Query 023235
Match_columns 285
No_of_seqs 178 out of 555
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 5.8E-40 2E-44 315.9 12.2 190 58-259 82-293 (391)
2 1qg8_A Protein (spore coat pol 42.7 1.4E+02 0.0048 24.5 9.5 109 60-178 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 38.1 72 0.0025 28.3 6.9 77 59-163 64-146 (287)
4 4fix_A UDP-galactofuranosyl tr 27.0 67 0.0023 32.1 5.2 112 57-173 177-296 (657)
5 3ckj_A Putative uncharacterize 18.7 4.7E+02 0.016 22.8 10.7 113 57-178 45-166 (329)
6 2z86_A Chondroitin synthase; G 16.5 6E+02 0.021 24.1 9.5 102 59-174 92-203 (625)
7 1iio_A Conserved hypothetical 12.9 48 0.0016 24.8 0.3 21 152-172 60-80 (84)
8 3bcv_A Putative glycosyltransf 12.9 5.2E+02 0.018 20.5 8.4 99 58-172 3-111 (240)
9 3arc_T Photosystem II reaction 12.1 1.9E+02 0.0065 17.7 2.8 17 20-36 4-20 (32)
10 2z86_A Chondroitin synthase; G 11.0 9.7E+02 0.033 22.6 9.7 99 59-173 374-482 (625)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=5.8e-40 Score=315.92 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=151.3
Q ss_pred CCCeEEEEEEeCCCCChHHHHHHhhhhcCCCceEEEEEeCCCCCcc--ccc-cCCcceeccc-cCCceeeecCcccHHHH
Q 023235 58 GPAKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELT-TRSKFFYGRQ-LSNSIQVAWGESSMIAA 133 (285)
Q Consensus 58 ~~~KiAfLiLah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~--~~~-~~~~vf~~r~-I~~rv~V~WGg~SlV~A 133 (285)
.++||||||++|+++++ |+||+++++++++.||||+|++++.. ... .....|.|++ +++|+.|.|||+|||+|
T Consensus 82 ~~~kiAflil~h~d~~~---l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A 158 (391)
T 2gak_A 82 VGFPIAYSIVVHHKIEM---LDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKA 158 (391)
T ss_dssp HTSCEEEEEEECSCHHH---HHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHH
T ss_pred cCCCEEEEEEecCCHHH---HHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHH
Confidence 35899999999999988 99999999999999999999998632 111 1122344444 45899999999999999
Q ss_pred HHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCCceeccccCC--CCcc--CCC-----C-----C--C
Q 023235 134 ERLLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMA-SPRSFVDSFLDRK--ESRY--NPK-----M-----S--P 195 (285)
Q Consensus 134 tl~LL~~AL~d-~~~~yf~LLSGsD~PL~s~~~I~~fL~~-~~~sFI~~~~~~~--~~RY--~~~-----m-----~--p 195 (285)
|++||+.||++ .+|+|||||||+|+||+|+++|++||+. +++|||+++.+++ ..|+ +.. + . +
T Consensus 159 ~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~ 238 (391)
T 2gak_A 159 DLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAP 238 (391)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEEEEEEEECCC
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccceeeecccccC
Confidence 99999999985 5999999999999999999999999998 5799999876542 2342 210 0 0 1
Q ss_pred CCCCCcccccCceeeecHHHHHHhhcCcchHHHHhhhcCCCCCCccccCCCCccchhHhhhhhh
Q 023235 196 TIPKGKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMCDYIRQRVSLL 259 (285)
Q Consensus 196 ~i~~~~~~~GSQW~sLtR~~a~yIl~d~~~~~~Fk~~c~d~~~~d~~e~~~~~e~~l~tl~~~~ 259 (285)
.+...++++|||||+|||++|++|++|.. .+.|..+|.+.++ +||+|++|++.++
T Consensus 239 ~P~~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~--------pDE~ffqTll~~~ 293 (391)
T 2gak_A 239 PPLKTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYS--------PDEFLWATIQRIP 293 (391)
T ss_dssp CSCSSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSS--------GGGTHHHHHTTST
T ss_pred CccccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcC--------CchhHHHHHhhcc
Confidence 12367899999999999999999999854 5666677766554 6789999998764
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=42.65 E-value=1.4e+02 Score=24.48 Aligned_cols=109 Identities=9% Similarity=0.101 Sum_probs=57.8
Q ss_pred CeEEEEEEeCCCCChHHHHHHhhhhc---CCCceEEEEEeCCCCCc-----cccccCCcceeccccCCce---eeecCcc
Q 023235 60 AKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVF-----DELTTRSKFFYGRQLSNSI---QVAWGES 128 (285)
Q Consensus 60 ~KiAfLiLah~~~~~~~l~~rl~~~l---d~~~~~IyIHvD~k~~~-----~~~~~~~~vf~~r~I~~rv---~V~WGg~ 128 (285)
|++..+|.+++..+. +.+.++++ ..+.+.|.|=-|.+.+- +......++- .+.... ...+...
T Consensus 1 p~vSViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~---~i~~~~~~~~~~~~n~ 74 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDY---VAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVR---FYQSDISGVKERTEKT 74 (255)
T ss_dssp CCEEEEEEESSCTTT---HHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEE---EEECCCCSHHHHHSSC
T ss_pred CeEEEEEEcCCCHHH---HHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEE---EEeccccccccccccc
Confidence 579999999998865 55555544 22467777755554321 1110111111 111100 0001234
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC-CCCce
Q 023235 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS-PRSFV 178 (285)
Q Consensus 129 SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~~-~~sFI 178 (285)
+...|--.+++.| +.+|+.++.+.|++-.+ .+.+.+.+.++ +...+
T Consensus 75 G~~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 75 RYAALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 5555655566654 56899999999997533 34455566554 34443
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=38.07 E-value=72 Score=28.33 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCeEEEEEEeCCCCChHHHHHHhhhhcC------CCceEEEEEeCCCCCccccccCCcceeccccCCceeeecCcccHHH
Q 023235 59 PAKIAFLFLARRELPLDFLWGSFFEIAD------VENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIA 132 (285)
Q Consensus 59 ~~KiAfLiLah~~~~~~~l~~rl~~~ld------~~~~~IyIHvD~k~~~~~~~~~~~vf~~r~I~~rv~V~WGg~SlV~ 132 (285)
.++++.+|-+++..+. +.+.++++. ...+.|+|=-| ..+ . +++...
T Consensus 64 ~~~VSIIIP~yN~~~~---L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d--------~----------------~f~~a~ 115 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQEH---LKYWLYYLHPVLQRQQLDYGIYVINQ-AGD--------T----------------IFNRAK 115 (287)
T ss_dssp SCEEEEEEEESSCHHH---HHHHHHHHHHHHHHTTCEEEEEEEEE-CSS--------S----------------CCCHHH
T ss_pred CCcEEEEEeeCCCHHH---HHHHHHHHHHHHHHhcCCceEEEEEe-CCC--------C----------------ccchhh
Confidence 4799999999998765 555555442 34666665323 111 0 112222
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 023235 133 AERLLLEAALEDPANQRFVLLSDSCVPIYNF 163 (285)
Q Consensus 133 Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s~ 163 (285)
|--..+..|++....+|++++-++|+|....
T Consensus 116 a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 116 LLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 2223343455556789999999999998774
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=26.99 E-value=67 Score=32.13 Aligned_cols=112 Identities=11% Similarity=-0.027 Sum_probs=60.7
Q ss_pred CCCCeEEEEEEeCCCCChHHHHHHhhhhcCCC-----ceEEEEEeCCCCCccccccC-CcceeccccCCceeeec-Cccc
Q 023235 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADVE-----NFSIFIHSAPGFVFDELTTR-SKFFYGRQLSNSIQVAW-GESS 129 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~~~l~~rl~~~ld~~-----~~~IyIHvD~k~~~~~~~~~-~~vf~~r~I~~rv~V~W-Gg~S 129 (285)
..++|++.+|.+++..+. +.+.++++-.. ...=.|=||..+.-...... ..... ...+++.+.. +..+
T Consensus 177 ~~~pkVSVVIptYN~~~~---L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~--~~~~~I~vI~~~N~G 251 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPAD---CVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA--RLGSRLSIHDQPNLG 251 (657)
T ss_dssp CSCCCEEEECCBSSCHHH---HHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH--HHGGGEEEEECCCCH
T ss_pred CCCCeEEEEEEecCCHHH---HHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH--hcCCCEEEEECCCCC
Confidence 345899999999998776 77777776432 22123556766531100000 00000 0001222222 1233
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 023235 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS 173 (285)
Q Consensus 130 lV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~~ 173 (285)
.-.|--..++.|....+.+|+++|-.++++-.+ .+.+.+++..+
T Consensus 252 ~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 252 GSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFA 296 (657)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhC
Confidence 444666778888775578999999888887522 23445555544
No 5
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=18.74 E-value=4.7e+02 Score=22.79 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=58.2
Q ss_pred CCCCeEEEEEEeCCCCCh-HHHHHHhhhhcCCCceEEEEEeCCCCCcc--ccc-c-CCccee-ccccCCceeeecCcccH
Q 023235 57 DGPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFD--ELT-T-RSKFFY-GRQLSNSIQVAWGESSM 130 (285)
Q Consensus 57 ~~~~KiAfLiLah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k~~~~--~~~-~-~~~vf~-~r~I~~rv~V~WGg~Sl 130 (285)
...+++..+|-+++.... ...++.+.+..+...+.|.| ||..+.-+ +.. . ...+.. .+.+. +.. ...+.
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~-~~~---~n~G~ 119 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALP-EVP---IRPGK 119 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCT-TSC---CCCSH
T ss_pred ccCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeec-cCC---CCCCH
Confidence 445899999999998765 33444444443333477777 55444211 000 0 111110 00110 011 12235
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCC--ChHHHHHHHhcC-CCCce
Q 023235 131 IAAERLLLEAALEDPANQRFVLLSDSCVPIY--NFSYVYKYLMAS-PRSFV 178 (285)
Q Consensus 131 V~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~--s~~~I~~fL~~~-~~sFI 178 (285)
..|-...++.| ..+|++++.+.|..+. -.+.+.+.+.++ +...+
T Consensus 120 ~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329)
T 3ckj_A 120 GEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329)
T ss_dssp HHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE
T ss_pred HHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEE
Confidence 55655666654 4588999988887332 345666665553 34444
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=16.47 E-value=6e+02 Score=24.11 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=56.0
Q ss_pred CCeEEEEEEeCCCCChHHHHHHhhhhc----CCCceEEEEEeCCCCCcc-----ccccCCcceeccccCCceeeecCccc
Q 023235 59 PAKIAFLFLARRELPLDFLWGSFFEIA----DVENFSIFIHSAPGFVFD-----ELTTRSKFFYGRQLSNSIQVAWGESS 129 (285)
Q Consensus 59 ~~KiAfLiLah~~~~~~~l~~rl~~~l----d~~~~~IyIHvD~k~~~~-----~~~~~~~vf~~r~I~~rv~V~WGg~S 129 (285)
.|++..+|.+++..+. +.+.++++ ....+.|+|--|.+.+-. .......+. .+. ..-.+.+
T Consensus 92 ~p~vsviIp~~n~~~~---l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~---~i~----~~~~~~g 161 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKI---LAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIK---YVR----QKDYGYQ 161 (625)
T ss_dssp CCCEEEEEEESSCHHH---HHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEE---EEE----ECCCSCC
T ss_pred CCcEEEEEecCCcHHH---HHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeE---EEE----eCCCCcc
Confidence 3789999999998654 55555554 223677777666554311 110111111 111 1122334
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcCC
Q 023235 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP 174 (285)
Q Consensus 130 lV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~~~ 174 (285)
...|--..++.| ..++++++.+.|.+-.. .+.+.+.+..++
T Consensus 162 ~~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~ 203 (625)
T 2z86_A 162 LCAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYMELLAVDD 203 (625)
T ss_dssp HHHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHHHHHhcCC
Confidence 555655566654 56899999988888432 234455555444
No 7
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=12.92 E-value=48 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.5
Q ss_pred EecCCCccCCChHHHHHHHhc
Q 023235 152 LLSDSCVPIYNFSYVYKYLMA 172 (285)
Q Consensus 152 LLSGsD~PL~s~~~I~~fL~~ 172 (285)
+|..+|+|+++.+++.+-+.+
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 567899999999999887653
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=12.86 E-value=5.2e+02 Score=20.52 Aligned_cols=99 Identities=6% Similarity=-0.017 Sum_probs=53.0
Q ss_pred CCCeEEEEEEeCCCCChHHHHHHhhhhc---CCCceEEEEEeCCCCCcc-----ccc-cCCcceeccccCCceeeecCcc
Q 023235 58 GPAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-----ELT-TRSKFFYGRQLSNSIQVAWGES 128 (285)
Q Consensus 58 ~~~KiAfLiLah~~~~~~~l~~rl~~~l---d~~~~~IyIHvD~k~~~~-----~~~-~~~~vf~~r~I~~rv~V~WGg~ 128 (285)
..|++..+|.+++..+. +.+.++++ ..+.+.|.|=-|.+.+-. ... ....+. .+. .. ..
T Consensus 3 ~~p~vsViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~---~i~----~~--n~ 70 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKY---LDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIK---VIH----KK--NA 70 (240)
T ss_dssp CCCSEEEEEEESSCTTT---HHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEE---EEE----CC--CC
T ss_pred CCCcEEEEEecCCCHHH---HHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEE---EEE----CC--CC
Confidence 35789999999998875 55555544 224677777545443211 000 111121 221 11 22
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc
Q 023235 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMA 172 (285)
Q Consensus 129 SlV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s-~~~I~~fL~~ 172 (285)
+...|--..++.| .-+|+++|.+.|++-.. .+.+.+.+..
T Consensus 71 G~~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 71 GLGMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp CHHHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 3444544555554 45899999999886433 2344455544
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=12.15 E-value=1.9e+02 Score=17.70 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023235 20 LVTFFCIAFSLVALFRL 36 (285)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (285)
++.++++...|.++|+-
T Consensus 4 ~vYt~ll~~tlgiiFFA 20 (32)
T 3arc_T 4 ITYVFIFACIIALFFFA 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56677777777766654
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=10.98 E-value=9.7e+02 Score=22.59 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=53.9
Q ss_pred CCeEEEEEEeCCCCChHHHHHHhhhhc---CCCceEEEEEeCCCCCcc-----ccc-cCCcceeccccCCceeeecCccc
Q 023235 59 PAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-----ELT-TRSKFFYGRQLSNSIQVAWGESS 129 (285)
Q Consensus 59 ~~KiAfLiLah~~~~~~~l~~rl~~~l---d~~~~~IyIHvD~k~~~~-----~~~-~~~~vf~~r~I~~rv~V~WGg~S 129 (285)
+|+++.+|.+++..+. +.+.++++ ....+.|.|--|.+.+-. +.. ....+. .+. -..+ +
T Consensus 374 ~~~vsiii~~yn~~~~---l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~---~~~----~~n~--G 441 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKY---IVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVR---FIS----QKNK--G 441 (625)
T ss_dssp SCSEEEEEEESSCTTT---HHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEE---EEE----ECCC--C
T ss_pred CCeEEEEEeCCCCHHH---HHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEE---EEe----CCCC--C
Confidence 4789999999998765 55555444 235678877666554311 100 111111 121 1122 3
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCCh-HHHHHHHhcC
Q 023235 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYNF-SYVYKYLMAS 173 (285)
Q Consensus 130 lV~Atl~LL~~AL~d~~~~yf~LLSGsD~PL~s~-~~I~~fL~~~ 173 (285)
...|--..++.| ..+|+.++.+.|++-... +.+.+.+..+
T Consensus 442 ~~~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 442 IGSASNTAVRLC----RGFYIGQLDSDDFLEPDAVELCLDEFRKD 482 (625)
T ss_dssp HHHHHHHHHHHC----CSSEEEECCTTCEECTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc----CCCEEEEECCCcccChhHHHHHHHHHHhC
Confidence 455555556554 458899999998863322 2334445443
Done!