Query 023235
Match_columns 285
No_of_seqs 178 out of 555
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 4E-40 8.7E-45 296.9 6.0 189 62-264 1-207 (244)
2 PLN03183 acetylglucosaminyltra 100.0 5.8E-36 1.3E-40 290.9 19.4 189 58-263 76-307 (421)
3 KOG0799 Branching enzyme [Carb 99.9 6.2E-23 1.3E-27 201.5 12.7 188 60-259 103-313 (439)
4 cd06439 CESA_like_1 CESA_like_ 69.8 20 0.00043 31.4 7.3 100 55-171 24-132 (251)
5 TIGR03472 HpnI hopanoid biosyn 56.9 1.8E+02 0.004 27.7 12.4 101 59-170 40-148 (373)
6 PHA03054 IMV membrane protein; 35.6 55 0.0012 24.8 3.4 34 1-34 31-64 (72)
7 cd02511 Beta4Glucosyltransfera 33.4 1.4E+02 0.003 26.1 6.4 96 61-173 1-99 (229)
8 PRK14583 hmsR N-glycosyltransf 33.2 3.7E+02 0.008 26.4 10.0 92 59-161 74-170 (444)
9 PF06718 DUF1203: Protein of u 28.7 2.3E+02 0.005 23.3 6.4 84 63-154 16-105 (117)
10 PHA02650 hypothetical protein; 24.9 1.1E+02 0.0024 23.6 3.6 26 11-36 42-67 (81)
11 PRK07132 DNA polymerase III su 24.3 3.2E+02 0.0069 25.9 7.4 99 57-155 14-128 (299)
12 PF12575 DUF3753: Protein of u 24.1 1.1E+02 0.0024 23.2 3.4 33 1-33 31-64 (72)
13 TIGR01310 L7 60S ribosomal pro 22.6 3E+02 0.0064 25.5 6.6 98 57-174 69-168 (235)
14 TIGR03111 glyc2_xrt_Gpos1 puta 22.4 7.4E+02 0.016 24.3 12.2 102 57-173 46-159 (439)
15 PF07092 DUF1356: Protein of u 22.3 33 0.00072 31.7 0.4 31 7-39 69-99 (238)
16 cd02520 Glucosylceramide_synth 21.2 4.9E+02 0.011 21.7 8.6 40 60-100 1-41 (196)
17 cd02525 Succinoglycan_BP_ExoA 21.0 5.2E+02 0.011 21.9 8.5 93 61-171 1-104 (249)
18 cd04184 GT2_RfbC_Mx_like Myxoc 20.8 4.6E+02 0.01 21.5 7.2 86 60-160 1-97 (202)
19 PRK11204 N-glycosyltransferase 20.8 5.8E+02 0.013 24.4 8.7 101 57-172 51-161 (420)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=4e-40 Score=296.90 Aligned_cols=189 Identities=26% Similarity=0.399 Sum_probs=124.1
Q ss_pred EEEEEEeCC-CCChHHHHHHhhhhcCCCceEEEEEeCCCCCc---ccc----ccCCcceeccccCCceeeecCcccHHHH
Q 023235 62 IAFLFLARR-ELPLDFLWGSFFEIADVENFSIFIHSAPGFVF---DEL----TTRSKFFYGRQLSNSIQVAWGESSMIAA 133 (285)
Q Consensus 62 iAfLiLah~-~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~---~~~----~~~~~vf~~r~I~~rv~V~WGg~SlV~A 133 (285)
|||||+||+ +++| ++++++.++++++.+|||||+|++. +.. ...++++ ++++|++|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~---~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~---~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQ---LERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVH---FVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHH---HHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEE---E-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHH---HHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCcee---ecccccccccCCccHHHH
Confidence 799999988 7778 8999999998899999999999651 111 1234444 678899999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CCCceeccccCCC---CccCCC----CCCCCCCCccc
Q 023235 134 ERLLLEAALE-DPANQRFVLLSDSCVPIYNFSYVYKYLMAS--PRSFVDSFLDRKE---SRYNPK----MSPTIPKGKWR 203 (285)
Q Consensus 134 tl~LL~~AL~-d~~~~yf~LLSGsD~PL~s~~~I~~fL~~~--~~sFI~~~~~~~~---~RY~~~----m~p~i~~~~~~ 203 (285)
|+.||++|++ +++|+|||+|||+|+||+|+++|++||+.+ +.+|+++...... .||... +.+.+...+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999997 3788988654321 455432 22223334899
Q ss_pred ccCceeeecHHHHHHhhcCcchHHHHhhhcCCCCCCccccCCCCccchhHhhhhhhHHhhH
Q 023235 204 KGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMCDYIRQRVSLLLKFSK 264 (285)
Q Consensus 204 ~GSQW~sLtR~~a~yIl~d~~~~~~Fk~~c~d~~~~d~~e~~~~~e~~l~tl~~~~~~~~~ 264 (285)
+|||||+|||++|+||++|....+.++++|...++ +||.|++|++.+...+.+
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~--------pDE~ffqTll~n~~~~~~ 207 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLC--------PDESFFQTLLNNSGHFKD 207 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSS--------GGGTHHHHH--SSGGG-B
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccC--------cchhhHHHhhcccchhcc
Confidence 99999999999999999888888888888744333 678999999887754443
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=290.89 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=145.1
Q ss_pred CCCeEEEEEEeC-CCCChHHHHHHhhhhcCCCceEEEEEeCCCCCccc------c-------ccCCcceeccccCCceee
Q 023235 58 GPAKIAFLFLAR-RELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE------L-------TTRSKFFYGRQLSNSIQV 123 (285)
Q Consensus 58 ~~~KiAfLiLah-~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~------~-------~~~~~vf~~r~I~~rv~V 123 (285)
.++||||||++| ++.+| ++||++.+|++++.||||+|+|++..+ . ...+||+ ++.++..|
T Consensus 76 ~~~r~AYLI~~h~~d~~~---l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~---vl~k~~~V 149 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEK---LWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVY---MITKANLV 149 (421)
T ss_pred CCCeEEEEEEecCCcHHH---HHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEE---EEecceee
Confidence 479999999999 67788 999999999999999999999986421 0 1234665 56778899
Q ss_pred ecCcccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHH-HHHHHhcC-CCCceeccccCC---CCccCCC-----
Q 023235 124 AWGESSMIAAERLLLEAALE-DPANQRFVLLSDSCVPIYNFSY-VYKYLMAS-PRSFVDSFLDRK---ESRYNPK----- 192 (285)
Q Consensus 124 ~WGg~SlV~Atl~LL~~AL~-d~~~~yf~LLSGsD~PL~s~~~-I~~fL~~~-~~sFI~~~~~~~---~~RY~~~----- 192 (285)
.|||+|||+||+++|+.+|+ ..+|+|||+|||+||||+++++ |+.|+..+ ++|||++..+.+ ..|+.+.
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 99999999999999999998 4799999999999999999999 56777764 589999754321 1222110
Q ss_pred ---------CC----CC-CCCCcccccCceeeecHHHHHHhhc--C--cchHHHHhhhcCCCCCCccccCCCCccchhHh
Q 023235 193 ---------MS----PT-IPKGKWRKGSQWITLIRRHAEVIVD--D--EIIFPVFKKCCKRRPPLDARKGKMNMCDYIRQ 254 (285)
Q Consensus 193 ---------m~----p~-i~~~~~~~GSQW~sLtR~~a~yIl~--d--~~~~~~Fk~~c~d~~~~d~~e~~~~~e~~l~t 254 (285)
++ .. +.+.++++|||||+|||++|+||++ | ++....|.+.+. .+||.|+.|
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~-----------~pdE~fFqT 298 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFV-----------SSPEGYFHT 298 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCC-----------CCchHHHHH
Confidence 00 01 2468899999999999999999996 3 455555555221 245689999
Q ss_pred hhhhhHHhh
Q 023235 255 RVSLLLKFS 263 (285)
Q Consensus 255 l~~~~~~~~ 263 (285)
.+.+...+.
T Consensus 299 Vl~NS~~f~ 307 (421)
T PLN03183 299 VICNVPEFA 307 (421)
T ss_pred HHhhccccc
Confidence 988776544
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6.2e-23 Score=201.51 Aligned_cols=188 Identities=16% Similarity=0.116 Sum_probs=144.8
Q ss_pred CeEEEEEEeCCCCChHHHHHHhhhhcCCCceEEEEEeCCCCCcc--cc-ccCCcceecc-ccCCceeeecCcccHHHHHH
Q 023235 60 AKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--EL-TTRSKFFYGR-QLSNSIQVAWGESSMIAAER 135 (285)
Q Consensus 60 ~KiAfLiLah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~--~~-~~~~~vf~~r-~I~~rv~V~WGg~SlV~Atl 135 (285)
--+||+.++|++.++ ++|++++++++++.++||+|+++... .. ..-..+|.|. .++++..|.|||.|+++|++
T Consensus 103 ~~~a~~~~v~kd~~~---verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l 179 (439)
T KOG0799|consen 103 FPAAFLRVVYKDYEQ---VERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHL 179 (439)
T ss_pred cceEEEEeecccHHH---HHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHH
Confidence 357888999999999 99999999999999999999998632 11 1223444443 34679999999999999999
Q ss_pred HHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCCceeccccCC--CCc--c-C-----------CCCCCC-
Q 023235 136 LLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMA-SPRSFVDSFLDRK--ESR--Y-N-----------PKMSPT- 196 (285)
Q Consensus 136 ~LL~~AL~d-~~~~yf~LLSGsD~PL~s~~~I~~fL~~-~~~sFI~~~~~~~--~~R--Y-~-----------~~m~p~- 196 (285)
++|+.+++. .+|+||++|||+|+||+|+.+|.+.|.. ++.+||+.....+ ..| + . ..+++.
T Consensus 180 ~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~l 259 (439)
T KOG0799|consen 180 NCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVIL 259 (439)
T ss_pred HHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccC
Confidence 999999985 5799999999999999999999999988 8899999744221 111 1 1 011122
Q ss_pred CCCCcccccCceeeecHHHHHHhhcCcchHHHHhhhcCCCCCCccccCCCCccchhHhhhhhh
Q 023235 197 IPKGKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMCDYIRQRVSLL 259 (285)
Q Consensus 197 i~~~~~~~GSQW~sLtR~~a~yIl~d~~~~~~Fk~~c~d~~~~d~~e~~~~~e~~l~tl~~~~ 259 (285)
+.+.++++||.|++|+|++|+|++.+......++.+- +.. .+||+|+.|+..+.
T Consensus 260 p~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~~ll~~~~-~t~--------~~dE~f~~Tl~~n~ 313 (439)
T KOG0799|consen 260 PTALKLFKGSAWVSLSRAFVEYLISGNLPRTLLMYYN-NTY--------SPDEGFFHTLQCNP 313 (439)
T ss_pred CCceEEEecceeEEEeHHHHHHHhcCccHHHHHHHHh-Ccc--------CcchhhhHhhhccc
Confidence 3468899999999999999999999854333333332 332 36789999999887
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=69.82 E-value=20 Score=31.39 Aligned_cols=100 Identities=12% Similarity=-0.052 Sum_probs=56.8
Q ss_pred CCCCCCeEEEEEEeCCCCChHHHHHHhhhhc---CCCc--eEEEEEeCCCCCccc----cccCCcceeccccCCceeeec
Q 023235 55 HYDGPAKIAFLFLARRELPLDFLWGSFFEIA---DVEN--FSIFIHSAPGFVFDE----LTTRSKFFYGRQLSNSIQVAW 125 (285)
Q Consensus 55 ~~~~~~KiAfLiLah~~~~~~~l~~rl~~~l---d~~~--~~IyIHvD~k~~~~~----~~~~~~vf~~r~I~~rv~V~W 125 (285)
+....++++.+|.+|++... +.+.++++ ..+. +.|+|..|...+-.. .....++. .+.. ...
T Consensus 24 ~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~---~i~~---~~~ 94 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVK---LLRF---PER 94 (251)
T ss_pred CCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEE---EEEc---CCC
Confidence 45667899999999998754 44444443 1122 789999887754111 00011121 1211 112
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023235 126 GESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLM 171 (285)
Q Consensus 126 Gg~SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s~~~I~~fL~ 171 (285)
.+...|-...++.| ..++++++.+.|+|- .+.+.+.+.
T Consensus 95 --~g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 95 --RGKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred --CChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 23455555555544 349999999999995 455555443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=56.90 E-value=1.8e+02 Score=27.73 Aligned_cols=101 Identities=10% Similarity=0.006 Sum_probs=50.1
Q ss_pred CCeEEEEEEeCCCCCh-HHHHHHhhhhcCCCceEEEEEeCCCCCcc------cc-ccCCcceeccccCCceeeecCcccH
Q 023235 59 PAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFD------EL-TTRSKFFYGRQLSNSIQVAWGESSM 130 (285)
Q Consensus 59 ~~KiAfLiLah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k~~~~------~~-~~~~~vf~~r~I~~rv~V~WGg~Sl 130 (285)
.+++..+|-+|+..+. .+.++.+.+. +.+.+.|.| +|..++-. +. ....++ ..+.+.+..+..|++ -
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q-~Yp~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~-~i~~v~~~~~~G~~~--K 114 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQ-DYPGFQMLF-GVQDPDDPALAVVRRLRADFPDA-DIDLVIDARRHGPNR--K 114 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhc-CCCCeEEEE-EeCCCCCcHHHHHHHHHHhCCCC-ceEEEECCCCCCCCh--H
Confidence 4679999999998765 2334444443 335688877 55443211 00 001110 011121112223322 2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 023235 131 IAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYL 170 (285)
Q Consensus 131 V~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s~~~I~~fL 170 (285)
+.+..++++. .+.++++++-.+|.| +.+.+.+-.
T Consensus 115 ~~~l~~~~~~----a~ge~i~~~DaD~~~--~p~~L~~lv 148 (373)
T TIGR03472 115 VSNLINMLPH----ARHDILVIADSDISV--GPDYLRQVV 148 (373)
T ss_pred HHHHHHHHHh----ccCCEEEEECCCCCc--ChhHHHHHH
Confidence 3343344443 467888888887777 555554443
No 6
>PHA03054 IMV membrane protein; Provisional
Probab=35.60 E-value=55 Score=24.75 Aligned_cols=34 Identities=6% Similarity=0.236 Sum_probs=19.6
Q ss_pred CCCCCCCCCCceeEEehhHHHHHHHHHHHHHHHH
Q 023235 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALF 34 (285)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (285)
||.|-++......-|++|..++++.++..+.++|
T Consensus 31 l~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 31 LSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHHH
Confidence 4555444443456688888877665444444433
No 7
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=33.42 E-value=1.4e+02 Score=26.11 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=50.6
Q ss_pred eEEEEEEeCCCCChHHHHHHhhhhcCCCceEEEEEeCCCCCcc--ccccCCcceeccccCCceeeecCcccHHHHHHHHH
Q 023235 61 KIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLL 138 (285)
Q Consensus 61 KiAfLiLah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~--~~~~~~~vf~~r~I~~rv~V~WGg~SlV~Atl~LL 138 (285)
+++.+|.+++..+. +++.++++..--..|.| +|..+.-. +.... +..+.+. ..|+|++ .|--..+
T Consensus 1 ~isvii~~~Ne~~~---l~~~l~sl~~~~~eiiv-vD~gStD~t~~i~~~---~~~~v~~----~~~~g~~--~~~n~~~ 67 (229)
T cd02511 1 TLSVVIITKNEERN---IERCLESVKWAVDEIIV-VDSGSTDRTVEIAKE---YGAKVYQ----RWWDGFG--AQRNFAL 67 (229)
T ss_pred CEEEEEEeCCcHHH---HHHHHHHHhcccCEEEE-EeCCCCccHHHHHHH---cCCEEEE----CCCCChH--HHHHHHH
Confidence 47889999998776 78888877422135555 56554311 11111 1111111 1566654 2222233
Q ss_pred HHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 023235 139 EAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS 173 (285)
Q Consensus 139 ~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~~ 173 (285)
+. ...+|+..+-+.+.+-.. .+++.+.+.++
T Consensus 68 ~~----a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 68 EL----ATNDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred Hh----CCCCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 33 345688888888876433 33455555543
No 8
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=33.23 E-value=3.7e+02 Score=26.37 Aligned_cols=92 Identities=7% Similarity=-0.057 Sum_probs=48.5
Q ss_pred CCeEEEEEEeCCCCCh-HHHHHHhhhhcCCCceEEEEEeCCCCCcc-cccc-CCcceeccccCCceeeec--CcccHHHH
Q 023235 59 PAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFD-ELTT-RSKFFYGRQLSNSIQVAW--GESSMIAA 133 (285)
Q Consensus 59 ~~KiAfLiLah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k~~~~-~~~~-~~~vf~~r~I~~rv~V~W--Gg~SlV~A 133 (285)
.++++.+|-+|++... ...++.+.+. +.++++|+|=-|.+.+-. +... ...- ..++.+.. +.-+.-
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q-~yp~~eIivVdDgs~D~t~~~~~~~~~~------~~~v~vv~~~~n~Gka-- 144 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQ-TYTNIEVIAINDGSSDDTAQVLDALLAE------DPRLRVIHLAHNQGKA-- 144 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcC-CCCCeEEEEEECCCCccHHHHHHHHHHh------CCCEEEEEeCCCCCHH--
Confidence 4789999999998754 2334444443 335788877666554311 0000 0000 01122221 111222
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCC
Q 023235 134 ERLLLEAALEDPANQRFVLLSDSCVPIY 161 (285)
Q Consensus 134 tl~LL~~AL~d~~~~yf~LLSGsD~PL~ 161 (285)
..+..+++..+.++++.+.++|+|=.
T Consensus 145 --~AlN~gl~~a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 145 --IALRMGAAAARSEYLVCIDGDALLDK 170 (444)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcCH
Confidence 22344444457899999999999843
No 9
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=28.71 E-value=2.3e+02 Score=23.29 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=49.4
Q ss_pred EEEEEeCCCCChHHHHHHhhhhcCCCceEEEEEeCCCCCccccccCCcce-eccc-----cCCceeeecCcccHHHHHHH
Q 023235 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFF-YGRQ-----LSNSIQVAWGESSMIAAERL 136 (285)
Q Consensus 63 AfLiLah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~~~~~~~vf-~~r~-----I~~rv~V~WGg~SlV~Atl~ 136 (285)
..|++.|..++. .+-+.+..-||||-+.-...........++ .++. -...-.+.+|........-.
T Consensus 16 ~~lLlsy~p~~~--------~~PY~e~gpIFvha~~c~~~~~~~~~P~~l~~~r~~~lR~Y~a~~~iv~g~v~~g~~~~~ 87 (117)
T PF06718_consen 16 ELLLLSYRPFPA--------PSPYRETGPIFVHAEACEAYDGVDELPPVLYRGRLLSLRAYDADGRIVTGRVVEGADIEA 87 (117)
T ss_pred eEEEEecCCCCC--------CCCCCCCCCEEEecCcccCCCCCCCCChhhccCCCeEEEeEcCCCCEEeeeEEcchhHHH
Confidence 467788887743 122456778999999754322110111111 2211 11122233777777767777
Q ss_pred HHHHHhcCCCCCEEEEec
Q 023235 137 LLEAALEDPANQRFVLLS 154 (285)
Q Consensus 137 LL~~AL~d~~~~yf~LLS 154 (285)
.++++++|++..|+|.=|
T Consensus 88 ~l~~~fa~p~VayVHvr~ 105 (117)
T PF06718_consen 88 RLAELFADPEVAYVHVRN 105 (117)
T ss_pred HHHHHhcCCCceEEEeec
Confidence 888899999999988755
No 10
>PHA02650 hypothetical protein; Provisional
Probab=24.93 E-value=1.1e+02 Score=23.64 Aligned_cols=26 Identities=31% Similarity=0.660 Sum_probs=17.7
Q ss_pred ceeEEehhHHHHHHHHHHHHHHHHHH
Q 023235 11 RHVLWFSWKLVTFFCIAFSLVALFRL 36 (285)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (285)
...-|++|..++++.++.++.++|..
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSF 67 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHH
Confidence 44678999988877766665555443
No 11
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=24.33 E-value=3.2e+02 Score=25.88 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCCCeEEEEEEeCCCCChHHHHHHhhhhc--------CCCceE-EEEEeC--CCC-Cccc---cccCCcceeccccCCce
Q 023235 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA--------DVENFS-IFIHSA--PGF-VFDE---LTTRSKFFYGRQLSNSI 121 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~~~l~~rl~~~l--------d~~~~~-IyIHvD--~k~-~~~~---~~~~~~vf~~r~I~~rv 121 (285)
.+...+||||-...+.....+...|.+.+ ..+.+. -++++| .+. ..++ ....-+.+....-..++
T Consensus 14 ~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 44577999999888776555555555554 222222 355567 322 1111 11111111000013456
Q ss_pred eeecCcccHHHHHHHHHHHHhcC-CCCCEEEEecC
Q 023235 122 QVAWGESSMIAAERLLLEAALED-PANQRFVLLSD 155 (285)
Q Consensus 122 ~V~WGg~SlV~Atl~LL~~AL~d-~~~~yf~LLSG 155 (285)
-+.|+.-.|-++..+.|-.-+++ |++.+|++++.
T Consensus 94 vII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred EEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 66676555544444444334455 68999999885
No 12
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.09 E-value=1.1e+02 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCCCCCCCCCceeEEehhHHHHHHH-HHHHHHHH
Q 023235 1 MTKKAAPKVGRHVLWFSWKLVTFFC-IAFSLVAL 33 (285)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 33 (285)
||.|-+...+...-|++|..++... +.+++..+
T Consensus 31 ltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 31 LTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred HcCCccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4566666668888899988666444 44444433
No 13
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=22.61 E-value=3e+02 Score=25.47 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCCeEEEEEEeCCCCChHHHHHHhhhhc--CCCceEEEEEeCCCCCccccccCCcceeccccCCceeeecCcccHHHHH
Q 023235 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA--DVENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAE 134 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~~~l~~rl~~~l--d~~~~~IyIHvD~k~~~~~~~~~~~vf~~r~I~~rv~V~WGg~SlV~At 134 (285)
+..+|++|+|=..+.....+-..+.++.+ ..-.+.++|-..+.. ... + +.++ -=|.||..|+-...
T Consensus 69 ~~e~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~-~~M------L---~~Ve--pYVt~G~p~l~tvr 136 (235)
T TIGR01310 69 PAEHKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKAT-LQM------L---RIVE--PYVAYGYPNLKSVR 136 (235)
T ss_pred CCCCeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHH-HHH------H---HhcC--CeEEEecCCHHHHH
Confidence 34579999999977643333355555544 234455555544331 000 0 0111 13789999875443
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhcCC
Q 023235 135 RLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMASP 174 (285)
Q Consensus 135 l~LL~~AL~d~~~~yf~LLSGsD~PL~s~~~I~~fL~~~~ 174 (285)
-.+.+.+ +.-+.|+-+||-++.-+.+.|...|
T Consensus 137 ~Li~KRG--------~~k~~~~~v~Ltdn~iiE~~lg~~g 168 (235)
T TIGR01310 137 ELIYKRG--------FAKINGQRVPLTDNTIIEQHLGKYG 168 (235)
T ss_pred HHHHHhC--------ceeeCCCeeeCChhHHHHHhhccCC
Confidence 3333321 3557888999999999998885544
No 14
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=22.44 E-value=7.4e+02 Score=24.26 Aligned_cols=102 Identities=8% Similarity=-0.026 Sum_probs=50.8
Q ss_pred CCCCeEEEEEEeCCCCChHHHHHHhhhhcCC---C--ceEEEEEeCCCCCcc-----cc-ccCCcceeccccCCceeeec
Q 023235 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADV---E--NFSIFIHSAPGFVFD-----EL-TTRSKFFYGRQLSNSIQVAW 125 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~~~l~~rl~~~ld~---~--~~~IyIHvD~k~~~~-----~~-~~~~~vf~~r~I~~rv~V~W 125 (285)
...|+++.+|-+|+..+. +.+.++++.. + ..+|+|=-|...+-. +. .....+. .+.++ .+
T Consensus 46 ~~~P~vsVIIP~yNe~~~---l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~-v~~~~----~~- 116 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDT---LFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLS-LRYMN----SD- 116 (439)
T ss_pred CCCCCEEEEEEeCCChHH---HHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeE-EEEeC----CC-
Confidence 335789999999998865 6666665521 2 245555444333211 00 0111121 01111 11
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 023235 126 GESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS 173 (285)
Q Consensus 126 Gg~SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~~ 173 (285)
+|. ..| +..|++..+.++++.+-++|+|-.+ .+++.+.|.++
T Consensus 117 ~Gk--a~A----lN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 117 QGK--AKA----LNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCH--HHH----HHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 332 222 2333333456789999999998433 24455555543
No 15
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=22.29 E-value=33 Score=31.72 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCCCceeEEehhHHHHHHHHHHHHHHHHHHhcc
Q 023235 7 PKVGRHVLWFSWKLVTFFCIAFSLVALFRLHLR 39 (285)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (285)
.+|||-.+|.. +..++|+++|-.++|||-||
T Consensus 69 LKPrRTklyV~--~sV~~CLl~~~L~iFFLfPR 99 (238)
T PF07092_consen 69 LKPRRTKLYVF--LSVLLCLLLSGLVIFFLFPR 99 (238)
T ss_pred cCCceeEEEee--HHHHHHHHHHHheEEEEeCc
Confidence 35677777663 33567778888888999888
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=21.21 E-value=4.9e+02 Score=21.73 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCCCh-HHHHHHhhhhcCCCceEEEEEeCCCC
Q 023235 60 AKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGF 100 (285)
Q Consensus 60 ~KiAfLiLah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k~ 100 (285)
|++..+|-+++..+. ...++.+.+.. .+.+.|.|=.|.+.
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~-~~~~eiivVdd~s~ 41 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQD-YPKYEILFCVQDED 41 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhcc-CCCeEEEEEeCCCc
Confidence 458899999988754 33344444332 35577777555554
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=21.00 E-value=5.2e+02 Score=21.89 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=50.1
Q ss_pred eEEEEEEeCCCCChHHHHHHhhhhcCC-----CceEEEEEeCCCCCc-----ccccc-CCcceeccccCCceeeecCccc
Q 023235 61 KIAFLFLARRELPLDFLWGSFFEIADV-----ENFSIFIHSAPGFVF-----DELTT-RSKFFYGRQLSNSIQVAWGESS 129 (285)
Q Consensus 61 KiAfLiLah~~~~~~~l~~rl~~~ld~-----~~~~IyIHvD~k~~~-----~~~~~-~~~vf~~r~I~~rv~V~WGg~S 129 (285)
|++.+|.++++.+. +.+.++++.. ..+.|+|--|.+.+- +.... ...+. .+.+. +-+
T Consensus 1 ~~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~---~i~~~------~~~ 68 (249)
T cd02525 1 FVSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIR---LIDNP------KRI 68 (249)
T ss_pred CEEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEE---EEeCC------CCC
Confidence 47888999998865 5555555421 356777766655431 11100 11111 22211 112
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 023235 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLM 171 (285)
Q Consensus 130 lV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s~~~I~~fL~ 171 (285)
...|--..++.| ..++++++.+.|.+ +...+.+.+.
T Consensus 69 ~~~a~N~g~~~a----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 69 QSAGLNIGIRNS----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred chHHHHHHHHHh----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 223434444443 67999999999986 5555655553
No 18
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.77 E-value=4.6e+02 Score=21.51 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=45.0
Q ss_pred CeEEEEEEeCCCC-ChHHHHHHhhhhcC---CCceEEEEEeCCCCCc--ccc-----ccCCcceeccccCCceeeecCcc
Q 023235 60 AKIAFLFLARREL-PLDFLWGSFFEIAD---VENFSIFIHSAPGFVF--DEL-----TTRSKFFYGRQLSNSIQVAWGES 128 (285)
Q Consensus 60 ~KiAfLiLah~~~-~~~~l~~rl~~~ld---~~~~~IyIHvD~k~~~--~~~-----~~~~~vf~~r~I~~rv~V~WGg~ 128 (285)
|++.++|.++++. +. +++.++++- ...+.|.|--|...+- +.. .....+. .+... +..
T Consensus 1 p~vsiii~~~n~~~~~---l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~---~~~~~-----~~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKY---LREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIK---VVFRE-----ENG 69 (202)
T ss_pred CeEEEEEecccCcHHH---HHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEE---EEEcc-----cCC
Confidence 4688999999988 65 555555542 2456676665554321 110 0111111 11100 122
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccC
Q 023235 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPI 160 (285)
Q Consensus 129 SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL 160 (285)
+...|--..++.| ..+|+.++...|.+-
T Consensus 70 g~~~a~n~g~~~a----~~d~i~~ld~D~~~~ 97 (202)
T cd04184 70 GISAATNSALELA----TGEFVALLDHDDELA 97 (202)
T ss_pred CHHHHHHHHHHhh----cCCEEEEECCCCcCC
Confidence 3444544455543 458899998888773
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=20.77 E-value=5.8e+02 Score=24.40 Aligned_cols=101 Identities=9% Similarity=0.027 Sum_probs=52.6
Q ss_pred CCCCeEEEEEEeCCCCChHHHHHHhhhhc---CCCceEEEEEeCCCCCcc-c----cc-cCCcceeccccCCceeeecCc
Q 023235 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-E----LT-TRSKFFYGRQLSNSIQVAWGE 127 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~~~l~~rl~~~l---d~~~~~IyIHvD~k~~~~-~----~~-~~~~vf~~r~I~~rv~V~WGg 127 (285)
...++++.+|-+|++.+. +.+.++++ +.+.+.|+|=-|.+.+-. + .. ...++. .+.. -..+|
T Consensus 51 ~~~p~vsViIp~yne~~~---i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~---~i~~---~~n~G 121 (420)
T PRK11204 51 KEYPGVSILVPCYNEGEN---VEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLR---VIHL---AENQG 121 (420)
T ss_pred CCCCCEEEEEecCCCHHH---HHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEE---EEEc---CCCCC
Confidence 345789999999998764 44444433 345778887555443211 0 00 111111 1110 11222
Q ss_pred ccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc
Q 023235 128 SSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMA 172 (285)
Q Consensus 128 ~SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~ 172 (285)
...| +..+++..+.++++.+-.+++|-.+ .+++.+.+++
T Consensus 122 --ka~a----ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 122 --KANA----LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred --HHHH----HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 2333 2333333567999999888887433 2344455543
Done!