+++++++++++.+|..|.+.+...+...|+
T Consensus 101 ~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~ 180 (548)
T COG2268 101 MPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLS 180 (548)
T ss_pred CccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHH
Confidence 999999999999864 3566777778765 4566788899999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEeeccCC-------HHHHHHHHHHHHHH
Q 023231 165 DFNIVLDDVAITHLSYG-------AEFSRAVEQKQVAQ 195 (285)
Q Consensus 165 ~~Gi~v~~v~I~~i~~p-------~~~~~ai~~~~~a~ 195 (285)
+.|+.++++.|.++..+ .+|.++...+.+++
T Consensus 181 k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~q 218 (548)
T COG2268 181 KMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQ 218 (548)
T ss_pred hcCeeeeeeeecccccccccccChhhhhhhcChHHHHH
Confidence 99999999999999998 89999987775443
No 23
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.79 E-value=2.5e-17 Score=141.83 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=131.2
Q ss_pred eEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhH
Q 023231 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPY 110 (285)
Q Consensus 32 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~ 110 (285)
|++..|++..++ +.+| +.+..+-+| .|.||| +++.++|+.+.++++..+ +.|+.|+++.+...++..+..+++..
T Consensus 2 f~~~~~~~~l~i-tg~g-~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAI-TGGG-IEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEe-eccc-ccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 566778888887 5655 445556666 577788 999999999999999998 79999999999999999998777554
Q ss_pred HHHH-----hC--CccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH-
Q 023231 111 IFQH-----LG--LEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA- 182 (285)
Q Consensus 111 ~~~~-----~g--~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 182 (285)
+... +| .+....++...+++..|.++++++++|+|.+|.+|...+++..+.+|..+||.|.+.+|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 4332 23 234566788899999999999999999999999999999999999999999999999999998777
Q ss_pred -HHHHHHHHHH
Q 023231 183 -EFSRAVEQKQ 192 (285)
Q Consensus 183 -~~~~ai~~~~ 192 (285)
+|..++.+++
T Consensus 158 ~~YlssLGka~ 168 (428)
T KOG2668|consen 158 HEYLSSLGKAT 168 (428)
T ss_pred hHHHHHhhhHH
Confidence 6888885444
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.74 E-value=9.6e-18 Score=130.48 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=104.0
Q ss_pred EeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCC--HhHHHHHhCC---ccccccccchHHHHHHHHHhcCChhHHh
Q 023231 72 FDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSR--LPYIFQHLGL---EYDEKVLPSIGNEVLKAVVAQFNADQLL 145 (285)
Q Consensus 72 ~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~--~~~~~~~~g~---~~~~~~l~~~~~~~lr~~~~~~~~~ei~ 145 (285)
++++.+.++++.+ +.|+|++++.+++++.|||.+.. +...+.+|+. +..+..+.+.+++++|+++++++++|++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5788889998876 69999999999999999996544 3344555542 4467789999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023231 146 TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ 190 (285)
Q Consensus 146 ~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~ 190 (285)
++|++|.+++.+.++..+++||++|.++.|+++++|+++.+++.+
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 999999999999999999999999999999999999999887753
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.59 E-value=1.1e-14 Score=111.34 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=93.4
Q ss_pred eccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHh
Q 023231 84 VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRA 163 (285)
Q Consensus 84 ~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l 163 (285)
.+.|+|++++.+++++.|+|.+.. ..++...+.+. ...+.+.+.+++|+++++++++++.++|+++++.+++.++..+
T Consensus 15 ~~~t~d~~~i~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~ 92 (121)
T cd02106 15 EVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDL 92 (121)
T ss_pred eEEecCCCEEEEEEEEEEEEeCHH-HHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 368999999999999999997543 34444333333 5789999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023231 164 RDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (285)
Q Consensus 164 ~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 191 (285)
++||++|.+|.|.++++|+++.++++++
T Consensus 93 ~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 93 DKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.41 E-value=1.1e-11 Score=103.89 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=119.8
Q ss_pred hcceEEecCCceEEEEeeccceeeeeecCceeee-------------------cCCcceeEEEeeeeEE-eEeee----e
Q 023231 29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFL-------------------IPWLQKPFIFDIRTRP-HTFSS----V 84 (285)
Q Consensus 29 ~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~-------------------~P~~~~v~~~~~~~~~-~~~~~----~ 84 (285)
.+|-.+|++||.+|.+ +-|++.+ +.+||.|-. .||-..|+-++++... ..... .
T Consensus 13 ~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred CCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence 4677899999999998 8899876 999999954 2444456666666542 22211 1
Q ss_pred ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhC-C------ccccccccchHHHHHHHHHh--cCChhHHhhchHHHHHHH
Q 023231 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLG-L------EYDEKVLPSIGNEVLKAVVA--QFNADQLLTERPHVSALV 155 (285)
Q Consensus 85 ~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g-~------~~~~~~l~~~~~~~lr~~~~--~~~~~ei~~~R~~i~~~v 155 (285)
....+-..|.+.+...|.+...|+..|+.++- . +.....+++.+...+.+.++ +.++.|+-.+..+|++.+
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 22333335666665555555578999998863 2 22344566666666777776 479999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023231 156 RESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (285)
Q Consensus 156 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 191 (285)
++.+++.++.+|+++.++.|.+|++|++.++.|.++
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999864
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.77 E-value=3.2e-07 Score=77.98 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=114.8
Q ss_pred hcceEEecCCceEEEEeeccceeeeeecCceee-------------------ecCCcceeEEEeeeeEE-eEee----ee
Q 023231 29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHF-------------------LIPWLQKPFIFDIRTRP-HTFS----SV 84 (285)
Q Consensus 29 ~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~~----~~ 84 (285)
..|...|.|++-++.+ .-|++.+..-++|.|- ..|+-+.|+.++++.+. +... ..
T Consensus 38 nGs~l~Vrp~qmamfv-n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin 116 (345)
T COG4260 38 NGSILHVRPNQMAMFV-NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred cCcEEEEecCceEEEE-cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence 4677889999999986 6677766555688652 23455567777777665 3332 12
Q ss_pred ccC-CCceeEEEEEEEEEeeCCCCHhHHHHHhCC-------ccccccccchHHHHHHHHHhcC--ChhHHhhchHHHHHH
Q 023231 85 SGT-KDLQMVNLTLRVLSRPEVSRLPYIFQHLGL-------EYDEKVLPSIGNEVLKAVVAQF--NADQLLTERPHVSAL 154 (285)
Q Consensus 85 ~~t-kD~~~v~v~~~v~y~i~~~~~~~~~~~~g~-------~~~~~~l~~~~~~~lr~~~~~~--~~~ei~~~R~~i~~~ 154 (285)
... .++-.+.+...-.|.+...|+..++..+.. +..++.+-+.+-.++...+.++ ....+-.+.-+|+..
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~ 196 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY 196 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence 233 455555555555565555788888877642 2234455566667777777665 344455578899999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023231 155 VRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (285)
Q Consensus 155 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 191 (285)
+.+.|++.+..+|..|++|+|.+|++|++.++.|+.+
T Consensus 197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r 233 (345)
T COG4260 197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMR 233 (345)
T ss_pred HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999764
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.55 E-value=7.5e-06 Score=79.84 Aligned_cols=200 Identities=18% Similarity=0.097 Sum_probs=126.7
Q ss_pred EEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeee------E---EeEe---------eeeccCCCceeEE
Q 023231 33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRT------R---PHTF---------SSVSGTKDLQMVN 94 (285)
Q Consensus 33 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~------~---~~~~---------~~~~~tkD~~~v~ 94 (285)
+.||-+...-+|+.-.+..+.+.||-+++.-|- +.+..+++.. . .+.+ -..+-|+|...+.
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~ 543 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA 543 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence 567777777676544444567899999999886 5666555321 1 1111 1225799999999
Q ss_pred EEEEEEEeeC--CCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhch-HHHHHHHHHHHHH--------Hh
Q 023231 95 LTLRVLSRPE--VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER-PHVSALVRESLIK--------RA 163 (285)
Q Consensus 95 v~~~v~y~i~--~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R-~~i~~~v~~~l~~--------~l 163 (285)
+.++..|+.+ +.|....-.-|...+.-..+-..+.+-+|..+++.+.+++..+- .-|.+.++...++ .+
T Consensus 544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F 623 (850)
T PTZ00491 544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF 623 (850)
T ss_pred EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence 8888887775 34443222223344433446678889999999999999999854 4455555552222 23
Q ss_pred hcCCeEEEEEEEeeccCCH-HHHHHHHHH-------------HHHHHH----------------------HHHHHH----
Q 023231 164 RDFNIVLDDVAITHLSYGA-EFSRAVEQK-------------QVAQQE----------------------AERSKF---- 203 (285)
Q Consensus 164 ~~~Gi~v~~v~I~~i~~p~-~~~~ai~~~-------------~~a~qe----------------------ae~~~~---- 203 (285)
...|+.|++|.|.++.+-+ ..++++++- ..|+++ +|+++.
T Consensus 624 ~~N~lvit~VDvqsvEpvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~lle 703 (850)
T PTZ00491 624 PANNLVITNVDVQSVEPVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLE 703 (850)
T ss_pred ccCCeEEEEEeeeeeeecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHHH
Confidence 5779999999999998743 455555321 112222 222221
Q ss_pred -------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 023231 204 -------------VVMKADQERRAAIIRAEGESEAAQLISEAT 233 (285)
Q Consensus 204 -------------~i~~A~aea~~~~~~A~aea~a~~~~~~a~ 233 (285)
...+|++++++..++++++-+++++.++|+
T Consensus 704 l~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~ 746 (850)
T PTZ00491 704 LQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKAL 746 (850)
T ss_pred HHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHH
Confidence 245677777888888888877777766654
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=98.06 E-value=6.2e-05 Score=64.04 Aligned_cols=176 Identities=18% Similarity=0.285 Sum_probs=118.8
Q ss_pred EeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHH
Q 023231 72 FDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPH 150 (285)
Q Consensus 72 ~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~ 150 (285)
.++.+..++.|.. ...|||+.+.+.+.+..|-+. ..+ .|....++.+.+.-++.+..+-+.-+-.+++.+-+.
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaNi---~rL---VGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ 193 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRANI---DRL---VGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDS 193 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEecH---HHh---ccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHH
Confidence 3344555555554 478999999999988887643 333 466677777888888888888888899999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEEEEEEeeccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 023231 151 VSALVRESLIKRAR-DFNIVLDDVAITHLSYGAEFSRAV------EQKQVAQQEAERSKFVVMKADQERRAAIIRAE--- 220 (285)
Q Consensus 151 i~~~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~ai------~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~--- 220 (285)
|+..+.+. -|. ..-++|.|+.|-|++..+++-..+ .++..|+.+||..+++-...|+|-.+++.+.+
T Consensus 194 ISk~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkv 270 (316)
T PF12127_consen 194 ISKTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKV 270 (316)
T ss_pred HHHHHHhh---CCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 98877653 343 456899999999999999885555 34566777777666655555666555444433
Q ss_pred --hHHHHHHHHHHHhhccCc---cchHHHHHHHHHHHHHHh
Q 023231 221 --GESEAAQLISEATSKFGL---GLIELRRIEASREIAATL 256 (285)
Q Consensus 221 --aea~a~~~~~~a~~~~~p---~~~~~~~le~~~~~a~~l 256 (285)
+|++--+.+++|+.+.+- +|++++-+++=.+|=+++
T Consensus 271 VeAeaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si 311 (316)
T PF12127_consen 271 VEAEAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESI 311 (316)
T ss_pred eehhhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhc
Confidence 456666778888875422 244444444444443343
No 30
>PRK13665 hypothetical protein; Provisional
Probab=97.88 E-value=0.00016 Score=61.27 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=107.7
Q ss_pred EEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchH
Q 023231 71 IFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149 (285)
Q Consensus 71 ~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~ 149 (285)
..++.+..++.|.. ...|||+.+.+.+.+..|-+ ...+ .|..-.++.+-+.-++.+..+-+.-+-.+++.+-+
T Consensus 124 q~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~rL---VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd 197 (316)
T PRK13665 124 QMSVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDRL---VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPD 197 (316)
T ss_pred hcccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHHH---hCCCcceeeEeeecCceeecccCcchHHHHhcCHH
Confidence 33445555555554 47899999999998877753 3333 46667778888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHhh-cCCeEEEEEEEeeccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 023231 150 HVSALVRESLIKRAR-DFNIVLDDVAITHLSYGAEFSRAVE------QKQVAQQEAERSKFVVMKADQERRAAIIRAE-- 220 (285)
Q Consensus 150 ~i~~~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~ai~------~~~~a~qeae~~~~~i~~A~aea~~~~~~A~-- 220 (285)
.|+..+.+ +-|+ ..-++|.|+.|-|++..+++-..++ ++..|+.+||+.+++....|+|-.+++.+.+
T Consensus 198 ~ISk~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAk 274 (316)
T PRK13665 198 SISKTVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAK 274 (316)
T ss_pred HHHHHHHh---ccCCcCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99865543 4454 4468999999999999998865553 4556666666655554444555444433332
Q ss_pred ---hHHHHHHHHHHHhhcc
Q 023231 221 ---GESEAAQLISEATSKF 236 (285)
Q Consensus 221 ---aea~a~~~~~~a~~~~ 236 (285)
+|++--+.+++|+.+.
T Consensus 275 vVeAeaeVP~Ama~A~r~G 293 (316)
T PRK13665 275 VVEAEAEVPLAMAEALRSG 293 (316)
T ss_pred hhhhhhhchHHHHHHHHcC
Confidence 3455556677777653
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=96.73 E-value=0.078 Score=42.44 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=63.0
Q ss_pred ceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC
Q 023231 90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN 167 (285)
Q Consensus 90 ~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G 167 (285)
+....+.+.+.|++..+....-... =.+.+++.+...+++.+.+|+.+ .++++..++++.+|+.|..-+
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el~~---------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEELEE---------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHHHH---------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence 5566788888999975433322221 23688999999999999999998 599999999999999998876
Q ss_pred eEEEEEEEeecc
Q 023231 168 IVLDDVAITHLS 179 (285)
Q Consensus 168 i~v~~v~I~~i~ 179 (285)
.|.+|.++++.
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -eeEEEeeehhh
Confidence 88888887754
No 32
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.087 Score=43.88 Aligned_cols=162 Identities=19% Similarity=0.278 Sum_probs=97.5
Q ss_pred cCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhh-
Q 023231 86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR- 164 (285)
Q Consensus 86 ~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~- 164 (285)
..-||+.|.....+..|- +...+ .|....++.+.+.-++.+..+-++..-.+++.+-+.|++.+.+ +-|.
T Consensus 139 vam~gievkakaritvra---ni~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~ 209 (328)
T COG4864 139 VAMNGIEVKAKARITVRA---NIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS 209 (328)
T ss_pred eeccceEEEEEEEEEehh---hHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence 456777777766655543 22333 4556666666666666666667778888899998888876654 2332
Q ss_pred cCCeEEEEEEEeeccCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHh
Q 023231 165 DFNIVLDDVAITHLSYGAEFSR------AVEQKQVAQQEAERSKFVVMKADQERRAAIIRA-----EGESEAAQLISEAT 233 (285)
Q Consensus 165 ~~Gi~v~~v~I~~i~~p~~~~~------ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A-----~aea~a~~~~~~a~ 233 (285)
...+++.++.|-|++..+++-. +-.++..||..+++.+++...-|+|-.+++.+- ++|++.-..+++++
T Consensus 210 gtafeilsidiadvdigkniga~lqteqa~adk~iaqakaeerramava~eqemrarveemrakvveaeaevp~als~al 289 (328)
T COG4864 210 GTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEERRAMAVALEQEMRARVEEMRAKVVEAEAEVPLALSEAL 289 (328)
T ss_pred CceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3458999999999998887743 334556666666655544444444333333322 24455556677777
Q ss_pred hccC---ccchHHHHHHHHHHHHHHh
Q 023231 234 SKFG---LGLIELRRIEASREIAATL 256 (285)
Q Consensus 234 ~~~~---p~~~~~~~le~~~~~a~~l 256 (285)
.+.+ -+|++++.+++=..+-+++
T Consensus 290 r~gnigvmdy~n~~nv~adt~mr~si 315 (328)
T COG4864 290 REGNIGVMDYYNMKNVQADTAMRDSI 315 (328)
T ss_pred HhCCchhhhhhhhhcccccHHHHHHH
Confidence 7542 2344455555444444444
No 33
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=95.72 E-value=0.11 Score=45.37 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCeEEE--EEEEeeccCCH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023231 155 VRESLIKRARDFNIVLD--DVAITHLSYGA-EFSRAVEQKQVAQQEAER-SKFVVMKADQERRAAIIRAEGESEAAQLIS 230 (285)
Q Consensus 155 v~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~ai~~~~~a~qeae~-~~~~i~~A~aea~~~~~~A~aea~a~~~~~ 230 (285)
+.+.+.+.+++. +.-. .+.|.++.+-+ .+-..+.+...+.+.+++ ++..+.+|++++++.+.+|+|+|++..+.+
T Consensus 143 i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A 221 (266)
T cd03404 143 IAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA 221 (266)
T ss_pred HHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 444454455432 2222 68888887643 345556665555555544 445666778888888999999999999999
Q ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCC
Q 023231 231 EATSKFGLGLIELRRIEASREIAATLARSP 260 (285)
Q Consensus 231 ~a~~~~~p~~~~~~~le~~~~~a~~l~~~~ 260 (285)
+++++. ...-..-..+.+..+++++.+++
T Consensus 222 ~a~~~~-~~~~ae~~a~~~~~~~~a~~~~~ 250 (266)
T cd03404 222 EAYKEE-VIAEAQGEAARFESLLAEYKKAP 250 (266)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHhhCh
Confidence 998754 22222233444445555554433
No 34
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=95.55 E-value=0.08 Score=45.39 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCeEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 023231 154 LVRESLIKRARDFNIVLDDVAITHLSYGA-EFSRAVEQKQVAQQEAERSK-FVVMKADQERRAAIIRAEGESEAAQLISE 231 (285)
Q Consensus 154 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~ai~~~~~a~qeae~~~-~~i~~A~aea~~~~~~A~aea~a~~~~~~ 231 (285)
++.+.+.+.+.+. +.=..+.|.++.+.+ .+-+.+.+......++++.+ +...+|++++++..++|++++++..+.++
T Consensus 120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Ae 198 (242)
T cd03405 120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE 198 (242)
T ss_pred HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555433 333467777777632 23455666666666777654 56667788888888888888888888877
Q ss_pred HhhccCccchHH-HHHHHHHHHHHHhcCCC
Q 023231 232 ATSKFGLGLIEL-RRIEASREIAATLARSP 260 (285)
Q Consensus 232 a~~~~~p~~~~~-~~le~~~~~a~~l~~~~ 260 (285)
++++. ..++- -..++.+-.++++++++
T Consensus 199 a~a~a--~~~~a~gea~a~~~~~~a~~~~p 226 (242)
T cd03405 199 AYREA--QEIRGEGDAEAARIYAEAYGKDP 226 (242)
T ss_pred HHHHH--HHHHhhHHHHHHHHHHHHHcCCH
Confidence 77643 11111 12444444444554443
No 35
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=95.06 E-value=1.1 Score=36.51 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=54.8
Q ss_pred CCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCC
Q 023231 88 KDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFN 167 (285)
Q Consensus 88 kD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~G 167 (285)
.++..+.+.+++.|..+.. .+..++ + .=.+.+++.+...+++.+.+|+. .++++.+++++++|..|.+-
T Consensus 98 ~~~~r~~vki~l~~e~~d~---~l~~EL-----~-~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G- 166 (181)
T PRK06654 98 TPPKTFVVKLALGYAENNK---NILNEL-----G-RRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG- 166 (181)
T ss_pred CCCceEEEEEEEEEEcCCH---HHHHHH-----H-hccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC-
Confidence 3344445677777766432 222222 1 13468889999999999999999 89999999999999988864
Q ss_pred eEEEEEEEeec
Q 023231 168 IVLDDVAITHL 178 (285)
Q Consensus 168 i~v~~v~I~~i 178 (285)
.|.+|.++++
T Consensus 167 -kV~~VYFTeF 176 (181)
T PRK06654 167 -EIKDIAFTQI 176 (181)
T ss_pred -ceEEEEEEEE
Confidence 3555555544
No 36
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=94.45 E-value=0.67 Score=36.43 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023231 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (285)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 178 (285)
.+.+++.+-..+++.+.+|+-+ .|+++.+++.+.+|..+.+ | .|.+|.++++
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 3578889999999999999997 5999999999999999876 3 5777777764
No 37
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=94.42 E-value=1.9 Score=34.88 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023231 124 LPSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (285)
Q Consensus 124 l~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 178 (285)
-.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.+|..|.+- .|.+|.++++
T Consensus 109 ~~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 109 LMPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred hchHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 34678888888999999999987 59999999999999998763 3777777765
No 38
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=94.40 E-value=0.28 Score=44.22 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=59.0
Q ss_pred EEEEeeccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHHH
Q 023231 172 DVAITHLSYGA-EFSRAVEQKQVAQQEAERSK-FVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIEA 248 (285)
Q Consensus 172 ~v~I~~i~~p~-~~~~ai~~~~~a~qeae~~~-~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le~ 248 (285)
.+.|.++.+-+ .+-..+.+....++.+||.+ +...+|++++++..++++|+.++.++.++|+++. ..++= -..++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a--~i~~aegeA~a 279 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQG--RIMRGEGDAEA 279 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHhhhHHHH
Confidence 46777777633 35567777777778888764 4577899999999999999999999988887643 11221 23445
Q ss_pred HHHHHHHhcCCC
Q 023231 249 SREIAATLARSP 260 (285)
Q Consensus 249 ~~~~a~~l~~~~ 260 (285)
.+.+++++++++
T Consensus 280 ~~~~~~a~~~~p 291 (334)
T PRK11029 280 AKLFADAFSQDP 291 (334)
T ss_pred HHHHHHHHhcCH
Confidence 555555554443
No 39
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=94.37 E-value=0.31 Score=43.75 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHH-HHHHHHHHHHHHhcCCCC
Q 023231 188 VEQKQVAQQEAERS-KFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPH 261 (285)
Q Consensus 188 i~~~~~a~qeae~~-~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~-~~le~~~~~a~~l~~~~~ 261 (285)
+.+.......+++. .+...++++++++..+.|+|++++.+++++|+++. ..++- -..++.+.+++++++++.
T Consensus 209 v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a--~~~~Aegea~a~~~~~~a~~~~p~ 282 (317)
T TIGR01932 209 LSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTA--RIIKGEGDAEAAKIYSDAYGKDPE 282 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHccCHH
Confidence 33333444455543 45677788888999999999999999999988643 22221 234555555566655543
No 40
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=92.48 E-value=0.83 Score=39.73 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023231 155 VRESLIKRARDFNIVLDDVAITHLSYGA-EFSRAVEQKQVAQQEAERS-KFVVMKADQERRAAIIRAEGESEAAQLISEA 232 (285)
Q Consensus 155 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~ai~~~~~a~qeae~~-~~~i~~A~aea~~~~~~A~aea~a~~~~~~a 232 (285)
+...+.+.+.+. +.=-.+.|.++.+-+ ..-+.+.+.......|++. ++.+.+|++++.+.+.+|+|++++..+.+++
T Consensus 112 I~~~i~~~l~~~-l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg 190 (262)
T cd03407 112 IAKAVEEELREA-MSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVG 190 (262)
T ss_pred HHHHHHHHHHHH-HHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444432 333366677766532 2345556556666666654 4567788888889999999999999999998
Q ss_pred hhcc
Q 023231 233 TSKF 236 (285)
Q Consensus 233 ~~~~ 236 (285)
+++.
T Consensus 191 ~a~a 194 (262)
T cd03407 191 AAEQ 194 (262)
T ss_pred HHHH
Confidence 8744
No 41
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=91.22 E-value=1.6 Score=37.88 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCeEE--EEEEEeeccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023231 155 VRESLIKRARDFNIVL--DDVAITHLSYGA-EFSRAVEQKQVAQQEAERSK-FVVMKADQERRAAIIRAEGESEAAQLIS 230 (285)
Q Consensus 155 v~~~l~~~l~~~Gi~v--~~v~I~~i~~p~-~~~~ai~~~~~a~qeae~~~-~~i~~A~aea~~~~~~A~aea~a~~~~~ 230 (285)
+.+.+.+.++.. +.- ..+.|.++.+-+ ..-..+.+...+.+.+++.+ ..+.+|+++++..+.+|+|+|++..+.+
T Consensus 116 i~~~i~~~l~~~-~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~A 194 (261)
T TIGR01933 116 IREDTKERLNEI-IDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEA 194 (261)
T ss_pred HHHHHHHHHHHH-HhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 221 256777777644 23455555555555554433 3344555555555556666666666666
Q ss_pred HHhh
Q 023231 231 EATS 234 (285)
Q Consensus 231 ~a~~ 234 (285)
++++
T Consensus 195 ea~~ 198 (261)
T TIGR01933 195 RGYK 198 (261)
T ss_pred HHHH
Confidence 6554
No 42
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=90.90 E-value=1 Score=33.79 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=60.6
Q ss_pred ccCCCceeEEEEEEEEEeeCC--CCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHH-HHHHH-----
Q 023231 85 SGTKDLQMVNLTLRVLSRPEV--SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHV-SALVR----- 156 (285)
Q Consensus 85 ~~tkD~~~v~v~~~v~y~i~~--~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i-~~~v~----- 156 (285)
+-|+|-..+.+.++..|+.+. .+....-+-|...+.-..+-..+.+-+|..+++.+.+++..+-..| .+.+.
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 468999888888877777643 3333333334544433446677889999999999999999854433 33332
Q ss_pred HHHHH--HhhcCCeEEEEEEEeeccC
Q 023231 157 ESLIK--RARDFNIVLDDVAITHLSY 180 (285)
Q Consensus 157 ~~l~~--~l~~~Gi~v~~v~I~~i~~ 180 (285)
..+++ .+...|+.|++|.|+++.|
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCccceeEEcCCCeEEEEEeeeEecc
Confidence 11111 2356799999999999875
No 43
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.38 E-value=4.5 Score=38.72 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCcc-chHH--HHHHHHHHHHHHhc
Q 023231 203 FVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLG-LIEL--RRIEASREIAATLA 257 (285)
Q Consensus 203 ~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~-~~~~--~~le~~~~~a~~l~ 257 (285)
....++.+++++...++++||++.+.+++++...+.. .... ..++++..++++..
T Consensus 417 a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~~~~~~~ 474 (548)
T COG2268 417 AQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPEVAEEAA 474 (548)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566677777788888888889999988754233 1222 33677777666554
No 44
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=88.31 E-value=7.7 Score=27.93 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023231 124 LPSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (285)
Q Consensus 124 l~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 178 (285)
-.+.+++.+...+++++.+|+.+ .++.+.+++.+.+++.+.+- .|.+|.++++
T Consensus 42 ~~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 42 NMPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred ccHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 34678999999999999999996 69999999999999999643 3777777664
No 45
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=85.51 E-value=15 Score=28.59 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023231 126 SIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL 178 (285)
Q Consensus 126 ~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 178 (285)
+.+++.+-..+++.+.+|+.+ .|+++.+++.+.+|..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 778999999999999999987 69999999999999999743 2 25777777765
No 46
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.23 E-value=22 Score=29.19 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023231 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (285)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 178 (285)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.+|..+.+- .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 4678999999999999999997 59999999999999999763 4677777664
No 47
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.16 E-value=15 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC--eEEEEEEEeec
Q 023231 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN--IVLDDVAITHL 178 (285)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G--i~v~~v~I~~i 178 (285)
.+.+++.+-..+++.+.+|+.+ .++++.+++.+.++..+..-+ -.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3568888889999999999987 699999999999999997532 36777777765
No 48
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=83.85 E-value=5.3 Score=37.27 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCeEE--EEEEEeeccCCHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023231 154 LVRESLIKRARDFNIVL--DDVAITHLSYGAE-FSRAVEQKQVAQQEAE-RSKFVVMKADQERRAAIIRAEGESEAAQLI 229 (285)
Q Consensus 154 ~v~~~l~~~l~~~Gi~v--~~v~I~~i~~p~~-~~~ai~~~~~a~qeae-~~~~~i~~A~aea~~~~~~A~aea~a~~~~ 229 (285)
.+...+.+.+.+. +.= ..+.|.++.+-+- .-+.+.+.......|. ..++.+.+|+++++..+.+|+|+|+.....
T Consensus 211 ~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~ 289 (419)
T PRK10930 211 VIRSDTQRELEET-IRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEE 289 (419)
T ss_pred HHHHHHHHHHHHH-HhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666553 221 2577788776433 3344443333333332 334556677777777777777777777776
Q ss_pred HHHhhc
Q 023231 230 SEATSK 235 (285)
Q Consensus 230 ~~a~~~ 235 (285)
|+|+++
T Consensus 290 AeAyr~ 295 (419)
T PRK10930 290 ARAYKA 295 (419)
T ss_pred HHHHHH
Confidence 777763
No 49
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.51 E-value=22 Score=28.71 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023231 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL 178 (285)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 178 (285)
.+.+++.+-.++++.+.+|+.+ .++.+.+++.++++..+++. | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4678899999999999999987 59999999999998888653 3 25777777765
No 50
>PLN03086 PRLI-interacting factor K; Provisional
Probab=77.01 E-value=5.1 Score=38.73 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEecCC
Q 023231 244 RRIEASREIAATLARSPHVAYLPGG 268 (285)
Q Consensus 244 ~~le~~~~~a~~l~~~~~~~~~~~~ 268 (285)
+.+++... .+++..|+||++
T Consensus 80 ~~~~~~~~-----~~~GdKI~LPpS 99 (567)
T PLN03086 80 RIFEAVSF-----QGNGDKIKLPPS 99 (567)
T ss_pred EEeecccc-----CCCCCeEEcCHH
Confidence 55666554 146778888873
No 51
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=76.98 E-value=7.8 Score=32.31 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHH-hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023231 151 VSALVRESLIKR-ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQ 227 (285)
Q Consensus 151 i~~~v~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~ 227 (285)
+.+.+...+.+. +.=..+.|.++.+.+ .+-+.+.+.+.+++.++.+ +.+|++++++.++.|+|++++..
T Consensus 117 i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a~-------i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 117 LVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRAK-------IIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHcc
Confidence 333444444432 333467888888774 5667888888887777654 44567777777777777776654
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=70.53 E-value=28 Score=28.84 Aligned_cols=6 Identities=17% Similarity=-0.059 Sum_probs=2.7
Q ss_pred EEEecC
Q 023231 262 VAYLPG 267 (285)
Q Consensus 262 ~~~~~~ 267 (285)
.++++.
T Consensus 122 ~I~~~~ 127 (198)
T PRK01558 122 EIILNE 127 (198)
T ss_pred eEEECH
Confidence 344443
No 53
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=66.06 E-value=94 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=8.3
Q ss_pred CccchHHHHHHHHH
Q 023231 237 GLGLIELRRIEASR 250 (285)
Q Consensus 237 ~p~~~~~~~le~~~ 250 (285)
.|+||+++.++++.
T Consensus 259 ~~~~~~~~~~~~~~ 272 (280)
T cd03406 259 TPEYLELMKYEAIA 272 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 36666666665543
No 54
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=64.84 E-value=11 Score=26.52 Aligned_cols=25 Identities=8% Similarity=-0.041 Sum_probs=13.5
Q ss_pred chhhhhHHHhHHHHHHHHHHHHHHhhc
Q 023231 4 SQAAVSFLTNIARAAFGLGAAATVLNS 30 (285)
Q Consensus 4 ~~~~~~~m~~~~~~~~~l~~~~~~~~~ 30 (285)
+|-++ |.-++++++++++++++-.|
T Consensus 23 ~pn~l--MtILivLVIIiLlImlfqsS 47 (85)
T PF10717_consen 23 NPNTL--MTILIVLVIIILLIMLFQSS 47 (85)
T ss_pred ChhHH--HHHHHHHHHHHHHHHHHhcc
Confidence 44444 77666666555555554433
No 55
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=63.50 E-value=80 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHHHH-HhhcCCeEEEEEE----EeeccCCHHHHHHHHHHHH
Q 023231 156 RESLIK-RARDFNIVLDDVA----ITHLSYGAEFSRAVEQKQV 193 (285)
Q Consensus 156 ~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~~~~ai~~~~~ 193 (285)
.+.|++ .|...||.|.+-. +=....|+++.+..+++..
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~ 562 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEA 562 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHH
Confidence 456676 5888999998742 2233455666666665543
No 56
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=56.40 E-value=75 Score=26.56 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=52.6
Q ss_pred eeccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhc--hHHHHHHHHHHHH
Q 023231 83 SVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLI 160 (285)
Q Consensus 83 ~~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~v~~~l~ 160 (285)
..+.|+||..+.+-+.+.-.-. + .......|+....+.+...+++.+++|+... .+.+..++....+
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---a--------~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k 168 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---A--------RTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAK 168 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---h--------hhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhh
Confidence 3457999999888765432211 0 1223345888888889999999999999974 4666666666555
Q ss_pred HHhhcCCeEEEEEEEe
Q 023231 161 KRARDFNIVLDDVAIT 176 (285)
Q Consensus 161 ~~l~~~Gi~v~~v~I~ 176 (285)
.-.--..++|.-+.+.
T Consensus 169 ~IyPlr~veIrKvkvl 184 (203)
T PRK04057 169 KIYPLRRVEIRKSKVL 184 (203)
T ss_pred hccCcceEEEEEEEEE
Confidence 4433234455544443
No 57
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=54.51 E-value=35 Score=27.81 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=16.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhh
Q 023231 212 RRAAIIRAEGESEAAQLISEATS 234 (285)
Q Consensus 212 a~~~~~~A~aea~a~~~~~~a~~ 234 (285)
++..+.+|++||++..+.|++.+
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea 193 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEA 193 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 34457778888888877777655
No 58
>PHA03029 hypothetical protein; Provisional
Probab=53.63 E-value=19 Score=24.60 Aligned_cols=30 Identities=20% Similarity=-0.014 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHHHhhcceEEecCCc
Q 023231 10 FLTNIARAAFGLGAAATVLNSSLYTVDGGE 39 (285)
Q Consensus 10 ~m~~~~~~~~~l~~~~~~~~~~~~~V~~g~ 39 (285)
||+.+++++-+.+++.+.+++-|++.+|.-
T Consensus 55 flnf~fwllp~al~a~fyffsiw~imnpqa 84 (92)
T PHA03029 55 FLNFLFWLLPFALAAAFYFFSIWFIMNPQA 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheecccc
Confidence 688889988888888899999998887753
No 59
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.76 E-value=1.2e+02 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=8.2
Q ss_pred ChhHHhhch-HHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVR 156 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~ 156 (285)
++..++.+| +.|.+.+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (175)
T PRK14472 42 PILSALEEREKGIQSSID 59 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555544 34444443
No 60
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=51.57 E-value=89 Score=25.07 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.1
Q ss_pred ChhHHhhch-HHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVR 156 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~ 156 (285)
++.+++.+| +.|.+++.
T Consensus 46 Pi~~~l~~R~~~I~~~l~ 63 (167)
T PRK08475 46 PLKNFYKSRINKISKRLE 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555544 34444443
No 61
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=51.55 E-value=18 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhcc
Q 023231 10 FLTNIARAAFGLGAAATVLNSS 31 (285)
Q Consensus 10 ~m~~~~~~~~~l~~~~~~~~~~ 31 (285)
||.+.+.+++++++..+.+..|
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhh
Confidence 5777766666665555555444
No 62
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=50.13 E-value=51 Score=26.87 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.4
Q ss_pred EEEecC
Q 023231 262 VAYLPG 267 (285)
Q Consensus 262 ~~~~~~ 267 (285)
+++..+
T Consensus 118 ~i~~~~ 123 (188)
T PRK02292 118 RVYSRK 123 (188)
T ss_pred EEEEcc
Confidence 344443
No 63
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=49.03 E-value=63 Score=24.27 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhh
Q 023231 204 VVMKADQERRAAIIR--AEGESEAAQLISEATS 234 (285)
Q Consensus 204 ~i~~A~aea~~~~~~--A~aea~a~~~~~~a~~ 234 (285)
.+.+|+.+|+..+.. ++-|++-.+..++...
T Consensus 32 RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g 64 (113)
T TIGR01147 32 RLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLG 64 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555555555544 4444444555554444
No 64
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=48.89 E-value=1.4e+02 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=8.5
Q ss_pred ChhHHhhch-HHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVR 156 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~ 156 (285)
++..++.+| +.|.+++.
T Consensus 40 pi~~~l~~R~~~I~~~l~ 57 (173)
T PRK13460 40 VILKALDERASGVQNDIN 57 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566654 34444443
No 65
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=48.66 E-value=1.1e+02 Score=24.24 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=8.0
Q ss_pred ChhHHhhchH-HHHHHHH
Q 023231 140 NADQLLTERP-HVSALVR 156 (285)
Q Consensus 140 ~~~ei~~~R~-~i~~~v~ 156 (285)
++.+++.+|. .|..++.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555555443 3444443
No 66
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=47.82 E-value=74 Score=27.83 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=26.4
Q ss_pred hhcCCeEEEEEEEe-eccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHH
Q 023231 163 ARDFNIVLDDVAIT-HLSYGAEFSRAVEQKQVAQQEAERSK----FVVMKADQERRAAIIRAEGESEA 225 (285)
Q Consensus 163 l~~~Gi~v~~v~I~-~i~~p~~~~~ai~~~~~a~qeae~~~----~~i~~A~aea~~~~~~A~aea~a 225 (285)
..-..+++.++... ++.- .+.+.|...+..+.+..+++ ..+.+|++++++..+.|+|++++
T Consensus 159 i~V~~V~i~~i~~p~ev~~--a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 159 IKVVDVEIKDIDPPEEVQA--AMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA 224 (291)
T ss_pred cEEEEEEEeecCCCHHHHH--HHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33445666666655 2222 55555544333322222111 12234455555555555554433
No 67
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.94 E-value=1.2e+02 Score=23.78 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=3.3
Q ss_pred hhHHhhch
Q 023231 141 ADQLLTER 148 (285)
Q Consensus 141 ~~ei~~~R 148 (285)
+..++.+|
T Consensus 29 i~~~l~~R 36 (156)
T PRK05759 29 IMKALEER 36 (156)
T ss_pred HHHHHHHH
Confidence 34444433
No 68
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=46.53 E-value=1.9e+02 Score=24.90 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=9.1
Q ss_pred ChhHHhhch-HHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRE 157 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~ 157 (285)
++.+++.+| +.|.+.+.+
T Consensus 29 Pi~~~l~eR~~~I~~~l~~ 47 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQD 47 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455566654 345544443
No 69
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=45.78 E-value=1.9e+02 Score=24.71 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=9.7
Q ss_pred ChhHHhhch-HHHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRES 158 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~~ 158 (285)
++..++.+| +.|...+.+.
T Consensus 29 Pi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455556654 4455555433
No 70
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.58 E-value=1.2e+02 Score=24.34 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=9.9
Q ss_pred cCChhHHhhch-HHHHHHHH
Q 023231 138 QFNADQLLTER-PHVSALVR 156 (285)
Q Consensus 138 ~~~~~ei~~~R-~~i~~~v~ 156 (285)
..++..++.+| ..|.+++.
T Consensus 41 ~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 41 RGFLGKILEERREAILQALK 60 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33466666654 34554443
No 71
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=44.74 E-value=1.5e+02 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 023231 204 VVMKADQERRAAIIRAEGESEAA 226 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~aea~a~ 226 (285)
.+..|+.+++..+.+|+.+++..
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444
No 72
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=44.22 E-value=1.6e+02 Score=23.24 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=3.7
Q ss_pred hhHHhhch
Q 023231 141 ADQLLTER 148 (285)
Q Consensus 141 ~~ei~~~R 148 (285)
+..++..|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 44444543
No 73
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=43.74 E-value=1.8e+02 Score=23.65 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=9.0
Q ss_pred hhHHhhch-HHHHHHHHH
Q 023231 141 ADQLLTER-PHVSALVRE 157 (285)
Q Consensus 141 ~~ei~~~R-~~i~~~v~~ 157 (285)
+..++.+| +.|..++.+
T Consensus 52 v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 46666654 345544443
No 74
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=43.05 E-value=1.4e+02 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=8.6
Q ss_pred ChhHHhhch-HHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRE 157 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~ 157 (285)
++..++.+| +.|.+++.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455555554 344444443
No 75
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=42.70 E-value=1.7e+02 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=8.4
Q ss_pred hhHHhhch-HHHHHHHHH
Q 023231 141 ADQLLTER-PHVSALVRE 157 (285)
Q Consensus 141 ~~ei~~~R-~~i~~~v~~ 157 (285)
+..++.+| +.|.+++.+
T Consensus 35 i~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 35 LAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45555543 445555443
No 76
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.64 E-value=2.3e+02 Score=26.78 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=8.6
Q ss_pred hhHHhhch-HHHHHHHHH
Q 023231 141 ADQLLTER-PHVSALVRE 157 (285)
Q Consensus 141 ~~ei~~~R-~~i~~~v~~ 157 (285)
+..++.+| +.|.+++.+
T Consensus 26 i~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45555544 445555544
No 77
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.02 E-value=1.6e+02 Score=22.57 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=3.6
Q ss_pred hhHHhhch
Q 023231 141 ADQLLTER 148 (285)
Q Consensus 141 ~~ei~~~R 148 (285)
+.+++.+|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 44444443
No 78
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.87 E-value=1.9e+02 Score=23.49 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=11.8
Q ss_pred CChhHHhhch-HHHHHHHHHH
Q 023231 139 FNADQLLTER-PHVSALVRES 158 (285)
Q Consensus 139 ~~~~ei~~~R-~~i~~~v~~~ 158 (285)
-++..++.+| +.|.+.+.+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 5677777755 4555555443
No 79
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=41.45 E-value=2.1e+02 Score=23.93 Aligned_cols=8 Identities=0% Similarity=-0.404 Sum_probs=4.6
Q ss_pred ccchHHHH
Q 023231 238 LGLIELRR 245 (285)
Q Consensus 238 p~~~~~~~ 245 (285)
|++++-.-
T Consensus 108 ~~~l~~lI 115 (207)
T PRK01005 108 PEVSAKLI 115 (207)
T ss_pred HHHHHHHH
Confidence 66666433
No 80
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=1.7e+02 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 023231 202 KFVVMKADQERRAAIIRAEGESE 224 (285)
Q Consensus 202 ~~~i~~A~aea~~~~~~A~aea~ 224 (285)
+.+.+.|++|++....+|.+|++
T Consensus 206 ~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 206 KTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666666665555555555
No 81
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.90 E-value=1.5e+02 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=7.8
Q ss_pred ChhHHhhchH-HHHHHH
Q 023231 140 NADQLLTERP-HVSALV 155 (285)
Q Consensus 140 ~~~ei~~~R~-~i~~~v 155 (285)
++..++.+|. .|.+++
T Consensus 55 PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 55 RIGAVLAERQGTITNDL 71 (181)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 4555666543 344333
No 82
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.43 E-value=1.7e+02 Score=23.23 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=8.4
Q ss_pred ChhHHhhch-HHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRE 157 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~ 157 (285)
++..++.+| +.|.+++.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14471 32 PILGAVKEREDSIKNALAS 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 445555543 344444443
No 83
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=40.16 E-value=2.2e+02 Score=23.72 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=7.0
Q ss_pred hhHHhhch-HHHHHHHH
Q 023231 141 ADQLLTER-PHVSALVR 156 (285)
Q Consensus 141 ~~ei~~~R-~~i~~~v~ 156 (285)
+..++.+| +.|.+++.
T Consensus 73 i~~~L~~R~~~I~~~L~ 89 (205)
T PRK06231 73 TQRFLNKRKELIEAEIN 89 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444543 34444443
No 84
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.36 E-value=2.3e+02 Score=23.56 Aligned_cols=19 Identities=5% Similarity=0.228 Sum_probs=10.0
Q ss_pred ChhHHhhch-HHHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRES 158 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~~ 158 (285)
++..++.+| +.|.+++.+.
T Consensus 77 pI~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455566654 4555555443
No 85
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.33 E-value=2.1e+02 Score=22.99 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=8.8
Q ss_pred ChhHHhhch-HHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVR 156 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~ 156 (285)
++.+++.+| +.|.+++.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666654 34444443
No 86
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=34.89 E-value=2.4e+02 Score=23.48 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 023231 184 FSRAVEQ 190 (285)
Q Consensus 184 ~~~ai~~ 190 (285)
+.+.+++
T Consensus 73 i~~~L~~ 79 (205)
T PRK06231 73 TQRFLNK 79 (205)
T ss_pred HHHHHHH
Confidence 4444433
No 87
>PRK15322 invasion protein OrgB; Provisional
Probab=34.84 E-value=1.4e+02 Score=24.86 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=3.9
Q ss_pred EEEecCC
Q 023231 262 VAYLPGG 268 (285)
Q Consensus 262 ~~~~~~~ 268 (285)
-+++|.+
T Consensus 114 ~l~lP~~ 120 (210)
T PRK15322 114 FLTLPVN 120 (210)
T ss_pred eEecChh
Confidence 3666653
No 88
>COG5510 Predicted small secreted protein [Function unknown]
Probab=33.14 E-value=48 Score=20.21 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHhhcc
Q 023231 10 FLTNIARAAFGLGAAATVLNSS 31 (285)
Q Consensus 10 ~m~~~~~~~~~l~~~~~~~~~~ 31 (285)
+|.+.+++.+++++.-+++.+|
T Consensus 1 mmk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHh
Confidence 4666555565666566666665
No 89
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.96 E-value=46 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.003 Sum_probs=19.1
Q ss_pred CcchhhhhHHHhHHHHHHHHHHHHHHhhc
Q 023231 2 GSSQAAVSFLTNIARAAFGLGAAATVLNS 30 (285)
Q Consensus 2 ~~~~~~~~~m~~~~~~~~~l~~~~~~~~~ 30 (285)
-+.++.|+|...+++++++.+++.+++.+
T Consensus 4 ~~~qrGFTLiElLVvl~Iigil~~~~~p~ 32 (149)
T COG2165 4 MKKQRGFTLIELLVVLAIIGILAALALPS 32 (149)
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999877666655554444433
No 90
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=32.75 E-value=4.1 Score=29.69 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=6.7
Q ss_pred HHhHHHHHHHHHHHHHHhhcceEEecCCceEEEEeecc
Q 023231 11 LTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFR 48 (285)
Q Consensus 11 m~~~~~~~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G 48 (285)
++-++|+.+++++.++...-+....+||.-.++| |..
T Consensus 55 FnIiLW~~v~l~~all~i~~~m~~mDPGrDSIIY-Rmt 91 (98)
T PF07850_consen 55 FNIILWFSVVLALALLAICYAMWNMDPGRDSIIY-RMT 91 (98)
T ss_dssp ---------------------------TTTSGGG-S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecCCCCceEEE-Eec
Confidence 5556777777777777666666789999988886 654
No 91
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=32.66 E-value=80 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHHH----hcCCCCEEEecCCC
Q 023231 245 RIEASREIAAT----LARSPHVAYLPGGK 269 (285)
Q Consensus 245 ~le~~~~~a~~----l~~~~~~~~~~~~~ 269 (285)
-||++..++.. |++.+++.++++|+
T Consensus 357 lLealp~Ia~~ia~plaktnkI~v~s~g~ 385 (428)
T KOG2668|consen 357 LLEALPMIAAEIAAPLAKTNKISVWSHGG 385 (428)
T ss_pred HHHHHHHHHHHhccchhhcCeEEEEecCC
Confidence 47888877554 44556677777664
No 92
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=32.23 E-value=47 Score=19.48 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhcceE
Q 023231 15 ARAAFGLGAAATVLNSSLY 33 (285)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~ 33 (285)
.-++++++.++.+++++++
T Consensus 19 Ly~GlLlifvl~vLFssYf 37 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455566666777777764
No 93
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=32.19 E-value=77 Score=23.11 Aligned_cols=8 Identities=25% Similarity=0.381 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 023231 207 KADQERRA 214 (285)
Q Consensus 207 ~A~aea~~ 214 (285)
.|+.+++.
T Consensus 33 ~Ak~eA~~ 40 (105)
T PF03179_consen 33 QAKEEAEK 40 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=31.23 E-value=2.6e+02 Score=21.96 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHH
Q 023231 180 YGAEFSRAVEQK 191 (285)
Q Consensus 180 ~p~~~~~ai~~~ 191 (285)
+|..+...|+++
T Consensus 23 ~~~pi~~~l~~R 34 (159)
T PRK09173 23 VPGMIARSLDAR 34 (159)
T ss_pred hHHHHHHHHHHH
Confidence 345555555443
No 95
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=30.71 E-value=66 Score=17.11 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=11.7
Q ss_pred hhhhhHHHhHHHHHHHHHH
Q 023231 5 QAAVSFLTNIARAAFGLGA 23 (285)
Q Consensus 5 ~~~~~~m~~~~~~~~~l~~ 23 (285)
++.|+++.-++.++++.++
T Consensus 1 ~~GfTLiEllial~i~~i~ 19 (26)
T TIGR02532 1 QRGFTLIELLVVLAILGIL 19 (26)
T ss_pred CCceeHHHHHHHHHHHHHH
Confidence 4678888876555544443
No 96
>PTZ00491 major vault protein; Provisional
Probab=30.11 E-value=2.1e+02 Score=29.33 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=14.6
Q ss_pred EEecCCCCCce-eecCCcccCCC
Q 023231 263 AYLPGGKNSNM-LLALNPALTGG 284 (285)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~~ 284 (285)
=|+-++|.+|+ ++|-...+.||
T Consensus 824 ~~litDG~sPiNLf~ta~gl~g~ 846 (850)
T PTZ00491 824 GYLVTDGKSPINLFNTANGLIGG 846 (850)
T ss_pred eEEeecCCCchhHHhhhhhhhcC
Confidence 35555666777 77777777765
No 97
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=29.84 E-value=1.6e+02 Score=24.22 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023231 202 KFVVMKADQERRAAII 217 (285)
Q Consensus 202 ~~~i~~A~aea~~~~~ 217 (285)
+..+..|+.++++.+.
T Consensus 44 ~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 44 EQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555444
No 98
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=28.88 E-value=3e+02 Score=21.88 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023231 182 AEFSRAVEQKQVAQQ----EAERSKFVVMKADQERRAAIIRAEGESEAAQLISEA 232 (285)
Q Consensus 182 ~~~~~ai~~~~~a~q----eae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a 232 (285)
+.+...++.+..--+ +|++.+.+.....++.+.++.+|+ .++..++.+|
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar--~~a~~Ii~~A 81 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR--EQASEIIEQA 81 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
No 99
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=28.20 E-value=30 Score=20.18 Aligned_cols=17 Identities=29% Similarity=-0.035 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhcce
Q 023231 16 RAAFGLGAAATVLNSSL 32 (285)
Q Consensus 16 ~~~~~l~~~~~~~~~~~ 32 (285)
-++++++.++.++++++
T Consensus 18 Y~GLllifvl~vLFssy 34 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34455555666666654
No 100
>PRK10557 hypothetical protein; Provisional
Probab=27.61 E-value=66 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=16.9
Q ss_pred CCcchhhhhHHHhHHHHHHHHHH
Q 023231 1 MGSSQAAVSFLTNIARAAFGLGA 23 (285)
Q Consensus 1 ~~~~~~~~~~m~~~~~~~~~l~~ 23 (285)
|.++++.|+|+..++.+++.+++
T Consensus 2 ~~~~q~GfSLiElmIAm~Ig~il 24 (192)
T PRK10557 2 MPVKQRGFSLLEVLLAMAIGSVL 24 (192)
T ss_pred CccccCCcCHHHHHHHHHHHHHH
Confidence 67889999999976665554443
No 101
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=27.48 E-value=72 Score=17.78 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=6.5
Q ss_pred cchhhhhHHHhHHHHHHH
Q 023231 3 SSQAAVSFLTNIARAAFG 20 (285)
Q Consensus 3 ~~~~~~~~m~~~~~~~~~ 20 (285)
..++.|++..-+..++++
T Consensus 11 ~~~~GFTLiEllVa~~I~ 28 (31)
T PF13544_consen 11 RRQRGFTLIELLVAMAIL 28 (31)
T ss_dssp -------HHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHH
Confidence 457889888865444433
No 102
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=27.41 E-value=2e+02 Score=23.87 Aligned_cols=65 Identities=9% Similarity=0.096 Sum_probs=41.8
Q ss_pred eccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhc--hHHHHHHHHHHH
Q 023231 84 VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESL 159 (285)
Q Consensus 84 ~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~v~~~l 159 (285)
.+.|+||..+.+-+... ..... .......++......+.+.+++.+++++... -+.+..++....
T Consensus 107 dvkT~DGy~lRvf~i~f-T~~ra----------~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~ 173 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAF-TKKRA----------KSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKAC 173 (194)
T ss_dssp EEEETTTEEEEEEEEEE-E--------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHH
T ss_pred EEEcCCCcEEEEEEEEE-Eeecc----------cchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHh
Confidence 35799999888765432 11111 1222345788888888999999999999974 455555555543
No 103
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.09 E-value=3.1e+02 Score=26.39 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHhcCChhHHhhc
Q 023231 130 EVLKAVVAQFNADQLLTE 147 (285)
Q Consensus 130 ~~lr~~~~~~~~~ei~~~ 147 (285)
..+|+++......+++..
T Consensus 478 ~~vRe~a~~~~~~~iL~l 495 (586)
T KOG2007|consen 478 EKVREVAREKKVPEILEL 495 (586)
T ss_pred HHHHHHHHhcchHHHHHH
Confidence 344444443333344443
No 104
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=26.01 E-value=54 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHH
Q 023231 153 ALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE 189 (285)
Q Consensus 153 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~ 189 (285)
-++++.+.+.|.+.|.+|.++.-.+.++|+ +...+.
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~va 47 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAVA 47 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHHH
Confidence 467888888999999999998865555554 444443
No 105
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=25.32 E-value=3.8e+02 Score=21.98 Aligned_cols=6 Identities=0% Similarity=-0.396 Sum_probs=2.6
Q ss_pred EEEecC
Q 023231 262 VAYLPG 267 (285)
Q Consensus 262 ~~~~~~ 267 (285)
++++-|
T Consensus 134 tL~~hP 139 (191)
T PF06188_consen 134 TLRCHP 139 (191)
T ss_pred EEEECH
Confidence 444443
No 106
>PRK09098 type III secretion system protein HrpB; Validated
Probab=25.00 E-value=3.1e+02 Score=23.37 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHHHHHHHHHH
Q 023231 197 EAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASRE 251 (285)
Q Consensus 197 eae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~~~le~~~~ 251 (285)
.+-.++..-..++|..+++.+-++++++|.+++.+|-.+. .+..+.-|-|-+.+
T Consensus 35 ~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~-e~~~~~Gy~eG~~~ 88 (233)
T PRK09098 35 AAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREA-DRSARRGYAAGLRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
No 107
>CHL00038 psbL photosystem II protein L
Probab=24.85 E-value=76 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.037 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhcceE
Q 023231 16 RAAFGLGAAATVLNSSLY 33 (285)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~ 33 (285)
-++++++.++.+++++++
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555556666666653
No 108
>PRK14756 hypothetical protein; Provisional
Probab=24.57 E-value=1.3e+02 Score=16.41 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=9.5
Q ss_pred hhhHHHhHHHHHHHHHH
Q 023231 7 AVSFLTNIARAAFGLGA 23 (285)
Q Consensus 7 ~~~~m~~~~~~~~~l~~ 23 (285)
-||+|..+..+++++..
T Consensus 6 K~SL~tTvvaL~~Iva~ 22 (29)
T PRK14756 6 KFSLVTTIIVLGLIVAV 22 (29)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777766555544443
No 109
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=23.75 E-value=48 Score=19.78 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=9.5
Q ss_pred hHHHhHHHHHHHHHHHHHH
Q 023231 9 SFLTNIARAAFGLGAAATV 27 (285)
Q Consensus 9 ~~m~~~~~~~~~l~~~~~~ 27 (285)
.|||.+..-++.+.++..+
T Consensus 10 ~lmN~ll~Gava~~a~~~l 28 (39)
T PF08802_consen 10 QLMNLLLGGAVAVPAGGML 28 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 4588654444444444333
No 110
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.47 E-value=3.7e+02 Score=20.77 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=10.2
Q ss_pred ChhHHhhch-HHHHHHHHHH
Q 023231 140 NADQLLTER-PHVSALVRES 158 (285)
Q Consensus 140 ~~~ei~~~R-~~i~~~v~~~ 158 (285)
++..++.+| +.|.+++...
T Consensus 31 Pi~~~l~~R~~~I~~~l~~A 50 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEKV 50 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455555654 4566655443
No 111
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.29 E-value=4e+02 Score=21.14 Aligned_cols=9 Identities=0% Similarity=0.158 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 023231 182 AEFSRAVEQ 190 (285)
Q Consensus 182 ~~~~~ai~~ 190 (285)
+.+...+++
T Consensus 27 kPI~~~Lee 35 (154)
T PRK06568 27 KAILNSLDA 35 (154)
T ss_pred HHHHHHHHH
Confidence 334444433
No 112
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.94 E-value=88 Score=26.44 Aligned_cols=17 Identities=12% Similarity=-0.205 Sum_probs=8.4
Q ss_pred hhhHHHhHHHHHHHHHH
Q 023231 7 AVSFLTNIARAAFGLGA 23 (285)
Q Consensus 7 ~~~~m~~~~~~~~~l~~ 23 (285)
+=.+|+.++.++++|++
T Consensus 12 ~N~iLNiaI~IV~lLIi 28 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLII 28 (217)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 33456655555544443
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.82 E-value=4.2e+02 Score=27.09 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=4.7
Q ss_pred eEEecCCceEE
Q 023231 32 LYTVDGGERAV 42 (285)
Q Consensus 32 ~~~V~~g~~gV 42 (285)
+.+++++.+--
T Consensus 95 ll~~~~~~~p~ 105 (1118)
T KOG1029|consen 95 LLKQPPRNAPS 105 (1118)
T ss_pred HhccCCcCCCC
Confidence 34444444433
No 114
>PRK14762 membrane protein; Provisional
Probab=21.28 E-value=55 Score=17.37 Aligned_cols=12 Identities=17% Similarity=-0.139 Sum_probs=5.0
Q ss_pred HhHHHHHHHHHH
Q 023231 12 TNIARAAFGLGA 23 (285)
Q Consensus 12 ~~~~~~~~~l~~ 23 (285)
+-+.|++.++.+
T Consensus 2 ki~lw~i~iifl 13 (27)
T PRK14762 2 KIILWAVLIIFL 13 (27)
T ss_pred eeHHHHHHHHHH
Confidence 334454444333
No 115
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=20.98 E-value=1.1e+02 Score=15.32 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=8.0
Q ss_pred hhhhHHHhHHHHHH
Q 023231 6 AAVSFLTNIARAAF 19 (285)
Q Consensus 6 ~~~~~m~~~~~~~~ 19 (285)
+.|+++..+..+++
T Consensus 1 ~GFTLiE~~v~l~i 14 (20)
T PF07963_consen 1 KGFTLIELLVALAI 14 (20)
T ss_pred CceeHHHHHHHHHH
Confidence 35777776544443
No 116
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.20 E-value=5e+02 Score=21.43 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=0.0
Q ss_pred HHHHHhhcCCeEEEEEEEe
Q 023231 158 SLIKRARDFNIVLDDVAIT 176 (285)
Q Consensus 158 ~l~~~l~~~Gi~v~~v~I~ 176 (285)
.+...|+.||+.|.-+-|.
T Consensus 28 tv~~~L~~yGWyil~~~I~ 46 (190)
T PF06936_consen 28 TVGSFLSSYGWYILFGCIL 46 (190)
T ss_dssp -------------------
T ss_pred HHHHHHHHhCHHHHHHHHH
Confidence 3445677777766555444
Done!