Query 023233
Match_columns 285
No_of_seqs 133 out of 235
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 47.4 5.7 0.00042 27.1 2.6 34 104-139 22-56 (70)
2 d1piwa1 b.35.1.2 (A:1-152,A:32 24.1 9.6 0.0007 30.3 0.6 39 211-249 10-54 (192)
3 d1n4xl_ b.1.1.1 (L:) Immunoglo 17.9 44 0.0032 23.7 3.3 9 209-217 90-98 (113)
4 d1ncwl1 b.1.1.1 (L:1-107) Immu 16.7 49 0.0036 23.5 3.3 9 209-217 89-97 (112)
5 d1rjwa1 b.35.1.2 (A:1-137,A:30 16.5 6.5 0.00048 29.9 -2.0 15 234-248 31-45 (171)
6 d1vj0a1 b.35.1.2 (A:2-155,A:33 16.1 9.4 0.00068 30.2 -1.2 21 233-253 34-54 (184)
7 d1h9ma2 b.40.6.2 (A:74-141) Cy 16.0 1.2E+02 0.0085 19.5 4.9 43 223-277 22-64 (68)
8 d1guta_ b.40.6.1 (A:) Molybdat 15.9 1.1E+02 0.0078 19.7 4.7 43 222-276 21-63 (67)
9 d1miwa1 a.173.1.1 (A:140-404) 15.5 42 0.003 26.1 2.8 45 106-157 213-257 (265)
10 d1mjul1 b.1.1.1 (L:1-107) Immu 15.0 53 0.0038 23.2 3.0 8 209-216 89-96 (112)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=47.38 E-value=5.7 Score=27.13 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=27.3
Q ss_pred ChHHHHhhcCCCCCcHHHHHHHHHHH-HhccCCCCCC
Q 023233 104 ELPYLLEFFSFSKDSHQAEAMKYTLT-QCELQPLKGE 139 (285)
Q Consensus 104 ~l~~iL~~Fsi~~~S~~A~~m~~TL~-~CE~~~~~GE 139 (285)
.|.+||+.|.|+. +.|-.++.||+ -||.-|.+-|
T Consensus 22 ~ledilaqfeis~--~~ayniqr~l~~ice~hpdece 56 (70)
T d2vqca1 22 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 56 (70)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 3789999999975 67889999994 5998776544
No 2
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.11 E-value=9.6 Score=30.28 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=22.4
Q ss_pred EEeeecCCCc--EEEEEEeec-CCC---ceeeEEEEeecCCCCCC
Q 023233 211 FYCHYQESEN--KLFQVSLTG-ENG---VRVEAAAVCHMDTSQWN 249 (285)
Q Consensus 211 fyCH~~~~~t--~vY~V~L~g-~dG---~~v~avAVCH~DTS~W~ 249 (285)
|.|+...... +.-+++..- .+| -|++|.+|||.|...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~ 54 (192)
T d1piwa1 10 IAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAA 54 (192)
T ss_dssp EEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHT
T ss_pred EEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHc
Confidence 5666654322 333333321 334 37899999999965554
No 3
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
Probab=17.94 E-value=44 Score=23.69 Aligned_cols=9 Identities=22% Similarity=0.940 Sum_probs=6.8
Q ss_pred EEEEeeecC
Q 023233 209 AVFYCHYQE 217 (285)
Q Consensus 209 aVfyCH~~~ 217 (285)
|||||..-.
T Consensus 90 avYyCa~~~ 98 (113)
T d1n4xl_ 90 GIYYCFQGS 98 (113)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEECC
Confidence 789997653
No 4
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
Probab=16.71 E-value=49 Score=23.48 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=6.6
Q ss_pred EEEEeeecC
Q 023233 209 AVFYCHYQE 217 (285)
Q Consensus 209 aVfyCH~~~ 217 (285)
|||||-...
T Consensus 89 AvYYC~~~~ 97 (112)
T d1ncwl1 89 GVYYCWQGT 97 (112)
T ss_dssp EEEEEEECS
T ss_pred EeEEEEcCC
Confidence 789996543
No 5
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.46 E-value=6.5 Score=29.95 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=12.0
Q ss_pred eeeEEEEeecCCCCC
Q 023233 234 RVEAAAVCHMDTSQW 248 (285)
Q Consensus 234 ~v~avAVCH~DTS~W 248 (285)
|+++.+|||.|...|
T Consensus 31 kv~a~gic~sD~~~~ 45 (171)
T d1rjwa1 31 RIKACGVCHTDLHAA 45 (171)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred EEEEeeccccceeee
Confidence 679999999995544
No 6
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=16.07 E-value=9.4 Score=30.23 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=16.8
Q ss_pred ceeeEEEEeecCCCCCCCCch
Q 023233 233 VRVEAAAVCHMDTSQWNRDHA 253 (285)
Q Consensus 233 ~~v~avAVCH~DTS~W~p~H~ 253 (285)
-|+++.+|||+|...|.-..+
T Consensus 34 Vkv~a~gIC~sD~~~~~G~~~ 54 (184)
T d1vj0a1 34 VEILSAGVCGSDVHMFRGEDP 54 (184)
T ss_dssp EEEEEEEECHHHHHHHTTCCT
T ss_pred EEEEEECCCCCchhheeccCC
Confidence 378999999999988875443
No 7
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=15.98 E-value=1.2e+02 Score=19.54 Aligned_cols=43 Identities=16% Similarity=0.385 Sum_probs=27.8
Q ss_pred EEEEeecCCCceeeEEEEeecCCCCCCCCchhhhhhccCCCCCceeeeeeCCcEE
Q 023233 223 FQVSLTGENGVRVEAAAVCHMDTSQWNRDHASFRVLKIEPGTSPVCHFLPVDNLV 277 (285)
Q Consensus 223 Y~V~L~g~dG~~v~avAVCH~DTS~W~p~H~aF~~L~vkPG~~pVCHfl~~~~iv 277 (285)
.+|.+.-.+|..+.|+-- .-+++.|+++||+ +|+=.+...+++
T Consensus 22 ~~V~l~~~~g~~l~a~IT-----------~~s~~~L~L~~G~-~V~a~iKa~~Vi 64 (68)
T d1h9ma2 22 AEVTLALQGGTEITSMVT-----------KEAVAELGLKPGA-SASAVIKASNVI 64 (68)
T ss_dssp EEEEEEETTSCEEEEEEE-----------HHHHHHTTCCTTC-EEEEEECGGGCE
T ss_pred EEEEEEeCCCCEEEEEeC-----------HHHHhhCCCCCCC-EEEEEEEccEEE
Confidence 345554456666666432 4678999999997 577666555543
No 8
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
Probab=15.92 E-value=1.1e+02 Score=19.72 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=27.2
Q ss_pred EEEEEeecCCCceeeEEEEeecCCCCCCCCchhhhhhccCCCCCceeeeeeCCcE
Q 023233 222 LFQVSLTGENGVRVEAAAVCHMDTSQWNRDHASFRVLKIEPGTSPVCHFLPVDNL 276 (285)
Q Consensus 222 vY~V~L~g~dG~~v~avAVCH~DTS~W~p~H~aF~~L~vkPG~~pVCHfl~~~~i 276 (285)
..+|.+.-.+|..+.|.-- .-+++.|+++||+ +|.=.+...++
T Consensus 21 ~~~V~l~l~~g~~l~a~IT-----------~~s~~~L~L~~G~-~V~a~iKa~~V 63 (67)
T d1guta_ 21 TAEVVLEIAGGNKITSIIS-----------LDSVEELGVKEGA-ELTAVVKSTDV 63 (67)
T ss_dssp EEEEEEEETTSCEEEEEEE-----------HHHHHHHTCCTTC-EEEEECCGGGC
T ss_pred cEEEEEEeCCCCEEEEEcC-----------HHHHHHCCCCCCC-EEEEEEEhheE
Confidence 3456665457777766532 4578999999997 45444444433
No 9
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.50 E-value=42 Score=26.15 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHhccCCCCCCcccccccHHHHHHHhhhc
Q 023233 106 PYLLEFFSFSKDSHQAEAMKYTLTQCELQPLKGETKFCATSLESMLDFTRGV 157 (285)
Q Consensus 106 ~~iL~~Fsi~~~S~~A~~m~~TL~~CE~~~~~GE~K~CaTSLESMvdFa~s~ 157 (285)
.+|++.++++||...++. |+..+..-+.|+ +.++-|++++|+.+.
T Consensus 213 ~dL~~~~g~~pGp~iG~i----l~~l~~~~l~~~---~~n~ke~l~~~l~~~ 257 (265)
T d1miwa1 213 KDVIEWVGKPAGPWVKEA----LDAIWRAVVNGE---VENEKERIYAWLMER 257 (265)
T ss_dssp HHHHHHHTCCSSHHHHHH----HHHHHHHHHTTS---SCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHH----HHHHHHHHHcCC---CCCCHHHHHHHHHHh
Confidence 478899999998655554 444444444455 557899999998764
No 10
>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
Probab=15.04 E-value=53 Score=23.15 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=6.2
Q ss_pred EEEEeeec
Q 023233 209 AVFYCHYQ 216 (285)
Q Consensus 209 aVfyCH~~ 216 (285)
|||||-..
T Consensus 89 AvYyCa~~ 96 (112)
T d1mjul1 89 GVYYCLQH 96 (112)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEeC
Confidence 78999654
Done!