Query 023233
Match_columns 285
No_of_seqs 133 out of 235
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 29.4 32 0.0011 27.1 2.6 34 104-139 31-65 (118)
2 1obb_A Maltase, alpha-glucosid 12.6 69 0.0024 31.3 1.4 42 234-280 167-208 (480)
3 1srb_A Sarafotoxins precursor; 11.5 21 0.00073 21.7 -1.7 6 210-215 12-17 (26)
4 3hgl_A Effector protein hopab2 11.3 1.7E+02 0.0057 22.3 2.8 35 99-133 40-80 (85)
5 2l8s_A Integrin alpha-1; trans 10.5 1.1E+02 0.0037 21.6 1.4 8 5-12 7-14 (54)
6 2z14_A EF-hand domain-containi 10.3 1.2E+02 0.0041 24.6 1.9 20 58-77 79-98 (133)
7 2lde_A Sarafotoxin-I3; endothe 10.3 25 0.00084 21.4 -1.7 6 210-215 12-17 (26)
8 3tjy_A Effector protein hopab3 10.1 1.9E+02 0.0066 22.3 2.9 36 98-133 37-78 (94)
9 2l16_A SEC-independent protein 9.7 1.4E+02 0.0048 22.2 1.9 26 4-29 4-29 (78)
10 3ebb_A Phospholipase A2-activa 9.5 1.8E+02 0.0061 26.4 2.9 62 39-112 3-64 (304)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=29.37 E-value=32 Score=27.09 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=27.6
Q ss_pred ChHHHHhhcCCCCCcHHHHHHHHHHH-HhccCCCCCC
Q 023233 104 ELPYLLEFFSFSKDSHQAEAMKYTLT-QCELQPLKGE 139 (285)
Q Consensus 104 ~l~~iL~~Fsi~~~S~~A~~m~~TL~-~CE~~~~~GE 139 (285)
.|.+||+.|-|+. +-|-.+..||+ -||.-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 3789999999975 67889999994 5998776554
No 2
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=12.63 E-value=69 Score=31.26 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred eeeEEEEeecCCCCCCCCchhhhhhccCCCCCceeeeeeCCcEEEee
Q 023233 234 RVEAAAVCHMDTSQWNRDHASFRVLKIEPGTSPVCHFLPVDNLVWVP 280 (285)
Q Consensus 234 ~v~avAVCH~DTS~W~p~H~aF~~L~vkPG~~pVCHfl~~~~ivWvp 280 (285)
+.+.+++||.+-+ -.+.. +.||+.|.++. .-.+.-||+.|.-
T Consensus 167 ~~rviG~c~~~~~---~~~~l-~~lgv~~~~v~-~~v~GlNH~~w~~ 208 (480)
T 1obb_A 167 PIKAVGFCHGHYG---VMEIV-EKLGLEEEKVD-WQVAGVNHGIWLN 208 (480)
T ss_dssp CSEEEEECSGGGH---HHHHH-HHTTCCGGGEE-EEEEEETTEEEEE
T ss_pred CCcEEecCCCHHH---HHHHH-HHhCCCHHHce-EEEEeecchhhhh
Confidence 3477899999875 35666 99999997653 3357779999984
No 3
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=11.50 E-value=21 Score=21.67 Aligned_cols=6 Identities=33% Similarity=1.541 Sum_probs=3.6
Q ss_pred EEEeee
Q 023233 210 VFYCHY 215 (285)
Q Consensus 210 VfyCH~ 215 (285)
|||||-
T Consensus 12 ~YfChl 17 (26)
T 1srb_A 12 LYFCHQ 17 (26)
T ss_dssp HHHHSC
T ss_pred EEEEec
Confidence 566663
No 4
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=11.33 E-value=1.7e+02 Score=22.34 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCCCCChHHHHhhc------CCCCCcHHHHHHHHHHHHhcc
Q 023233 99 PFSSSELPYLLEFF------SFSKDSHQAEAMKYTLTQCEL 133 (285)
Q Consensus 99 PFSs~~l~~iL~~F------si~~~S~~A~~m~~TL~~CE~ 133 (285)
-||.-.-.-+++.| +|..+|..|...+.+|+.-.+
T Consensus 40 alsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~alrr~v~ 80 (85)
T 3hgl_A 40 AFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH 80 (85)
T ss_dssp CCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHHHHHHH
Confidence 34444444556666 899999999999999986543
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.50 E-value=1.1e+02 Score=21.58 Aligned_cols=8 Identities=13% Similarity=0.053 Sum_probs=4.6
Q ss_pred chhHHHHH
Q 023233 5 LSSRSFTL 12 (285)
Q Consensus 5 ~~~~~~~~ 12 (285)
...|++++
T Consensus 7 vp~WiIi~ 14 (54)
T 2l8s_A 7 VPLWVILL 14 (54)
T ss_dssp CCTHHHHH
T ss_pred CchHHHHH
Confidence 45676653
No 6
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=10.32 E-value=1.2e+02 Score=24.56 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=17.7
Q ss_pred CCCcccccCCCCCCceeecc
Q 023233 58 SEQIFFTISDLKIGKSLPIY 77 (285)
Q Consensus 58 ~~~~FF~e~dL~~G~~m~l~ 77 (285)
...-|+..+||++|++++++
T Consensus 79 ~~~~~~~~~Dl~VG~~v~i~ 98 (133)
T 2z14_A 79 DEDQFYTVYHFNVGTEVVFY 98 (133)
T ss_dssp CTTSBCCGGGCCTTCEEEET
T ss_pred ccCcccCHHHcccCCEEEEe
Confidence 45679999999999999986
No 7
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=10.30 E-value=25 Score=21.40 Aligned_cols=6 Identities=33% Similarity=1.054 Sum_probs=3.5
Q ss_pred EEEeee
Q 023233 210 VFYCHY 215 (285)
Q Consensus 210 VfyCH~ 215 (285)
|||||-
T Consensus 12 ~yfChl 17 (26)
T 2lde_A 12 MNFCHK 17 (26)
T ss_dssp HHHHST
T ss_pred heeecc
Confidence 566663
No 8
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=10.15 E-value=1.9e+02 Score=22.32 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCCCCCChHHHHhhc------CCCCCcHHHHHHHHHHHHhcc
Q 023233 98 IPFSSSELPYLLEFF------SFSKDSHQAEAMKYTLTQCEL 133 (285)
Q Consensus 98 IPFSs~~l~~iL~~F------si~~~S~~A~~m~~TL~~CE~ 133 (285)
+-||.-...-+|+.| +|..+|..|...+.+|+.-.+
T Consensus 37 valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrrav~ 78 (94)
T 3tjy_A 37 MILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRADS 78 (94)
T ss_dssp CCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHHHH
Confidence 345544455666776 899999999999999987654
No 9
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=9.74 E-value=1.4e+02 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHHHHhhhcCCcccee
Q 023233 4 LLSSRSFTLCVLLVLMFAQKSTTRKV 29 (285)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (285)
.+.+|-+++-+++++.+++..+-.++
T Consensus 4 ~ig~~ElliIlvVaLlvfGpkkLP~l 29 (78)
T 2l16_A 4 NIGIPGLILIFVIALIIFGPSKLPEI 29 (78)
T ss_dssp SSCHHHHHHHHHHHHHHSCTTTHHHH
T ss_pred CCCHHHHHHHHHHHhheeCccHhHHH
Confidence 36677777777788888876644333
No 10
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=9.45 E-value=1.8e+02 Score=26.45 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccCCCCCccccccCCCCCCCCcccccCCCCCCceeecccCCCCCCCCCCCCCccccccCCCCCCChHHHHhhc
Q 023233 39 ANTDGHSSSSHMMNNHMDPSEQIFFTISDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFF 112 (285)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~FF~e~dL~~G~~m~l~f~~~~~~~~~~fLPR~vAdsIPFSs~~l~~iL~~F 112 (285)
+.|+||++.+...-..+.....-|=.+.--+||. +.+.+.++| ..+-+.|...++..|++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~Dp~~~~~~y~p~~----------~~~~~k~~P--~~~yl~f~~an~~~i~~KL 64 (304)
T 3ebb_A 3 SSHHHHHHSSGLVPRGSMAGVDPFTGNSAYRSAA----------SKTMNIYFP--KKEAVTFDQANPTQILGKL 64 (304)
T ss_dssp -----------------------------------------------CCSSCC--CCSCCCCCCCCHHHHHHHH
T ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCcCCCC----------CCCCCCcCC--CccceehhccCHHHHHHHH
Done!