Query 023231
Match_columns 285
No_of_seqs 179 out of 1418
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 1.1E-28 3.8E-33 203.5 16.0 172 65-255 2-177 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 4.8E-24 1.6E-28 165.8 11.6 129 61-193 3-132 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 8.6E-22 2.9E-26 154.9 4.8 130 65-194 3-138 (143)
4 2rpb_A Hypothetical membrane p 99.7 2E-18 6.7E-23 130.3 5.0 109 71-183 4-113 (113)
5 2zuo_A MVP, major vault protei 98.7 1.2E-06 4.1E-11 84.0 20.2 156 32-188 459-654 (861)
6 2b5u_A Colicin E3; high resolu 77.8 11 0.00037 34.4 8.8 34 165-198 277-310 (551)
7 3v6i_B V-type ATP synthase, su 65.9 27 0.00091 24.5 6.7 17 204-220 32-48 (105)
8 2zuo_A MVP, major vault protei 47.6 78 0.0027 30.9 8.8 41 33-76 487-533 (861)
9 2kk7_A V-type ATP synthase sub 47.0 46 0.0016 20.2 6.6 21 204-224 26-46 (52)
10 3v6i_B V-type ATP synthase, su 45.7 75 0.0026 22.3 7.1 23 204-226 21-43 (105)
11 2k6i_A Uncharacterized protein 45.4 37 0.0013 21.1 4.2 20 204-223 31-50 (56)
12 3v6i_A V-type ATP synthase sub 43.9 50 0.0017 25.7 6.1 10 259-268 116-125 (187)
13 4efa_G V-type proton ATPase su 42.5 55 0.0019 23.7 5.5 22 204-225 36-57 (119)
14 2k6i_A Uncharacterized protein 39.8 42 0.0014 20.8 3.8 26 206-233 22-47 (56)
15 2xzm_4 40S ribosomal protein S 34.3 63 0.0022 26.9 5.3 88 83-177 128-220 (265)
16 3j20_A 30S ribosomal protein S 33.7 1.8E+02 0.0061 23.1 9.0 69 83-162 107-177 (198)
17 2acm_B Mucin-1; auto-catalytic 30.3 69 0.0024 19.7 3.7 21 163-183 32-52 (55)
18 3iox_A AGI/II, PA; alpha helix 25.4 3.9E+02 0.013 24.3 9.3 6 189-194 19-24 (497)
19 1q90_R Cytochrome B6-F complex 25.1 30 0.001 20.9 1.3 32 9-40 13-44 (49)
20 3arc_L Photosystem II reaction 24.5 29 0.001 19.3 1.1 17 16-32 18-34 (37)
21 4efa_E V-type proton ATPase su 23.8 2.8E+02 0.0095 22.1 7.8 9 181-189 10-18 (233)
22 3bk6_A PH stomatin; archaea, t 22.4 2.1E+02 0.0073 21.8 6.4 64 150-221 88-152 (188)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.1e-28 Score=203.51 Aligned_cols=172 Identities=24% Similarity=0.304 Sum_probs=145.8
Q ss_pred CcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhH
Q 023231 65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQ 143 (285)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~e 143 (285)
|++++.++|++.++++++.+ +.|+|+++|.+++.++|||. ++..++.+ ..++...+.+.+++.+|+++++++++|
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 56899999999999999885 79999999999999999995 45555543 344556788999999999999999999
Q ss_pred HhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023231 144 LLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGES 223 (285)
Q Consensus 144 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea 223 (285)
++++|++|+..+++.+++.+.+|||+|.+|.|++++||+++.++|++++ +|+.++++++++|+|++
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER 143 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999998753 35566778889999999
Q ss_pred HHHHHHHHHhh---ccCccchHHHHHHHHHHHHHH
Q 023231 224 EAAQLISEATS---KFGLGLIELRRIEASREIAAT 255 (285)
Q Consensus 224 ~a~~~~~~a~~---~~~p~~~~~~~le~~~~~a~~ 255 (285)
+|++++++|.. .+ |.++++|++|++.+++.+
T Consensus 144 ~a~~~~a~a~~~~~~~-~~~l~lr~le~~~~ia~~ 177 (188)
T 3bk6_A 144 QAAEKLREAAEIISEH-PMALQLRTLQTISDVAGD 177 (188)
T ss_dssp HHHHHHHHHHHHHHHC-TTHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHhcC
Confidence 99999888753 45 999999999999998875
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.91 E-value=4.8e-24 Score=165.78 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=101.2
Q ss_pred eecCCcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcC
Q 023231 61 FLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQF 139 (285)
Q Consensus 61 ~~~P~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~ 139 (285)
+..||++++.++|+|.++++++.+ +.|+|+..+.+++.++||| .|+.+++. +.++.+..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI--~Dp~~~~~--~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVA--NITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEE--SCHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEE--eehHHhHh--hhhhHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999999887 7999999999999999999 46777664 456777889999999999999999
Q ss_pred ChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHH
Q 023231 140 NADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQV 193 (285)
Q Consensus 140 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~ 193 (285)
++++++++|++|..++++.+++.+++|||+|.+|.|++++||+++.++|.++++
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~ 132 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAE 132 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999987544
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.84 E-value=8.6e-22 Score=154.93 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=113.1
Q ss_pred CcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeC--CCCHhHHHHHh-CC--ccccccccchHHHHHHHHHhc
Q 023231 65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPE--VSRLPYIFQHL-GL--EYDEKVLPSIGNEVLKAVVAQ 138 (285)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~--~~~~~~~~~~~-g~--~~~~~~l~~~~~~~lr~~~~~ 138 (285)
|++++.++|+|.++++++.+ +.|+|++++.+|+.++|||. |..+.....+| |. +..+..+.+.+++.+|+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999987 69999999999999999995 34433434444 32 335567888999999999999
Q ss_pred CChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023231 139 FNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVA 194 (285)
Q Consensus 139 ~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a 194 (285)
++++|++++|++|.+++.+.+++.+.+|||+|.+|.|++|++|+++.++|++++.|
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~A 138 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS 138 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999875443
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.73 E-value=2e-18 Score=130.34 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=97.4
Q ss_pred EEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchH
Q 023231 71 IFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149 (285)
Q Consensus 71 ~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~ 149 (285)
++|+|.++++++.+ +.|+|+.++.+++.++|||. ++.+++.++ ...+..+.+.+++++|+++++++++|++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~--dp~~~~~~v--~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~ 79 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAVYNV--SDFLMAIVKLAQTNLRAIIGEMELDETLSGRD 79 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEES--CTTTCTTTT--THHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEEC--CHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence 57899999999875 79999999999999999995 445555544 34556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHH
Q 023231 150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAE 183 (285)
Q Consensus 150 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 183 (285)
+|++++++.+++.+++|||+|.+|.|++++||++
T Consensus 80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.73 E-value=1.2e-06 Score=84.02 Aligned_cols=156 Identities=12% Similarity=-0.005 Sum_probs=101.9
Q ss_pred eEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeee------eE------------EeEeeeeccCCCceeE
Q 023231 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIR------TR------------PHTFSSVSGTKDLQMV 93 (285)
Q Consensus 32 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~------~~------------~~~~~~~~~tkD~~~v 93 (285)
.+.||.+.+.-+|+.--+..+.++||-+++.-|- +.+..+++. .. -+.--..+-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 3678988888888533333567899999887774 444433321 11 1111233589999999
Q ss_pred EEEEEEEEeeC---CCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHH-HHHHHHH-----------
Q 023231 94 NLTLRVLSRPE---VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHV-SALVRES----------- 158 (285)
Q Consensus 94 ~v~~~v~y~i~---~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i-~~~v~~~----------- 158 (285)
.+.++..|+.+ +.+....-+-|...+.-..+-..+.+.+|..+++.+.+++..+-.+| ...++-.
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence 99998888884 34445444445554443446678889999999999999999865544 2222211
Q ss_pred ----HH--HHhhcCCeEEEEEEEeeccCCHH-HHHHH
Q 023231 159 ----LI--KRARDFNIVLDDVAITHLSYGAE-FSRAV 188 (285)
Q Consensus 159 ----l~--~~l~~~Gi~v~~v~I~~i~~p~~-~~~ai 188 (285)
.+ -.+...|+.|++|.|.++.+-++ .++++
T Consensus 618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence 11 12457799999999999987443 55555
No 6
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=77.79 E-value=11 Score=34.35 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=29.6
Q ss_pred cCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Q 023231 165 DFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEA 198 (285)
Q Consensus 165 ~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qea 198 (285)
.-|++-..|.+.+|-.|.++.+..++..+++||.
T Consensus 277 ~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 277 DSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999998888888766
No 7
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=65.93 E-value=27 Score=24.54 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023231 204 VVMKADQERRAAIIRAE 220 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~ 220 (285)
.+..|++++.+.+.+|+
T Consensus 32 ~v~~AEAeA~ril~eAe 48 (105)
T 3v6i_B 32 RVKRAEAEAKALLEEAE 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=47.59 E-value=78 Score=30.94 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=20.8
Q ss_pred EEecCCceEEEEeeccceeeeeecCc-----eeeecC-CcceeEEEeeee
Q 023231 33 YTVDGGERAVLFDRFRGVIDETIGEG-----THFLIP-WLQKPFIFDIRT 76 (285)
Q Consensus 33 ~~V~~g~~gVv~~~~G~~~~~~~~pG-----~~~~~P-~~~~v~~~~~~~ 76 (285)
+..+|.|.-.+.+--|| .+..|+ -.+..| |+..++.+.++.
T Consensus 487 v~L~PdE~ftvlsLSgg---~PK~~~~i~sl~L~lGPdf~tD~i~vET~D 533 (861)
T 2zuo_A 487 VTLDPEEQFTVLSLSAG---RPKRPHARRALCLLLGPDFFTDVITIETAD 533 (861)
T ss_dssp EECCSSCEECCEEECCS---SSCCTTSEEESSEECSSCEEEEEEEEECTT
T ss_pred EEECCCccEEEEEecCC---CCCCCCceEEEEeeeCCccceEEEEEEEcC
Confidence 55666676666533333 123344 123446 556666666554
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=46.96 E-value=46 Score=20.19 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 023231 204 VVMKADQERRAAIIRAEGESE 224 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~aea~ 224 (285)
.+..|+++++.-+.+|+.+|+
T Consensus 26 Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 26 IISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655554
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=45.68 E-value=75 Score=22.25 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 023231 204 VVMKADQERRAAIIRAEGESEAA 226 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~aea~a~ 226 (285)
.++.|+.++.+.+.+|+++|.+.
T Consensus 21 ~lE~Ar~eA~~~v~~AEAeA~ri 43 (105)
T 3v6i_B 21 RLEAAKKEAEERVKRAEAEAKAL 43 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555554443
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=45.44 E-value=37 Score=21.13 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 023231 204 VVMKADQERRAAIIRAEGES 223 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~aea 223 (285)
.+..|+.+++..+..|+.+|
T Consensus 31 iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 31 EIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444
No 12
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=43.87 E-value=50 Score=25.73 Aligned_cols=10 Identities=0% Similarity=-0.177 Sum_probs=4.8
Q ss_pred CCCEEEecCC
Q 023231 259 SPHVAYLPGG 268 (285)
Q Consensus 259 ~~~~~~~~~~ 268 (285)
.+.++++.+.
T Consensus 116 ~~~~vv~~~~ 125 (187)
T 3v6i_A 116 GAKALVANPE 125 (187)
T ss_dssp TCCEEEECTT
T ss_pred CCCeEEECHH
Confidence 3445555443
No 13
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=42.49 E-value=55 Score=23.75 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 023231 204 VVMKADQERRAAIIRAEGESEA 225 (285)
Q Consensus 204 ~i~~A~aea~~~~~~A~aea~a 225 (285)
.+..|+.+|++.+..-+.+.+.
T Consensus 36 rLKqAK~EA~~EIe~yR~qkE~ 57 (119)
T 4efa_G 36 KLKQAKTDAAKEIDSYKIQKDK 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443333
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=39.84 E-value=42 Score=20.84 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 023231 206 MKADQERRAAIIRAEGESEAAQLISEAT 233 (285)
Q Consensus 206 ~~A~aea~~~~~~A~aea~a~~~~~~a~ 233 (285)
..|+.+|+..+.+|+.+ +.+++.+|-
T Consensus 22 KeAE~~A~~iVeeA~~e--a~~ii~eAr 47 (56)
T 2k6i_A 22 KLAEEQAVKEIEEAKNR--AEQIKAEAI 47 (56)
T ss_dssp CHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34556555555554444 445554443
No 15
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=34.32 E-value=63 Score=26.92 Aligned_cols=88 Identities=7% Similarity=0.103 Sum_probs=49.5
Q ss_pred eeccCCCceeEEEEEEEEEeeCC---CCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhc--hHHHHHHHHH
Q 023231 83 SVSGTKDLQMVNLTLRVLSRPEV---SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRE 157 (285)
Q Consensus 83 ~~~~tkD~~~v~v~~~v~y~i~~---~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~v~~ 157 (285)
..+.|+||..+.+-+...-.-.+ ...... .|........|+......+...+++.++.|+... -+.+..++..
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt--~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k 205 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTST--CYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEK 205 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCC--BCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEeccccccccccee--eeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHH
Confidence 34679999999987654333222 111110 0111122335777778888888899999999974 4445555444
Q ss_pred HHHHHhhcCCeEEEEEEEee
Q 023231 158 SLIKRARDFNIVLDDVAITH 177 (285)
Q Consensus 158 ~l~~~l~~~Gi~v~~v~I~~ 177 (285)
.+... .-+.+|.|+.
T Consensus 206 ----~~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 206 ----ETKNI-FPLQNITIRK 220 (265)
T ss_dssp ----HHTTT-CCEEEEEEEE
T ss_pred ----Hhhhc-cccceEEEEE
Confidence 44432 2334444444
No 16
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.72 E-value=1.8e+02 Score=23.08 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=47.3
Q ss_pred eeccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhc--hHHHHHHHHHHHH
Q 023231 83 SVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLI 160 (285)
Q Consensus 83 ~~~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~v~~~l~ 160 (285)
..+.|+||..+.+-+...- -... .......++....+.+...+++.+++|+... -+.+..++..+.+
T Consensus 107 vdVkT~DGy~lRvf~i~fT-~kra----------~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k 175 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMAIA-MRRI----------QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAK 175 (198)
T ss_dssp EEEECTTSCEEEEEEEEEE-CSSC----------CCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEE-eccc----------cchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhC
Confidence 3468999999987765432 2111 1222335777788888889999999999985 4777777777665
Q ss_pred HH
Q 023231 161 KR 162 (285)
Q Consensus 161 ~~ 162 (285)
.-
T Consensus 176 ~I 177 (198)
T 3j20_A 176 KI 177 (198)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 17
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=30.35 E-value=69 Score=19.73 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=14.4
Q ss_pred hhcCCeEEEEEEEeeccCCHH
Q 023231 163 ARDFNIVLDDVAITHLSYGAE 183 (285)
Q Consensus 163 l~~~Gi~v~~v~I~~i~~p~~ 183 (285)
...|.+.|.+|.+.|+.+|..
T Consensus 32 ~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 32 ASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHCCCEEEEEEECC-----
T ss_pred cccccceecceeEEeccCCCc
Confidence 448999999999999999864
No 18
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.38 E-value=3.9e+02 Score=24.34 Aligned_cols=6 Identities=33% Similarity=0.180 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023231 189 EQKQVA 194 (285)
Q Consensus 189 ~~~~~a 194 (285)
.+.+.|
T Consensus 19 arvqka 24 (497)
T 3iox_A 19 ARVQKA 24 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 19
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=25.12 E-value=30 Score=20.92 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=14.9
Q ss_pred hHHHhHHHHHHHHHHHHHHhhcceEEecCCce
Q 023231 9 SFLTNIARAAFGLGAAATVLNSSLYTVDGGER 40 (285)
Q Consensus 9 ~~m~~~~~~~~~l~~~~~~~~~~~~~V~~g~~ 40 (285)
.||+.+..-++.+..+..+.....+.|||...
T Consensus 13 qfln~l~~G~~a~~a~~~~~P~v~ffvpP~~g 44 (49)
T 1q90_R 13 NIMNLILAGGAGLPITTLALGYGAFFVPPSSG 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeecCCccC
Confidence 35776655444444444444444455666543
No 20
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=24.48 E-value=29 Score=19.27 Aligned_cols=17 Identities=24% Similarity=0.002 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhcce
Q 023231 16 RAAFGLGAAATVLNSSL 32 (285)
Q Consensus 16 ~~~~~l~~~~~~~~~~~ 32 (285)
-++++++.++.++++++
T Consensus 18 y~GLLlifvlavlFssy 34 (37)
T 3arc_L 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34555555666666654
No 21
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.83 E-value=2.8e+02 Score=22.15 Aligned_cols=9 Identities=0% Similarity=0.121 Sum_probs=4.1
Q ss_pred CHHHHHHHH
Q 023231 181 GAEFSRAVE 189 (285)
Q Consensus 181 p~~~~~ai~ 189 (285)
|+++.+.++
T Consensus 10 ~~~v~~~i~ 18 (233)
T 4efa_E 10 PNQVNDELN 18 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344544444
No 22
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=22.45 E-value=2.1e+02 Score=21.83 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHH-hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023231 150 HVSALVRESLIKR-ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEG 221 (285)
Q Consensus 150 ~i~~~v~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~a 221 (285)
.+.+.+.+.+.+. +.=..+.|.++...+ .+-+.+.+.+++.+.+++ .+..|++++++..+.+++
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A-------~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRA-------RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 3444444555432 234468899999774 466777777777654433 355677777776666655
Done!