BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023235
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 34.3 bits (77), Expect = 0.97, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 41 DISSSAVSRTRSRIHYDGPAKIAFLFLARRELPLDFLW---------GSFFEIADVE--- 88
+I+ +VS S+ HYDG AKI + RRELP D W ++FE+ ++
Sbjct: 26622 NITRKSVSLKWSKPHYDGGAKITGYIVERRELP-DGRWLKCNYTNIQETYFEVTELTEDQ 26680
Query: 89 --NFSIFIHSA 97
F +F +A
Sbjct: 26681 RYEFRVFARNA 26691
>sp|Q8ZM76|GCSP_SALTY Glycine dehydrogenase [decarboxylating] OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=gcvP PE=3 SV=3
Length = 957
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|C0PY26|GCSP_SALPC Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi C
(strain RKS4594) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|A9N3N1|GCSP_SALPB Glycine dehydrogenase [decarboxylating] OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B4T548|GCSP_SALNS Glycine dehydrogenase [decarboxylating] OS=Salmonella newport
(strain SL254) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5F5H7|GCSP_SALA4 Glycine dehydrogenase [decarboxylating] OS=Salmonella agona (strain
SL483) GN=gcvP PE=3 SV=1
Length = 957
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|Q8Z3X0|GCSP_SALTI Glycine dehydrogenase [decarboxylating] OS=Salmonella typhi GN=gcvP
PE=3 SV=3
Length = 957
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G+S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGDSHGLNIETLDKDVALDSRSIQQGMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B4TGX3|GCSP_SALHS Glycine dehydrogenase [decarboxylating] OS=Salmonella heidelberg
(strain SL476) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 5.1, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5RE14|GCSP_SALG2 Glycine dehydrogenase [decarboxylating] OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 5.1, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5QXI0|GCSP_SALEP Glycine dehydrogenase [decarboxylating] OS=Salmonella enteritidis
PT4 (strain P125109) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 5.1, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|B5FUG6|GCSP_SALDC Glycine dehydrogenase [decarboxylating] OS=Salmonella dublin
(strain CT_02021853) GN=gcvP PE=3 SV=1
Length = 957
Score = 32.0 bits (71), Expect = 5.1, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 94 IHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVLL 153
IH+A G DE TTR QL N V G S + E L + AL+ + Q+ +L
Sbjct: 416 IHNAVGITLDETTTRENV---AQLFN---VLLGGSHGLNIETLDKDVALDSRSIQQSMLR 469
Query: 154 SDSCV--PIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMSP 195
D+ + P++N + +M S L+RK+ N M P
Sbjct: 470 DDAILTHPVFNRYHSETEMMRYMHS-----LERKDLALNQAMIP 508
>sp|P10476|GUNA_CELJU Endoglucanase A OS=Cellvibrio japonicus (strain Ueda107) GN=celA
PE=3 SV=2
Length = 962
Score = 31.6 bits (70), Expect = 7.1, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 105 LTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALEDPANQRFVL 152
LTT+S Y LS S++ WG +S+IA + +L+ A + NQ F L
Sbjct: 445 LTTQSASGYPAPLS-SLEYYWGSNSVIANKLVLMGLAYDFSGNQNFAL 491
>sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
Length = 2517
Score = 31.6 bits (70), Expect = 7.3, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 142 LEDPANQRFVL-LSDSCVPIYNFSYVYKYLMASPRSFVDSFLDRKESRYNPKMS-PTIPK 199
+EDP+ +L LS C P+ Y+Y P F D+ LDR S Y+ + P +
Sbjct: 1688 IEDPSPAISILVLSPRCWPVSPLCYLYHPRKCLPTEFCDA-LDRFSSFYSQSQNHPVLDM 1746
Query: 200 GKWRKGSQWITLIR 213
G R+ QW L R
Sbjct: 1747 GPHRR-LQWTWLGR 1759
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,916,432
Number of Sequences: 539616
Number of extensions: 3916174
Number of successful extensions: 9056
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9046
Number of HSP's gapped (non-prelim): 24
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)