Query 023240
Match_columns 285
No_of_seqs 359 out of 3050
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 99.9 4.4E-27 9.5E-32 207.4 16.4 159 114-284 3-161 (259)
2 PTZ00338 dimethyladenosine tra 99.9 1.9E-26 4.1E-31 209.1 17.1 159 111-284 6-167 (294)
3 PRK00274 ksgA 16S ribosomal RN 99.9 9.8E-26 2.1E-30 202.9 18.6 168 103-284 4-171 (272)
4 PRK14896 ksgA 16S ribosomal RN 99.9 1.1E-23 2.3E-28 188.3 16.9 154 114-284 2-155 (258)
5 TIGR00755 ksgA dimethyladenosi 99.9 1.5E-23 3.3E-28 186.8 17.0 158 114-284 2-159 (253)
6 smart00650 rADc Ribosomal RNA 99.9 5.5E-23 1.2E-27 172.4 15.3 142 130-284 2-143 (169)
7 KOG0820 Ribosomal RNA adenine 99.9 4.2E-23 9E-28 180.0 13.8 160 111-285 28-190 (315)
8 PF00398 RrnaAD: Ribosomal RNA 99.9 1E-21 2.2E-26 176.0 13.5 162 113-284 2-164 (262)
9 COG2518 Pcm Protein-L-isoaspar 99.7 8.7E-17 1.9E-21 137.3 14.7 144 89-245 4-167 (209)
10 PF01135 PCMT: Protein-L-isoas 99.6 2.9E-15 6.2E-20 129.7 12.9 146 87-245 2-170 (209)
11 TIGR00080 pimt protein-L-isoas 99.6 1.2E-14 2.6E-19 126.4 16.4 149 84-244 4-174 (215)
12 PRK13942 protein-L-isoaspartat 99.6 1.7E-14 3.6E-19 125.4 17.0 146 86-244 5-173 (212)
13 COG2263 Predicted RNA methylas 99.6 1.5E-14 3.3E-19 120.9 14.3 132 113-260 15-156 (198)
14 PRK13944 protein-L-isoaspartat 99.6 4.4E-14 9.5E-19 122.1 16.4 145 87-244 2-170 (205)
15 PRK00312 pcm protein-L-isoaspa 99.6 2.3E-13 4.9E-18 118.0 16.5 148 84-244 6-172 (212)
16 PHA03412 putative methyltransf 99.5 1.2E-13 2.5E-18 120.6 11.5 108 104-230 15-127 (241)
17 PF05175 MTS: Methyltransferas 99.5 4.2E-13 9.2E-18 112.6 10.7 89 130-231 20-112 (170)
18 PF12847 Methyltransf_18: Meth 99.4 5E-13 1.1E-17 103.5 9.4 73 141-225 1-78 (112)
19 COG4123 Predicted O-methyltran 99.4 3E-13 6.4E-18 118.9 8.8 88 133-230 36-128 (248)
20 COG2813 RsmC 16S RNA G1207 met 99.4 1.9E-13 4.2E-18 122.5 6.2 91 130-234 147-241 (300)
21 PRK15001 SAM-dependent 23S rib 99.4 2.3E-13 4.9E-18 127.4 6.5 89 129-230 216-311 (378)
22 PRK14967 putative methyltransf 99.4 2.8E-12 6.1E-17 112.1 12.5 92 126-230 21-114 (223)
23 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.3E-12 5.1E-17 123.7 12.8 105 127-239 283-389 (443)
24 COG2226 UbiE Methylase involve 99.4 3.2E-12 6.8E-17 112.3 11.9 87 126-224 36-126 (238)
25 TIGR00537 hemK_rel_arch HemK-r 99.4 4.5E-12 9.8E-17 107.0 12.4 85 131-229 9-94 (179)
26 PF13659 Methyltransf_26: Meth 99.4 1.3E-12 2.8E-17 102.1 8.3 79 142-230 1-83 (117)
27 PRK03522 rumB 23S rRNA methylu 99.4 1.9E-12 4E-17 119.1 10.5 102 127-239 159-263 (315)
28 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5E-12 1.1E-16 108.7 12.4 103 126-239 37-145 (199)
29 TIGR01177 conserved hypothetic 99.4 3.7E-12 7.9E-17 117.8 12.0 95 123-229 164-260 (329)
30 COG2890 HemK Methylase of poly 99.4 2.7E-12 5.9E-17 116.0 10.5 74 144-231 113-190 (280)
31 PHA03411 putative methyltransf 99.4 3.5E-12 7.5E-17 113.8 10.7 93 119-230 45-139 (279)
32 PLN02233 ubiquinone biosynthes 99.4 1.2E-11 2.5E-16 110.8 13.4 132 79-228 17-156 (261)
33 TIGR03533 L3_gln_methyl protei 99.4 5.6E-12 1.2E-16 114.2 11.3 80 137-229 117-201 (284)
34 PRK14966 unknown domain/N5-glu 99.3 7.8E-12 1.7E-16 117.6 11.1 89 129-230 241-332 (423)
35 PF01209 Ubie_methyltran: ubiE 99.3 4.9E-12 1.1E-16 111.4 9.2 87 127-225 33-124 (233)
36 TIGR02085 meth_trns_rumB 23S r 99.3 1.8E-11 3.8E-16 115.1 13.5 106 123-239 211-323 (374)
37 COG2242 CobL Precorrin-6B meth 99.3 2.9E-11 6.2E-16 101.5 13.1 110 123-245 16-133 (187)
38 PRK09489 rsmC 16S ribosomal RN 99.3 1.4E-11 3.1E-16 114.3 12.2 86 130-229 185-273 (342)
39 TIGR02469 CbiT precorrin-6Y C5 99.3 3.8E-11 8.2E-16 94.2 12.8 109 125-244 3-118 (124)
40 PRK08287 cobalt-precorrin-6Y C 99.3 3.5E-11 7.7E-16 102.2 13.3 110 121-244 11-127 (187)
41 KOG0821 Predicted ribosomal RN 99.3 9.4E-12 2E-16 106.3 9.6 177 106-283 15-202 (326)
42 TIGR02752 MenG_heptapren 2-hep 99.3 2.6E-11 5.6E-16 106.2 12.5 92 126-229 30-126 (231)
43 PRK11207 tellurite resistance 99.3 2.8E-11 6.1E-16 103.9 12.4 84 133-229 22-107 (197)
44 TIGR00477 tehB tellurite resis 99.3 2.6E-11 5.6E-16 104.0 12.0 86 132-230 21-107 (195)
45 PTZ00098 phosphoethanolamine N 99.3 2.3E-11 4.9E-16 109.1 11.9 96 118-225 27-125 (263)
46 PRK10258 biotin biosynthesis p 99.3 2.8E-11 6E-16 107.5 12.2 105 126-245 27-137 (251)
47 PRK00107 gidB 16S rRNA methylt 99.3 4E-11 8.8E-16 102.1 12.5 91 141-245 45-142 (187)
48 PRK14968 putative methyltransf 99.3 5.5E-11 1.2E-15 100.3 13.1 87 130-229 12-102 (188)
49 COG2265 TrmA SAM-dependent met 99.3 2.3E-11 4.9E-16 115.8 11.9 121 114-243 266-389 (432)
50 PRK11805 N5-glutamine S-adenos 99.3 2E-11 4.2E-16 111.8 10.9 74 143-229 135-213 (307)
51 PF13847 Methyltransf_31: Meth 99.3 2.6E-11 5.7E-16 99.5 10.4 78 141-229 3-85 (152)
52 TIGR03704 PrmC_rel_meth putati 99.3 3.5E-11 7.6E-16 107.2 11.9 92 127-229 71-165 (251)
53 TIGR00138 gidB 16S rRNA methyl 99.3 3.3E-11 7.2E-16 102.2 11.1 91 141-245 42-139 (181)
54 TIGR00479 rumA 23S rRNA (uraci 99.3 2.5E-11 5.5E-16 116.1 11.4 108 123-238 274-384 (431)
55 TIGR00536 hemK_fam HemK family 99.3 3.3E-11 7.3E-16 109.2 11.6 92 127-231 99-196 (284)
56 COG2227 UbiG 2-polyprenyl-3-me 99.3 1.6E-11 3.5E-16 106.6 8.7 105 108-224 23-131 (243)
57 PRK11088 rrmA 23S rRNA methylt 99.3 1.8E-11 3.8E-16 110.3 9.4 89 141-244 85-178 (272)
58 PLN02244 tocopherol O-methyltr 99.3 7.6E-11 1.6E-15 109.5 13.7 88 128-227 100-196 (340)
59 PRK00377 cbiT cobalt-precorrin 99.3 9.2E-11 2E-15 100.7 13.0 112 122-244 21-141 (198)
60 PRK14103 trans-aconitate 2-met 99.3 2.5E-11 5.4E-16 108.2 9.7 83 130-230 18-102 (255)
61 PRK11036 putative S-adenosyl-L 99.3 4.3E-11 9.3E-16 106.7 11.0 103 131-245 35-146 (255)
62 PRK13943 protein-L-isoaspartat 99.3 7.2E-11 1.6E-15 108.5 12.6 110 123-244 62-177 (322)
63 TIGR03534 RF_mod_PrmC protein- 99.2 6.7E-11 1.5E-15 104.5 11.7 89 127-229 74-166 (251)
64 PRK09328 N5-glutamine S-adenos 99.2 1.6E-10 3.5E-15 103.7 13.5 91 127-230 94-188 (275)
65 COG4106 Tam Trans-aconitate me 99.2 2.3E-11 5E-16 103.7 7.3 99 131-245 20-127 (257)
66 KOG3420 Predicted RNA methylas 99.2 2.1E-11 4.7E-16 97.7 6.6 103 115-230 19-127 (185)
67 PF02353 CMAS: Mycolic acid cy 99.2 1.4E-10 3.1E-15 104.4 12.2 82 128-224 49-134 (273)
68 PRK01544 bifunctional N5-gluta 99.2 8E-11 1.7E-15 114.7 11.1 77 142-231 139-220 (506)
69 COG2230 Cfa Cyclopropane fatty 99.2 8.3E-11 1.8E-15 105.3 10.2 82 129-225 60-145 (283)
70 PRK01683 trans-aconitate 2-met 99.2 1.4E-10 3E-15 103.4 11.3 86 129-230 19-106 (258)
71 PF01170 UPF0020: Putative RNA 99.2 2.2E-10 4.7E-15 97.0 11.4 97 122-230 9-119 (179)
72 COG4122 Predicted O-methyltran 99.2 4.1E-10 8.8E-15 97.7 13.2 113 123-245 41-163 (219)
73 COG2264 PrmA Ribosomal protein 99.2 1E-10 2.2E-15 105.5 9.7 99 113-225 135-237 (300)
74 PF13649 Methyltransf_25: Meth 99.2 1.1E-10 2.3E-15 89.2 8.3 79 145-235 1-87 (101)
75 PRK15128 23S rRNA m(5)C1962 me 99.2 2.6E-10 5.7E-15 107.7 12.7 98 123-230 204-306 (396)
76 PLN02781 Probable caffeoyl-CoA 99.2 1.2E-10 2.6E-15 102.7 9.7 115 124-244 51-174 (234)
77 PRK05031 tRNA (uracil-5-)-meth 99.2 1.6E-10 3.5E-15 108.2 11.1 109 126-240 192-312 (362)
78 TIGR02143 trmA_only tRNA (urac 99.2 1.8E-10 4E-15 107.4 11.3 118 122-240 179-303 (353)
79 PLN02396 hexaprenyldihydroxybe 99.2 7.5E-11 1.6E-15 108.5 8.0 73 141-225 131-206 (322)
80 PRK07402 precorrin-6B methylas 99.2 4.1E-10 8.8E-15 96.5 12.0 76 123-198 22-101 (196)
81 PF08241 Methyltransf_11: Meth 99.2 1.6E-10 3.4E-15 86.0 8.1 72 146-230 1-73 (95)
82 PLN02336 phosphoethanolamine N 99.2 2.1E-10 4.5E-15 111.1 10.9 90 130-229 26-115 (475)
83 TIGR00095 RNA methyltransferas 99.1 6.5E-10 1.4E-14 94.9 12.4 108 123-238 30-144 (189)
84 TIGR02021 BchM-ChlM magnesium 99.1 4.1E-10 8.9E-15 98.0 11.1 82 128-224 40-126 (219)
85 PRK10901 16S rRNA methyltransf 99.1 5.1E-10 1.1E-14 107.0 12.7 96 123-228 226-324 (427)
86 PRK12335 tellurite resistance 99.1 3.6E-10 7.8E-15 102.6 11.0 75 141-228 120-195 (287)
87 PRK15451 tRNA cmo(5)U34 methyl 99.1 8.7E-10 1.9E-14 97.9 12.9 76 140-229 55-137 (247)
88 TIGR00406 prmA ribosomal prote 99.1 6.5E-10 1.4E-14 101.0 12.3 117 114-245 133-256 (288)
89 PRK11727 23S rRNA mA1618 methy 99.1 5E-10 1.1E-14 102.8 11.4 85 141-233 114-205 (321)
90 TIGR00446 nop2p NOL1/NOP2/sun 99.1 9.3E-10 2E-14 98.7 12.8 86 131-228 61-151 (264)
91 KOG2904 Predicted methyltransf 99.1 4.1E-10 8.8E-15 99.2 10.0 99 127-232 131-237 (328)
92 PRK00121 trmB tRNA (guanine-N( 99.1 4.7E-10 1E-14 96.7 10.3 76 141-226 40-120 (202)
93 PRK04266 fibrillarin; Provisio 99.1 6.9E-10 1.5E-14 97.3 11.4 102 135-245 66-173 (226)
94 PF03602 Cons_hypoth95: Conser 99.1 8E-10 1.7E-14 93.9 11.1 122 124-253 23-153 (183)
95 PF06325 PrmA: Ribosomal prote 99.1 3E-10 6.5E-15 103.1 9.0 104 114-234 135-242 (295)
96 PLN02672 methionine S-methyltr 99.1 3.7E-10 7.9E-15 117.2 10.7 96 124-230 96-216 (1082)
97 PF02384 N6_Mtase: N-6 DNA Met 99.1 7.6E-10 1.6E-14 101.4 11.7 105 115-230 21-138 (311)
98 TIGR03587 Pse_Me-ase pseudamin 99.1 7.6E-10 1.6E-14 95.6 11.0 72 140-227 42-115 (204)
99 KOG1270 Methyltransferases [Co 99.1 2.6E-10 5.6E-15 100.0 8.1 104 142-260 90-217 (282)
100 PLN02476 O-methyltransferase 99.1 1.7E-09 3.6E-14 97.3 13.3 117 123-245 100-225 (278)
101 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.7E-10 1.2E-14 95.5 9.8 77 141-226 16-96 (194)
102 PF05958 tRNA_U5-meth_tr: tRNA 99.1 3.7E-10 8E-15 105.4 8.7 121 116-237 172-299 (352)
103 COG1041 Predicted DNA modifica 99.1 8.8E-10 1.9E-14 100.9 10.7 97 123-231 179-278 (347)
104 PLN02336 phosphoethanolamine N 99.1 1.2E-09 2.7E-14 105.7 12.4 97 119-227 242-342 (475)
105 PRK05785 hypothetical protein; 99.1 9.2E-10 2E-14 96.6 10.2 71 141-229 51-122 (226)
106 PF03848 TehB: Tellurite resis 99.1 1.4E-09 3.1E-14 92.6 10.9 79 133-224 22-101 (192)
107 PRK14902 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 104.8 11.9 93 125-228 234-331 (444)
108 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.8E-09 6E-14 99.8 13.2 87 132-228 113-203 (390)
109 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.2E-09 2.7E-14 110.4 11.4 94 123-229 522-620 (702)
110 PF08704 GCD14: tRNA methyltra 99.0 1.5E-09 3.3E-14 96.0 10.6 108 126-242 25-141 (247)
111 PRK11873 arsM arsenite S-adeno 99.0 1.6E-09 3.5E-14 97.4 10.9 80 137-228 73-157 (272)
112 KOG1661 Protein-L-isoaspartate 99.0 2.8E-09 6.1E-14 90.6 11.6 113 121-245 60-191 (237)
113 PRK11705 cyclopropane fatty ac 99.0 2.4E-09 5.3E-14 100.9 12.5 84 129-228 155-239 (383)
114 TIGR00740 methyltransferase, p 99.0 1.5E-09 3.2E-14 95.8 10.4 75 141-229 53-134 (239)
115 PLN02585 magnesium protoporphy 99.0 1.4E-09 3.1E-14 99.8 10.6 84 127-225 127-220 (315)
116 PRK04148 hypothetical protein; 99.0 2.1E-09 4.6E-14 86.2 10.1 91 129-235 4-96 (134)
117 KOG1271 Methyltransferases [Ge 99.0 1.5E-09 3.2E-14 90.5 9.1 149 100-253 24-186 (227)
118 PRK14903 16S rRNA methyltransf 99.0 3E-09 6.4E-14 101.9 12.7 95 123-228 219-318 (431)
119 TIGR03840 TMPT_Se_Te thiopurin 99.0 3.8E-09 8.2E-14 91.9 12.2 68 133-200 26-107 (213)
120 PF01596 Methyltransf_3: O-met 99.0 1.6E-09 3.5E-14 93.5 9.6 114 125-244 29-151 (205)
121 PRK14904 16S rRNA methyltransf 99.0 3.3E-09 7.2E-14 102.0 12.6 89 127-228 236-329 (445)
122 PRK07580 Mg-protoporphyrin IX 99.0 3.7E-09 8E-14 92.3 11.7 85 128-227 47-137 (230)
123 PRK06922 hypothetical protein; 99.0 2.5E-09 5.4E-14 105.4 11.2 82 137-228 414-498 (677)
124 PRK14901 16S rRNA methyltransf 99.0 4.1E-09 8.9E-14 101.0 12.5 98 123-228 234-336 (434)
125 PF07021 MetW: Methionine bios 99.0 7.6E-10 1.7E-14 93.5 6.6 94 132-242 6-103 (193)
126 PLN02490 MPBQ/MSBQ methyltrans 99.0 3.8E-09 8.3E-14 97.7 11.6 90 126-228 97-189 (340)
127 PRK15068 tRNA mo(5)U34 methylt 99.0 2.5E-09 5.5E-14 98.6 10.3 81 131-224 112-196 (322)
128 TIGR02072 BioC biotin biosynth 99.0 3.7E-09 8E-14 92.2 10.9 88 128-229 18-110 (240)
129 PRK13255 thiopurine S-methyltr 99.0 5.2E-09 1.1E-13 91.3 11.7 76 137-223 33-122 (218)
130 PRK00517 prmA ribosomal protei 99.0 3.6E-09 7.8E-14 94.1 10.9 88 140-244 118-209 (250)
131 PRK08317 hypothetical protein; 99.0 6.3E-09 1.4E-13 90.6 12.0 89 128-228 6-98 (241)
132 TIGR00452 methyltransferase, p 99.0 7.4E-09 1.6E-13 95.0 12.8 94 119-226 95-197 (314)
133 KOG1540 Ubiquinone biosynthesi 99.0 2.5E-08 5.5E-13 87.3 15.2 75 129-203 88-175 (296)
134 TIGR02987 met_A_Alw26 type II 99.0 2.1E-09 4.7E-14 105.3 9.7 105 118-230 2-125 (524)
135 PF09445 Methyltransf_15: RNA 99.0 1.3E-09 2.9E-14 90.4 6.8 80 143-231 1-83 (163)
136 PF05401 NodS: Nodulation prot 99.0 1.9E-09 4.1E-14 91.4 7.7 82 136-230 38-120 (201)
137 COG2519 GCD14 tRNA(1-methylade 99.0 3.7E-09 7.9E-14 92.7 9.7 105 127-244 80-192 (256)
138 PRK00216 ubiE ubiquinone/menaq 99.0 1.2E-08 2.7E-13 89.0 12.8 89 126-226 36-130 (239)
139 PRK06202 hypothetical protein; 98.9 4.8E-09 1E-13 92.1 10.0 78 140-230 59-142 (232)
140 PF02475 Met_10: Met-10+ like- 98.9 3.4E-09 7.4E-14 91.0 8.6 104 112-228 72-180 (200)
141 COG3963 Phospholipid N-methylt 98.9 1.3E-08 2.8E-13 83.8 11.4 102 114-227 21-127 (194)
142 PRK05134 bifunctional 3-demeth 98.9 1.3E-08 2.7E-13 89.3 11.6 91 126-227 33-124 (233)
143 TIGR00563 rsmB ribosomal RNA s 98.9 1.5E-08 3.2E-13 97.0 12.9 96 123-228 220-320 (426)
144 KOG1541 Predicted protein carb 98.9 5.6E-09 1.2E-13 89.5 8.7 86 123-223 30-118 (270)
145 KOG3191 Predicted N6-DNA-methy 98.9 8.3E-09 1.8E-13 85.9 9.4 82 137-231 39-124 (209)
146 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 2.2E-08 4.7E-13 86.5 12.5 89 127-227 25-116 (223)
147 COG0742 N6-adenine-specific me 98.9 2.2E-08 4.7E-13 84.6 11.8 98 124-230 24-127 (187)
148 PLN02589 caffeoyl-CoA O-methyl 98.9 6.5E-09 1.4E-13 92.2 9.0 117 124-245 62-187 (247)
149 TIGR02081 metW methionine bios 98.9 9.1E-09 2E-13 87.9 9.0 93 132-242 6-103 (194)
150 PRK11188 rrmJ 23S rRNA methylt 98.9 2.4E-08 5.3E-13 86.5 11.3 73 140-225 50-125 (209)
151 COG0116 Predicted N6-adenine-s 98.9 1.3E-08 2.7E-13 94.5 9.9 95 123-229 173-311 (381)
152 PRK00811 spermidine synthase; 98.9 2E-08 4.3E-13 91.0 11.1 74 141-225 76-158 (283)
153 PRK04338 N(2),N(2)-dimethylgua 98.8 2.1E-08 4.5E-13 94.5 11.2 106 118-236 33-143 (382)
154 PLN03075 nicotianamine synthas 98.8 3.6E-08 7.7E-13 89.3 11.5 84 129-224 111-202 (296)
155 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2.8E-08 6.1E-13 100.6 11.9 98 123-230 171-316 (702)
156 TIGR01983 UbiG ubiquinone bios 98.8 2.5E-08 5.3E-13 86.7 10.0 90 126-226 26-121 (224)
157 smart00828 PKS_MT Methyltransf 98.8 2.8E-08 6E-13 86.5 9.0 70 143-225 1-75 (224)
158 PF08242 Methyltransf_12: Meth 98.8 8.6E-10 1.9E-14 83.7 -0.6 75 146-230 1-79 (99)
159 PRK04457 spermidine synthase; 98.8 4.3E-08 9.3E-13 87.9 10.2 86 129-225 53-144 (262)
160 KOG2187 tRNA uracil-5-methyltr 98.8 2.4E-08 5.2E-13 95.0 8.6 122 113-240 355-479 (534)
161 PTZ00146 fibrillarin; Provisio 98.8 6.5E-08 1.4E-12 87.4 11.1 99 137-245 128-234 (293)
162 COG2520 Predicted methyltransf 98.8 2.4E-08 5.2E-13 92.0 8.4 94 132-239 181-281 (341)
163 PRK00050 16S rRNA m(4)C1402 me 98.7 4.8E-08 1E-12 88.7 9.1 92 127-226 5-99 (296)
164 TIGR00438 rrmJ cell division p 98.7 6E-08 1.3E-12 82.4 9.0 75 138-225 29-106 (188)
165 TIGR02716 C20_methyl_CrtF C-20 98.7 1.7E-07 3.6E-12 85.8 11.5 71 129-200 137-212 (306)
166 PF13489 Methyltransf_23: Meth 98.7 1.4E-07 3E-12 77.1 9.9 72 139-230 20-91 (161)
167 TIGR03438 probable methyltrans 98.7 2.1E-07 4.6E-12 85.0 11.7 67 131-199 55-127 (301)
168 COG1092 Predicted SAM-dependen 98.7 7.8E-08 1.7E-12 90.4 8.6 95 123-227 201-300 (393)
169 smart00138 MeTrc Methyltransfe 98.7 1.1E-07 2.4E-12 85.3 9.0 73 140-224 98-210 (264)
170 PRK03612 spermidine synthase; 98.7 1.2E-07 2.7E-12 92.9 10.1 78 140-228 296-384 (521)
171 cd02440 AdoMet_MTases S-adenos 98.6 1.4E-07 3.1E-12 69.8 8.1 75 144-229 1-78 (107)
172 PRK01581 speE spermidine synth 98.6 1.4E-07 3E-12 87.6 9.5 78 139-227 148-236 (374)
173 PF05724 TPMT: Thiopurine S-me 98.6 1.2E-07 2.6E-12 82.7 8.5 75 126-201 23-111 (218)
174 PLN02366 spermidine synthase 98.6 3.7E-07 8E-12 83.6 12.0 77 140-226 90-174 (308)
175 TIGR00417 speE spermidine synt 98.6 2.7E-07 5.8E-12 83.1 10.6 77 140-227 71-155 (270)
176 PRK13256 thiopurine S-methyltr 98.6 8.1E-07 1.8E-11 77.8 13.0 75 125-200 28-116 (226)
177 PRK10742 putative methyltransf 98.6 3.3E-07 7.2E-12 80.7 9.4 88 132-230 77-177 (250)
178 PF08003 Methyltransf_9: Prote 98.5 5.3E-07 1.2E-11 81.4 10.1 105 131-248 105-220 (315)
179 PF10672 Methyltrans_SAM: S-ad 98.5 5.3E-07 1.1E-11 81.6 10.0 89 127-227 112-205 (286)
180 KOG1500 Protein arginine N-met 98.5 2.8E-07 6.2E-12 83.5 7.5 92 140-245 176-280 (517)
181 KOG2730 Methylase [General fun 98.5 1.6E-07 3.5E-12 80.5 5.6 105 120-232 72-180 (263)
182 KOG1499 Protein arginine N-met 98.5 5.4E-07 1.2E-11 82.4 9.0 72 140-224 59-134 (346)
183 COG0220 Predicted S-adenosylme 98.5 2.5E-07 5.3E-12 81.1 6.5 76 142-226 49-128 (227)
184 COG2521 Predicted archaeal met 98.5 1.5E-07 3.3E-12 81.5 5.0 101 134-244 127-242 (287)
185 PF02390 Methyltransf_4: Putat 98.4 8.4E-07 1.8E-11 76.1 8.5 76 142-226 18-97 (195)
186 TIGR00308 TRM1 tRNA(guanine-26 98.4 1.3E-06 2.9E-11 82.0 10.3 82 143-236 46-132 (374)
187 KOG4300 Predicted methyltransf 98.4 8.2E-07 1.8E-11 75.6 7.1 73 143-226 78-154 (252)
188 TIGR00478 tly hemolysin TlyA f 98.4 2E-06 4.3E-11 75.5 9.8 48 131-178 64-113 (228)
189 KOG2915 tRNA(1-methyladenosine 98.4 3.8E-06 8.3E-11 74.3 11.1 106 130-245 94-207 (314)
190 PF05185 PRMT5: PRMT5 arginine 98.4 2.6E-06 5.6E-11 81.9 10.6 72 142-226 187-267 (448)
191 COG0286 HsdM Type I restrictio 98.4 3.2E-06 6.9E-11 82.3 11.0 105 116-228 162-275 (489)
192 PF10294 Methyltransf_16: Puta 98.3 6.2E-06 1.3E-10 69.4 9.3 96 139-243 43-151 (173)
193 PLN02823 spermine synthase 98.3 6.2E-06 1.4E-10 76.4 10.2 74 141-225 103-184 (336)
194 PF05971 Methyltransf_10: Prot 98.3 8E-06 1.7E-10 74.1 10.5 99 130-235 86-195 (299)
195 PF08123 DOT1: Histone methyla 98.2 2.8E-06 6E-11 73.4 6.5 94 125-227 26-133 (205)
196 KOG2671 Putative RNA methylase 98.2 2.3E-06 5E-11 77.9 6.0 114 108-233 176-300 (421)
197 PRK11933 yebU rRNA (cytosine-C 98.2 7.7E-06 1.7E-10 79.0 10.0 93 123-226 93-192 (470)
198 COG4976 Predicted methyltransf 98.2 9.9E-07 2.1E-11 76.3 3.4 111 125-248 109-225 (287)
199 TIGR00006 S-adenosyl-methyltra 98.2 1.4E-05 3E-10 72.9 11.0 97 123-226 2-101 (305)
200 COG4076 Predicted RNA methylas 98.2 2.5E-06 5.5E-11 71.7 5.6 60 142-201 33-94 (252)
201 KOG3010 Methyltransferase [Gen 98.1 6.5E-06 1.4E-10 71.8 6.4 89 144-244 36-133 (261)
202 KOG1663 O-methyltransferase [S 98.1 2.9E-05 6.3E-10 67.4 9.8 116 123-244 55-179 (237)
203 PRK01544 bifunctional N5-gluta 98.1 2.6E-05 5.7E-10 76.3 10.7 76 141-226 347-426 (506)
204 PRK11760 putative 23S rRNA C24 98.0 3.9E-05 8.5E-10 70.6 10.3 93 140-251 210-305 (357)
205 PF05219 DREV: DREV methyltran 98.0 3.8E-05 8.3E-10 68.0 9.5 115 118-251 66-192 (265)
206 PF13679 Methyltransf_32: Meth 98.0 4E-05 8.8E-10 62.1 8.7 59 140-198 24-93 (141)
207 TIGR01444 fkbM_fam methyltrans 97.9 2.6E-05 5.7E-10 62.8 6.6 55 144-198 1-59 (143)
208 COG0144 Sun tRNA and rRNA cyto 97.8 0.00012 2.7E-09 68.4 10.3 96 123-227 138-239 (355)
209 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00022 4.8E-09 64.7 9.3 96 123-228 67-167 (283)
210 KOG2361 Predicted methyltransf 97.7 0.00011 2.3E-09 64.3 6.2 114 123-244 50-179 (264)
211 COG3897 Predicted methyltransf 97.6 0.00013 2.8E-09 61.9 6.4 89 127-230 65-156 (218)
212 PF01795 Methyltransf_5: MraW 97.6 0.00028 6E-09 64.5 8.8 95 127-227 6-103 (310)
213 PF01564 Spermine_synth: Sperm 97.6 0.00041 8.8E-09 61.7 9.6 75 141-226 76-159 (246)
214 PF00891 Methyltransf_2: O-met 97.6 0.00044 9.6E-09 60.9 9.7 63 131-198 90-154 (241)
215 PF02527 GidB: rRNA small subu 97.5 0.00057 1.2E-08 58.1 8.9 68 144-224 51-122 (184)
216 PRK00536 speE spermidine synth 97.5 0.00087 1.9E-08 60.0 10.1 90 140-244 71-167 (262)
217 COG0357 GidB Predicted S-adeno 97.5 0.00046 1E-08 59.9 8.0 89 142-243 68-163 (215)
218 KOG2899 Predicted methyltransf 97.5 0.0002 4.4E-09 62.7 5.5 46 141-186 58-105 (288)
219 COG0421 SpeE Spermidine syntha 97.5 0.00071 1.5E-08 61.3 9.3 72 142-224 77-156 (282)
220 PF01728 FtsJ: FtsJ-like methy 97.5 0.00023 5.1E-09 59.8 5.7 74 141-225 23-99 (181)
221 PF04445 SAM_MT: Putative SAM- 97.5 0.00028 6.1E-09 61.9 6.2 87 132-229 64-163 (234)
222 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00051 1.1E-08 63.7 8.2 82 141-228 62-156 (331)
223 PF01861 DUF43: Protein of unk 97.4 0.0019 4.2E-08 56.7 11.1 109 112-230 13-125 (243)
224 PF04816 DUF633: Family of unk 97.4 0.00073 1.6E-08 58.4 8.1 55 145-199 1-60 (205)
225 cd00315 Cyt_C5_DNA_methylase C 97.3 0.00067 1.5E-08 61.2 7.5 74 144-231 2-76 (275)
226 COG0275 Predicted S-adenosylme 97.3 0.0027 5.9E-08 57.5 10.3 95 124-225 6-104 (314)
227 PF01269 Fibrillarin: Fibrilla 97.3 0.0026 5.5E-08 55.3 9.8 100 137-245 69-175 (229)
228 PF01555 N6_N4_Mtase: DNA meth 97.2 0.0014 3E-08 56.4 7.5 58 123-181 174-231 (231)
229 PRK11524 putative methyltransf 97.2 0.0015 3.2E-08 59.3 8.0 59 125-184 193-251 (284)
230 COG1189 Predicted rRNA methyla 97.2 0.003 6.6E-08 55.3 9.3 90 132-234 69-161 (245)
231 COG3129 Predicted SAM-dependen 97.1 0.0022 4.8E-08 55.9 7.7 102 127-235 58-171 (292)
232 PLN02232 ubiquinone biosynthes 97.0 0.0012 2.7E-08 54.6 5.4 50 167-228 1-55 (160)
233 PF05891 Methyltransf_PK: AdoM 97.0 0.003 6.4E-08 54.8 7.6 71 142-224 56-129 (218)
234 PF09243 Rsm22: Mitochondrial 97.0 0.0046 1E-07 55.8 9.0 47 141-187 33-82 (274)
235 PHA01634 hypothetical protein 96.9 0.0022 4.7E-08 50.9 5.5 46 141-186 28-74 (156)
236 KOG1975 mRNA cap methyltransfe 96.9 0.0025 5.5E-08 58.1 6.7 81 140-226 116-205 (389)
237 KOG1501 Arginine N-methyltrans 96.9 0.0016 3.4E-08 61.6 5.6 57 144-200 69-129 (636)
238 PRK13699 putative methylase; P 96.9 0.0041 8.8E-08 54.6 7.9 61 124-185 147-207 (227)
239 PF06080 DUF938: Protein of un 96.9 0.0064 1.4E-07 52.3 8.6 79 142-224 26-109 (204)
240 COG0293 FtsJ 23S rRNA methylas 96.8 0.0058 1.3E-07 52.6 7.8 74 140-226 44-120 (205)
241 PF07942 N2227: N2227-like pro 96.8 0.031 6.8E-07 50.3 12.7 40 141-180 56-95 (270)
242 KOG4058 Uncharacterized conser 96.8 0.003 6.5E-08 51.4 5.5 75 127-201 58-136 (199)
243 PF00145 DNA_methylase: C-5 cy 96.8 0.004 8.6E-08 56.7 7.0 68 144-226 2-70 (335)
244 KOG2940 Predicted methyltransf 96.7 0.0019 4.1E-08 56.3 4.3 78 142-231 73-151 (325)
245 TIGR03439 methyl_EasF probable 96.7 0.012 2.5E-07 54.4 9.4 66 132-199 69-144 (319)
246 PF04989 CmcI: Cephalosporin h 96.6 0.0041 8.8E-08 53.6 5.7 106 117-226 8-120 (206)
247 PF03059 NAS: Nicotianamine sy 96.6 0.034 7.3E-07 50.2 11.8 86 142-239 121-218 (276)
248 PF12147 Methyltransf_20: Puta 96.6 0.066 1.4E-06 48.5 13.0 60 140-199 134-200 (311)
249 COG2384 Predicted SAM-dependen 96.5 0.015 3.2E-07 50.4 8.2 58 141-198 16-78 (226)
250 PF01739 CheR: CheR methyltran 96.5 0.021 4.5E-07 49.0 9.0 41 141-181 31-82 (196)
251 COG0500 SmtA SAM-dependent met 96.4 0.037 8E-07 42.5 9.6 71 145-227 52-129 (257)
252 TIGR00675 dcm DNA-methyltransf 96.4 0.0066 1.4E-07 55.9 5.9 67 145-226 1-68 (315)
253 KOG1122 tRNA and rRNA cytosine 96.4 0.01 2.2E-07 55.9 7.1 85 134-228 234-323 (460)
254 PF03141 Methyltransf_29: Puta 96.4 0.0068 1.5E-07 58.4 6.0 80 127-211 99-187 (506)
255 PF07091 FmrO: Ribosomal RNA m 96.4 0.012 2.7E-07 52.0 7.1 60 141-200 105-167 (251)
256 TIGR00497 hsdM type I restrict 96.3 0.018 3.9E-07 56.4 8.8 98 122-229 196-305 (501)
257 KOG1227 Putative methyltransfe 96.2 0.0047 1E-07 55.8 3.7 91 141-244 194-292 (351)
258 COG1889 NOP1 Fibrillarin-like 96.2 0.034 7.4E-07 47.7 8.7 96 138-242 73-174 (231)
259 PF11599 AviRa: RRNA methyltra 96.2 0.011 2.4E-07 51.0 5.7 63 123-185 29-99 (246)
260 COG4262 Predicted spermidine s 96.1 0.02 4.2E-07 53.3 7.4 75 141-226 289-374 (508)
261 KOG2078 tRNA modification enzy 96.1 0.0039 8.5E-08 58.7 2.7 81 117-199 225-311 (495)
262 PRK10611 chemotaxis methyltran 96.1 0.031 6.8E-07 50.8 8.5 60 123-182 96-166 (287)
263 PRK10458 DNA cytosine methylas 96.0 0.055 1.2E-06 52.5 10.2 86 143-228 89-180 (467)
264 KOG4589 Cell division protein 95.9 0.03 6.5E-07 47.5 6.7 74 141-227 69-146 (232)
265 PF05148 Methyltransf_8: Hypot 95.8 0.047 1E-06 47.2 7.8 92 127-244 57-154 (219)
266 KOG2912 Predicted DNA methylas 95.8 0.022 4.7E-07 52.0 6.0 81 145-230 106-191 (419)
267 COG0270 Dcm Site-specific DNA 95.8 0.031 6.8E-07 51.7 7.3 73 142-227 3-77 (328)
268 KOG3045 Predicted RNA methylas 95.6 0.045 9.8E-07 48.7 7.0 93 125-245 163-261 (325)
269 KOG1596 Fibrillarin and relate 95.5 0.032 7E-07 49.1 5.8 100 136-244 151-257 (317)
270 PF13578 Methyltransf_24: Meth 95.4 0.01 2.2E-07 45.2 2.0 71 146-227 1-79 (106)
271 KOG3987 Uncharacterized conser 95.2 0.0074 1.6E-07 51.9 1.0 74 109-182 77-153 (288)
272 COG3510 CmcI Cephalosporin hyd 95.1 0.19 4.1E-06 42.9 9.0 82 117-201 45-132 (237)
273 COG1064 AdhP Zn-dependent alco 94.5 0.3 6.5E-06 45.4 9.5 92 137-244 162-256 (339)
274 KOG2651 rRNA adenine N-6-methy 94.4 0.14 3E-06 48.0 7.0 41 141-181 153-194 (476)
275 KOG3115 Methyltransferase-like 94.3 0.048 1E-06 46.8 3.6 58 142-199 61-129 (249)
276 PF03686 UPF0146: Uncharacteri 94.2 0.21 4.5E-06 39.7 6.8 75 141-235 13-89 (127)
277 KOG2198 tRNA cytosine-5-methyl 94.2 0.15 3.3E-06 47.5 6.9 89 135-226 149-245 (375)
278 KOG1201 Hydroxysteroid 17-beta 94.2 0.51 1.1E-05 42.9 10.1 94 141-236 37-140 (300)
279 COG1867 TRM1 N2,N2-dimethylgua 94.2 0.2 4.4E-06 46.7 7.7 82 142-235 53-138 (380)
280 PF04672 Methyltransf_19: S-ad 93.9 0.23 4.9E-06 44.6 7.1 74 127-200 53-134 (267)
281 KOG2352 Predicted spermine/spe 93.8 0.18 3.9E-06 48.6 6.7 79 144-225 51-131 (482)
282 KOG1709 Guanidinoacetate methy 93.7 0.49 1.1E-05 41.2 8.5 96 140-245 100-203 (271)
283 KOG2360 Proliferation-associat 92.9 0.2 4.3E-06 47.0 5.4 96 123-228 195-295 (413)
284 KOG3178 Hydroxyindole-O-methyl 92.9 0.35 7.6E-06 44.8 7.0 55 143-199 179-233 (342)
285 COG1565 Uncharacterized conser 92.8 0.64 1.4E-05 43.4 8.6 44 142-185 78-131 (370)
286 COG0863 DNA modification methy 92.7 0.69 1.5E-05 41.6 8.7 62 124-186 206-267 (302)
287 PF02636 Methyltransf_28: Puta 92.7 0.53 1.1E-05 41.8 7.7 44 142-185 19-72 (252)
288 COG1568 Predicted methyltransf 92.5 0.27 5.9E-06 44.2 5.4 106 114-230 123-234 (354)
289 PF02005 TRM: N2,N2-dimethylgu 92.2 0.49 1.1E-05 44.7 7.2 83 142-236 50-139 (377)
290 COG2961 ComJ Protein involved 92.2 0.65 1.4E-05 41.1 7.3 78 146-231 93-170 (279)
291 PF07757 AdoMet_MTase: Predict 92.0 0.14 3E-06 39.5 2.7 32 141-172 58-89 (112)
292 PRK05867 short chain dehydroge 91.8 1.5 3.2E-05 38.2 9.5 84 141-226 8-95 (253)
293 PRK08339 short chain dehydroge 91.7 1.5 3.3E-05 38.7 9.6 82 141-225 7-93 (263)
294 PRK06172 short chain dehydroge 91.5 1.6 3.4E-05 38.0 9.3 83 141-226 6-93 (253)
295 PF02254 TrkA_N: TrkA-N domain 91.5 0.73 1.6E-05 35.2 6.4 64 150-226 4-71 (116)
296 COG1352 CheR Methylase of chem 91.5 0.57 1.2E-05 42.2 6.5 40 142-181 97-147 (268)
297 PRK08340 glucose-1-dehydrogena 91.5 1.6 3.5E-05 38.2 9.4 80 144-225 2-84 (259)
298 PRK12829 short chain dehydroge 91.4 2 4.3E-05 37.4 10.0 82 141-226 10-95 (264)
299 PRK07063 short chain dehydroge 91.3 1.8 4E-05 37.8 9.6 83 141-225 6-94 (260)
300 KOG1331 Predicted methyltransf 91.3 0.17 3.7E-06 45.6 2.8 56 141-202 45-100 (293)
301 PRK09072 short chain dehydroge 91.2 1.9 4.1E-05 37.8 9.6 83 141-226 4-89 (263)
302 PRK07326 short chain dehydroge 91.1 1.9 4E-05 37.0 9.3 82 141-225 5-90 (237)
303 cd08283 FDH_like_1 Glutathione 91.1 1.8 4E-05 40.6 9.9 48 135-182 178-228 (386)
304 PRK06949 short chain dehydroge 90.9 2.1 4.6E-05 37.2 9.6 83 141-226 8-95 (258)
305 KOG0024 Sorbitol dehydrogenase 90.9 2.3 5E-05 39.3 9.7 51 131-181 159-212 (354)
306 KOG3924 Putative protein methy 90.9 0.34 7.3E-06 45.6 4.5 112 125-245 176-306 (419)
307 PRK07523 gluconate 5-dehydroge 90.8 2.3 5E-05 37.1 9.6 83 141-226 9-96 (255)
308 PLN02253 xanthoxin dehydrogena 90.5 2.3 4.9E-05 37.7 9.5 82 141-225 17-102 (280)
309 PRK06139 short chain dehydroge 90.5 2.2 4.7E-05 39.4 9.6 84 141-226 6-93 (330)
310 PRK06124 gluconate 5-dehydroge 90.4 2.7 5.8E-05 36.6 9.8 83 141-226 10-97 (256)
311 PRK07677 short chain dehydroge 90.3 2.4 5.1E-05 36.9 9.3 81 143-225 2-86 (252)
312 PRK07454 short chain dehydroge 90.3 3.4 7.4E-05 35.6 10.2 83 141-226 5-92 (241)
313 PRK08267 short chain dehydroge 90.2 2.6 5.5E-05 36.9 9.5 81 143-226 2-86 (260)
314 PRK07890 short chain dehydroge 90.2 2.6 5.5E-05 36.7 9.4 82 141-225 4-90 (258)
315 PRK07024 short chain dehydroge 90.2 2.4 5.3E-05 37.0 9.3 80 143-225 3-86 (257)
316 PRK06194 hypothetical protein; 90.0 2.7 5.9E-05 37.3 9.6 83 141-226 5-92 (287)
317 PRK07478 short chain dehydroge 89.9 3.1 6.7E-05 36.2 9.8 84 141-226 5-92 (254)
318 PF04378 RsmJ: Ribosomal RNA s 89.9 0.77 1.7E-05 40.8 5.7 79 146-232 62-140 (245)
319 PRK07231 fabG 3-ketoacyl-(acyl 89.8 2.9 6.3E-05 36.0 9.4 83 141-226 4-90 (251)
320 PRK05876 short chain dehydroge 89.7 3 6.4E-05 37.2 9.6 84 141-226 5-92 (275)
321 KOG2793 Putative N2,N2-dimethy 89.5 1.3 2.9E-05 39.3 6.9 32 141-172 86-118 (248)
322 PF10237 N6-adenineMlase: Prob 89.5 3 6.5E-05 34.7 8.7 94 123-233 5-101 (162)
323 PRK05854 short chain dehydroge 89.5 3.4 7.3E-05 37.6 10.0 83 141-225 13-101 (313)
324 PRK05866 short chain dehydroge 89.5 3.2 7E-05 37.4 9.8 82 141-225 39-125 (293)
325 COG1748 LYS9 Saccharopine dehy 89.4 2 4.4E-05 40.7 8.5 95 143-248 2-99 (389)
326 COG1255 Uncharacterized protei 89.4 1.9 4.1E-05 33.7 6.8 74 142-235 14-89 (129)
327 PRK07109 short chain dehydroge 89.4 3.2 6.9E-05 38.3 9.8 84 141-226 7-94 (334)
328 PRK08862 short chain dehydroge 89.4 3.3 7.2E-05 35.8 9.4 83 141-225 4-91 (227)
329 PRK07904 short chain dehydroge 89.3 2.9 6.2E-05 36.7 9.1 82 141-226 7-96 (253)
330 PRK07533 enoyl-(acyl carrier p 89.3 2.7 5.7E-05 37.0 8.9 83 141-225 9-96 (258)
331 PRK08213 gluconate 5-dehydroge 89.3 3.5 7.6E-05 36.0 9.6 83 141-226 11-98 (259)
332 PRK06200 2,3-dihydroxy-2,3-dih 89.2 3.3 7.2E-05 36.3 9.5 82 141-226 5-89 (263)
333 PRK08217 fabG 3-ketoacyl-(acyl 89.2 3.7 8E-05 35.4 9.7 83 141-226 4-91 (253)
334 PRK07097 gluconate 5-dehydroge 89.2 3.4 7.3E-05 36.3 9.5 84 141-226 9-96 (265)
335 PRK06138 short chain dehydroge 89.2 3.7 8E-05 35.4 9.6 83 141-226 4-90 (252)
336 PRK05872 short chain dehydroge 89.1 3.3 7.2E-05 37.2 9.6 84 141-226 8-94 (296)
337 PRK08226 short chain dehydroge 89.1 3.7 7.9E-05 35.9 9.6 83 141-226 5-91 (263)
338 PRK07035 short chain dehydroge 88.9 3.7 7.9E-05 35.6 9.4 84 141-226 7-94 (252)
339 PRK08643 acetoin reductase; Va 88.9 3.7 8.1E-05 35.7 9.5 81 142-225 2-87 (256)
340 PRK05786 fabG 3-ketoacyl-(acyl 88.8 3.9 8.5E-05 35.0 9.5 83 141-226 4-90 (238)
341 PRK08589 short chain dehydroge 88.7 4.2 9E-05 36.0 9.8 83 141-226 5-91 (272)
342 PRK06505 enoyl-(acyl carrier p 88.7 3.2 6.9E-05 36.9 9.0 83 141-225 6-93 (271)
343 PRK08277 D-mannonate oxidoredu 88.7 4 8.7E-05 36.1 9.7 84 141-226 9-96 (278)
344 KOG1269 SAM-dependent methyltr 88.7 0.34 7.3E-06 45.6 2.7 68 140-207 109-180 (364)
345 PRK07666 fabG 3-ketoacyl-(acyl 88.6 3.9 8.5E-05 35.1 9.3 82 142-226 7-93 (239)
346 PF06962 rRNA_methylase: Putat 88.5 1.3 2.9E-05 35.8 5.7 53 165-227 1-56 (140)
347 PRK07774 short chain dehydroge 88.5 3.9 8.6E-05 35.3 9.3 83 141-226 5-92 (250)
348 PRK08303 short chain dehydroge 88.4 3.4 7.3E-05 37.6 9.2 83 141-225 7-103 (305)
349 PRK09242 tropinone reductase; 88.4 3.9 8.4E-05 35.6 9.3 85 141-227 8-98 (257)
350 PF07279 DUF1442: Protein of u 88.3 5.8 0.00013 34.5 9.8 72 126-197 26-106 (218)
351 PRK07062 short chain dehydroge 88.3 4 8.6E-05 35.7 9.3 84 141-226 7-96 (265)
352 PRK12429 3-hydroxybutyrate deh 88.3 4.2 9.1E-05 35.2 9.4 81 142-225 4-89 (258)
353 PRK12823 benD 1,6-dihydroxycyc 88.2 4.8 0.0001 35.0 9.8 82 141-225 7-92 (260)
354 PRK12826 3-ketoacyl-(acyl-carr 88.2 4.6 9.9E-05 34.7 9.5 83 141-226 5-92 (251)
355 TIGR03206 benzo_BadH 2-hydroxy 88.0 5.6 0.00012 34.2 10.0 82 142-226 3-89 (250)
356 PRK07814 short chain dehydroge 87.8 4.7 0.0001 35.4 9.5 82 141-225 9-95 (263)
357 PRK13394 3-hydroxybutyrate deh 87.7 4.9 0.00011 34.9 9.5 82 141-225 6-92 (262)
358 PRK03659 glutathione-regulated 87.7 2.6 5.5E-05 42.4 8.5 69 144-227 402-474 (601)
359 TIGR01963 PHB_DH 3-hydroxybuty 87.6 4.4 9.6E-05 34.9 9.1 80 143-225 2-86 (255)
360 PRK07791 short chain dehydroge 87.5 5.1 0.00011 35.9 9.6 84 141-226 5-101 (286)
361 PRK05650 short chain dehydroge 87.4 4.8 0.0001 35.4 9.3 80 144-226 2-86 (270)
362 PRK12481 2-deoxy-D-gluconate 3 87.2 4.3 9.4E-05 35.4 8.9 82 141-226 7-92 (251)
363 PRK07453 protochlorophyllide o 87.2 5.9 0.00013 36.0 10.0 82 141-225 5-91 (322)
364 PRK08265 short chain dehydroge 87.1 5.3 0.00011 35.1 9.4 82 141-226 5-89 (261)
365 cd05188 MDR Medium chain reduc 87.1 6.1 0.00013 34.1 9.7 94 140-244 133-229 (271)
366 PRK06935 2-deoxy-D-gluconate 3 86.9 6.4 0.00014 34.3 9.8 83 141-226 14-100 (258)
367 PLN02780 ketoreductase/ oxidor 86.9 5.4 0.00012 36.6 9.6 83 141-225 52-140 (320)
368 PRK07984 enoyl-(acyl carrier p 86.9 5.2 0.00011 35.4 9.2 84 141-226 5-93 (262)
369 PRK08085 gluconate 5-dehydroge 86.8 5.9 0.00013 34.4 9.5 83 141-226 8-95 (254)
370 PRK08415 enoyl-(acyl carrier p 86.8 5.4 0.00012 35.6 9.3 84 141-226 4-92 (274)
371 KOG2920 Predicted methyltransf 86.6 0.52 1.1E-05 42.5 2.6 51 127-177 99-153 (282)
372 PRK06113 7-alpha-hydroxysteroi 86.5 7.6 0.00017 33.8 10.0 84 141-226 10-97 (255)
373 PRK06196 oxidoreductase; Provi 86.4 5.7 0.00012 36.0 9.5 80 141-226 25-108 (315)
374 PRK05993 short chain dehydroge 86.4 5.1 0.00011 35.5 9.0 77 142-225 4-84 (277)
375 PRK07576 short chain dehydroge 86.4 6.9 0.00015 34.4 9.7 82 141-225 8-94 (264)
376 PRK06079 enoyl-(acyl carrier p 86.4 4.9 0.00011 35.1 8.8 82 141-226 6-92 (252)
377 PF11899 DUF3419: Protein of u 86.3 2.2 4.7E-05 40.5 6.6 52 133-184 27-78 (380)
378 PRK12939 short chain dehydroge 86.2 7.1 0.00015 33.5 9.6 82 141-225 6-92 (250)
379 PRK08690 enoyl-(acyl carrier p 86.2 5.5 0.00012 35.0 9.0 83 141-225 5-92 (261)
380 PLN03209 translocon at the inn 86.2 4 8.6E-05 40.8 8.7 80 137-226 75-168 (576)
381 PRK06720 hypothetical protein; 86.2 9.2 0.0002 31.7 9.8 84 141-226 15-102 (169)
382 COG0300 DltE Short-chain dehyd 86.1 8.8 0.00019 34.5 10.1 86 141-228 5-95 (265)
383 PRK08945 putative oxoacyl-(acy 86.0 7.1 0.00015 33.7 9.5 83 141-225 11-100 (247)
384 PRK06182 short chain dehydroge 85.8 6.4 0.00014 34.7 9.3 78 142-227 3-84 (273)
385 PRK06181 short chain dehydroge 85.8 7.2 0.00016 34.0 9.5 80 143-225 2-86 (263)
386 cd08254 hydroxyacyl_CoA_DH 6-h 85.8 12 0.00026 33.6 11.3 44 138-181 162-207 (338)
387 PRK08159 enoyl-(acyl carrier p 85.5 6.5 0.00014 34.9 9.2 83 141-225 9-96 (272)
388 PRK06125 short chain dehydroge 85.5 8.2 0.00018 33.7 9.7 78 141-225 6-89 (259)
389 PF11968 DUF3321: Putative met 85.3 1.4 2.9E-05 38.4 4.4 61 143-226 53-113 (219)
390 PRK06197 short chain dehydroge 85.3 7.4 0.00016 35.0 9.6 82 141-225 15-103 (306)
391 PTZ00357 methyltransferase; Pr 85.3 2.7 5.8E-05 42.7 6.9 82 144-226 703-801 (1072)
392 PRK06603 enoyl-(acyl carrier p 85.2 7.5 0.00016 34.2 9.4 84 141-226 7-95 (260)
393 PF05206 TRM13: Methyltransfer 85.2 3.3 7.1E-05 37.1 6.9 64 138-202 15-88 (259)
394 PRK06500 short chain dehydroge 85.1 8.6 0.00019 33.0 9.6 81 141-226 5-89 (249)
395 PF00106 adh_short: short chai 85.0 4.5 9.7E-05 32.5 7.3 82 144-227 2-90 (167)
396 PRK07831 short chain dehydroge 85.0 8.3 0.00018 33.7 9.5 84 141-226 16-106 (262)
397 KOG2782 Putative SAM dependent 85.0 0.56 1.2E-05 40.9 1.9 73 127-199 29-105 (303)
398 PRK09880 L-idonate 5-dehydroge 84.8 8 0.00017 35.5 9.7 48 135-182 163-213 (343)
399 PRK07889 enoyl-(acyl carrier p 84.7 5.4 0.00012 35.0 8.2 81 141-225 6-93 (256)
400 PRK10669 putative cation:proto 84.6 2.4 5.2E-05 42.1 6.5 65 150-227 423-491 (558)
401 KOG0822 Protein kinase inhibit 84.6 1.9 4.1E-05 42.3 5.4 59 143-201 369-435 (649)
402 COG0569 TrkA K+ transport syst 84.6 6.3 0.00014 34.4 8.4 72 144-227 2-76 (225)
403 PF02086 MethyltransfD12: D12 84.5 1.8 3.8E-05 38.1 5.0 54 128-181 7-60 (260)
404 PRK09496 trkA potassium transp 84.3 3.4 7.4E-05 39.5 7.3 88 127-227 214-307 (453)
405 COG2933 Predicted SAM-dependen 84.3 2.5 5.4E-05 38.0 5.6 84 140-240 210-296 (358)
406 PRK08251 short chain dehydroge 84.1 9.5 0.00021 32.8 9.4 81 142-225 2-89 (248)
407 PRK07792 fabG 3-ketoacyl-(acyl 83.8 8.3 0.00018 34.9 9.2 82 141-225 11-97 (306)
408 PRK07067 sorbitol dehydrogenas 83.7 10 0.00022 33.0 9.5 80 141-225 5-88 (257)
409 TIGR03325 BphB_TodD cis-2,3-di 83.7 8.4 0.00018 33.7 9.0 81 141-225 4-87 (262)
410 PF13561 adh_short_C2: Enoyl-( 83.7 4.1 8.8E-05 35.3 6.9 73 151-225 7-81 (241)
411 PRK05717 oxidoreductase; Valid 83.3 9.6 0.00021 33.1 9.2 82 141-227 9-94 (255)
412 PF05050 Methyltransf_21: Meth 83.0 2.6 5.6E-05 33.9 5.0 50 147-196 1-61 (167)
413 PRK06057 short chain dehydroge 83.0 11 0.00023 32.8 9.3 79 141-226 6-88 (255)
414 PRK06914 short chain dehydroge 82.9 12 0.00026 33.0 9.7 81 142-226 3-90 (280)
415 PRK08628 short chain dehydroge 82.8 11 0.00024 32.7 9.4 83 141-226 6-92 (258)
416 PRK06940 short chain dehydroge 82.7 11 0.00023 33.5 9.3 79 144-227 4-86 (275)
417 PRK05855 short chain dehydroge 82.7 9.3 0.0002 37.3 9.7 81 142-225 315-400 (582)
418 PRK09186 flagellin modificatio 82.7 11 0.00024 32.5 9.3 82 141-225 3-91 (256)
419 PF07669 Eco57I: Eco57I restri 82.6 0.71 1.5E-05 35.3 1.4 15 217-231 2-16 (106)
420 PRK07825 short chain dehydroge 82.5 11 0.00024 33.1 9.3 78 142-225 5-86 (273)
421 PRK06701 short chain dehydroge 82.5 10 0.00023 34.0 9.3 83 141-225 45-132 (290)
422 PRK07074 short chain dehydroge 82.4 13 0.00028 32.3 9.6 79 143-225 3-85 (257)
423 PRK08416 7-alpha-hydroxysteroi 82.3 13 0.00028 32.5 9.6 83 141-225 7-95 (260)
424 TIGR01832 kduD 2-deoxy-D-gluco 82.3 12 0.00026 32.2 9.3 82 141-226 4-89 (248)
425 PRK08594 enoyl-(acyl carrier p 82.3 11 0.00023 33.2 9.1 82 141-225 6-95 (257)
426 PRK12384 sorbitol-6-phosphate 82.2 11 0.00024 32.6 9.2 81 142-225 2-89 (259)
427 PF00107 ADH_zinc_N: Zinc-bind 82.2 7.2 0.00016 30.0 7.1 67 151-227 1-68 (130)
428 PRK07102 short chain dehydroge 82.1 10 0.00023 32.6 8.8 77 143-225 2-84 (243)
429 PRK03562 glutathione-regulated 82.1 3.1 6.7E-05 42.0 6.1 68 143-225 401-472 (621)
430 PRK05599 hypothetical protein; 82.0 12 0.00026 32.5 9.3 80 144-226 2-86 (246)
431 PRK06180 short chain dehydroge 81.9 11 0.00024 33.3 9.1 81 142-226 4-87 (277)
432 COG4221 Short-chain alcohol de 81.8 13 0.00029 32.9 9.2 81 141-225 5-89 (246)
433 KOG3201 Uncharacterized conser 81.8 0.76 1.6E-05 38.3 1.3 59 127-185 15-76 (201)
434 TIGR02415 23BDH acetoin reduct 81.6 15 0.00033 31.6 9.7 80 144-226 2-86 (254)
435 PRK05875 short chain dehydroge 81.6 13 0.00029 32.6 9.5 81 141-225 6-94 (276)
436 TIGR01289 LPOR light-dependent 81.6 14 0.0003 33.6 9.8 82 142-225 3-89 (314)
437 PRK08703 short chain dehydroge 81.1 15 0.00032 31.5 9.4 83 141-225 5-95 (239)
438 PRK08993 2-deoxy-D-gluconate 3 80.9 12 0.00026 32.6 8.8 81 141-226 9-94 (253)
439 PRK08324 short chain dehydroge 80.8 11 0.00024 38.5 9.6 83 141-226 421-507 (681)
440 COG5379 BtaA S-adenosylmethion 80.8 4.8 0.0001 36.7 6.2 49 137-185 59-107 (414)
441 PRK09291 short chain dehydroge 80.7 12 0.00025 32.4 8.7 74 143-225 3-81 (257)
442 COG4798 Predicted methyltransf 80.7 2.7 5.9E-05 36.1 4.3 37 136-172 43-82 (238)
443 PRK06198 short chain dehydroge 80.4 12 0.00027 32.4 8.8 82 141-225 5-92 (260)
444 PRK07806 short chain dehydroge 80.4 16 0.00035 31.3 9.5 83 141-226 5-93 (248)
445 PRK08278 short chain dehydroge 80.4 12 0.00026 33.1 8.8 84 141-226 5-99 (273)
446 PRK12748 3-ketoacyl-(acyl-carr 80.2 15 0.00032 31.9 9.2 82 141-225 4-103 (256)
447 KOG1208 Dehydrogenases with di 80.1 9.5 0.00021 35.1 8.2 87 142-230 35-132 (314)
448 KOG1253 tRNA methyltransferase 79.9 1.7 3.6E-05 42.2 3.1 86 141-235 109-200 (525)
449 PRK05565 fabG 3-ketoacyl-(acyl 79.7 17 0.00038 30.9 9.4 83 142-227 5-93 (247)
450 PRK06841 short chain dehydroge 79.4 16 0.00035 31.5 9.2 82 141-226 14-98 (255)
451 PRK06114 short chain dehydroge 79.4 17 0.00037 31.5 9.4 83 141-226 7-95 (254)
452 PRK05653 fabG 3-ketoacyl-(acyl 79.2 17 0.00037 30.9 9.2 81 142-225 5-90 (246)
453 cd00401 AdoHcyase S-adenosyl-L 79.1 9 0.0002 36.7 7.9 65 117-181 176-243 (413)
454 PRK07201 short chain dehydroge 79.1 14 0.0003 37.1 9.7 82 142-226 371-457 (657)
455 PLN02896 cinnamyl-alcohol dehy 79.0 11 0.00023 34.8 8.2 58 141-199 9-70 (353)
456 PRK12743 oxidoreductase; Provi 78.8 19 0.00041 31.3 9.5 82 142-226 2-89 (256)
457 KOG1371 UDP-glucose 4-epimeras 78.7 11 0.00023 35.0 7.8 74 142-223 2-83 (343)
458 TIGR02622 CDP_4_6_dhtase CDP-g 78.6 9.8 0.00021 35.0 7.9 77 141-225 3-83 (349)
459 PRK06179 short chain dehydroge 78.6 11 0.00024 33.0 7.9 76 142-227 4-83 (270)
460 PRK06997 enoyl-(acyl carrier p 78.4 14 0.0003 32.5 8.5 83 141-225 5-92 (260)
461 PRK13656 trans-2-enoyl-CoA red 78.1 27 0.00059 33.2 10.6 85 141-228 40-142 (398)
462 PRK06484 short chain dehydroge 77.9 16 0.00035 35.5 9.5 81 141-225 268-351 (520)
463 COG4889 Predicted helicase [Ge 77.7 2.9 6.3E-05 43.6 4.2 42 119-161 813-865 (1518)
464 PRK06483 dihydromonapterin red 77.7 17 0.00037 31.1 8.7 77 143-225 3-82 (236)
465 PF12242 Eno-Rase_NADH_b: NAD( 77.3 9.5 0.00021 27.6 5.6 33 141-173 38-74 (78)
466 PLN03154 putative allyl alcoho 77.2 13 0.00028 34.4 8.2 48 136-183 153-203 (348)
467 PRK09424 pntA NAD(P) transhydr 76.6 7 0.00015 38.5 6.5 43 140-182 163-207 (509)
468 PRK07041 short chain dehydroge 76.3 14 0.00031 31.3 7.8 70 151-226 5-78 (230)
469 PRK09135 pteridine reductase; 76.3 27 0.00058 29.8 9.6 83 141-226 5-94 (249)
470 PRK10538 malonic semialdehyde 76.3 24 0.00052 30.5 9.3 77 144-225 2-82 (248)
471 PRK14106 murD UDP-N-acetylmura 76.3 19 0.00041 34.4 9.4 83 141-238 4-89 (450)
472 PRK12859 3-ketoacyl-(acyl-carr 76.2 26 0.00056 30.5 9.6 84 141-226 5-105 (256)
473 TIGR03201 dearomat_had 6-hydro 76.2 11 0.00024 34.6 7.5 46 136-181 161-208 (349)
474 PF03721 UDPG_MGDP_dh_N: UDP-g 76.1 2.7 5.8E-05 35.6 3.0 30 151-180 7-40 (185)
475 COG1063 Tdh Threonine dehydrog 75.9 9.7 0.00021 35.4 7.1 44 140-183 167-213 (350)
476 KOG1209 1-Acyl dihydroxyaceton 75.7 16 0.00034 32.1 7.6 79 141-224 6-88 (289)
477 PRK09496 trkA potassium transp 75.6 9.3 0.0002 36.5 7.0 69 144-226 2-74 (453)
478 PRK05693 short chain dehydroge 75.5 20 0.00043 31.5 8.7 75 144-226 3-81 (274)
479 PRK06484 short chain dehydroge 75.3 18 0.0004 35.1 9.1 82 141-226 4-88 (520)
480 KOG1205 Predicted dehydrogenas 74.9 19 0.00041 32.7 8.3 84 141-226 11-100 (282)
481 PRK07417 arogenate dehydrogena 74.8 8.5 0.00018 34.5 6.2 39 144-182 2-42 (279)
482 PRK07832 short chain dehydroge 74.8 24 0.00051 31.0 9.0 80 144-226 2-87 (272)
483 PRK12745 3-ketoacyl-(acyl-carr 74.7 29 0.00062 29.9 9.4 80 143-225 3-88 (256)
484 TIGR02632 RhaD_aldol-ADH rhamn 74.5 24 0.00052 36.0 10.0 82 142-226 414-502 (676)
485 TIGR01500 sepiapter_red sepiap 74.2 29 0.00063 30.1 9.4 57 144-200 2-68 (256)
486 PRK12828 short chain dehydroge 74.2 30 0.00064 29.2 9.3 82 141-226 6-91 (239)
487 PRK07775 short chain dehydroge 74.2 33 0.00071 30.2 9.8 81 142-225 10-95 (274)
488 PRK08063 enoyl-(acyl carrier p 74.1 28 0.00062 29.8 9.2 81 142-225 4-90 (250)
489 TIGR00518 alaDH alanine dehydr 74.0 15 0.00033 34.6 7.8 43 141-183 166-210 (370)
490 PRK12827 short chain dehydroge 74.0 32 0.00068 29.3 9.5 82 142-226 6-96 (249)
491 PRK08177 short chain dehydroge 74.0 15 0.00033 31.2 7.4 73 144-225 3-79 (225)
492 TIGR02822 adh_fam_2 zinc-bindi 74.0 15 0.00032 33.7 7.7 48 135-182 159-208 (329)
493 PRK08263 short chain dehydroge 73.9 30 0.00064 30.4 9.4 79 142-225 3-85 (275)
494 PRK08309 short chain dehydroge 73.9 46 0.001 27.8 10.0 89 144-235 2-93 (177)
495 KOG0725 Reductases with broad 73.7 34 0.00075 30.6 9.8 83 141-225 7-97 (270)
496 PLN02657 3,8-divinyl protochlo 73.5 19 0.00041 34.0 8.4 78 141-224 59-143 (390)
497 PLN02662 cinnamyl-alcohol dehy 72.8 16 0.00034 32.9 7.5 59 141-200 3-68 (322)
498 cd08295 double_bond_reductase_ 72.8 23 0.0005 32.2 8.7 48 136-183 146-196 (338)
499 PRK09134 short chain dehydroge 72.6 34 0.00073 29.7 9.4 82 141-225 8-95 (258)
500 PRK12744 short chain dehydroge 72.6 28 0.0006 30.2 8.8 82 141-225 7-97 (257)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.4e-27 Score=207.35 Aligned_cols=159 Identities=38% Similarity=0.618 Sum_probs=147.8
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~ 193 (285)
.+.+.+||||+.++.+++.+++...+.+++.|||||+|.|.+|..|++.+.+|++||+|+.+++.+++.+...+|+++++
T Consensus 3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 45688999999999999999999999999999999999999999999999999999999999999999987667999999
Q ss_pred cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (285)
Q Consensus 194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~ 273 (285)
+|+++.++.. ...++.||+|+||+++++++.+|+.....+..+++|+|+++++|++ +.|+++.|++|+
T Consensus 83 ~DaLk~d~~~-----------l~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls 150 (259)
T COG0030 83 GDALKFDFPS-----------LAQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS 150 (259)
T ss_pred CchhcCcchh-----------hcCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence 9999987632 1167999999999999999999999988888999999999999999 999999999999
Q ss_pred HHHHHhhcccc
Q 023240 274 IFVNFYSGQFC 284 (285)
Q Consensus 274 ~~~~~f~~~~~ 284 (285)
+++|+||++.+
T Consensus 151 V~~q~~~~v~~ 161 (259)
T COG0030 151 VLVQYYADVEI 161 (259)
T ss_pred hhhhheEEEEE
Confidence 99999999754
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.94 E-value=1.9e-26 Score=209.11 Aligned_cols=159 Identities=35% Similarity=0.529 Sum_probs=146.5
Q ss_pred CCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc---CC
Q 023240 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---ID 187 (285)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~---~~ 187 (285)
+++.+++.+||||+.++.++..+++.+.+.++.+|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++.. .+
T Consensus 6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~ 85 (294)
T PTZ00338 6 SGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLAS 85 (294)
T ss_pred CCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999998899999999999999999999888999999999999999998864 35
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCC
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~ 267 (285)
+++++++|+.+.++ ..+|+||+|+||++.++++.+++.....+..+++++|+++++|++ +.|+++
T Consensus 86 ~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~k 150 (294)
T PTZ00338 86 KLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGDE 150 (294)
T ss_pred cEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCCc
Confidence 89999999988643 357999999999999999999998777888999999999999999 999999
Q ss_pred CchhHHHHHHHhhcccc
Q 023240 268 EYRPINIFVNFYSGQFC 284 (285)
Q Consensus 268 ~y~~l~~~~~~f~~~~~ 284 (285)
.|++|++++|+||++.+
T Consensus 151 ~y~~LSv~~q~~~~~~~ 167 (294)
T PTZ00338 151 LYCRLSVNTQLLCRVTH 167 (294)
T ss_pred ccCHHHHHHHHHhceEE
Confidence 99999999999999754
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.94 E-value=9.8e-26 Score=202.91 Aligned_cols=168 Identities=36% Similarity=0.568 Sum_probs=150.5
Q ss_pred HHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 103 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~ 182 (285)
.+.+.+..++..+++.+||+|.+++.+++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++
T Consensus 4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET 83 (272)
T ss_pred hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence 34556777788999999999999999999999999988899999999999999999999888999999999999999988
Q ss_pred hhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCC
Q 023240 183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP 262 (285)
Q Consensus 183 ~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~ 262 (285)
+.. ++++++++|+.++++.+ -.++.||+||||+..++++.+++.....+..+++++|+++++|++ +
T Consensus 84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a 149 (272)
T PRK00274 84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A 149 (272)
T ss_pred hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence 754 68999999999986421 115899999999999999999997666678899999999999999 9
Q ss_pred CCCCCCchhHHHHHHHhhcccc
Q 023240 263 SLRTSEYRPINIFVNFYSGQFC 284 (285)
Q Consensus 263 ~~~~~~y~~l~~~~~~f~~~~~ 284 (285)
.|+.+.|+++|+++|+||++.+
T Consensus 150 ~pg~~~y~~lSv~~~~~~~~~~ 171 (272)
T PRK00274 150 KPGSKAYGRLSVLVQYYCDVEK 171 (272)
T ss_pred CCCCccccHHHHHHHHHcceEE
Confidence 9999999999999999999754
No 4
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=188.30 Aligned_cols=154 Identities=33% Similarity=0.564 Sum_probs=138.9
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~ 193 (285)
.+++.+||||+.++.+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...+++++++
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 57789999999999999999999998889999999999999999999998899999999999999999886556899999
Q ss_pred cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (285)
Q Consensus 194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~ 273 (285)
+|+.++++ ..+|.|++|+||+..++++.+++. ..+..+.++++++.+.|++ +.+|++.|++++
T Consensus 82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls 144 (258)
T PRK14896 82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMV-AKPGTKEYGRLS 144 (258)
T ss_pred eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence 99998753 236999999999999999888875 3345678999999999999 999999999999
Q ss_pred HHHHHhhcccc
Q 023240 274 IFVNFYSGQFC 284 (285)
Q Consensus 274 ~~~~~f~~~~~ 284 (285)
+..+++|++.+
T Consensus 145 v~~~~~~~~~~ 155 (258)
T PRK14896 145 VMVQYYADVEI 155 (258)
T ss_pred HHHHHHeeeEE
Confidence 99999998743
No 5
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.91 E-value=1.5e-23 Score=186.78 Aligned_cols=158 Identities=35% Similarity=0.590 Sum_probs=140.2
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEE
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~ 193 (285)
.+++.+||||+.++.+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+|+.+++.++.++...+++++++
T Consensus 2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~ 81 (253)
T TIGR00755 2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE 81 (253)
T ss_pred CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence 57889999999999999999999998889999999999999999999998889999999999999998876556899999
Q ss_pred cccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHH
Q 023240 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (285)
Q Consensus 194 gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~ 273 (285)
+|+.+.++.. . +..+.|++|+||++.++++.+++. ...+..+.+++|+++++||+ +.|+++.|+.++
T Consensus 82 ~D~~~~~~~~---------~--d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~ls 148 (253)
T TIGR00755 82 GDALKVDLPD---------F--PKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRLS 148 (253)
T ss_pred CchhcCChhH---------c--CCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHHH
Confidence 9999987521 0 011599999999999999999985 34556789999999999999 999999999999
Q ss_pred HHHHHhhcccc
Q 023240 274 IFVNFYSGQFC 284 (285)
Q Consensus 274 ~~~~~f~~~~~ 284 (285)
++.++||++.+
T Consensus 149 v~~~~~~~~~~ 159 (253)
T TIGR00755 149 VLVQYFANVEI 159 (253)
T ss_pred HHHHHHcceEE
Confidence 99999998754
No 6
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.90 E-value=5.5e-23 Score=172.35 Aligned_cols=142 Identities=37% Similarity=0.559 Sum_probs=128.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~ 209 (285)
++.+++.+.+.++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...++++++++|+.++++
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~-------- 73 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL-------- 73 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc--------
Confidence 456778888888889999999999999999998889999999999999999998766689999999999864
Q ss_pred hhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCCCchhHHHHHHHhhcccc
Q 023240 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSGQFC 284 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~~y~~l~~~~~~f~~~~~ 284 (285)
....+|.|++||||+..++++.+++........+.+++|++.++|++ +.|+++.|+.++++.++||++.+
T Consensus 74 ----~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~ 143 (169)
T smart00650 74 ----PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKI 143 (169)
T ss_pred ----cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEE
Confidence 22468999999999999999999998777778999999999999999 99999999999999999998754
No 7
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=180.04 Aligned_cols=160 Identities=38% Similarity=0.547 Sum_probs=149.6
Q ss_pred CCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---
Q 023240 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--- 187 (285)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--- 187 (285)
.+..+.+.||||+.-.+.+++.|++...+++++.|||+|.|||.+|..|.+.|++|+|+|+|+.|++...+++...+
T Consensus 28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~ 107 (315)
T KOG0820|consen 28 GGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSG 107 (315)
T ss_pred cCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCceeeeEeeehHhHHHHhcCCCCCCC
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~~~~~~~~ 267 (285)
.+++++||+...+ .+.||.+|+|.||+++++++..++..+..+..+..++|.+++.|++ +.||++
T Consensus 108 kLqV~~gD~lK~d--------------~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd~ 172 (315)
T KOG0820|consen 108 KLQVLHGDFLKTD--------------LPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGDS 172 (315)
T ss_pred eeeEEecccccCC--------------CcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCCc
Confidence 7999999999864 3679999999999999999999999999999999999999999998 999999
Q ss_pred CchhHHHHHHHhhccccC
Q 023240 268 EYRPINIFVNFYSGQFCI 285 (285)
Q Consensus 268 ~y~~l~~~~~~f~~~~~~ 285 (285)
.|-++++.+|++-++.+|
T Consensus 173 ~Ycrlsin~q~~a~v~~i 190 (315)
T KOG0820|consen 173 LYCRLSINVQLLARVTHI 190 (315)
T ss_pred hhceeehhhHHhhcchhh
Confidence 999999999999887543
No 8
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.87 E-value=1e-21 Score=175.95 Aligned_cols=162 Identities=34% Similarity=0.575 Sum_probs=143.4
Q ss_pred CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Q 023240 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (285)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~ 192 (285)
..+++.+||||+.++.+++.+++.+.+.++..|||||+|.|.+|..|++.+.+|+++|+++.+++.+++.+...++++++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi 81 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVI 81 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceee
Confidence 35778999999999999999999999999999999999999999999999999999999999999999988866799999
Q ss_pred EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhccCCCc-eeeeEeeehHhHHHHhcCCCCCCCCchh
Q 023240 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRP 271 (285)
Q Consensus 193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~-~~~~~~~~~~~~~~rl~~~~~~~~~y~~ 271 (285)
++|+.+++..+. .......||+|+||+..++++.+++..... ...+.++++++.++|++ +.|+.+.|++
T Consensus 82 ~~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~ 151 (262)
T PF00398_consen 82 NGDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSR 151 (262)
T ss_dssp ES-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSH
T ss_pred ecchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccch
Confidence 999999875421 134678999999999999999998874333 57899999999999999 9999999999
Q ss_pred HHHHHHHhhcccc
Q 023240 272 INIFVNFYSGQFC 284 (285)
Q Consensus 272 l~~~~~~f~~~~~ 284 (285)
+++++++||++.+
T Consensus 152 lsv~~q~~~~i~~ 164 (262)
T PF00398_consen 152 LSVLAQAFFDIKL 164 (262)
T ss_dssp HHHHHHHHEEEEE
T ss_pred hhhhhhhhhceeE
Confidence 9999999999854
No 9
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.7e-17 Score=137.32 Aligned_cols=144 Identities=20% Similarity=0.309 Sum_probs=117.8
Q ss_pred HHHHHHhcCCC-chHHHHHHHHhCCC---CC-------------ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 023240 89 ACIVCARSQDD-DYHATIKALNSKGR---FP-------------RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151 (285)
Q Consensus 89 ~mv~~q~~~~~-~~~~~~~~~~~~~~---~~-------------~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG 151 (285)
.|+..+++.++ ...++.+.+...+. -+ ....|+ ++..+.++..|++.+.++++++|||||||
T Consensus 4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG 82 (209)
T COG2518 4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence 67888888888 44777777654321 11 012355 89999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCC
Q 023240 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN 228 (285)
Q Consensus 152 ~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~ 228 (285)
+||.+..||+...+|++||++++..+.|++|++..+ ||.+++||....- ....+||.|+.+ -.-.
T Consensus 83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~------------~~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW------------PEEAPYDRIIVTAAAPE 150 (209)
T ss_pred chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC------------CCCCCcCEEEEeeccCC
Confidence 999999999998899999999999999999998765 8999999998864 355789999876 4446
Q ss_pred CcHHHHHHhccCCCcee
Q 023240 229 ISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 229 ~~~~i~~~l~~~g~~~~ 245 (285)
.+..+++||.++|.++.
T Consensus 151 vP~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 151 VPEALLDQLKPGGRLVI 167 (209)
T ss_pred CCHHHHHhcccCCEEEE
Confidence 67888999999888773
No 10
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.64 E-value=2.9e-15 Score=129.65 Aligned_cols=146 Identities=21% Similarity=0.348 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCC-chHHHHHHHHhCC---CCCcc-------------ccCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023240 87 ASACIVCARSQDD-DYHATIKALNSKG---RFPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (285)
Q Consensus 87 r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~~-------------~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG 149 (285)
++.|++++++... ...++.+.+...+ +-+.. ..+ ..++.|.+...|++.+.++++.+|||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~-~~is~P~~~a~~l~~L~l~pg~~VLeIG 80 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCG-QTISAPSMVARMLEALDLKPGDRVLEIG 80 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETT-EEE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecce-eechHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5789999998885 6777777765532 21211 123 3778899999999999999999999999
Q ss_pred CcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240 150 PGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 150 cG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
||+||.+..++.. + ..|++||+++..++.|+++++..+ |++++++|..... ....+||.|+.+
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~------------~~~apfD~I~v~ 148 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW------------PEEAPFDRIIVT 148 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT------------GGG-SEEEEEES
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc------------ccCCCcCEEEEe
Confidence 9999999999987 3 479999999999999999998654 8999999987653 344679999997
Q ss_pred CCC-CCcHHHHHHhccCCCcee
Q 023240 225 IPF-NISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 225 ~P~-~~~~~i~~~l~~~g~~~~ 245 (285)
... ..+..++++|.++|.++.
T Consensus 149 ~a~~~ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 149 AAVPEIPEALLEQLKPGGRLVA 170 (209)
T ss_dssp SBBSS--HHHHHTEEEEEEEEE
T ss_pred eccchHHHHHHHhcCCCcEEEE
Confidence 543 556778888887777664
No 11
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.63 E-value=1.2e-14 Score=126.44 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHhCCC---CCc-----------ccc-CCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240 84 KGAASACIVCARSQDD-DYHATIKALNSKGR---FPR-----------KSL-GQHYMLNSEINDQLAAAAAVQEGDIVLE 147 (285)
Q Consensus 84 ~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~~---~~~-----------~~~-g~~~~~~~~~~~~l~~~l~~~~~~~VLD 147 (285)
...+..|++++++.+. ....+.+.+...+. -+. ..+ ..+.+..+.....+++.+.+.++.+|||
T Consensus 4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLD 83 (215)
T TIGR00080 4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLE 83 (215)
T ss_pred hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEE
Confidence 3457889999998885 56666666654321 111 011 1235677888999999999999999999
Q ss_pred EcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240 148 IGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (285)
Q Consensus 148 iGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv 222 (285)
||||+|+++..+++.. .+|+++|+++++++.|+++++..+ +++++++|+.+.. .....||+|+
T Consensus 84 iG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~------------~~~~~fD~Ii 151 (215)
T TIGR00080 84 IGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW------------EPLAPYDRIY 151 (215)
T ss_pred ECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC------------cccCCCCEEE
Confidence 9999999999999873 369999999999999999988664 8999999998753 2346799999
Q ss_pred EcCCC-CCcHHHHHHhccCCCce
Q 023240 223 ANIPF-NISTDVIKQLLPMGDIF 244 (285)
Q Consensus 223 ~n~P~-~~~~~i~~~l~~~g~~~ 244 (285)
.+.+. +....+.++|.++|.++
T Consensus 152 ~~~~~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 152 VTAAGPKIPEALIDQLKEGGILV 174 (215)
T ss_pred EcCCcccccHHHHHhcCcCcEEE
Confidence 88654 45555556665555544
No 12
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=1.7e-14 Score=125.37 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCC-chHHHHHHHHhCC---CCCc-------------cccCCcccCCHHHHHHHHHHhcCCCCCEEEEE
Q 023240 86 AASACIVCARSQDD-DYHATIKALNSKG---RFPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (285)
Q Consensus 86 ~r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDi 148 (285)
.++.|+++|++.+. ....+.+.+.... +-+. ...|+ .++.+.+...+++.+.+.++.+||||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI 83 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI 83 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence 34789999999996 6677777665432 1111 12244 67889999999999999999999999
Q ss_pred cCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240 149 GPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (285)
Q Consensus 149 GcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~ 223 (285)
|||+|+++..+++. +++|+++|+++++++.|+++++..+ +++++++|+.+.. .....||+|++
T Consensus 84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~------------~~~~~fD~I~~ 151 (212)
T PRK13942 84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY------------EENAPYDRIYV 151 (212)
T ss_pred CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC------------CcCCCcCEEEE
Confidence 99999999999876 3699999999999999999987653 8999999998754 23467999988
Q ss_pred cCCC-CCcHHHHHHhccCCCce
Q 023240 224 NIPF-NISTDVIKQLLPMGDIF 244 (285)
Q Consensus 224 n~P~-~~~~~i~~~l~~~g~~~ 244 (285)
+-.. .....+.++|.++|.++
T Consensus 152 ~~~~~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 152 TAAGPDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred CCCcccchHHHHHhhCCCcEEE
Confidence 7443 34455666666666544
No 13
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.5e-14 Score=120.93 Aligned_cols=132 Identities=21% Similarity=0.327 Sum_probs=105.6
Q ss_pred CCCccccCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC-C
Q 023240 113 RFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-D 187 (285)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~-~ 187 (285)
.+++.++.| |.++..++..++..... -.+.+|+|+|||||.+++..+..| ..|+|+|+|+++++.+++|.++. +
T Consensus 15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g 93 (198)
T COG2263 15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG 93 (198)
T ss_pred CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCC
Confidence 467778888 99999999888877643 357789999999999999999887 58999999999999999999865 4
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc-----HHHHHHhccCCCceeeeEeeehHhHHHHhc
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLV 260 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-----~~i~~~l~~~g~~~~~~~~~~~~~~~~rl~ 260 (285)
++.++++|+.+.. +.+|.+|+||||... .+++...++.+..+..++..-..++..+..
T Consensus 94 ~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~ 156 (198)
T COG2263 94 DVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFA 156 (198)
T ss_pred ceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHH
Confidence 8999999999875 668899999999654 466666667666666666554445544444
No 14
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=4.4e-14 Score=122.08 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCCC-chHHHHHHHHhCC---CCCc-------------cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023240 87 ASACIVCARSQDD-DYHATIKALNSKG---RFPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (285)
Q Consensus 87 r~~mv~~q~~~~~-~~~~~~~~~~~~~---~~~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG 149 (285)
|..|++++.+.+. ...++.+.+...+ +-+. ...++ .+..+.....+++.+.+.++.+|||+|
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG 80 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG 80 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence 5678888887775 5566666654432 1111 11233 566688889999999988889999999
Q ss_pred CcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240 150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (285)
Q Consensus 150 cG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~ 223 (285)
||+|+.+..+++. +++|+++|+++++++.|++++...+ +++++++|+.+.. ...+.||.|++
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~Ii~ 148 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL------------EKHAPFDAIIV 148 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC------------ccCCCccEEEE
Confidence 9999999998875 3699999999999999999987653 5899999998753 23367999999
Q ss_pred cCCC-CCcHHHHHHhccCCCce
Q 023240 224 NIPF-NISTDVIKQLLPMGDIF 244 (285)
Q Consensus 224 n~P~-~~~~~i~~~l~~~g~~~ 244 (285)
+... +.+..+.++|.++|.++
T Consensus 149 ~~~~~~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 149 TAAASTIPSALVRQLKDGGVLV 170 (205)
T ss_pred ccCcchhhHHHHHhcCcCcEEE
Confidence 8664 44455556666655544
No 15
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.55 E-value=2.3e-13 Score=118.03 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHhCCCC---Ccc----cc--------CCcccCCHHHHHHHHHHhcCCCCCEEEE
Q 023240 84 KGAASACIVCARSQDD-DYHATIKALNSKGRF---PRK----SL--------GQHYMLNSEINDQLAAAAAVQEGDIVLE 147 (285)
Q Consensus 84 ~~~r~~mv~~q~~~~~-~~~~~~~~~~~~~~~---~~~----~~--------g~~~~~~~~~~~~l~~~l~~~~~~~VLD 147 (285)
...|.+|++ |++.+. ....+.+.+...... +.. .| ...++..+.....+++.+.+.++.+|||
T Consensus 6 ~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLe 84 (212)
T PRK00312 6 SERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLE 84 (212)
T ss_pred HHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEE
Confidence 357889999 777776 556666666543211 111 01 1225678999999999999988999999
Q ss_pred EcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 148 IGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 148 iGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
+|||+|+++..++....+|+++|+++.+++.|+++++..+ +++++.+|+.+.. ...+.||+|+++.
T Consensus 85 iG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~I~~~~ 152 (212)
T PRK00312 85 IGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW------------PAYAPFDRILVTA 152 (212)
T ss_pred ECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC------------CcCCCcCEEEEcc
Confidence 9999999999888877799999999999999999987653 7999999986532 2336799999986
Q ss_pred CCCCcH-HHHHHhccCCCce
Q 023240 226 PFNIST-DVIKQLLPMGDIF 244 (285)
Q Consensus 226 P~~~~~-~i~~~l~~~g~~~ 244 (285)
+..... .+...|.++|.++
T Consensus 153 ~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 153 AAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred CchhhhHHHHHhcCCCcEEE
Confidence 654444 4444454444433
No 16
>PHA03412 putative methyltransferase; Provisional
Probab=99.51 E-value=1.2e-13 Score=120.60 Aligned_cols=108 Identities=14% Similarity=0.258 Sum_probs=84.8
Q ss_pred HHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-----CCEEEEEeCCHHHHHH
Q 023240 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGL 178 (285)
Q Consensus 104 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----~~~V~giD~~~~~v~~ 178 (285)
+.+.+.+.....++..|+ |++++.+++.++... ..+.+|||+|||+|.+++.+++. ..+|+++|+++.+++.
T Consensus 15 ~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 15 IIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred HHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 334444444555666788 999999988876442 24679999999999999998864 3589999999999999
Q ss_pred HHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 179 a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
|+++.. ++.++.+|+...++ ..+||+||+||||...
T Consensus 92 Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 92 GKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGKI 127 (241)
T ss_pred HHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCCc
Confidence 998863 68999999987542 3579999999999753
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.46 E-value=4.2e-13 Score=112.58 Aligned_cols=89 Identities=22% Similarity=0.397 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~ 205 (285)
...+++.+...++.+|||+|||+|.+++.+++... +|+++|+++.+++.+++|++.++ +++++.+|..+.
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~------ 93 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA------ 93 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT------
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc------
Confidence 34555555554678999999999999999999843 69999999999999999998774 499999998774
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNIST 231 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~ 231 (285)
.....||+|++|||++...
T Consensus 94 -------~~~~~fD~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 94 -------LPDGKFDLIVSNPPFHAGG 112 (170)
T ss_dssp -------CCTTCEEEEEE---SBTTS
T ss_pred -------ccccceeEEEEccchhccc
Confidence 2357899999999986553
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.45 E-value=5e-13 Score=103.52 Aligned_cols=73 Identities=30% Similarity=0.440 Sum_probs=61.8
Q ss_pred CCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
|+.+|||||||+|.++..+++ .+.+|+|+|+|+++++.|++++.. .++++++++|+ .... ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-----------~~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-----------DFL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-----------TTS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-----------ccC
Confidence 468999999999999999999 588999999999999999999932 25999999999 3221 234
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
..||+|+++.
T Consensus 69 ~~~D~v~~~~ 78 (112)
T PF12847_consen 69 EPFDLVICSG 78 (112)
T ss_dssp SCEEEEEECS
T ss_pred CCCCEEEECC
Confidence 6699999987
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=3e-13 Score=118.92 Aligned_cols=88 Identities=22% Similarity=0.356 Sum_probs=73.2
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhh
Q 023240 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d 207 (285)
+..+.......+|||+|||+|.+++.+|++ . +++++||+++++.+.|+++++.++ +++++++|+.++...
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~----- 110 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA----- 110 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-----
Confidence 334445555789999999999999999988 4 799999999999999999998763 999999999987642
Q ss_pred HHhhhcCCCCceEEEEcCCCCCc
Q 023240 208 LFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
....+||+||+||||...
T Consensus 111 -----~~~~~fD~Ii~NPPyf~~ 128 (248)
T COG4123 111 -----LVFASFDLIICNPPYFKQ 128 (248)
T ss_pred -----ccccccCEEEeCCCCCCC
Confidence 234569999999999644
No 20
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.9e-13 Score=122.53 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~ 205 (285)
.+.+++.+....+.+|||+|||.|.+++.+++. ..+++-+|+|..+++.|++|++.++ +..+..+|..+-
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------ 220 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------ 220 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------
Confidence 567788888777779999999999999999998 4699999999999999999998763 446777777653
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNISTDVI 234 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~ 234 (285)
-.++||.||+||||+....+.
T Consensus 221 --------v~~kfd~IisNPPfh~G~~v~ 241 (300)
T COG2813 221 --------VEGKFDLIISNPPFHAGKAVV 241 (300)
T ss_pred --------ccccccEEEeCCCccCCcchh
Confidence 234899999999998665433
No 21
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.42 E-value=2.3e-13 Score=127.37 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcccccccc
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI 201 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~~~~ 201 (285)
-.+.+++.+....+.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.|++|++.+. +++++.+|+.+.
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 3566788887655679999999999999999987 5799999999999999999987552 678888888653
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
....+||+|++||||+..
T Consensus 294 -----------~~~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 294 -----------VEPFRFNAVLCNPPFHQQ 311 (378)
T ss_pred -----------CCCCCEEEEEECcCcccC
Confidence 223579999999999754
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=2.8e-12 Score=112.13 Aligned_cols=92 Identities=24% Similarity=0.337 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~ 203 (285)
+..++..++..+...++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++|+..++ +++++++|+.+.
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---- 96 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---- 96 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----
Confidence 344555555555666788999999999999999988765 99999999999999999987554 688899998763
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.....||+|++||||...
T Consensus 97 ---------~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 97 ---------VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred ---------ccCCCeeEEEECCCCCCC
Confidence 234679999999998753
No 23
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.40 E-value=2.3e-12 Score=123.66 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~ 204 (285)
+.+++.+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|++|++.++ +++++.+|+.+....
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~-- 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD-- 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh--
Confidence 5566677777777778899999999999999999988899999999999999999987653 799999999764210
Q ss_pred hhhHHhhhcCCCCceEEEEcCCCCCcHHHHHHhcc
Q 023240 205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~l~~ 239 (285)
.. .....||+|++|||+....++++++..
T Consensus 361 ---~~---~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 361 ---QP---WALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred ---hh---hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 00 123569999999999888888877764
No 24
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=3.2e-12 Score=112.27 Aligned_cols=87 Identities=18% Similarity=0.329 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI 201 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~ 201 (285)
+..+.+.+++.+...+|.+|||+|||||..+..+++.. ++|+|+|+|+.|++.|+++....+ +++++++||+++|+
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 45566777777777789999999999999999999984 799999999999999999988643 59999999999997
Q ss_pred hhhhhhHHhhhcCCCCceEEEEc
Q 023240 202 RSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
+| .+||+|.+.
T Consensus 116 ~D------------~sFD~vt~~ 126 (238)
T COG2226 116 PD------------NSFDAVTIS 126 (238)
T ss_pred CC------------CccCEEEee
Confidence 54 667777664
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.39 E-value=4.5e-12 Score=106.99 Aligned_cols=85 Identities=28% Similarity=0.309 Sum_probs=70.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHH
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF 209 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~ 209 (285)
..+.+.+...++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++..++ +++++.+|+.+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--------- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------
Confidence 344455555567899999999999999999987799999999999999999987654 7888999987642
Q ss_pred hhhcCCCCceEEEEcCCCCC
Q 023240 210 ERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P~~~ 229 (285)
.++||+|++||||..
T Consensus 80 -----~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLP 94 (179)
T ss_pred -----CCcccEEEECCCCCC
Confidence 247999999999963
No 26
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=1.3e-12 Score=102.07 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=65.9
Q ss_pred CCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
|.+|||+|||+|.++..+++.+ .+++|+|+++..++.|+.++... ++++++++|+.+.... ...++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence 4689999999999999999987 89999999999999999998865 3799999999887511 34588
Q ss_pred ceEEEEcCCCCCc
Q 023240 218 FAKVVANIPFNIS 230 (285)
Q Consensus 218 ~D~Vv~n~P~~~~ 230 (285)
||+|++||||...
T Consensus 71 ~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 71 FDLIVTNPPYGPR 83 (117)
T ss_dssp EEEEEE--STTSB
T ss_pred eEEEEECCCCccc
Confidence 9999999999753
No 27
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.39 E-value=1.9e-12 Score=119.06 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~ 204 (285)
+.+.+.+.+++...++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|+++++.++ +++++++|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~--- 235 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT--- 235 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---
Confidence 3444444555554457899999999999999999988999999999999999999987664 79999999987642
Q ss_pred hhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhcc
Q 023240 205 MLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLP 239 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~ 239 (285)
.....||+|+.|||+... ..+++.|..
T Consensus 236 --------~~~~~~D~Vv~dPPr~G~~~~~~~~l~~ 263 (315)
T PRK03522 236 --------AQGEVPDLVLVNPPRRGIGKELCDYLSQ 263 (315)
T ss_pred --------hcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 122469999999998754 455555544
No 28
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.39 E-value=5e-12 Score=108.70 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240 126 NSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI 201 (285)
Q Consensus 126 ~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~ 201 (285)
...+.+.++..+.. .++.+|||+|||+|.+++.++.. ..+|+++|+++++++.+++|++.++ +++++++|+.+...
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~ 116 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA 116 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence 34555556665532 45789999999999999865544 5699999999999999999987654 79999999876421
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhcc
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLLP 239 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~~ 239 (285)
.....||+|++||||... ..++..|..
T Consensus 117 -----------~~~~~fDlV~~DPPy~~g~~~~~l~~l~~ 145 (199)
T PRK10909 117 -----------QPGTPHNVVFVDPPFRKGLLEETINLLED 145 (199)
T ss_pred -----------hcCCCceEEEECCCCCCChHHHHHHHHHH
Confidence 123469999999997543 344555544
No 29
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=3.7e-12 Score=117.79 Aligned_cols=95 Identities=24% Similarity=0.267 Sum_probs=83.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~ 200 (285)
-...+.++..|+....+.++.+|||+|||+|.+++.++..+.+++|+|+++.|++.|+.|++.++ +++++++|+.+++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 55678888899988888889999999999999998888779999999999999999999987653 6889999999886
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
. ....||.|++||||..
T Consensus 244 ~------------~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 244 L------------SSESVDAIATDPPYGR 260 (329)
T ss_pred c------------ccCCCCEEEECCCCcC
Confidence 4 3467999999999965
No 30
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.7e-12 Score=115.97 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=62.2
Q ss_pred EEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+|||+|||+|.+++.++... .+|+|+|+|+.+++.|++|+..++ ++.++.+|..+- ..++||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence 79999999999999999884 499999999999999999998764 566666676553 235899
Q ss_pred EEEEcCCCCCcH
Q 023240 220 KVVANIPFNIST 231 (285)
Q Consensus 220 ~Vv~n~P~~~~~ 231 (285)
+||+||||-..+
T Consensus 179 lIVsNPPYip~~ 190 (280)
T COG2890 179 LIVSNPPYIPAE 190 (280)
T ss_pred EEEeCCCCCCCc
Confidence 999999995544
No 31
>PHA03411 putative methyltransferase; Provisional
Probab=99.37 E-value=3.5e-12 Score=113.78 Aligned_cols=93 Identities=16% Similarity=0.305 Sum_probs=76.2
Q ss_pred cCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccc
Q 023240 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196 (285)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~ 196 (285)
.|+ |.+++.++..++. ....+.+|||+|||+|.+++.++.. +.+|+++|+++.+++.+++++ ++++++++|+
T Consensus 45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~ 118 (279)
T PHA03411 45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDV 118 (279)
T ss_pred cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECch
Confidence 466 9999999866542 3334579999999999999988775 469999999999999999875 4789999999
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.+.. ....||+||+||||...
T Consensus 119 ~e~~-------------~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 119 FEFE-------------SNEKFDVVISNPPFGKI 139 (279)
T ss_pred hhhc-------------ccCCCcEEEEcCCcccc
Confidence 8763 23579999999999753
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=1.2e-11 Score=110.85 Aligned_cols=132 Identities=16% Similarity=0.268 Sum_probs=88.2
Q ss_pred cccchHHHHHHHHHHHhcCCCchHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHH
Q 023240 79 IAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158 (285)
Q Consensus 79 ~~~~~~~~r~~mv~~q~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~ 158 (285)
+++.+...|...++++......+......++.... ...+|. ...+.+.+++.+.+.++.+|||+|||+|.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~--~~s~g~----~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~ 90 (261)
T PLN02233 17 LAGNSRSRRRDVVKCANERQALFNRIAPVYDNLND--LLSLGQ----HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFL 90 (261)
T ss_pred ccccchhhcCChhhhHHHHHHHHHHhhhHHHHhhh--hhcCCh----hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHH
Confidence 34555556666666654444444433333322100 001222 233444556667777889999999999999999
Q ss_pred HHHh-C--CEEEEEeCCHHHHHHHHHHhhc-----CCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 159 LLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 159 la~~-~--~~V~giD~~~~~v~~a~~~~~~-----~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+++. + ++|+|+|+|++|++.|+++... .++++++++|+.++|+ +.++||.|+++..++
T Consensus 91 la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------------~~~sfD~V~~~~~l~ 156 (261)
T PLN02233 91 LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------------DDCYFDAITMGYGLR 156 (261)
T ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------------CCCCEeEEEEecccc
Confidence 8875 3 5999999999999999877531 2489999999999875 346799999875544
No 33
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.35 E-value=5.6e-12 Score=114.24 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=66.2
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhh
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|+..++ +++++++|+.+.
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~------------ 184 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA------------ 184 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc------------
Confidence 33344679999999999999999986 5799999999999999999988653 699999998653
Q ss_pred hcCCCCceEEEEcCCCCC
Q 023240 212 RKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~P~~~ 229 (285)
.....||+|++||||..
T Consensus 185 -~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 185 -LPGRKYDLIVSNPPYVD 201 (284)
T ss_pred -cCCCCccEEEECCCCCC
Confidence 12347999999999953
No 34
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.33 E-value=7.8e-12 Score=117.64 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhh
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~ 205 (285)
+++.++..+ .++.+|||+|||+|.+++.++.. +.+|+|+|+|+++++.|++|++.++ +++++++|+.+...
T Consensus 241 LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l---- 314 (423)
T PRK14966 241 LVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM---- 314 (423)
T ss_pred HHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc----
Confidence 344444433 34569999999999999998875 6799999999999999999987665 79999999876432
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
...++||+|++||||...
T Consensus 315 -------~~~~~FDLIVSNPPYI~~ 332 (423)
T PRK14966 315 -------PSEGKWDIIVSNPPYIEN 332 (423)
T ss_pred -------ccCCCccEEEECCCCCCc
Confidence 123579999999999543
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.33 E-value=4.9e-12 Score=111.40 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (285)
..+.+.+++.+...++.+|||+|||||.++..+++. .++|+|+|+++.|++.|+++.... .+|+++++|+.++|+
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 444556666777778999999999999999999876 369999999999999999998764 389999999999996
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcC
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
+ .++||.|++..
T Consensus 113 ~------------d~sfD~v~~~f 124 (233)
T PF01209_consen 113 P------------DNSFDAVTCSF 124 (233)
T ss_dssp -------------TT-EEEEEEES
T ss_pred C------------CCceeEEEHHh
Confidence 3 47789998753
No 36
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.33 E-value=1.8e-11 Score=115.13 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=80.5
Q ss_pred ccCCHHHHHHHH----HHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccc
Q 023240 123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (285)
Q Consensus 123 ~~~~~~~~~~l~----~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~ 196 (285)
+.++..+.+.+. .++...++.+|||+|||+|.+++.++..+.+|+|||+++.+++.|++|++.++ +++++.+|+
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 445555555544 34443456799999999999999999888899999999999999999997664 899999999
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc-HHHHHHhcc
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLLP 239 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~ 239 (285)
.+... .....||+||.|||+... ..+++.+..
T Consensus 291 ~~~~~-----------~~~~~~D~vi~DPPr~G~~~~~l~~l~~ 323 (374)
T TIGR02085 291 AKFAT-----------AQMSAPELVLVNPPRRGIGKELCDYLSQ 323 (374)
T ss_pred HHHHH-----------hcCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence 76531 112458999999999743 455565543
No 37
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.33 E-value=2.9e-11 Score=101.55 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=89.9
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~ 198 (285)
+++.+++....+..|.+.++++++|||||||.++..++.. .++|++||.++++++..++|.++. +|++++.||+-+
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 6899999999999999999999999999999999999954 579999999999999999999876 499999999987
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH----HhccCCCcee
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK----QLLPMGDIFS 245 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~----~l~~~g~~~~ 245 (285)
.- .+...+|.||.+=- ...+.+++ +|.++|+++-
T Consensus 96 ~L------------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 96 AL------------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred hh------------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEE
Confidence 63 23347899988755 44455554 4445555553
No 38
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.32 E-value=1.4e-11 Score=114.26 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~ 206 (285)
.+.+++.+......+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++++.++ ..+++.+|+.+.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------- 257 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------- 257 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-------
Confidence 355666665555568999999999999999987 3599999999999999999988764 556777777542
Q ss_pred hHHhhhcCCCCceEEEEcCCCCC
Q 023240 207 SLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
..+.||+||+||||+.
T Consensus 258 -------~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 258 -------IKGRFDMIISNPPFHD 273 (342)
T ss_pred -------cCCCccEEEECCCccC
Confidence 2367999999999975
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=3.8e-11 Score=94.22 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (285)
...++...+++.+.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++.. ++++++.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 3 TKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred chHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 34566777888888777889999999999999999986 469999999999999999988754 47899999987532
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF 244 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~ 244 (285)
. .....||.|++..+......+++ +++.+++.+
T Consensus 83 ~-----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 83 E-----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI 118 (124)
T ss_pred h-----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence 1 12357999998765544333332 334444443
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.32 E-value=3.5e-11 Score=102.24 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=84.3
Q ss_pred CcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc
Q 023240 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF 196 (285)
Q Consensus 121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~ 196 (285)
+.+++.+.+...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++... ++++++.+|+
T Consensus 11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 457778888888889998888899999999999999999886 469999999999999999988755 3789999987
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF 244 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~ 244 (285)
.. + ....||+|+++........+++ +++..++.+
T Consensus 91 ~~-~-------------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l 127 (187)
T PRK08287 91 PI-E-------------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRL 127 (187)
T ss_pred hh-h-------------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEE
Confidence 42 1 1256899998765443344332 334444444
No 41
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.31 E-value=9.4e-12 Score=106.29 Aligned_cols=177 Identities=22% Similarity=0.391 Sum_probs=138.4
Q ss_pred HHHHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhh
Q 023240 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFA 184 (285)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~ 184 (285)
++..-+.+++++-+.|||.++..+.+.++.........-|.|||.|.|.++..+...+ .++..+|.+..++.-.+...+
T Consensus 15 e~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 15 EIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence 3333345677778999999999999999999988778899999999999999999885 478889999999888777666
Q ss_pred cCC-CeEEEEcccccccchhhhhhHHhhh-cCCCCceEEEEcCCCCCcHHHHHHhcc----CCCce----eeeEeeehHh
Q 023240 185 SID-QLKVLQEDFVKCHIRSHMLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLLP----MGDIF----SEVVLLLQEE 254 (285)
Q Consensus 185 ~~~-~v~~~~gD~~~~~~~~~~~d~~~~~-~~~~~~D~Vv~n~P~~~~~~i~~~l~~----~g~~~----~~~~~~~~~~ 254 (285)
..+ +..++++|++.....+...+-.... .+....-.||+|+||++.++++-+++. ..+.| ..+...++.+
T Consensus 95 Aa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~E 174 (326)
T KOG0821|consen 95 AAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKE 174 (326)
T ss_pred cCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHH
Confidence 554 8899999998877654433222211 223445679999999999998755443 22333 3677899999
Q ss_pred HHHHhcCCCCCCCCchhHHHHHHHhhccc
Q 023240 255 TALRLVEPSLRTSEYRPINIFVNFYSGQF 283 (285)
Q Consensus 255 ~~~rl~~~~~~~~~y~~l~~~~~~f~~~~ 283 (285)
.++||+ +.-+++.-.++|+|-|+.|++.
T Consensus 175 VAeRlC-aP~~~~qRsRlSvMSQy~~EP~ 202 (326)
T KOG0821|consen 175 VAERLC-APTGSKQRSRLSVMSQYLCEPR 202 (326)
T ss_pred HHHHhc-ccccccchhhHHHHHHHhcCce
Confidence 999999 7778899999999999999973
No 42
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.31 E-value=2.6e-11 Score=106.19 Aligned_cols=92 Identities=14% Similarity=0.261 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccccc
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (285)
.......++..+.+.++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++.... ++++++++|+.+.+
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 4555677888888888899999999999999999875 369999999999999999988644 48999999998876
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
+ ..++||+|+++..++.
T Consensus 110 ~------------~~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 110 F------------DDNSFDYVTIGFGLRN 126 (231)
T ss_pred C------------CCCCccEEEEeccccc
Confidence 3 3467999998766543
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.31 E-value=2.8e-11 Score=103.92 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHh
Q 023240 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFE 210 (285)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~ 210 (285)
+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ +++++++|+.+.++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 92 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF--------- 92 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------
Confidence 3444455567899999999999999999999999999999999999998876543 68889999877642
Q ss_pred hhcCCCCceEEEEcCCCCC
Q 023240 211 RRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 211 ~~~~~~~~D~Vv~n~P~~~ 229 (285)
.+.||+|+++..++.
T Consensus 93 ----~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 93 ----DGEYDFILSTVVLMF 107 (197)
T ss_pred ----CCCcCEEEEecchhh
Confidence 256999999877543
No 44
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.31 E-value=2.6e-11 Score=103.98 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHh
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE 210 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~ 210 (285)
.+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+++.|++.++++....+ ++++..+|+...++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--------- 91 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL--------- 91 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence 44455555567899999999999999999999999999999999999998876543 56777777765432
Q ss_pred hhcCCCCceEEEEcCCCCCc
Q 023240 211 RRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 211 ~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.+.||+|+++.+++..
T Consensus 92 ----~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 92 ----NEDYDFIFSTVVFMFL 107 (195)
T ss_pred ----cCCCCEEEEecccccC
Confidence 2569999999887543
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.30 E-value=2.3e-11 Score=109.10 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=80.0
Q ss_pred ccCCcccCCH--HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc
Q 023240 118 SLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194 (285)
Q Consensus 118 ~~g~~~~~~~--~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g 194 (285)
.||..+..+- +....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.|+++....++++++.+
T Consensus 27 ~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~ 106 (263)
T PTZ00098 27 IFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN 106 (263)
T ss_pred HhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEEC
Confidence 3666566653 55778888888889999999999999999998875 77999999999999999998765568999999
Q ss_pred ccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
|+.+.++ +.++||+|+++.
T Consensus 107 D~~~~~~------------~~~~FD~V~s~~ 125 (263)
T PTZ00098 107 DILKKDF------------PENTFDMIYSRD 125 (263)
T ss_pred CcccCCC------------CCCCeEEEEEhh
Confidence 9987764 346899999964
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.30 E-value=2.8e-11 Score=107.48 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~ 205 (285)
...+...+++.+...++.+|||+|||+|.++..++..+.+|+++|+++.|++.|+++.. .+.++++|+.++++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~---- 99 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPL---- 99 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcC----
Confidence 35566777787776667899999999999999998888999999999999999998753 45789999988764
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCCcH---HHH---HHhccCCCcee
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNIST---DVI---KQLLPMGDIFS 245 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~---~~l~~~g~~~~ 245 (285)
....||+|++|.++++.. .++ .+++.+|+.+.
T Consensus 100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence 346799999998876532 222 34455555554
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=4e-11 Score=102.13 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=70.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++.+|||+|||+|..+..++.. +++|+++|.++.|++.|+++.+..+ +++++++|+.+.+ . .+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~------------~-~~ 111 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG------------Q-EE 111 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC------------C-CC
Confidence 4789999999999999999874 6799999999999999999988664 6999999998864 2 46
Q ss_pred CceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240 217 GFAKVVANIPFNISTDVI---KQLLPMGDIFS 245 (285)
Q Consensus 217 ~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~ 245 (285)
+||+|+++. +.....++ .+++.+|+.+.
T Consensus 112 ~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 112 KFDVVTSRA-VASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred CccEEEEcc-ccCHHHHHHHHHHhcCCCeEEE
Confidence 799999974 22222322 34445555554
No 48
>PRK14968 putative methyltransferase; Provisional
Probab=99.29 E-value=5.5e-11 Score=100.34 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--C--eEEEEcccccccchhhh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~--v~~~~gD~~~~~~~~~~ 205 (285)
...+++.+...++.+|||+|||+|.++..++..+.+|+++|+++++++.+++++..++ + +.++++|+.+..
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-----
Confidence 4455555555678899999999999999999888999999999999999999886543 2 889999986632
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCC
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
....||+|++|+||..
T Consensus 87 --------~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 87 --------RGDKFDVILFNPPYLP 102 (188)
T ss_pred --------cccCceEEEECCCcCC
Confidence 2347999999999865
No 49
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.3e-11 Score=115.80 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=100.2
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEE
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKV 191 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~ 191 (285)
.++.+|+-|....+.++...+++++..+++++||+.||.|.+++.+|....+|+|+|+++++++.|++|++.++ |+++
T Consensus 266 ~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 266 SPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence 34445555666667788888888888888999999999999999999989999999999999999999999875 8999
Q ss_pred EEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH-HHHHHhccCCCc
Q 023240 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDI 243 (285)
Q Consensus 192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~-~i~~~l~~~g~~ 243 (285)
+.+|+.++.... .....+|.||.+||..... ++++.+...+..
T Consensus 346 ~~~~ae~~~~~~---------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~ 389 (432)
T COG2265 346 IAGDAEEFTPAW---------WEGYKPDVVVVDPPRAGADREVLKQLAKLKPK 389 (432)
T ss_pred EeCCHHHHhhhc---------cccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence 999999876421 2345789999999997776 788887766554
No 50
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=2e-11 Score=111.84 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=63.5
Q ss_pred CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++|++.++ +++++++|+.+. .....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------------l~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------------LPGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------------CCCCC
Confidence 68999999999999999986 5699999999999999999988653 699999998653 12357
Q ss_pred ceEEEEcCCCCC
Q 023240 218 FAKVVANIPFNI 229 (285)
Q Consensus 218 ~D~Vv~n~P~~~ 229 (285)
||+|++||||..
T Consensus 202 fDlIvsNPPyi~ 213 (307)
T PRK11805 202 YDLIVSNPPYVD 213 (307)
T ss_pred ccEEEECCCCCC
Confidence 999999999954
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.28 E-value=2.6e-11 Score=99.52 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=64.5
Q ss_pred CCCEEEEEcCcccHHHHHHHH-h--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~-~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++.+|||+|||+|.++..++. . +.+++|+|++++|++.|+++++.. ++++++++|+.+++. .-.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~-----------~~~ 71 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ-----------ELE 71 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-----------CSS
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-----------ccC
Confidence 578999999999999999994 3 679999999999999999987754 489999999999651 101
Q ss_pred CCceEEEEcCCCCC
Q 023240 216 SGFAKVVANIPFNI 229 (285)
Q Consensus 216 ~~~D~Vv~n~P~~~ 229 (285)
..||+|+++.+++.
T Consensus 72 ~~~D~I~~~~~l~~ 85 (152)
T PF13847_consen 72 EKFDIIISNGVLHH 85 (152)
T ss_dssp TTEEEEEEESTGGG
T ss_pred CCeeEEEEcCchhh
Confidence 68999999987643
No 52
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=3.5e-11 Score=107.19 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240 127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 127 ~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (285)
+.+++.++..+... .+.+|||+|||+|.+++.++.. +.+|+++|+|+.+++.|++|++.++ ++++++|+.+....
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~- 148 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT- 148 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch-
Confidence 44455555554422 3458999999999999999875 5699999999999999999987654 68899998763210
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
...+.||+||+||||..
T Consensus 149 ---------~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 149 ---------ALRGRVDILAANAPYVP 165 (251)
T ss_pred ---------hcCCCEeEEEECCCCCC
Confidence 11256999999999964
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.28 E-value=3.3e-11 Score=102.19 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++.+|||+|||+|.++..++.. +.+|+|+|.++.+++.++++.+..+ +++++++|+.+++ ..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-------------~~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-------------HEE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-------------ccC
Confidence 4789999999999999998865 4689999999999999998887653 7999999998863 236
Q ss_pred CceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240 217 GFAKVVANIPFNISTDVI---KQLLPMGDIFS 245 (285)
Q Consensus 217 ~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~ 245 (285)
.||+|+++. +.....++ .+++..|+.+.
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEE
Confidence 799999986 43333333 34555555543
No 54
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.27 E-value=2.5e-11 Score=116.13 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=83.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~ 200 (285)
....+.+...+.+.+.+.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..++ +++++.+|+.+..
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 33334556677777777777899999999999999999988899999999999999999987654 8999999997642
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCCCC-cHHHHHHhc
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~-~~~i~~~l~ 238 (285)
. . +. .....||+|+.|||+.. ...+++.+.
T Consensus 354 ~-~----~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 354 P-K----QP---WAGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred H-H----HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 1 0 00 12346899999999865 566666554
No 55
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.27 E-value=3.3e-11 Score=109.18 Aligned_cols=92 Identities=17% Similarity=0.301 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240 127 SEINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~ 200 (285)
+.++..++..+....+ .+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++|+..++ +++++.+|+.+.
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~- 177 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP- 177 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-
Confidence 4555555554432233 68999999999999999986 4699999999999999999987653 499999998763
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~ 231 (285)
.....||+|++||||....
T Consensus 178 ------------~~~~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 178 ------------LAGQKIDIIVSNPPYIDEE 196 (284)
T ss_pred ------------CcCCCccEEEECCCCCCcc
Confidence 1223799999999996543
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.27 E-value=1.6e-11 Score=106.63 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=75.8
Q ss_pred HHhCCCCCccccCCcccCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (285)
Q Consensus 108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~ 184 (285)
++....++...|.+-...++--...+.+.... -++.+|||+|||.|.++..||+.|+.|+|+|+++++++.|+.+..
T Consensus 23 la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~ 102 (243)
T COG2227 23 LASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHAL 102 (243)
T ss_pred HHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh
Confidence 33333344444444334444444444444442 368899999999999999999999999999999999999999987
Q ss_pred cCC-CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240 185 SID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 185 ~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
..+ ++.+....++++. ...++||+|++.
T Consensus 103 e~gv~i~y~~~~~edl~------------~~~~~FDvV~cm 131 (243)
T COG2227 103 ESGVNIDYRQATVEDLA------------SAGGQFDVVTCM 131 (243)
T ss_pred hccccccchhhhHHHHH------------hcCCCccEEEEh
Confidence 665 5667777776654 234789999985
No 57
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.27 E-value=1.8e-11 Score=110.26 Aligned_cols=89 Identities=13% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-----~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++.+|||+|||+|+++..+++. +..|+|+|+|+.+++.|+++. +++.+.++|+.++|+ ..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~------------~~ 149 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPF------------AD 149 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCC------------cC
Confidence 4578999999999999998865 237999999999999998774 579999999998875 34
Q ss_pred CCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240 216 SGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (285)
Q Consensus 216 ~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~ 244 (285)
+.||+|++...-....++.+.|.++|.++
T Consensus 150 ~sfD~I~~~~~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 150 QSLDAIIRIYAPCKAEELARVVKPGGIVI 178 (272)
T ss_pred CceeEEEEecCCCCHHHHHhhccCCCEEE
Confidence 67999988644334445545555554444
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=7.6e-11 Score=109.53 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcC-----CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240 128 EINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (285)
Q Consensus 128 ~~~~~l~~~l~~-----~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~ 198 (285)
.+...+++.+.+ .++.+|||||||+|.++..+++. +++|+|||+++.+++.|+++.+.. ++++++++|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 456667777766 56789999999999999999987 789999999999999999987654 379999999998
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
+++ ..+.||+|+++-..
T Consensus 180 ~~~------------~~~~FD~V~s~~~~ 196 (340)
T PLN02244 180 QPF------------EDGQFDLVWSMESG 196 (340)
T ss_pred CCC------------CCCCccEEEECCch
Confidence 874 34689999986543
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=9.2e-11 Score=100.70 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=85.0
Q ss_pred cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcc
Q 023240 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (285)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD 195 (285)
..++.+++....+..+.+.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.|+++++.++ +++++.+|
T Consensus 21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d 100 (198)
T PRK00377 21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100 (198)
T ss_pred CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 35777888888888889889999999999999999998864 3689999999999999999987653 78999999
Q ss_pred cccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH---HhccCCCce
Q 023240 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK---QLLPMGDIF 244 (285)
Q Consensus 196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~---~l~~~g~~~ 244 (285)
+.+... ...+.||.|+++........+++ +++.+++.+
T Consensus 101 ~~~~l~-----------~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~l 141 (198)
T PRK00377 101 APEILF-----------TINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRI 141 (198)
T ss_pred hhhhHh-----------hcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEE
Confidence 876421 12357999999765444444443 334444544
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=2.5e-11 Score=108.16 Aligned_cols=83 Identities=25% Similarity=0.339 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d 207 (285)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|+++ +++++++|+.+++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~------- 85 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK------- 85 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC-------
Confidence 356677777778899999999999999999987 67999999999999999764 6889999998763
Q ss_pred HHhhhcCCCCceEEEEcCCCCCc
Q 023240 208 LFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
..+.||+|+++..++..
T Consensus 86 ------~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 86 ------PKPDTDVVVSNAALQWV 102 (255)
T ss_pred ------CCCCceEEEEehhhhhC
Confidence 23679999999876554
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=4.3e-11 Score=106.70 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=77.7
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhh
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d 207 (285)
..++..+. .++.+|||+|||+|.++..+++.+.+|+++|++++|++.|+++.... ++++++++|+.+++.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~------ 107 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ------ 107 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh------
Confidence 34555555 35679999999999999999999999999999999999999988754 378999999988642
Q ss_pred HHhhhcCCCCceEEEEcCCCCCc---HH---HHHHhccCCCcee
Q 023240 208 LFERRKSSSGFAKVVANIPFNIS---TD---VIKQLLPMGDIFS 245 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~~~---~~---i~~~l~~~g~~~~ 245 (285)
.....||+|+++..++.. .. .+.+++.+|+.+.
T Consensus 108 -----~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 108 -----HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred -----hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 134679999987664422 22 2235555666664
No 62
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=7.2e-11 Score=108.53 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=86.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~ 197 (285)
+...+.+...+++.+.+.++.+|||||||+|+++..+++.. ..|+++|+++++++.|+++++..+ ++.++.+|+.
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 56678889999999998888999999999999999999862 379999999999999999887653 7999999987
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCC-CCcHHHHHHhccCCCce
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIF 244 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~-~~~~~i~~~l~~~g~~~ 244 (285)
+... ....||+|+.+... +.+...+++|.++|.++
T Consensus 142 ~~~~------------~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 142 YGVP------------EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred hccc------------ccCCccEEEECCchHHhHHHHHHhcCCCCEEE
Confidence 6542 23569999986433 22344556666665543
No 63
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=6.7e-11 Score=104.53 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccch
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~ 202 (285)
..++..++..+.. .+.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+.++...+ +++++++|+.+.
T Consensus 74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--- 149 (251)
T TIGR03534 74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--- 149 (251)
T ss_pred HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---
Confidence 4555666665542 4568999999999999999986 5699999999999999999987653 699999998763
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
....+||+|++||||..
T Consensus 150 ----------~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 150 ----------LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred ----------CcCCceeEEEECCCCCc
Confidence 23467999999999974
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1.6e-10 Score=103.66 Aligned_cols=91 Identities=22% Similarity=0.357 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh-cC-CCeEEEEcccccccch
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIR 202 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~-~~-~~v~~~~gD~~~~~~~ 202 (285)
+.+++.++......++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|++++. .. .+++++.+|+.+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-- 171 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-- 171 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence 455566655555567789999999999999999987 4799999999999999999987 22 47999999985531
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
..+.||+|++||||...
T Consensus 172 -----------~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 172 -----------PGGRFDLIVSNPPYIPE 188 (275)
T ss_pred -----------CCCceeEEEECCCcCCc
Confidence 23679999999999643
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.23 E-value=2.3e-11 Score=103.68 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=80.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhH
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~ 208 (285)
..++..+.+....+|.|+|||+|.+|..++++ ++.|+|||.|++|++.|+.+. +++++..+|+.++.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~-------- 88 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK-------- 88 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--------
Confidence 45666777778889999999999999999998 789999999999999998876 68999999999984
Q ss_pred HhhhcCCCCceEEEEcCCCCCcH-------HHHHHhccCCCcee
Q 023240 209 FERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDIFS 245 (285)
Q Consensus 209 ~~~~~~~~~~D~Vv~n~P~~~~~-------~i~~~l~~~g~~~~ 245 (285)
.+...|++++|--+++.. ..+.+|.++|-+-.
T Consensus 89 -----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 89 -----PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred -----CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 456789999998777654 33445545544433
No 66
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.1e-11 Score=97.67 Aligned_cols=103 Identities=22% Similarity=0.333 Sum_probs=85.7
Q ss_pred CccccCCcccCCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC-C
Q 023240 115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-Q 188 (285)
Q Consensus 115 ~~~~~g~~~~~~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~-~ 188 (285)
++-.+.| |.+.++++..|+..+.. ..|++++|+|||+|.+....+..+ ..|+|+|+++++++.+.+|.+... +
T Consensus 19 pk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 19 PKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred cchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence 4445666 99999999998887753 357899999999999997776654 579999999999999999988765 8
Q ss_pred eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
+.++++|+.+.- ...+.||.++.||||...
T Consensus 98 idlLqcdildle------------~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 98 IDLLQCDILDLE------------LKGGIFDTAVINPPFGTK 127 (185)
T ss_pred hheeeeeccchh------------ccCCeEeeEEecCCCCcc
Confidence 899999998875 345889999999999643
No 67
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.21 E-value=1.4e-10 Score=104.44 Aligned_cols=82 Identities=26% Similarity=0.367 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchh
Q 023240 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (285)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~ 203 (285)
..++.+++.+.+++|.+|||||||.|.++..+++. |++|+||.+|++..+.++++++..+ ++++...|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 34667888889999999999999999999999998 9999999999999999999998764 7999999988764
Q ss_pred hhhhHHhhhcCCCCceEEEEc
Q 023240 204 HMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n 224 (285)
.+||.|++-
T Consensus 126 ------------~~fD~IvSi 134 (273)
T PF02353_consen 126 ------------GKFDRIVSI 134 (273)
T ss_dssp -------------S-SEEEEE
T ss_pred ------------CCCCEEEEE
Confidence 389999985
No 68
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.21 E-value=8e-11 Score=114.69 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=64.4
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|+..++ +++++.+|+.+. ....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-------------~~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-------------IEKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------------CcCC
Confidence 468999999999999998875 5799999999999999999987553 689999998652 1235
Q ss_pred CceEEEEcCCCCCcH
Q 023240 217 GFAKVVANIPFNIST 231 (285)
Q Consensus 217 ~~D~Vv~n~P~~~~~ 231 (285)
.||+||+||||....
T Consensus 206 ~fDlIvsNPPYi~~~ 220 (506)
T PRK01544 206 KFDFIVSNPPYISHS 220 (506)
T ss_pred CccEEEECCCCCCch
Confidence 799999999997543
No 69
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=8.3e-11 Score=105.29 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhh
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~ 204 (285)
.++.+++.+.+++|.+|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++...+ +++++..|..++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----
Confidence 4677889999999999999999999999999998 8999999999999999999887653 8999999998874
Q ss_pred hhhHHhhhcCCCCceEEEEcC
Q 023240 205 MLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
+.||.||+--
T Consensus 136 -----------e~fDrIvSvg 145 (283)
T COG2230 136 -----------EPFDRIVSVG 145 (283)
T ss_pred -----------cccceeeehh
Confidence 3389998843
No 70
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.20 E-value=1.4e-10 Score=103.40 Aligned_cols=86 Identities=19% Similarity=0.341 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhh
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~ 206 (285)
....++..+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|++++ +++.++.+|+.++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~------ 89 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ------ 89 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC------
Confidence 4556677777778899999999999999999986 579999999999999999886 47899999997653
Q ss_pred hHHhhhcCCCCceEEEEcCCCCCc
Q 023240 207 SLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
....||+|+++..++..
T Consensus 90 -------~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 90 -------PPQALDLIFANASLQWL 106 (258)
T ss_pred -------CCCCccEEEEccChhhC
Confidence 23579999999887544
No 71
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.19 E-value=2.2e-10 Score=97.02 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=74.5
Q ss_pred cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCE---------EEEEeCCHHHHHHHHHHhhcCC---
Q 023240 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GAT---------VLAIEKDQHMVGLVRERFASID--- 187 (285)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~---------V~giD~~~~~v~~a~~~~~~~~--- 187 (285)
.-.+.+.++..|+....+.++..+||..||+|.+.+..+.. ... ++|.|+++++++.|+.|++..+
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 35677889999999999999999999999999999887665 333 8899999999999999998654
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.+.+..+|+.++++ ..+.+|.||+||||...
T Consensus 89 ~i~~~~~D~~~l~~------------~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 89 YIDFIQWDARELPL------------PDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp GEEEEE--GGGGGG------------TTSBSCEEEEE--STTS
T ss_pred ceEEEecchhhccc------------ccCCCCEEEECcchhhh
Confidence 68999999999873 34678999999999865
No 72
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=4.1e-10 Score=97.67 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=87.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEE-cc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED 195 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~-gD 195 (285)
++..++....+...+...++++|||||+++|+++++||.. .++++++|+++++.+.|++|+++.+ +|+++. ||
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 4455888888888888888999999999999999999985 4699999999999999999999875 688888 58
Q ss_pred cccccchhhhhhHHhhhcCCCCceEEEEcC---CCCCcHHHHHHhccCCCcee
Q 023240 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~---P~~~~~~i~~~l~~~g~~~~ 245 (285)
+.+.--. ...++||+||.+- .|-..-+....++.+|+++.
T Consensus 121 al~~l~~----------~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 121 ALDVLSR----------LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred HHHHHHh----------ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 8775310 1357899999973 23222344445566666664
No 73
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1e-10 Score=105.53 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-C--
Q 023240 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q-- 188 (285)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~-- 188 (285)
++|.-.||+-+...-.+.-..++.+.. ++.+|||+|||+|.+++++++.|+ +|+|+|+|+.+++.|++|+..|+ .
T Consensus 135 lDPGlAFGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~ 213 (300)
T COG2264 135 LDPGLAFGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL 213 (300)
T ss_pred EccccccCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchh
Confidence 455667876444444444444444333 789999999999999999999986 69999999999999999998775 1
Q ss_pred eEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 189 v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
++....+..+. ...++||+||+|.
T Consensus 214 ~~~~~~~~~~~-------------~~~~~~DvIVANI 237 (300)
T COG2264 214 VQAKGFLLLEV-------------PENGPFDVIVANI 237 (300)
T ss_pred hhcccccchhh-------------cccCcccEEEehh
Confidence 22333333332 2346899999996
No 74
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=1.1e-10 Score=89.24 Aligned_cols=79 Identities=24% Similarity=0.439 Sum_probs=61.0
Q ss_pred EEEEcCcccHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 145 VLDiGcG~G~~t~~la~~~-----~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
|||+|||+|..+..+++.. .+++|+|+|++|++.++++....+ +++++++|+.+++. ..++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------------~~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------------SDGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH------------HSSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc------------cCCCe
Confidence 7999999999999999863 799999999999999999986543 89999999999863 34689
Q ss_pred eEEEE-cC-CCCCcHHHHH
Q 023240 219 AKVVA-NI-PFNISTDVIK 235 (285)
Q Consensus 219 D~Vv~-n~-P~~~~~~i~~ 235 (285)
|+|++ .. ..+...+.+.
T Consensus 69 D~v~~~~~~~~~~~~~~~~ 87 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELE 87 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHH
T ss_pred eEEEEcCCccCCCCHHHHH
Confidence 99999 34 2334443333
No 75
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.18 E-value=2.6e-10 Score=107.73 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~ 197 (285)
++.+....+..+..+. ++++|||+|||+|.+++.++..++ +|+++|+|+.+++.|++|++.++ +++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4444444455555443 578999999999999988776654 89999999999999999998653 6899999997
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
+.... +. .....||+||+|||+...
T Consensus 282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~ 306 (396)
T PRK15128 282 KLLRT-----YR---DRGEKFDVIVMDPPKFVE 306 (396)
T ss_pred HHHHH-----HH---hcCCCCCEEEECCCCCCC
Confidence 75210 00 124579999999998543
No 76
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=1.2e-10 Score=102.67 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~ 197 (285)
..++.....+...+...++++|||+|||+|+++++++.. +++|+++|+++++++.|+++++.++ +++++.||+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 456666666666667778899999999999999999875 4699999999999999999998764 7999999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcC---CCCCcHHHHHHhccCCCce
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF 244 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~---P~~~~~~i~~~l~~~g~~~ 244 (285)
+.-. .+... ...+.||+|+.+. +|...-+.+..++..|+.+
T Consensus 131 ~~L~-----~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~i 174 (234)
T PLN02781 131 SALD-----QLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGII 174 (234)
T ss_pred HHHH-----HHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEE
Confidence 7521 01000 1246799999984 3433233334455555554
No 77
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.17 E-value=1.6e-10 Score=108.20 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchh
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS 203 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~ 203 (285)
.+.+.+.+.+.+... +.+|||++||+|.+++.+++...+|+|||.++.+++.|++|+..++ +++++.+|+.+.-. .
T Consensus 192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~-~ 269 (362)
T PRK05031 192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ-A 269 (362)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH-H
Confidence 344555555555432 3579999999999999999887799999999999999999987664 89999999977421 0
Q ss_pred hhhhHHhhhc---------CCCCceEEEEcCCCCCc-HHHHHHhccC
Q 023240 204 HMLSLFERRK---------SSSGFAKVVANIPFNIS-TDVIKQLLPM 240 (285)
Q Consensus 204 ~~~d~~~~~~---------~~~~~D~Vv~n~P~~~~-~~i~~~l~~~ 240 (285)
+..... ....||+||.+||+... ..+++.|...
T Consensus 270 ----~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~ 312 (362)
T PRK05031 270 ----MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAY 312 (362)
T ss_pred ----HhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHcc
Confidence 000000 02258999999998654 5666777664
No 78
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.17 E-value=1.8e-10 Score=107.45 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred cccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (285)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~ 199 (285)
|+...+.++..+.+.+...+ .+|||+|||+|.+++.+++...+|+|||+++++++.|++|++.++ +++++.+|+.++
T Consensus 179 N~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 179 NAAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CHHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 33344556666666665333 479999999999999999887799999999999999999998664 899999999775
Q ss_pred cchhhhh-hH--Hhh-hcCCCCceEEEEcCCCCCc-HHHHHHhccC
Q 023240 200 HIRSHML-SL--FER-RKSSSGFAKVVANIPFNIS-TDVIKQLLPM 240 (285)
Q Consensus 200 ~~~~~~~-d~--~~~-~~~~~~~D~Vv~n~P~~~~-~~i~~~l~~~ 240 (285)
....... .+ ... ......+|+|+.+||.... ..+++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~ 303 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAY 303 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcC
Confidence 3100000 00 000 0001237999999997654 5666777664
No 79
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.16 E-value=7.5e-11 Score=108.48 Aligned_cols=73 Identities=25% Similarity=0.248 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++.+|||||||+|.++..+++.+++|+|||.++++++.|+.+.... .+++++++|+.+++. ..+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------------~~~~ 198 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------------EGRK 198 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------------ccCC
Confidence 5679999999999999999988999999999999999999886543 379999999988763 3467
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
||+|++.-
T Consensus 199 FD~Vi~~~ 206 (322)
T PLN02396 199 FDAVLSLE 206 (322)
T ss_pred CCEEEEhh
Confidence 99999853
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.16 E-value=4.1e-10 Score=96.45 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~ 198 (285)
+++.+++...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+++++++.++++++.. ++++++.+|+.+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 6777888888999998888899999999999999999865 579999999999999999998765 479999999865
No 81
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.15 E-value=1.6e-10 Score=86.01 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=60.0
Q ss_pred EEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240 146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 146 LDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.++.+|+.++++ +.++||.|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~------------~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPF------------PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-------------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcc------------ccccccccccc
Confidence 89999999999999999 88999999999999999998864 367799999999985 45789999998
Q ss_pred CCCCCc
Q 023240 225 IPFNIS 230 (285)
Q Consensus 225 ~P~~~~ 230 (285)
--++..
T Consensus 68 ~~~~~~ 73 (95)
T PF08241_consen 68 SVLHHL 73 (95)
T ss_dssp SHGGGS
T ss_pred cceeec
Confidence 766554
No 82
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=2.1e-10 Score=111.07 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHH
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~ 209 (285)
...++..+...++.+|||||||+|.++..+++.+.+|+|+|+++.|++.++......++++++++|+.+....
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------- 98 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------- 98 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-------
Confidence 4566667766667899999999999999999988899999999999998876544346899999999643211
Q ss_pred hhhcCCCCceEEEEcCCCCC
Q 023240 210 ERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P~~~ 229 (285)
....+||+|+++.+++.
T Consensus 99 ---~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 99 ---ISDGSVDLIFSNWLLMY 115 (475)
T ss_pred ---CCCCCEEEEehhhhHHh
Confidence 23467999999987654
No 83
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=6.5e-10 Score=94.92 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=78.5
Q ss_pred ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~ 197 (285)
..++..+...+...+.. ..+.+|||++||+|.+++.++.+|+ +|++||.++.+++.+++|++.++ +++++++|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 45555556566665532 3578999999999999999999975 89999999999999999987653 6899999996
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc--HHHHHHhc
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS--TDVIKQLL 238 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~~~l~ 238 (285)
+.-.. +. .....+|+|+.+|||... .+++..+.
T Consensus 110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 110 RALKF-----LA---KKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred HHHHH-----hh---ccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 54110 00 112358999999999642 34444443
No 84
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.14 E-value=4.1e-10 Score=98.00 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=68.2
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240 128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (285)
Q Consensus 128 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (285)
.+...+++.+. ..++.+|||+|||+|.++..++..+.+|+|+|++++|++.|++++... +++.+.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 44556666666 456789999999999999999988889999999999999999988654 27899999987752
Q ss_pred hhhhhHHhhhcCCCCceEEEEc
Q 023240 203 SHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
++||+|++.
T Consensus 118 -------------~~fD~ii~~ 126 (219)
T TIGR02021 118 -------------GEFDIVVCM 126 (219)
T ss_pred -------------CCcCEEEEh
Confidence 568998875
No 85
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=5.1e-10 Score=107.05 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=77.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC 199 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~ 199 (285)
+..+......+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+ +++++++|+.+.
T Consensus 226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 44445555566677888889999999999999999999873 599999999999999999998765 678999999875
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+.. .....||.|++|||+.
T Consensus 306 ~~~----------~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 306 AQW----------WDGQPFDRILLDAPCS 324 (427)
T ss_pred hhh----------cccCCCCEEEECCCCC
Confidence 310 1245799999999975
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.13 E-value=3.6e-10 Score=102.57 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ ++++..+|+...+ ....||
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-------------~~~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-------------IQEEYD 186 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-------------ccCCcc
Confidence 45699999999999999999999999999999999999999887554 7888888887653 246799
Q ss_pred EEEEcCCCC
Q 023240 220 KVVANIPFN 228 (285)
Q Consensus 220 ~Vv~n~P~~ 228 (285)
+|+++..++
T Consensus 187 ~I~~~~vl~ 195 (287)
T PRK12335 187 FILSTVVLM 195 (287)
T ss_pred EEEEcchhh
Confidence 999986654
No 87
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.13 E-value=8.7e-10 Score=97.92 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++... .+++++++|+.++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----------- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence 36789999999999999888762 579999999999999999998754 379999999988753
Q ss_pred cCCCCceEEEEcCCCCC
Q 023240 213 KSSSGFAKVVANIPFNI 229 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P~~~ 229 (285)
+.+|+|+++..++.
T Consensus 124 ---~~~D~vv~~~~l~~ 137 (247)
T PRK15451 124 ---ENASMVVLNFTLQF 137 (247)
T ss_pred ---CCCCEEehhhHHHh
Confidence 34799999876544
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=6.5e-10 Score=100.97 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=76.6
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---Ce
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL 189 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v 189 (285)
++...||........+...+++.+. .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++|...++ ++
T Consensus 133 dpg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~ 211 (288)
T TIGR00406 133 DPGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL 211 (288)
T ss_pred CCCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence 3444565433323333333333332 3678999999999999999888764 89999999999999999987653 45
Q ss_pred EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCcee
Q 023240 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS 245 (285)
Q Consensus 190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~~ 245 (285)
.+..+|... .....||+|++|........++ .+++.+|+.+.
T Consensus 212 ~~~~~~~~~--------------~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 212 QVKLIYLEQ--------------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred EEEeccccc--------------ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEE
Confidence 666665322 1245799999997654333332 34455555553
No 89
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.12 E-value=5e-10 Score=102.75 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEE-cccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~-gD~~~~~~~~~~~d~~~~~~ 213 (285)
.+.+|||||||+|.+...++.. +.+++|+|+|+.+++.|++|++.++ +|+++. .|..++.. .++ .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~-----~i~---~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK-----GII---H 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh-----ccc---c
Confidence 4578999999999888887765 6799999999999999999999873 566654 33322210 000 1
Q ss_pred CCCCceEEEEcCCCCCcHHH
Q 023240 214 SSSGFAKVVANIPFNISTDV 233 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~~~~i 233 (285)
....||+|++||||+.....
T Consensus 186 ~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 186 KNERFDATLCNPPFHASAAE 205 (321)
T ss_pred cCCceEEEEeCCCCcCcchh
Confidence 34679999999999876543
No 90
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.12 E-value=9.3e-10 Score=98.75 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=71.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhh
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~ 205 (285)
......+.+.++.+|||+|||+|..+..+++. .+.|+++|+++.+++.++++++..+ +++++++|+..++.
T Consensus 61 ~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~---- 136 (264)
T TIGR00446 61 MIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA---- 136 (264)
T ss_pred HHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh----
Confidence 33445667778899999999999999999875 3589999999999999999998764 78999999876542
Q ss_pred hhHHhhhcCCCCceEEEEcCCCC
Q 023240 206 LSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..+.||.|+.|||..
T Consensus 137 --------~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 137 --------AVPKFDAILLDAPCS 151 (264)
T ss_pred --------hccCCCEEEEcCCCC
Confidence 234599999999965
No 91
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=99.20 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccc
Q 023240 127 SEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (285)
Q Consensus 127 ~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~ 198 (285)
+++++.+++.+... .+..|||+|||+|.+++.++.. .+.|+|||.++.++..|.+|...+ +.+.+++-+...
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 56677777766532 4568999999999999998875 579999999999999999998765 578777554433
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~ 232 (285)
--+.... ...++.|++++||||-...+
T Consensus 211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ccccccc-------cccCceeEEecCCCcccccc
Confidence 2111000 23478999999999976654
No 92
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.11 E-value=4.7e-10 Score=96.71 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=62.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccc-ccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~-~~~~~~~~~~d~~~~~~~~ 215 (285)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++.... ++++++++|+ ..++.. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence 5679999999999999999886 468999999999999999988754 4899999999 554310 234
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
..||.|+++.|
T Consensus 110 ~~~D~V~~~~~ 120 (202)
T PRK00121 110 GSLDRIYLNFP 120 (202)
T ss_pred cccceEEEECC
Confidence 67999999854
No 93
>PRK04266 fibrillarin; Provisional
Probab=99.11 E-value=6.9e-10 Score=97.31 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=73.9
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
+.+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++.|++.+.++.+..+|+.++.+|+.+... ..+
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~---~~~----- 137 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER---YAH----- 137 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch---hhh-----
Confidence 3577888999999999999999999987 368999999999999888777655789999999875210 001
Q ss_pred cCCCCceEEEEcCCCCCc----HHHHHHhccCCCcee
Q 023240 213 KSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFS 245 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P~~~~----~~i~~~l~~~g~~~~ 245 (285)
....+|+|+++.+.... -..+.+++.+|+.+.
T Consensus 138 -l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 138 -VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred -ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEE
Confidence 12459999998664221 122344555566554
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.10 E-value=8e-10 Score=93.85 Aligned_cols=122 Identities=17% Similarity=0.357 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240 124 MLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~ 197 (285)
.+...+.+.+...++.. .+.++||+.||+|.+++..+.+|+ +|+.||.|+.+++.+++|++..+ +++++.+|+.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 44556667777777653 788999999999999999988875 89999999999999999998654 5899999976
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH---HHHHHhccCCCceeeeEeeehH
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVVLLLQE 253 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~~~l~~~g~~~~~~~~~~~~ 253 (285)
..-... . .....||+|+.+|||.... .++..+...+-+-......++.
T Consensus 103 ~~l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 103 KFLLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 542110 0 2457899999999998764 3566665443333334444443
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=3e-10 Score=103.10 Aligned_cols=104 Identities=26% Similarity=0.287 Sum_probs=68.7
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---Ce
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QL 189 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v 189 (285)
+|...||.-....-.+.-.+++.+ ..++.+|||+|||||.+++..++.|+ +|+|+|+++.+++.|++|++.|+ ++
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~ 213 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI 213 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE
T ss_pred CCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE
Confidence 455567653333333333333333 33678999999999999999999976 79999999999999999998875 33
Q ss_pred EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (285)
Q Consensus 190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~ 234 (285)
.+ ....+. ...+||+|++|.-......+.
T Consensus 214 ~v--~~~~~~--------------~~~~~dlvvANI~~~vL~~l~ 242 (295)
T PF06325_consen 214 EV--SLSEDL--------------VEGKFDLVVANILADVLLELA 242 (295)
T ss_dssp EE--SCTSCT--------------CCS-EEEEEEES-HHHHHHHH
T ss_pred EE--EEeccc--------------ccccCCEEEECCCHHHHHHHH
Confidence 33 222221 237899999998765544433
No 96
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=3.7e-10 Score=117.16 Aligned_cols=96 Identities=13% Similarity=0.221 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHhcCC-----CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC----------
Q 023240 124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------- 186 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~-----~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---------- 186 (285)
++++.....+++.+... ++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|+..+
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34444444445444322 2468999999999999999986 369999999999999999998753
Q ss_pred --------CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 187 --------~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
++++++++|+.+... .....||+||+||||-..
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~-----------~~~~~fDlIVSNPPYI~~ 216 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR-----------DNNIELDRIVGCIPQILN 216 (1082)
T ss_pred ccccccccccEEEEECchhhhcc-----------ccCCceEEEEECCCcCCC
Confidence 268999999876421 112369999999999544
No 97
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.10 E-value=7.6e-10 Score=101.37 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=75.1
Q ss_pred CccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---------hCCEEEEEeCCHHHHHHHHHHhhc
Q 023240 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---------~~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
.++..|+ |+|+..++..|+..+...++.+|+|..||+|.+...+.+ ...+++|+|+++.++..|+.++.-
T Consensus 21 ~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 21 SRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred hccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4556777 899999999999999888888999999999999887765 256899999999999999987653
Q ss_pred CC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 186 ID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 186 ~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.+ +..+..+|.+..+.. .....||+|++||||...
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~----------~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKF----------IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSC----------TST--EEEEEEE--CTCE
T ss_pred hcccccccccccccccccccc----------ccccccccccCCCCcccc
Confidence 32 456889998766431 124689999999999765
No 98
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.10 E-value=7.6e-10 Score=95.63 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.++.+|||+|||+|..+..+++. +.+++|||+|++|++.|+++. ++++++.+|+.+ ++ ..++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~~------------~~~s 105 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-PF------------KDNF 105 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-CC------------CCCC
Confidence 35678999999999999999886 679999999999999999875 367889999887 43 4578
Q ss_pred ceEEEEcCCC
Q 023240 218 FAKVVANIPF 227 (285)
Q Consensus 218 ~D~Vv~n~P~ 227 (285)
||+|+++-.+
T Consensus 106 fD~V~~~~vL 115 (204)
T TIGR03587 106 FDLVLTKGVL 115 (204)
T ss_pred EEEEEECChh
Confidence 9999997654
No 99
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.10 E-value=2.6e-10 Score=100.00 Aligned_cols=104 Identities=26% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--------CeEEEEcccccccchhhhhhHHhhhc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--------~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
|.+|||+|||+|-++..||+.|+.|+|||.++.|++.|+++....| ++++.+.|+....
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------------- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------------- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence 5789999999999999999999999999999999999999944332 2556666666642
Q ss_pred CCCCceEEEEcCC-------CCCcHHHHHHhccCCCcee---------eeEeeehHhHHHHhc
Q 023240 214 SSSGFAKVVANIP-------FNISTDVIKQLLPMGDIFS---------EVVLLLQEETALRLV 260 (285)
Q Consensus 214 ~~~~~D~Vv~n~P-------~~~~~~i~~~l~~~g~~~~---------~~~~~~~~~~~~rl~ 260 (285)
+.||+|++--- -.......+.+.++|.+|- .....+-.+...+++
T Consensus 157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv 217 (282)
T KOG1270|consen 157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV 217 (282)
T ss_pred --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc
Confidence 55999998432 2222333446667766662 223344456667766
No 100
>PLN02476 O-methyltransferase
Probab=99.09 E-value=1.7e-09 Score=97.26 Aligned_cols=117 Identities=13% Similarity=0.210 Sum_probs=87.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~ 196 (285)
....++....+...+...++++|||||||+|++++++|.. +++|+++|.+++..+.|++++++.+ +|+++.||+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 5667888888888888888999999999999999999974 5689999999999999999998764 899999999
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH---HHHHhccCCCcee
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS 245 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~---i~~~l~~~g~~~~ 245 (285)
.+.-.. +... ...+.||.||.+.+-..-.+ ....++..|+.+.
T Consensus 180 ~e~L~~-----l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 180 AESLKS-----MIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred HHHHHH-----HHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 875210 1000 12367999999977432222 2334555566553
No 101
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.09 E-value=5.7e-10 Score=95.53 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=63.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
...+|||||||+|.++..++.. +.+|+|+|+++.+++.|+++.... +|++++++|+.+++... ...+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence 4569999999999999999987 569999999999999999887754 48999999998754110 2335
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
.+|.|+.|.|
T Consensus 87 ~~d~v~~~~p 96 (194)
T TIGR00091 87 SLSKVFLNFP 96 (194)
T ss_pred ceeEEEEECC
Confidence 7999999965
No 102
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.08 E-value=3.7e-10 Score=105.36 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=78.8
Q ss_pred ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEE
Q 023240 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQ 193 (285)
Q Consensus 116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~ 193 (285)
..+|+-|....+.++..++++++..++ .|||+.||+|.+++.+|....+|+|||+++++++.|++|++.++ |++++.
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIR 250 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEE
Confidence 344455555556777778888887655 89999999999999999999999999999999999999999775 999999
Q ss_pred cccccccchhh---hhhHHhhh-cCCCCceEEEEcCCCCCcHH-HHHHh
Q 023240 194 EDFVKCHIRSH---MLSLFERR-KSSSGFAKVVANIPFNISTD-VIKQL 237 (285)
Q Consensus 194 gD~~~~~~~~~---~~d~~~~~-~~~~~~D~Vv~n~P~~~~~~-i~~~l 237 (285)
+++.++...-. .+..+... .....+|+|+.+||.....+ +++.+
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 98876532100 00000000 12236899999999876665 44444
No 103
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.07 E-value=8.8e-10 Score=100.87 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=87.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEc-ccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC 199 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~g-D~~~~ 199 (285)
-.++|++++.|+......+|+.|||.-||||.+.+...-.|++++|.|++..|+.-|+.|++.++ ...+..+ |+.++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 67889999999999999999999999999999999988889999999999999999999999774 6666666 99999
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCCCCCcH
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~ 231 (285)
|+ +...+|.|+.+|||...+
T Consensus 259 pl------------~~~~vdaIatDPPYGrst 278 (347)
T COG1041 259 PL------------RDNSVDAIATDPPYGRST 278 (347)
T ss_pred CC------------CCCccceEEecCCCCccc
Confidence 85 334799999999998765
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.07 E-value=1.2e-09 Score=105.67 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=75.6
Q ss_pred cCCcccCCHH--HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEc
Q 023240 119 LGQHYMLNSE--INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQE 194 (285)
Q Consensus 119 ~g~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~g 194 (285)
+|..+...+. ..+.+++.+.+.++.+|||||||+|..+..++.. +++|+|+|+|+.+++.|+++.... .+++++++
T Consensus 242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 3443444333 3456777777777889999999999999999886 789999999999999999887543 37999999
Q ss_pred ccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
|+.+.++ +.+.||+|++.-.+
T Consensus 322 d~~~~~~------------~~~~fD~I~s~~~l 342 (475)
T PLN02336 322 DCTKKTY------------PDNSFDVIYSRDTI 342 (475)
T ss_pred CcccCCC------------CCCCEEEEEECCcc
Confidence 9988763 34679999996443
No 105
>PRK05785 hypothetical protein; Provisional
Probab=99.07 E-value=9.2e-10 Score=96.58 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+++. ..+++|+.++|+ ..++||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~------------~d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPF------------RDKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCC------------CCCCEE
Confidence 4679999999999999999988 689999999999999998652 357899999875 447899
Q ss_pred EEEEcCCCCC
Q 023240 220 KVVANIPFNI 229 (285)
Q Consensus 220 ~Vv~n~P~~~ 229 (285)
+|+++...+.
T Consensus 113 ~v~~~~~l~~ 122 (226)
T PRK05785 113 VVMSSFALHA 122 (226)
T ss_pred EEEecChhhc
Confidence 9999866543
No 106
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.06 E-value=1.4e-09 Score=92.64 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhh
Q 023240 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
+++.++..++.++||+|||.|..++.||++|.+|+|+|.|+.+++.+++..+..+ +|+....|+.+..+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---------- 91 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---------- 91 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----------
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc----------
Confidence 4444555577899999999999999999999999999999999999988776544 68899999888753
Q ss_pred hcCCCCceEEEEc
Q 023240 212 RKSSSGFAKVVAN 224 (285)
Q Consensus 212 ~~~~~~~D~Vv~n 224 (285)
+..||+|++.
T Consensus 92 ---~~~yD~I~st 101 (192)
T PF03848_consen 92 ---PEEYDFIVST 101 (192)
T ss_dssp ---TTTEEEEEEE
T ss_pred ---cCCcCEEEEE
Confidence 3579999985
No 107
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.3e-09 Score=104.83 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~ 199 (285)
........+...+.+.++.+|||+|||+|..+..+++. +++|+++|+++.+++.+++|++..+ +++++++|+.+.
T Consensus 234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred EEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 33444555666777788899999999999999999885 4699999999999999999998764 799999999875
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
.. .....||.|++|||..
T Consensus 314 ~~-----------~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 314 HE-----------KFAEKFDKILVDAPCS 331 (444)
T ss_pred cc-----------hhcccCCEEEEcCCCC
Confidence 31 1125799999999954
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=2.8e-09 Score=99.84 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=70.1
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhh
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d 207 (285)
.++..+....+..+||||||+|.++..+|.. +..++|+|+++.+++.|.+++... +|+.++++|+..+.-.
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~----- 187 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL----- 187 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-----
Confidence 3444555556779999999999999999987 579999999999999999988765 4999999999765210
Q ss_pred HHhhhcCCCCceEEEEcCCCC
Q 023240 208 LFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
...+.+|.|+.|.|.-
T Consensus 188 -----~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 188 -----LPSNSVEKIFVHFPVP 203 (390)
T ss_pred -----CCCCceeEEEEeCCCC
Confidence 2457899999997643
No 109
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=110.37 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~ 197 (285)
++.+....+.++..+. ++.+|||+|||+|.+++.++..|+ +|++||+|+.+++.|++|++.++ +++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 3444444444444333 578999999999999999998865 69999999999999999998653 6899999997
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
++.- .....||+||+|||+..
T Consensus 600 ~~l~-----------~~~~~fDlIilDPP~f~ 620 (702)
T PRK11783 600 AWLK-----------EAREQFDLIFIDPPTFS 620 (702)
T ss_pred HHHH-----------HcCCCcCEEEECCCCCC
Confidence 6421 12467999999999853
No 110
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.04 E-value=1.5e-09 Score=96.02 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~ 199 (285)
=+.-+..|+..+.+.+|.+|||.|+|+|.++..|++. .++|++.|+.++.++.|++|++..+ ++++.+.|+.+.
T Consensus 25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence 3566788999999999999999999999999999986 4699999999999999999998763 899999999764
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHh-ccCCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQL-LPMGD 242 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l-~~~g~ 242 (285)
.+.. .....+|.||.++| +.....+.+.| .++|.
T Consensus 105 g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~ 141 (247)
T PF08704_consen 105 GFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGR 141 (247)
T ss_dssp --ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEE
T ss_pred cccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCce
Confidence 3311 12367999999977 45555555666 34433
No 111
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.04 E-value=1.6e-09 Score=97.37 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=65.2
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhh
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
..+.++.+|||+|||+|..+..++.. + .+|+++|+++.+++.|+++.... ++++++.+|+.++++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~---------- 142 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV---------- 142 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC----------
Confidence 34557899999999999988877764 3 47999999999999999987654 489999999988764
Q ss_pred hcCCCCceEEEEcCCCC
Q 023240 212 RKSSSGFAKVVANIPFN 228 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~P~~ 228 (285)
..+.||+|++|..++
T Consensus 143 --~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 143 --ADNSVDVIISNCVIN 157 (272)
T ss_pred --CCCceeEEEEcCccc
Confidence 345799999986544
No 112
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.8e-09 Score=90.60 Aligned_cols=113 Identities=18% Similarity=0.290 Sum_probs=93.3
Q ss_pred CcccCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC--------
Q 023240 121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI-------- 186 (285)
Q Consensus 121 ~~~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~-------- 186 (285)
...+..+.+...+++.|. +.+|.+.||+|+|+||++..++.. |..+.|||..++.++.+++|+.+.
T Consensus 60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~ 139 (237)
T KOG1661|consen 60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS 139 (237)
T ss_pred ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence 445667888899999988 789999999999999999998864 445699999999999999998752
Q ss_pred ----CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCCCcHHHHHHhccCCCcee
Q 023240 187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 187 ----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~~~~~i~~~l~~~g~~~~ 245 (285)
+++.++.||..... .+..+||.|... -.-..+.+.+++|+++|+++-
T Consensus 140 ~~~~~~l~ivvGDgr~g~------------~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGRKGY------------AEQAPYDAIHVGAAASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred hhccCceEEEeCCccccC------------CccCCcceEEEccCccccHHHHHHhhccCCeEEE
Confidence 37889999998875 456789999765 345667889999999988773
No 113
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.04 E-value=2.4e-09 Score=100.93 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d 207 (285)
....+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++.... ++++..+|+.++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l-------- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL-------- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc--------
Confidence 3556777888888999999999999999999886 789999999999999999988532 577888877553
Q ss_pred HHhhhcCCCCceEEEEcCCCC
Q 023240 208 LFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
.+.||.|+++..++
T Consensus 226 -------~~~fD~Ivs~~~~e 239 (383)
T PRK11705 226 -------NGQFDRIVSVGMFE 239 (383)
T ss_pred -------CCCCCEEEEeCchh
Confidence 25799999876543
No 114
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.04 E-value=1.5e-09 Score=95.82 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=62.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
++.+|||+|||+|..+..+++. +.+++|+|+++.|++.|+++++.. .+++++++|+.++++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------ 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------------ 120 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------------
Confidence 5679999999999999998874 578999999999999999988754 278999999998753
Q ss_pred CCCCceEEEEcCCCCC
Q 023240 214 SSSGFAKVVANIPFNI 229 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~ 229 (285)
+.+|+|+++..++.
T Consensus 121 --~~~d~v~~~~~l~~ 134 (239)
T TIGR00740 121 --KNASMVILNFTLQF 134 (239)
T ss_pred --CCCCEEeeecchhh
Confidence 34788888766544
No 115
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.04 E-value=1.4e-09 Score=99.77 Aligned_cols=84 Identities=25% Similarity=0.191 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEEccc
Q 023240 127 SEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDF 196 (285)
Q Consensus 127 ~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-------~~v~~~~gD~ 196 (285)
..+++.++.++... ++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++.+.. .++++..+|+
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 35566677776542 5679999999999999999999999999999999999999997643 2567888886
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
.++ .+.||+|++.-
T Consensus 207 ~~l---------------~~~fD~Vv~~~ 220 (315)
T PLN02585 207 ESL---------------SGKYDTVTCLD 220 (315)
T ss_pred hhc---------------CCCcCEEEEcC
Confidence 543 25689888753
No 116
>PRK04148 hypothetical protein; Provisional
Probab=99.03 E-value=2.1e-09 Score=86.18 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhh
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d 207 (285)
+.+.+.+.+...++.+|||||||+|. ++..|++.|.+|+++|+++.+++.++++ .++++.+|..+-++.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~----- 73 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE----- 73 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH-----
Confidence 45566666655567899999999997 8888998899999999999999999877 478999999986542
Q ss_pred HHhhhcCCCCceEEEE-cCCCCCcHHHHH
Q 023240 208 LFERRKSSSGFAKVVA-NIPFNISTDVIK 235 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~-n~P~~~~~~i~~ 235 (285)
--..+|+|.+ +||.....++++
T Consensus 74 ------~y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 74 ------IYKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred ------HHhcCCEEEEeCCCHHHHHHHHH
Confidence 1245799988 577766666655
No 117
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=90.46 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=109.6
Q ss_pred chHHHHHHHHhCCCCCccccCCcccCCHHHHHHHHHHhc---CC-CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCH
Q 023240 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---VQ-EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQ 173 (285)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~---~~-~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~ 173 (285)
.|.+-++.+++++-...-|||. -....++.++..... +. ...+|||+|||.|.+...|++.+ .+++|+|.++
T Consensus 24 ~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~ 101 (227)
T KOG1271|consen 24 AYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE 101 (227)
T ss_pred HHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence 5666666677777777778884 344555666666554 33 34599999999999999999985 4699999999
Q ss_pred HHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC-----CCcHHHHHHhccCCCcee
Q 023240 174 HMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 174 ~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~-----~~~~~i~~~l~~~g~~~~ 245 (285)
.+++.|+...+..+ .|++.+.|+.+..+...-+|++ .+.+.+|+|=..|-- ..--+.+++++.++++|.
T Consensus 102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv---lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV---LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred HHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE---eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 99999988777553 4999999999877766677777 677888888654332 122366788888888887
Q ss_pred eeEeeehH
Q 023240 246 EVVLLLQE 253 (285)
Q Consensus 246 ~~~~~~~~ 253 (285)
...+-+..
T Consensus 179 ItSCN~T~ 186 (227)
T KOG1271|consen 179 ITSCNFTK 186 (227)
T ss_pred EEecCccH
Confidence 66665444
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=3e-09 Score=101.87 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=76.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~ 197 (285)
+..+......+...+.+.++.+|||+|||+|..|..++.. +++|+++|+++.+++.++++++..+ +++++++|+.
T Consensus 219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~ 298 (431)
T PRK14903 219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE 298 (431)
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 3333444455556678888999999999999999999886 4699999999999999999998764 6899999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+++. ...+.||.|+.|+|..
T Consensus 299 ~l~~-----------~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 299 RLTE-----------YVQDTFDRILVDAPCT 318 (431)
T ss_pred hhhh-----------hhhccCCEEEECCCCC
Confidence 7641 1235699999999973
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.02 E-value=3.8e-09 Score=91.88 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeEEEEccccc
Q 023240 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (285)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~~~~gD~~~ 198 (285)
.+..+...++.+|||+|||.|..+..||++|.+|+|||+|+.+++.+..... ...+|+++++|+.+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 4444433466799999999999999999999999999999999998644221 12368999999998
Q ss_pred cc
Q 023240 199 CH 200 (285)
Q Consensus 199 ~~ 200 (285)
++
T Consensus 106 ~~ 107 (213)
T TIGR03840 106 LT 107 (213)
T ss_pred CC
Confidence 76
No 120
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.02 E-value=1.6e-09 Score=93.52 Aligned_cols=114 Identities=22% Similarity=0.255 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~ 198 (285)
..+.....+...+....+++||||||++|+++++||+. +++|+++|++++..+.|+++++..+ +|+++.||+.+
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 34555555555555557889999999999999999985 6899999999999999999998764 89999999987
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIF 244 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~---~~l~~~g~~~ 244 (285)
.-.. +... ...++||+||.+-.-..-...+ ..++..|+.+
T Consensus 109 ~l~~-----l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvi 151 (205)
T PF01596_consen 109 VLPE-----LAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVI 151 (205)
T ss_dssp HHHH-----HHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEE
T ss_pred hHHH-----HHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEE
Confidence 5210 1100 1236899999986533223322 3444444444
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=3.3e-09 Score=101.99 Aligned_cols=89 Identities=10% Similarity=0.202 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHI 201 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~ 201 (285)
..........+.+.++.+|||+|||+|..+..+++. +++|+|+|+++.+++.++++++..+ +++++++|+.+.+
T Consensus 236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~- 314 (445)
T PRK14904 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS- 314 (445)
T ss_pred CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-
Confidence 334445556677778899999999999999988874 4699999999999999999998664 7899999998763
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
....||.|+.++|..
T Consensus 315 ------------~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 315 ------------PEEQPDAILLDAPCT 329 (445)
T ss_pred ------------cCCCCCEEEEcCCCC
Confidence 235799999999863
No 122
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=3.7e-09 Score=92.26 Aligned_cols=85 Identities=26% Similarity=0.287 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccc
Q 023240 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI 201 (285)
Q Consensus 128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~ 201 (285)
.....++..+.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++... +++.+..+|+..
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 334445555542 45779999999999999999988889999999999999999987654 368899988322
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
..+.||+|+++-.+
T Consensus 124 ------------~~~~fD~v~~~~~l 137 (230)
T PRK07580 124 ------------LLGRFDTVVCLDVL 137 (230)
T ss_pred ------------ccCCcCEEEEcchh
Confidence 23679999886554
No 123
>PRK06922 hypothetical protein; Provisional
Probab=99.00 E-value=2.5e-09 Score=105.36 Aligned_cols=82 Identities=11% Similarity=0.290 Sum_probs=65.9
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
+...++.+|||+|||+|..+..+++. +.+|+|+|+++.|++.|+++.... .+++++++|+.+++.. .
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------f 483 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------F 483 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------c
Confidence 34446789999999999999888875 679999999999999999886543 3788899999886511 1
Q ss_pred CCCCceEEEEcCCCC
Q 023240 214 SSSGFAKVVANIPFN 228 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~ 228 (285)
.+.+||+|+++++++
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 346799999997765
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=4.1e-09 Score=101.04 Aligned_cols=98 Identities=13% Similarity=0.247 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~ 197 (285)
+.........+...+.+.++.+|||+|||+|..+..+++. .++|+++|+++.+++.+++|++..+ +++++++|+.
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 3333444555666778888999999999999999999886 3589999999999999999998764 7999999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+++.... ...+.||.|+.|+|.+
T Consensus 314 ~~~~~~~--------~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 314 NLLELKP--------QWRGYFDRILLDAPCS 336 (434)
T ss_pred hcccccc--------cccccCCEEEEeCCCC
Confidence 7641000 0135799999999853
No 125
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.00 E-value=7.6e-10 Score=93.52 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.2
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHh
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~ 210 (285)
.+.++.. ++.+|||+|||.|.+...|.+. +.+.+|||++++.+..+.++ .+.++++|+.+.-. +
T Consensus 6 ~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~-~------- 70 (193)
T PF07021_consen 6 IIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLA-D------- 70 (193)
T ss_pred HHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHh-h-------
Confidence 3444444 6789999999999999999875 88999999999999998877 68899999977421 1
Q ss_pred hhcCCCCceEEEEcCCC---CCcHHHHHHhccCCC
Q 023240 211 RRKSSSGFAKVVANIPF---NISTDVIKQLLPMGD 242 (285)
Q Consensus 211 ~~~~~~~~D~Vv~n~P~---~~~~~i~~~l~~~g~ 242 (285)
.+.++||.||.+-.. ..+..+++.++.-|+
T Consensus 71 --f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 71 --FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred --CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 466889999996443 233455555554433
No 126
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.99 E-value=3.8e-09 Score=97.73 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240 126 NSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (285)
.+.+...+++.+... ++.+|||||||+|.++..+++. +.+|+++|.+++|++.|+++.. ..+++++.+|+.+.++
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~- 174 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPF- 174 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCC-
Confidence 345555566666543 5679999999999999988875 4699999999999999998864 3478999999998764
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..+.||+|+++..++
T Consensus 175 -----------~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 175 -----------PTDYADRYVSAGSIE 189 (340)
T ss_pred -----------CCCceeEEEEcChhh
Confidence 346799999986554
No 127
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.99 E-value=2.5e-09 Score=98.61 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHH--hhc-CCCeEEEEcccccccchhhhh
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FAS-IDQLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~--~~~-~~~v~~~~gD~~~~~~~~~~~ 206 (285)
..+...+...++.+|||||||+|+++..++..+. .|+|+|.++.++..++.. ... ..+++++.+|+.+++.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----- 186 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----- 186 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----
Confidence 4455566666789999999999999999998864 699999999998765432 221 2479999999988863
Q ss_pred hHHhhhcCCCCceEEEEc
Q 023240 207 SLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n 224 (285)
.+.||.|++.
T Consensus 187 --------~~~FD~V~s~ 196 (322)
T PRK15068 187 --------LKAFDTVFSM 196 (322)
T ss_pred --------cCCcCEEEEC
Confidence 4679999985
No 128
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.99 E-value=3.7e-09 Score=92.23 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (285)
Q Consensus 128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (285)
.+...+++.+.. ..+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. ++++++.+|+.+.++
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~- 94 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPL- 94 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCC-
Confidence 344444444432 345789999999999999999874 578999999999999998875 478999999988763
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
..+.||+|+++..++.
T Consensus 95 -----------~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 95 -----------EDSSFDLIVSNLALQW 110 (240)
T ss_pred -----------CCCceeEEEEhhhhhh
Confidence 3467999999866543
No 129
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.99 E-value=5.2e-09 Score=91.31 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=58.9
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeEEEEcccccccch
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVKCHIR 202 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~~~~gD~~~~~~~ 202 (285)
+...++.+|||+|||.|..++.||++|.+|+|||+++.+++.+..... ...+|++.++|+.+++..
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 444466799999999999999999999999999999999998743211 124789999999987531
Q ss_pred hhhhhHHhhhcCCCCceEEEE
Q 023240 203 SHMLSLFERRKSSSGFAKVVA 223 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~ 223 (285)
..+.||.|+-
T Consensus 113 -----------~~~~fd~v~D 122 (218)
T PRK13255 113 -----------DLADVDAVYD 122 (218)
T ss_pred -----------cCCCeeEEEe
Confidence 2246777773
No 130
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.98 E-value=3.6e-09 Score=94.14 Aligned_cols=88 Identities=28% Similarity=0.302 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
.++.+|||+|||+|.+++.+++.+. +|+|+|+|+.+++.|++|+..++ +. +...+. .....|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~------------~~~~~f 180 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLP------------QGDLKA 180 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEc------------cCCCCc
Confidence 4678999999999999998887765 59999999999999999987653 21 111111 111268
Q ss_pred eEEEEcCCCCCcHHHH---HHhccCCCce
Q 023240 219 AKVVANIPFNISTDVI---KQLLPMGDIF 244 (285)
Q Consensus 219 D~Vv~n~P~~~~~~i~---~~l~~~g~~~ 244 (285)
|+|++|........++ .+++.+|+.+
T Consensus 181 D~Vvani~~~~~~~l~~~~~~~LkpgG~l 209 (250)
T PRK00517 181 DVIVANILANPLLELAPDLARLLKPGGRL 209 (250)
T ss_pred CEEEEcCcHHHHHHHHHHHHHhcCCCcEE
Confidence 9999997654433333 2334444544
No 131
>PRK08317 hypothetical protein; Provisional
Probab=98.98 E-value=6.3e-09 Score=90.59 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchh
Q 023240 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~ 203 (285)
...+.+++.+.+.++.+|||+|||+|..+..++.. .++++|+|+++.+++.++++... .++++++.+|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-- 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF-- 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC--
Confidence 34456777788888899999999999999999876 36999999999999999988432 2489999999987763
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..+.||.|+++..+.
T Consensus 84 ----------~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 84 ----------PDGSFDAVRSDRVLQ 98 (241)
T ss_pred ----------CCCCceEEEEechhh
Confidence 346799999875543
No 132
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.98 E-value=7.4e-09 Score=94.99 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=69.8
Q ss_pred cCCcccCCHHHHHH-----HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHH---HhhcCCCe
Q 023240 119 LGQHYMLNSEINDQ-----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFASIDQL 189 (285)
Q Consensus 119 ~g~~~~~~~~~~~~-----l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~---~~~~~~~v 189 (285)
+.+ +.++.+++.. ++..+...++++|||||||+|+++..++..++ .|+|||.++.|+..++. .....+++
T Consensus 95 l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v 173 (314)
T TIGR00452 95 LSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA 173 (314)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence 445 6677777544 44455566789999999999999999988865 79999999999876532 22223578
Q ss_pred EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
.+..+|+.+++. ...||.|+++--
T Consensus 174 ~~~~~~ie~lp~-------------~~~FD~V~s~gv 197 (314)
T TIGR00452 174 ILEPLGIEQLHE-------------LYAFDTVFSMGV 197 (314)
T ss_pred EEEECCHHHCCC-------------CCCcCEEEEcch
Confidence 888888888752 247999998743
No 133
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.97 E-value=2.5e-08 Score=87.26 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C------CEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcc
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASID-----QLKVLQED 195 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~------~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD 195 (285)
+-+..+..+.+.++.++||++||||.++..+.+. . .+|+.+|+|++|++.++++.++.+ .+.++++|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 4556778888888999999999999999998875 2 689999999999999999985432 48999999
Q ss_pred cccccchh
Q 023240 196 FVKCHIRS 203 (285)
Q Consensus 196 ~~~~~~~~ 203 (285)
++++|+.+
T Consensus 168 AE~LpFdd 175 (296)
T KOG1540|consen 168 AEDLPFDD 175 (296)
T ss_pred cccCCCCC
Confidence 99999754
No 134
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.97 E-value=2.1e-09 Score=105.34 Aligned_cols=105 Identities=14% Similarity=0.270 Sum_probs=79.1
Q ss_pred ccCCcccCCHHHHHHHHHHhcCC-------CCCEEEEEcCcccHHHHHHHHhC----------CEEEEEeCCHHHHHHHH
Q 023240 118 SLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLVR 180 (285)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~t~~la~~~----------~~V~giD~~~~~v~~a~ 180 (285)
..|+ |+|++.+++.|++.+... ...+|||.|||+|.+...++... .+++|+|+++.++..|+
T Consensus 2 ~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 2 AYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred CCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 3577 999999999999987432 34589999999999998887531 47899999999999999
Q ss_pred HHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 181 ERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 181 ~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.++...+ .+.+.++|........ .. ...+.||+||+||||...
T Consensus 81 ~~l~~~~~~~~~i~~~d~l~~~~~~-----~~--~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 81 KLLGEFALLEINVINFNSLSYVLLN-----IE--SYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHhhcCCCCceeeecccccccccc-----cc--cccCcccEEEeCCCcccc
Confidence 9987654 5667777766432210 00 123579999999999754
No 135
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.97 E-value=1.3e-09 Score=90.39 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=58.6
Q ss_pred CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
..|+|+.||.|.-++.+|+...+|++||+|+..++.|+.|++-++ +|+++++|+.+....- .....+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence 369999999999999999998899999999999999999998775 8999999998863210 1111279
Q ss_pred EEEEcCCCCCcH
Q 023240 220 KVVANIPFNIST 231 (285)
Q Consensus 220 ~Vv~n~P~~~~~ 231 (285)
.|+.+||+..++
T Consensus 72 ~vFlSPPWGGp~ 83 (163)
T PF09445_consen 72 VVFLSPPWGGPS 83 (163)
T ss_dssp EEEE---BSSGG
T ss_pred EEEECCCCCCcc
Confidence 999999997554
No 136
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.96 E-value=1.9e-09 Score=91.42 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=61.6
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+....-.++||+|||.|.+|..||.+..+++++|+++.+++.|+++....++|+++++|+.+. .+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-------------~P~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-------------WPE 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-------------CCC
Confidence 4554455789999999999999999998899999999999999999998888999999999775 345
Q ss_pred CCceEEEEc-CCCCCc
Q 023240 216 SGFAKVVAN-IPFNIS 230 (285)
Q Consensus 216 ~~~D~Vv~n-~P~~~~ 230 (285)
+.||+||.. .-|+..
T Consensus 105 ~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLD 120 (201)
T ss_dssp S-EEEEEEES-GGGSS
T ss_pred CCeeEEEEehHhHcCC
Confidence 789987654 556554
No 137
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.7e-09 Score=92.71 Aligned_cols=105 Identities=23% Similarity=0.341 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~ 200 (285)
|.-...++..+.+.++.+|+|.|+|+|.++..||.. .++|+++|+.++..+.|++|++..+ ++++..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 444567888999999999999999999999999975 3699999999999999999998753 5999999998864
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCC--CCCcHHHHHHhccCCCce
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIF 244 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P--~~~~~~i~~~l~~~g~~~ 244 (285)
....+|.||.++| ++....+.+.|.+++...
T Consensus 160 -------------~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 160 -------------DEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred -------------cccccCEEEEcCCChHHHHHHHHHHhCCCcEEE
Confidence 3348999999976 555556556666654433
No 138
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.95 E-value=1.2e-08 Score=89.02 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccc
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~ 199 (285)
.......++..+...++.+|||+|||+|..+..++... .+++++|+++.+++.+++++... ++++++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34566677777777777899999999999999998874 79999999999999999998652 4789999999887
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
+. ..+.||+|+++.-
T Consensus 116 ~~------------~~~~~D~I~~~~~ 130 (239)
T PRK00216 116 PF------------PDNSFDAVTIAFG 130 (239)
T ss_pred CC------------CCCCccEEEEecc
Confidence 53 3467899987543
No 139
>PRK06202 hypothetical protein; Provisional
Probab=98.95 E-value=4.8e-09 Score=92.14 Aligned_cols=78 Identities=23% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.++.+|||+|||+|.++..+++. + .+|+|+|++++|++.|+++... .++++..+|+..++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~------------ 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA------------ 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc------------
Confidence 46679999999999999888752 3 4999999999999999988643 367777777766642
Q ss_pred CCCCceEEEEcCCCCCc
Q 023240 214 SSSGFAKVVANIPFNIS 230 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~~ 230 (285)
...+||+|++|..++..
T Consensus 126 ~~~~fD~V~~~~~lhh~ 142 (232)
T PRK06202 126 EGERFDVVTSNHFLHHL 142 (232)
T ss_pred cCCCccEEEECCeeecC
Confidence 34679999999776544
No 140
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.94 E-value=3.4e-09 Score=91.05 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=67.1
Q ss_pred CCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID-- 187 (285)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~~~-- 187 (285)
+..+.-.+...|+.+....++..-.-...++++|+|+.||.|++++.+|+ .+..|+++|+||.+++.+++|++.+.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 44333334444444443333322222345789999999999999999998 47799999999999999999998763
Q ss_pred -CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 188 -~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
++.++++|+.++. ....+|.|++|+|..
T Consensus 152 ~~i~~~~~D~~~~~-------------~~~~~drvim~lp~~ 180 (200)
T PF02475_consen 152 NRIEVINGDAREFL-------------PEGKFDRVIMNLPES 180 (200)
T ss_dssp TTEEEEES-GGG----------------TT-EEEEEE--TSS
T ss_pred CeEEEEcCCHHHhc-------------CccccCEEEECChHH
Confidence 7899999999874 357899999998854
No 141
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.94 E-value=1.3e-08 Score=83.76 Aligned_cols=102 Identities=23% Similarity=0.406 Sum_probs=86.0
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeE
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLK 190 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~ 190 (285)
...+.-|....++.-+++.|.....+..|.-|||+|.|||.+|.++.+++ ..+++||.|++.+..+.+.+ +.++
T Consensus 21 ~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ 97 (194)
T COG3963 21 DNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVN 97 (194)
T ss_pred cCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCcc
Confidence 33445677778888999999999999999999999999999999999885 48999999999999999886 5788
Q ss_pred EEEccccccc--chhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 191 VLQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 191 ~~~gD~~~~~--~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
+++||+.++. ..+ .....||.||+..|+
T Consensus 98 ii~gda~~l~~~l~e---------~~gq~~D~viS~lPl 127 (194)
T COG3963 98 IINGDAFDLRTTLGE---------HKGQFFDSVISGLPL 127 (194)
T ss_pred ccccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence 9999998875 221 456779999998775
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=1.3e-08 Score=89.30 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~ 204 (285)
.+..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+ +++++.+|+.+.+.
T Consensus 33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 109 (233)
T PRK05134 33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA--- 109 (233)
T ss_pred hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh---
Confidence 34445566666656678899999999999999999888899999999999999998876443 57778888776541
Q ss_pred hhhHHhhhcCCCCceEEEEcCCC
Q 023240 205 MLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
...+.||+|+++..+
T Consensus 110 --------~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 110 --------EHPGQFDVVTCMEML 124 (233)
T ss_pred --------hcCCCccEEEEhhHh
Confidence 134679999886443
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.91 E-value=1.5e-08 Score=96.96 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-Ce--EEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QL--KVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v--~~~~gD~~ 197 (285)
+..+......+...+.+.++.+|||+|||+|..+..+++. +++|+|+|+++.+++.+++|++..+ .+ .+..+|..
T Consensus 220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~ 299 (426)
T TIGR00563 220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR 299 (426)
T ss_pred EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 3444455667777888888999999999999999999986 3799999999999999999998765 33 34667765
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..+.. .....||.|+.++|.+
T Consensus 300 ~~~~~----------~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 300 GPSQW----------AENEQFDRILLDAPCS 320 (426)
T ss_pred ccccc----------ccccccCEEEEcCCCC
Confidence 54310 1346799999999865
No 144
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=5.6e-09 Score=89.49 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=68.0
Q ss_pred ccCCHHHHHHHHHHhcCCC--CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc-c
Q 023240 123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-C 199 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~-~ 199 (285)
..+..++..+.++.+.... +.-|||||||+|.++..+...|...+|+|+|+.|++.|.+.-- .-.++.+|+-+ +
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~Gl 106 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL---EGDLILCDMGEGL 106 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCC
Confidence 3455777888888887765 6689999999999999999999999999999999999996321 13577777654 3
Q ss_pred cchhhhhhHHhhhcCCCCceEEEE
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVA 223 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~ 223 (285)
| ..++.||.+|+
T Consensus 107 p------------frpGtFDg~IS 118 (270)
T KOG1541|consen 107 P------------FRPGTFDGVIS 118 (270)
T ss_pred C------------CCCCccceEEE
Confidence 4 35688998887
No 145
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=8.3e-09 Score=85.94 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=67.5
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhh
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
+....+..++|||||+|..+..+++. +....+.|+|+++++..++.++.++ ++..++.|....
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~------------- 105 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG------------- 105 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-------------
Confidence 33334788999999999999999886 3578999999999999998887665 788999998775
Q ss_pred cCCCCceEEEEcCCCCCcH
Q 023240 213 KSSSGFAKVVANIPFNIST 231 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P~~~~~ 231 (285)
...++.|+++.||||-..+
T Consensus 106 l~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 106 LRNESVDVLVFNPPYVPTS 124 (209)
T ss_pred hccCCccEEEECCCcCcCC
Confidence 2448899999999996543
No 146
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.90 E-value=2.2e-08 Score=86.53 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (285)
......++..+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++....++++++.+|+.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-- 102 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF-- 102 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--
Confidence 3445566666666678899999999999999998873 48999999999999999987633479999999988763
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
..+.||+|+++..+
T Consensus 103 ----------~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 103 ----------EDNSFDAVTIAFGL 116 (223)
T ss_pred ----------CCCcEEEEEEeeee
Confidence 34579999886443
No 147
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=2.2e-08 Score=84.57 Aligned_cols=98 Identities=24% Similarity=0.384 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccc
Q 023240 124 MLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~ 197 (285)
.+...+.+.+..++.. ..+.++||+.+|+|.+++..+.+|+ .++.||.|..++..+++|++.. ++++++..|+.
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 3445666777777765 4789999999999999999999965 8999999999999999998754 48899999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
.... .......||+|+.+|||+..
T Consensus 104 ~~L~---------~~~~~~~FDlVflDPPy~~~ 127 (187)
T COG0742 104 RALK---------QLGTREPFDLVFLDPPYAKG 127 (187)
T ss_pred HHHH---------hcCCCCcccEEEeCCCCccc
Confidence 4311 00223359999999999833
No 148
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=6.5e-09 Score=92.19 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccc
Q 023240 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~ 197 (285)
...+.....+...+...++++|||||+++|+++++||.. +++|+++|.+++..+.|+++++..+ +|+++.||+.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 445677777777777777889999999999999999975 5799999999999999999998764 8999999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCCCcH---HHHHHhccCCCcee
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFS 245 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~---~i~~~l~~~g~~~~ 245 (285)
+.-.. +...-...++||+||.+---.... +.+..++..|+++.
T Consensus 142 e~L~~-----l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 142 PVLDQ-----MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred HHHHH-----HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEE
Confidence 75211 000000136899999974422222 33345556666553
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=9.1e-09 Score=87.93 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=67.6
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc-ccchhhhhhHH
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF 209 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~-~~~~~~~~d~~ 209 (285)
.+.+.+. ++.+|||+|||+|.++..+++. +..++|+|+++++++.++.+ +++++.+|+.+ .+.
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~-------- 70 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA-------- 70 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence 3444443 5679999999999999998765 56899999999999998753 57889999875 221
Q ss_pred hhhcCCCCceEEEEcCCCCCc---HHHHHHhccCCC
Q 023240 210 ERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMGD 242 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P~~~~---~~i~~~l~~~g~ 242 (285)
...++||+|+++.+++.. ..+++.+...++
T Consensus 71 ---~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 71 ---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred ---cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 234679999999876544 344555554443
No 150
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.86 E-value=2.4e-08 Score=86.55 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++.+|||||||+|.++..+++. +++|+|||+++ + ...++++++++|+.+.+..+...+- ...+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~----~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLER----VGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHH----hCCC
Confidence 56789999999999999999886 25899999998 1 1225799999999886421111111 2357
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
.+|+|++|+
T Consensus 117 ~~D~V~S~~ 125 (209)
T PRK11188 117 KVQVVMSDM 125 (209)
T ss_pred CCCEEecCC
Confidence 799999986
No 151
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.3e-08 Score=94.55 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=80.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--------------------------------------
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-------------------------------------- 164 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-------------------------------------- 164 (285)
-...+.++..|+....+.++..++|.-||+|.+.+..|..+.
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 455678888999999998888999999999999988776542
Q ss_pred ---EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 165 ---TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 165 ---~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
.++|+|+|+.+++.|+.|....+ -|++..+|+.++.. +...+|+||+||||..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------~~~~~gvvI~NPPYGe 311 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------PLEEYGVVISNPPYGE 311 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------CCCcCCEEEeCCCcch
Confidence 37799999999999999998764 79999999999852 2267899999999974
No 152
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=2e-08 Score=91.04 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=61.7
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEEcccccccchhhhhhHHhh
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~-------~~~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
.+++||+||||+|.++..+++. + .+|++||+|+.+++.|++.+.. .++++++.+|+.+.-.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---------- 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---------- 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh----------
Confidence 5679999999999999999886 3 5899999999999999998752 3589999999987521
Q ss_pred hcCCCCceEEEEcC
Q 023240 212 RKSSSGFAKVVANI 225 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~ 225 (285)
...++||+||++.
T Consensus 146 -~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 -ETENSFDVIIVDS 158 (283)
T ss_pred -hCCCcccEEEECC
Confidence 2346899999984
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.85 E-value=2.1e-08 Score=94.50 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=81.7
Q ss_pred ccCCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEE
Q 023240 118 SLGQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVL 192 (285)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~ 192 (285)
+|+-+....+++...+++.+... ++.+|||++||+|..++.++.. + .+|+++|+++.+++.+++|++.++ ++++.
T Consensus 33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~ 112 (382)
T PRK04338 33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVF 112 (382)
T ss_pred eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Confidence 45556666677777777776533 3468999999999999999876 3 389999999999999999998664 67789
Q ss_pred EcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHHH
Q 023240 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236 (285)
Q Consensus 193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~~ 236 (285)
++|+.++. ...+.||+|+.||| ....+++..
T Consensus 113 ~~Da~~~l------------~~~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 113 NKDANALL------------HEERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred hhhHHHHH------------hhcCCCCEEEECCC-CCcHHHHHH
Confidence 99997652 11356999999987 665666554
No 154
>PLN03075 nicotianamine synthase; Provisional
Probab=98.83 E-value=3.6e-08 Score=89.31 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHH-HHHHHH-h--CCEEEEEeCCHHHHHHHHHHhhc-C---CCeEEEEccccccc
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSL-TNVLLN-A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCH 200 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~-t~~la~-~--~~~V~giD~~~~~v~~a~~~~~~-~---~~v~~~~gD~~~~~ 200 (285)
.--.++..+...++++|+|||||.|.+ ++.+++ . +.+++++|+|+++++.|++.+.. . ++++|..+|+.+..
T Consensus 111 lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 111 LEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 333444444444788999999997754 444443 2 56899999999999999999854 2 37999999998853
Q ss_pred chhhhhhHHhhhcCCCCceEEEEc
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
...+.||+|++.
T Consensus 191 ------------~~l~~FDlVF~~ 202 (296)
T PLN03075 191 ------------ESLKEYDVVFLA 202 (296)
T ss_pred ------------cccCCcCEEEEe
Confidence 234679999998
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.82 E-value=2.8e-08 Score=100.61 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=78.5
Q ss_pred ccCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh---------------------------------------
Q 023240 123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--------------------------------------- 162 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--------------------------------------- 162 (285)
-.+.+.++..|+....+ .++..++|.+||+|.+.+..|..
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34567888888888877 56789999999999998776542
Q ss_pred -----CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 163 -----~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
..+++|+|+++.+++.|+.|+..++ .+++..+|+.+++.. ...+.+|+||+||||...
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~----------~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP----------LPKGPTGLVISNPPYGER 316 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc----------cccCCCCEEEECCCCcCc
Confidence 1269999999999999999998764 589999999987532 123568999999999643
No 156
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=2.5e-08 Score=86.74 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccc
Q 023240 126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (285)
Q Consensus 126 ~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~ 199 (285)
++..+..+.+.+.. ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+ ++++..+|+.+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 33344555555542 347799999999999999998888899999999999999999887543 588999998876
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
+. .....||+|+++-.
T Consensus 106 ~~-----------~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 106 AE-----------KGAKSFDVVTCMEV 121 (224)
T ss_pred hc-----------CCCCCccEEEehhH
Confidence 53 12367999998644
No 157
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.78 E-value=2.8e-08 Score=86.54 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=58.4
Q ss_pred CEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++|||||||+|..+..+++. +.+|+|+|+++.+++.+++++... ++++++.+|+.+.+. .+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------------~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------------PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------CCC
Confidence 37999999999999999886 479999999999999999988653 378999999876542 247
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
||+|+++-
T Consensus 68 fD~I~~~~ 75 (224)
T smart00828 68 YDLVFGFE 75 (224)
T ss_pred CCEeehHH
Confidence 99999853
No 158
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.78 E-value=8.6e-10 Score=83.69 Aligned_cols=75 Identities=28% Similarity=0.374 Sum_probs=47.6
Q ss_pred EEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (285)
Q Consensus 146 LDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V 221 (285)
||||||+|.++..+++. ..+++++|+|+.|++.|++++.... +...+..+..+.... ....+||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence 79999999999999888 7899999999999999988887654 334444444333210 122589999
Q ss_pred EEcCCCCCc
Q 023240 222 VANIPFNIS 230 (285)
Q Consensus 222 v~n~P~~~~ 230 (285)
++.-.++..
T Consensus 71 ~~~~vl~~l 79 (99)
T PF08242_consen 71 VASNVLHHL 79 (99)
T ss_dssp EEE-TTS--
T ss_pred hhhhhHhhh
Confidence 998666554
No 159
>PRK04457 spermidine synthase; Provisional
Probab=98.78 E-value=4.3e-08 Score=87.92 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=65.9
Q ss_pred HHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240 129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (285)
Q Consensus 129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (285)
..+.|+..+. ..++.+|||||||+|.++..+++. +.+|+++|+++++++.|++++... ++++++.+|+.+.-.
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~- 131 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA- 131 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-
Confidence 3444444333 335679999999999999999876 579999999999999999997642 589999999877521
Q ss_pred hhhhhHHhhhcCCCCceEEEEcC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
.....||+|+.|.
T Consensus 132 ----------~~~~~yD~I~~D~ 144 (262)
T PRK04457 132 ----------VHRHSTDVILVDG 144 (262)
T ss_pred ----------hCCCCCCEEEEeC
Confidence 1235799999863
No 160
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.4e-08 Score=94.99 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=94.9
Q ss_pred CCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeE
Q 023240 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLK 190 (285)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~ 190 (285)
+.+..+|+.|....+-+...+-++++...+..++|+.||||.+++.+|+...+|+|||+++.+++.|+.|...++ |.+
T Consensus 355 iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~ 434 (534)
T KOG2187|consen 355 ISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNAT 434 (534)
T ss_pred ECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcccee
Confidence 456667888888888888899999999989999999999999999999998999999999999999999998876 999
Q ss_pred EEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH-HHHHhccC
Q 023240 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPM 240 (285)
Q Consensus 191 ~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~-i~~~l~~~ 240 (285)
+++|-++++-.. ++ ...-+..-.++|.+||...... ++++|...
T Consensus 435 Fi~gqaE~~~~s-----l~-~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 435 FIVGQAEDLFPS-----LL-TPCCDSETLVAIIDPPRKGLHMKVIKALRAY 479 (534)
T ss_pred eeecchhhccch-----hc-ccCCCCCceEEEECCCcccccHHHHHHHHhc
Confidence 999977665321 00 0011122248899999866554 44555543
No 161
>PTZ00146 fibrillarin; Provisional
Probab=98.77 E-value=6.5e-08 Score=87.37 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.6
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc-chhhhhhHHhhh
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFERR 212 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~-~~~~~~d~~~~~ 212 (285)
+.+.++.+|||+|||+|+.+..++.. ...|+++|+++++.+.+....+...||.++.+|+.... +.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~---------- 197 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR---------- 197 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh----------
Confidence 44668899999999999999999987 25899999999876555554443468999999986421 10
Q ss_pred cCCCCceEEEEcCCCCCcHHH----HHHhccCCCcee
Q 023240 213 KSSSGFAKVVANIPFNISTDV----IKQLLPMGDIFS 245 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P~~~~~~i----~~~l~~~g~~~~ 245 (285)
.....+|+|+++...-....+ +.+++.+++.+.
T Consensus 198 ~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 198 MLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred cccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEE
Confidence 122468999998753222212 244566666553
No 162
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=91.96 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=75.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhh
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d 207 (285)
++++... +|.+|+|..||.|++++.+|..+.. |+++|+||.+++.+++|++.|+ .+..++||+.++..
T Consensus 181 Rva~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------ 252 (341)
T COG2520 181 RVAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ 252 (341)
T ss_pred HHHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------
Confidence 3444433 5999999999999999999999764 9999999999999999999774 58999999999863
Q ss_pred HHhhhcCCCCceEEEEcCCCC---CcHHHHHHhcc
Q 023240 208 LFERRKSSSGFAKVVANIPFN---ISTDVIKQLLP 239 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~---~~~~i~~~l~~ 239 (285)
..+.+|.|++|.|.. .....++.+..
T Consensus 253 ------~~~~aDrIim~~p~~a~~fl~~A~~~~k~ 281 (341)
T COG2520 253 ------ELGVADRIIMGLPKSAHEFLPLALELLKD 281 (341)
T ss_pred ------ccccCCEEEeCCCCcchhhHHHHHHHhhc
Confidence 337799999998864 33444555555
No 163
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.73 E-value=4.8e-08 Score=88.74 Aligned_cols=92 Identities=13% Similarity=0.309 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (285)
|-++..+++.+.+.++..++|.+||.|..+..+++. .++|+|+|.|+++++.|++++...++++++++|+.++...
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~- 83 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV- 83 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence 556778888888888899999999999999999987 3799999999999999999876545899999999887421
Q ss_pred hhhhHHhhhcCCCCceEEEEcCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
+. .....+|.|+.++-
T Consensus 84 -----l~--~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 -----LA--EGLGKVDGILLDLG 99 (296)
T ss_pred -----HH--cCCCccCEEEECCC
Confidence 10 11126888888654
No 164
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=6e-08 Score=82.45 Aligned_cols=75 Identities=17% Similarity=0.379 Sum_probs=54.1
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 138 AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.+.++.+|||+|||+|.++..+++. ..+|+++|+++.+ ..++++++++|+.+.+..+..... ..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----VG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----hC
Confidence 4457889999999999999988876 3479999999865 124788999998775421111000 23
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+.+|+|+++.
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 45799999984
No 165
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.69 E-value=1.7e-07 Score=85.77 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (285)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~ 200 (285)
....+++.+...++.+|||||||+|.++..+++. +.+++++|. +.+++.++++++.. ++++++.+|+.+.+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 4556777777777889999999999999999987 468999997 78999999988754 37999999998754
No 166
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.69 E-value=1.4e-07 Score=77.09 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
..++.+|||||||+|.++..+++.+.+++|+|+++.+++. .++.....+....+ ...+.|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~f 79 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPP------------FPDGSF 79 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHH------------CHSSSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhh------------ccccch
Confidence 4567899999999999999998889999999999999998 13333333333332 345789
Q ss_pred eEEEEcCCCCCc
Q 023240 219 AKVVANIPFNIS 230 (285)
Q Consensus 219 D~Vv~n~P~~~~ 230 (285)
|+|+++--++..
T Consensus 80 D~i~~~~~l~~~ 91 (161)
T PF13489_consen 80 DLIICNDVLEHL 91 (161)
T ss_dssp EEEEEESSGGGS
T ss_pred hhHhhHHHHhhc
Confidence 999998554433
No 167
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.67 E-value=2.1e-07 Score=85.04 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=53.6
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC-C--CeEEEEcccccc
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-D--QLKVLQEDFVKC 199 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~-~--~v~~~~gD~~~~ 199 (285)
..+...+. ++.+|||+|||+|..+..+++. +.+|+++|+|++|++.|++++... + ++..+++|+.+.
T Consensus 55 ~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 55 DEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 33444443 5679999999999999999877 579999999999999999887642 3 467789999863
No 168
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.66 E-value=7.8e-08 Score=90.36 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=74.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~ 197 (285)
++.+....+..+.... .|++||++.|=||.++...|..|+ +|++||.|..+++.|++|++.|+ .+.++++|+.
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 3444444444444433 389999999999999999999987 99999999999999999999774 5799999998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
++--... ..+.+||+||.+||-
T Consensus 279 ~~l~~~~--------~~g~~fDlIilDPPs 300 (393)
T COG1092 279 KWLRKAE--------RRGEKFDLIILDPPS 300 (393)
T ss_pred HHHHHHH--------hcCCcccEEEECCcc
Confidence 7632110 345589999999993
No 169
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.65 E-value=1.1e-07 Score=85.35 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCcccH----HHHHHHHh-------CCEEEEEeCCHHHHHHHHHHhhc-----------------------
Q 023240 140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS----------------------- 185 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~----~t~~la~~-------~~~V~giD~~~~~v~~a~~~~~~----------------------- 185 (285)
.++.+|||+|||+|. +++.+++. +.+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45555543 35899999999999999985310
Q ss_pred ------CCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEc
Q 023240 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (285)
Q Consensus 186 ------~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n 224 (285)
..+|++.++|+.+.++ ..+.||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~------------~~~~fD~I~cr 210 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP------------PLGDFDLIFCR 210 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC------------ccCCCCEEEec
Confidence 0268889999988653 34679999994
No 170
>PRK03612 spermidine synthase; Provisional
Probab=98.65 E-value=1.2e-07 Score=92.86 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHh--h-------cCCCeEEEEcccccccchhhhhhH
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~d~ 208 (285)
.++++|||||||+|..+..+++.. .+|+++|+|+++++.++++. . ..++++++.+|+.+.-.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence 457899999999999999988873 69999999999999999842 1 12589999999987421
Q ss_pred HhhhcCCCCceEEEEcCCCC
Q 023240 209 FERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 209 ~~~~~~~~~~D~Vv~n~P~~ 228 (285)
...++||+|++|+|..
T Consensus 369 ----~~~~~fDvIi~D~~~~ 384 (521)
T PRK03612 369 ----KLAEKFDVIIVDLPDP 384 (521)
T ss_pred ----hCCCCCCEEEEeCCCC
Confidence 2346899999998754
No 171
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.65 E-value=1.4e-07 Score=69.78 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=60.8
Q ss_pred EEEEEcCcccHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
+|+|+|||.|..+..++. ...+++++|.++.++..+++..... .+++++.+|+.+... ...+.+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-----------EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----------ccCCceEE
Confidence 489999999999999987 4679999999999999998543322 478999999887642 13467999
Q ss_pred EEEcCCCCC
Q 023240 221 VVANIPFNI 229 (285)
Q Consensus 221 Vv~n~P~~~ 229 (285)
|+.+++++.
T Consensus 70 i~~~~~~~~ 78 (107)
T cd02440 70 IISDPPLHH 78 (107)
T ss_pred EEEccceee
Confidence 999999875
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.64 E-value=1.4e-07 Score=87.60 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHh--h-------cCCCeEEEEcccccccchhhhhh
Q 023240 139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~--~-------~~~~v~~~~gD~~~~~~~~~~~d 207 (285)
...+.+||+||||+|..+..+++.. .+|++||+|+++++.|++.. . ..++++++.+|+.++-.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~------ 221 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS------ 221 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH------
Confidence 3457899999999999988888763 69999999999999999621 1 13589999999987531
Q ss_pred HHhhhcCCCCceEEEEcCCC
Q 023240 208 LFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~ 227 (285)
...+.||+||.++|.
T Consensus 222 -----~~~~~YDVIIvDl~D 236 (374)
T PRK01581 222 -----SPSSLYDVIIIDFPD 236 (374)
T ss_pred -----hcCCCccEEEEcCCC
Confidence 234679999999764
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.64 E-value=1.2e-07 Score=82.70 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc--------------CCCeEE
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV 191 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~--------------~~~v~~ 191 (285)
++.+.+.+-. +...++.+||..|||.|.-...||+.|.+|+|+|+++.+++.+.+.... .++|++
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 3444444443 6666778999999999999999999999999999999999998443221 136899
Q ss_pred EEcccccccc
Q 023240 192 LQEDFVKCHI 201 (285)
Q Consensus 192 ~~gD~~~~~~ 201 (285)
.+||+.+++.
T Consensus 102 ~~gDfF~l~~ 111 (218)
T PF05724_consen 102 YCGDFFELPP 111 (218)
T ss_dssp EES-TTTGGG
T ss_pred EEcccccCCh
Confidence 9999999864
No 174
>PLN02366 spermidine synthase
Probab=98.63 E-value=3.7e-07 Score=83.64 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
.++++||+||||.|.++..+++. ..+|+.+|+++.+++.|++.+.. .++++++.+|+.+.-- .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~---------~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK---------N 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------h
Confidence 45789999999999999999887 35899999999999999998753 2589999999876421 0
Q ss_pred hcCCCCceEEEEcCC
Q 023240 212 RKSSSGFAKVVANIP 226 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~P 226 (285)
...+.||+||.+.+
T Consensus 161 -~~~~~yDvIi~D~~ 174 (308)
T PLN02366 161 -APEGTYDAIIVDSS 174 (308)
T ss_pred -ccCCCCCEEEEcCC
Confidence 12467999999754
No 175
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=2.7e-07 Score=83.08 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhh
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
..+++|||||||+|.++..+++. ..+++++|+++++++.|++++.. .++++++.+|+.+.-.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---------- 140 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---------- 140 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence 34669999999999999888776 35899999999999999998643 2478888888866421
Q ss_pred hcCCCCceEEEEcCCC
Q 023240 212 RKSSSGFAKVVANIPF 227 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~P~ 227 (285)
.....||+||.+++.
T Consensus 141 -~~~~~yDvIi~D~~~ 155 (270)
T TIGR00417 141 -DTENTFDVIIVDSTD 155 (270)
T ss_pred -hCCCCccEEEEeCCC
Confidence 124679999998763
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.61 E-value=8.1e-07 Score=77.76 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh--------------cCCCeE
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK 190 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~--------------~~~~v~ 190 (285)
.++.+.+.+- .+...++.+||..|||.|.-+.+||+.|.+|+|+|+|+.+++.+.+... ...+++
T Consensus 28 pnp~L~~~~~-~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHFS-KLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHHH-hcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 3444445543 3444456899999999999999999999999999999999999866321 123799
Q ss_pred EEEccccccc
Q 023240 191 VLQEDFVKCH 200 (285)
Q Consensus 191 ~~~gD~~~~~ 200 (285)
++++|+.+++
T Consensus 107 ~~~gD~f~l~ 116 (226)
T PRK13256 107 IYVADIFNLP 116 (226)
T ss_pred EEEccCcCCC
Confidence 9999999986
No 177
>PRK10742 putative methyltransferase; Provisional
Probab=98.57 E-value=3.3e-07 Score=80.75 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCC--EEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-----------CCeEEEEccccc
Q 023240 132 QLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFVK 198 (285)
Q Consensus 132 ~l~~~l~~~~~~--~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-----------~~v~~~~gD~~~ 198 (285)
.+++.+.++++. +|||.-+|+|..+..++..|++|+++|.++......+.++... .+++++++|+.+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 466667777766 9999999999999999999999999999999999998887752 258888888877
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
+-- .....||+|+.+|||...
T Consensus 157 ~L~-----------~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 157 ALT-----------DITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHh-----------hCCCCCcEEEECCCCCCC
Confidence 531 123479999999999654
No 178
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.54 E-value=5.3e-07 Score=81.35 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHH--HHhhcCC-CeEEEEcccccccchhhhh
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFASID-QLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~--~~~~~~~-~v~~~~gD~~~~~~~~~~~ 206 (285)
+++...+..-.|++|||||||.||++..|+..|+ .|+|||.+...+.+.+ +++.... .+..+..-+++++
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------ 178 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------ 178 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence 4566666555799999999999999999999976 6999999988776633 3333222 2333323344443
Q ss_pred hHHhhhcCCCCceEEEE-cCCCCCcHHHH------HHhccCCCceeeeE
Q 023240 207 SLFERRKSSSGFAKVVA-NIPFNISTDVI------KQLLPMGDIFSEVV 248 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~-n~P~~~~~~i~------~~l~~~g~~~~~~~ 248 (285)
..+.||.|++ ..-||..+|+. ..|.++|.++-+..
T Consensus 179 -------~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 -------NLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -------ccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 2577999987 46677665542 34455666664443
No 179
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.53 E-value=5.3e-07 Score=81.58 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHI 201 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~ 201 (285)
++...++.+.. .+++|||+.|=||.++...+..|+ +|++||.|..+++.+++|++.|+ +++++.+|+.+.--
T Consensus 112 R~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 112 RENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred HhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence 44444444433 578999999999999999887775 79999999999999999998763 78999999877421
Q ss_pred hhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 202 RSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 202 ~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
.....++||+||.+||-
T Consensus 189 ---------~~~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 189 ---------RLKKGGRFDLIILDPPS 205 (286)
T ss_dssp ---------HHHHTT-EEEEEE--SS
T ss_pred ---------HHhcCCCCCEEEECCCC
Confidence 11235689999999993
No 180
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.51 E-value=2.8e-07 Score=83.53 Aligned_cols=92 Identities=26% Similarity=0.414 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
-.++.|||+|||+|.++...++.|+ +|++||-+ +|.+.|++.++.+ ++|.++.|.++++.+ +
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------------P 241 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------------P 241 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------------c
Confidence 3678999999999999999998864 89999976 7899999988765 489999999999854 4
Q ss_pred CCceEEEEcCCCCC--cHHHH-------HHhccCCCcee
Q 023240 216 SGFAKVVANIPFNI--STDVI-------KQLLPMGDIFS 245 (285)
Q Consensus 216 ~~~D~Vv~n~P~~~--~~~i~-------~~l~~~g~~~~ 245 (285)
.+.|++|+.|--.. ..+.+ ++|.+.|.+|.
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 67899999876321 23333 35666666663
No 181
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=80.51 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=81.2
Q ss_pred CCcccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcc
Q 023240 120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (285)
Q Consensus 120 g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD 195 (285)
++...+++.+...+....... ....|+|..||.|.-++..|..+..|++||+|+.-++.|+.|++-+| +|++++||
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 333556666666655554322 56789999999999999999999999999999999999999998764 89999999
Q ss_pred cccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHH
Q 023240 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (285)
Q Consensus 196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~ 232 (285)
++++--. +. .....+|+|+..||+..+.-
T Consensus 152 ~ld~~~~------lq--~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 152 FLDLASK------LK--ADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred HHHHHHH------Hh--hhhheeeeeecCCCCCCcch
Confidence 9886311 10 23455899999999987653
No 182
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.50 E-value=5.4e-07 Score=82.40 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
-+++.|||+|||||.+++..|+.|+ +|+|||.+.-+ +.|.+.+..++ -|+++.|.+.++.+ +.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------------P~ 125 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------------PV 125 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------------Cc
Confidence 3689999999999999999999975 89999977554 88888887764 58999999999853 34
Q ss_pred CCceEEEEc
Q 023240 216 SGFAKVVAN 224 (285)
Q Consensus 216 ~~~D~Vv~n 224 (285)
.+.|+||+.
T Consensus 126 eKVDiIvSE 134 (346)
T KOG1499|consen 126 EKVDIIVSE 134 (346)
T ss_pred cceeEEeeh
Confidence 789999995
No 183
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.49 E-value=2.5e-07 Score=81.08 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=63.9
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
...+||||||.|.+...+|+. ...++|||+....+..|.+.+.+.+ |+.++++|+.++-. .+ .+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~------~~---~~~~s 119 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD------YL---IPDGS 119 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH------hc---CCCCC
Confidence 368999999999999999998 5689999999999999999887653 99999999988632 11 34558
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.|+.|-|
T Consensus 120 l~~I~i~FP 128 (227)
T COG0220 120 LDKIYINFP 128 (227)
T ss_pred eeEEEEECC
Confidence 999999866
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.49 E-value=1.5e-07 Score=81.45 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=75.9
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhh-cC---CCeEEEEcccccccchhhhhhH
Q 023240 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA-SI---DQLKVLQEDFVKCHIRSHMLSL 208 (285)
Q Consensus 134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~-~~---~~v~~~~gD~~~~~~~~~~~d~ 208 (285)
+....++.+.+|||.+.|-||.++..+++|+ +|+++|.|+..++.|+-|-= .. .+++++.||+.++--
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~------- 199 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK------- 199 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh-------
Confidence 3445566799999999999999999999988 99999999999999987631 11 278999999987521
Q ss_pred HhhhcCCCCceEEEEcCCC-CCcH---------HHHHHhccCCCce
Q 023240 209 FERRKSSSGFAKVVANIPF-NIST---------DVIKQLLPMGDIF 244 (285)
Q Consensus 209 ~~~~~~~~~~D~Vv~n~P~-~~~~---------~i~~~l~~~g~~~ 244 (285)
+ .+..+||+||.+||. +... ++.+-|.++|++|
T Consensus 200 --~-~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 200 --D-FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred --c-CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 1 355779999999994 3332 3334445566665
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.44 E-value=8.4e-07 Score=76.12 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
...+||||||.|.+...+|.. +..++|||++...+..+..++... +|+.++++|+..+-. .+ ..+++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~-----~~----~~~~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR-----RL----FPPGS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH-----HH----STTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh-----hc----ccCCc
Confidence 448999999999999999987 679999999999999998887754 599999999987421 11 34578
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.|..|-|
T Consensus 89 v~~i~i~FP 97 (195)
T PF02390_consen 89 VDRIYINFP 97 (195)
T ss_dssp EEEEEEES-
T ss_pred hheEEEeCC
Confidence 999999865
No 186
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.43 E-value=1.3e-06 Score=81.98 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=67.5
Q ss_pred CEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
-+|||+.||+|..++.++.. | .+|+++|+|+++++.+++|++.++ +++++++|+..+.. .....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-----------~~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-----------YRNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-----------HhCCC
Confidence 58999999999999999986 4 489999999999999999998764 68999999987632 12356
Q ss_pred ceEEEEcCCCCCcHHHHHH
Q 023240 218 FAKVVANIPFNISTDVIKQ 236 (285)
Q Consensus 218 ~D~Vv~n~P~~~~~~i~~~ 236 (285)
||+|+.+| |..+.+++..
T Consensus 115 fDvIdlDP-fGs~~~fld~ 132 (374)
T TIGR00308 115 FHVIDIDP-FGTPAPFVDS 132 (374)
T ss_pred CCEEEeCC-CCCcHHHHHH
Confidence 99999999 6666666653
No 187
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=8.2e-07 Score=75.64 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=59.0
Q ss_pred CEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC--CCeE-EEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~--~~v~-~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
..|||+|||||..-...-.. +..|+++|.++.|-+.|.+.+... .++. ++++++.+++. ...+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~ 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY 146 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence 46899999999977665533 789999999999999999888754 3776 99999999873 345789
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|.||...-
T Consensus 147 DtVV~Tlv 154 (252)
T KOG4300|consen 147 DTVVCTLV 154 (252)
T ss_pred eeEEEEEE
Confidence 99998643
No 188
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.40 E-value=2e-06 Score=75.52 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=38.4
Q ss_pred HHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHH
Q 023240 131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGL 178 (285)
Q Consensus 131 ~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~ 178 (285)
..+++...+ .++.+|||+|||+|.++..+++.| .+|+|+|+++.++..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 344444443 267799999999999999999995 589999999987765
No 189
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.8e-06 Score=74.32 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchh
Q 023240 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~ 203 (285)
...++..+.+.+|.+|+|-|+|+|.++.++++. .++++..|+.+...+.|.+.++.. +++++.+-|+...-+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~- 172 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL- 172 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc-
Confidence 567888999999999999999999999999987 369999999999999999999876 3999999999876653
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCC--CCcHHHHHHhccCCCcee
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQLLPMGDIFS 245 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~--~~~~~i~~~l~~~g~~~~ 245 (285)
.....+|.|+.++|- ....-..+.+...|..++
T Consensus 173 ---------~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 173 ---------IKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ---------ccccccceEEEcCCChhhhhhhhHHHhhhcCceEE
Confidence 235678999999763 222233344444554443
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.36 E-value=2.6e-06 Score=81.88 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=53.5
Q ss_pred CCEEEEEcCcccHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~------~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
+..|+|+|||+|-+....++++ .+|+|||.|+.++..+++.++.+ ++|+++++|+.++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----------
Confidence 5689999999999987776653 59999999999988877664443 489999999999863
Q ss_pred cCCCCceEEEEcCC
Q 023240 213 KSSSGFAKVVANIP 226 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P 226 (285)
+.++|+||+.+-
T Consensus 256 --pekvDIIVSElL 267 (448)
T PF05185_consen 256 --PEKVDIIVSELL 267 (448)
T ss_dssp --SS-EEEEEE---
T ss_pred --CCceeEEEEecc
Confidence 358999999643
No 191
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.35 E-value=3.2e-06 Score=82.28 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=82.6
Q ss_pred ccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID-- 187 (285)
Q Consensus 116 ~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~-- 187 (285)
.+..|+ |++++++.+.|++.+.+.+..+|+|..||+|.+....++. . ..++|.|+++.....|+.|+--++
T Consensus 162 ~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 162 GKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 344577 9999999999999999977789999999999987666543 1 569999999999999999976443
Q ss_pred -CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 188 -~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
++.+.++|...-|..... .....||.|++||||+
T Consensus 241 ~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~ 275 (489)
T COG0286 241 GDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS 275 (489)
T ss_pred ccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence 457777887766543210 1446799999999997
No 192
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.26 E-value=6.2e-06 Score=69.38 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEcccccccchhhhhhHHhh
Q 023240 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
...+.+|||+|||+|..++.++.. +.+|+..|.++ .++.++.|++.++ ++.+...|..+.. ..+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~----~~~~--- 114 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL----DSDL--- 114 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H----HHHH---
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc----cccc---
Confidence 346789999999999999999998 67999999998 9999999988652 5666666654311 0111
Q ss_pred hcCCCCceEEEEc-CCCCCc--H---HHHHHhccCCCc
Q 023240 212 RKSSSGFAKVVAN-IPFNIS--T---DVIKQLLPMGDI 243 (285)
Q Consensus 212 ~~~~~~~D~Vv~n-~P~~~~--~---~i~~~l~~~g~~ 243 (285)
.....||+|++. .-|... . ..+.+++..++.
T Consensus 115 -~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 115 -LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp -HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred -cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 244679999874 444322 2 334566665555
No 193
>PLN02823 spermine synthase
Probab=98.26 E-value=6.2e-06 Score=76.43 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=61.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.+++||.||+|.|.++..+++. ..+|+.||+|+++++.|++.+.. .++++++.+|+.+.--
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----------- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----------- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence 4679999999999999988875 35899999999999999998753 2589999999987521
Q ss_pred cCCCCceEEEEcC
Q 023240 213 KSSSGFAKVVANI 225 (285)
Q Consensus 213 ~~~~~~D~Vv~n~ 225 (285)
...++||+||.+.
T Consensus 172 ~~~~~yDvIi~D~ 184 (336)
T PLN02823 172 KRDEKFDVIIGDL 184 (336)
T ss_pred hCCCCccEEEecC
Confidence 2346799999984
No 194
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.25 E-value=8e-06 Score=74.12 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCC-----CCEEEEEcCcccHHHHHHH-Hh-CCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEccccc
Q 023240 130 NDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLL-NA-GATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK 198 (285)
Q Consensus 130 ~~~l~~~l~~~~-----~~~VLDiGcG~G~~t~~la-~~-~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~ 198 (285)
+..+.+.+.... .-++||||||.-.+--.|+ +. +.+++|.|+++..++.|+++++.++ +|+++...-..
T Consensus 86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~ 165 (299)
T PF05971_consen 86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD 165 (299)
T ss_dssp HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence 444555554322 3479999999887543333 33 8899999999999999999999872 68877653221
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~ 235 (285)
. .++.+. .....||..++||||+...+...
T Consensus 166 ~-----i~~~i~--~~~e~~dftmCNPPFy~s~~e~~ 195 (299)
T PF05971_consen 166 N-----IFDGII--QPNERFDFTMCNPPFYSSQEEAE 195 (299)
T ss_dssp S-----STTTST--T--S-EEEEEE-----SS-----
T ss_pred c-----cchhhh--cccceeeEEecCCccccChhhhc
Confidence 1 111111 23457999999999988875443
No 195
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.22 E-value=2.8e-06 Score=73.41 Aligned_cols=94 Identities=17% Similarity=0.320 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhc-------C----CCeEE
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-------I----DQLKV 191 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~-------~----~~v~~ 191 (285)
+.+.....+++.+++.+++..+|||||.|......|.. ++ +++|||+.+...+.|+...+. . +++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 34667788889999999999999999999998877754 55 599999999998887754331 1 36888
Q ss_pred EEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCC
Q 023240 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF 227 (285)
Q Consensus 192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~ 227 (285)
.+||+.+.+.... ++ ...|+|+.| --|
T Consensus 106 ~~gdfl~~~~~~~---~~------s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 106 IHGDFLDPDFVKD---IW------SDADVVFVNNTCF 133 (205)
T ss_dssp ECS-TTTHHHHHH---HG------HC-SEEEE--TTT
T ss_pred eccCccccHhHhh---hh------cCCCEEEEecccc
Confidence 9999987653221 11 335888887 444
No 196
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.21 E-value=2.3e-06 Score=77.93 Aligned_cols=114 Identities=26% Similarity=0.372 Sum_probs=91.6
Q ss_pred HHhCCCCCccccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHH-------HHH
Q 023240 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG-------LVR 180 (285)
Q Consensus 108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~-------~a~ 180 (285)
+..+.+..|...|. ...++++.-.+.......+|+.|+|.--|||.+....|.-|+.|+|-|||-.++. ..+
T Consensus 176 i~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~ 254 (421)
T KOG2671|consen 176 IEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK 254 (421)
T ss_pred hhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence 44445666666665 7888888888888888999999999999999999998988999999999988887 345
Q ss_pred HHhhcCC----CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH
Q 023240 181 ERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (285)
Q Consensus 181 ~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i 233 (285)
.|+++++ -+.++.+|..+-++ .....||.||++|||.+....
T Consensus 255 aNFkQYg~~~~fldvl~~D~sn~~~-----------rsn~~fDaIvcDPPYGVRe~~ 300 (421)
T KOG2671|consen 255 ANFKQYGSSSQFLDVLTADFSNPPL-----------RSNLKFDAIVCDPPYGVREGA 300 (421)
T ss_pred HhHHHhCCcchhhheeeecccCcch-----------hhcceeeEEEeCCCcchhhhh
Confidence 6666654 46788899988775 334679999999999877643
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.21 E-value=7.7e-06 Score=79.02 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcc
Q 023240 123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED 195 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD 195 (285)
|+.+....-.....+ .+.++.+|||++||.|.=|..+|.. .+.|+++|+++..++.+++|+++.+ |+.+.+.|
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D 172 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD 172 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 444444444444555 6778999999999999999999886 3689999999999999999999775 78899999
Q ss_pred cccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 196 ~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
+..+.- .....||.|+.++|
T Consensus 173 ~~~~~~-----------~~~~~fD~ILvDaP 192 (470)
T PRK11933 173 GRVFGA-----------ALPETFDAILLDAP 192 (470)
T ss_pred hhhhhh-----------hchhhcCeEEEcCC
Confidence 876531 12356999999988
No 198
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.21 E-value=9.9e-07 Score=76.30 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhh
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~ 204 (285)
.-|..++.|+..+...+-.++||+|||||-.+..+.....+++|+|+|+.|++.|.++-- + =++.++|+..+.
T Consensus 109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-Y--D~L~~Aea~~Fl---- 181 (287)
T COG4976 109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-Y--DTLYVAEAVLFL---- 181 (287)
T ss_pred ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-h--HHHHHHHHHHHh----
Confidence 346777888888887777899999999999999998888899999999999999987621 1 123444444321
Q ss_pred hhhHHhhhcCCCCceEEEEc--CCCCCc-HHHH---HHhccCCCceeeeE
Q 023240 205 MLSLFERRKSSSGFAKVVAN--IPFNIS-TDVI---KQLLPMGDIFSEVV 248 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~n--~P~~~~-~~i~---~~l~~~g~~~~~~~ 248 (285)
+. .....||+|++. +||-.. .+++ ..++.+|++|...+
T Consensus 182 -----~~-~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 182 -----ED-LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred -----hh-ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 11 356778999884 565322 2322 35566777764433
No 199
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.21 E-value=1.4e-05 Score=72.94 Aligned_cols=97 Identities=11% Similarity=0.357 Sum_probs=77.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC 199 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~ 199 (285)
|...|-+++.+++.+.+.++..++|.-+|.|..+..+++. .++|+|+|.|+.+++.|+++++.. ++++++++++.++
T Consensus 2 ~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l 81 (305)
T TIGR00006 2 FFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF 81 (305)
T ss_pred CCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 4455777888999999888899999999999999999876 479999999999999999988765 4899999999886
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
.- .++. .....+|.|+.|+-
T Consensus 82 ~~------~l~~-~~~~~vDgIl~DLG 101 (305)
T TIGR00006 82 FE------HLDE-LLVTKIDGILVDLG 101 (305)
T ss_pred HH------HHHh-cCCCcccEEEEecc
Confidence 42 1111 12345788887643
No 200
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.20 E-value=2.5e-06 Score=71.66 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=54.0
Q ss_pred CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (285)
.+.+.|+|+|+|.++...|....+|++||.++...+.|++|+.-. .|+++++||+.+..+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 468999999999999988888889999999999999999997544 499999999999876
No 201
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.10 E-value=6.5e-06 Score=71.77 Aligned_cols=89 Identities=11% Similarity=0.194 Sum_probs=60.0
Q ss_pred EEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
.++|+|||+|..++.+|..-.+|+|+|+|+.|++.|++...... ..++...+..++. ..+.+.|+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------------g~e~SVDl 103 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------------GGEESVDL 103 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------------CCCcceee
Confidence 89999999998788888877799999999999999998754211 2233333333332 23577899
Q ss_pred EEEcCCCCCcH------HHHHHhccCCCce
Q 023240 221 VVANIPFNIST------DVIKQLLPMGDIF 244 (285)
Q Consensus 221 Vv~n~P~~~~~------~i~~~l~~~g~~~ 244 (285)
|++.-.+|+.. .+-+-|.+.|+++
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCCCCEE
Confidence 98876665542 2223444566565
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=2.9e-05 Score=67.35 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=84.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~ 196 (285)
....++....+...++...++++||||.=||++++.+|.. +++|+++|+++...+.+....+..+ +|++++|++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 4566777777777777778999999999999999999886 7899999999999999988777654 899999998
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCC---CCCcHHHHHHhccCCCce
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP---FNISTDVIKQLLPMGDIF 244 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P---~~~~~~i~~~l~~~g~~~ 244 (285)
.+.- ..++.. .+.+.||.+|.+-- |..--+-.-+|+..|+.+
T Consensus 135 ~esL-----d~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi 179 (237)
T KOG1663|consen 135 LESL-----DELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVI 179 (237)
T ss_pred hhhH-----HHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEE
Confidence 7742 122222 35678999999632 321112223455555555
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.07 E-value=2.6e-05 Score=76.27 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+..+||||||.|.++..+|.. ...++|||++...+..+.+..... .|+.++++|+..+.. . ....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPNN 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCcc
Confidence 4678999999999999999987 578999999999999888876654 489999888754321 1 3456
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
++|.|+.|-|
T Consensus 417 sv~~i~i~FP 426 (506)
T PRK01544 417 SLDGIYILFP 426 (506)
T ss_pred cccEEEEECC
Confidence 7899999866
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.03 E-value=3.9e-05 Score=70.65 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
.++.++|||||++|..|..++++|.+|+|||..+ + ...+...++|+.+.+|...... ....+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l----~~~L~~~~~V~h~~~d~fr~~p------------~~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M----AQSLMDTGQVEHLRADGFKFRP------------PRKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c----CHhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence 4788999999999999999999999999999443 2 2233445799999999887642 246789
Q ss_pred EEEEcC---CCCCcHHHHHHhccCCCceeeeEeee
Q 023240 220 KVVANI---PFNISTDVIKQLLPMGDIFSEVVLLL 251 (285)
Q Consensus 220 ~Vv~n~---P~~~~~~i~~~l~~~g~~~~~~~~~~ 251 (285)
.++++. |.....-+.+|+.. | .-..+.+.+
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~-g-~cr~aIfnL 305 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVN-G-WCREAIFNL 305 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhc-C-cccEEEEEE
Confidence 999984 43333333345533 2 334444443
No 205
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.01 E-value=3.8e-05 Score=67.98 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=81.4
Q ss_pred ccCCcccCCHHHHHHHHHHhc-----CCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Q 023240 118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (285)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~-----~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~ 192 (285)
..|..|..+.+-...++..-. -....++||||+|.|..|..|+..-.+|++.|.|+.|...++++ +.+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence 357778888877777777552 12356899999999999999998878999999999998888765 45554
Q ss_pred EcccccccchhhhhhHHhhhcCCCCceEEEE-c------CCCCCcHHHHHHhccCCCceeeeEeee
Q 023240 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVA-N------IPFNISTDVIKQLLPMGDIFSEVVLLL 251 (285)
Q Consensus 193 ~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~-n------~P~~~~~~i~~~l~~~g~~~~~~~~~~ 251 (285)
..| ++. ..+.+||+|.+ | -|.....++-..|.+.|..+-.++.-+
T Consensus 141 ~~~--~w~------------~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~ 192 (265)
T PF05219_consen 141 DID--DWQ------------QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF 192 (265)
T ss_pred ehh--hhh------------ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 332 232 23457899876 3 455566677677777666665554433
No 206
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.99 E-value=4e-05 Score=62.15 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHH-----h-CCEEEEEeCCHHHHHHHHHHhhcCC-----CeEEEEccccc
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVK 198 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~-----~-~~~V~giD~~~~~v~~a~~~~~~~~-----~v~~~~gD~~~ 198 (285)
.+...|+|+|||-|+++..++. . +.+|++||.++..++.+..+.+... ++++..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 4677999999999999999998 4 6799999999999998888766432 45555555443
No 207
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.93 E-value=2.6e-05 Score=62.75 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEccccc
Q 023240 144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~ 198 (285)
+++|+|||.|.++..++..+ .+|+++|.++.+++.++++++.+ +++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 47999999999999999998865 368888776654
No 208
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00012 Score=68.42 Aligned_cols=96 Identities=19% Similarity=0.291 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~ 196 (285)
+..+..........+.+.+|.+|||+.++.|.=|.++|+. +..|+++|+++..+...++|++..+ |+.+++.|+
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 3444444455556788889999999999999999888886 3467999999999999999999876 788999998
Q ss_pred ccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 197 ~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
...+-.. .....||.|+.++|=
T Consensus 218 ~~~~~~~---------~~~~~fD~iLlDaPC 239 (355)
T COG0144 218 RRLAELL---------PGGEKFDRILLDAPC 239 (355)
T ss_pred ccccccc---------cccCcCcEEEECCCC
Confidence 7654210 122359999999883
No 209
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.70 E-value=0.00022 Score=64.71 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=75.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~ 197 (285)
+..+..........+.+.++..|||+++|.|.=|..+++. .+.|++.|+++..+...+.++.+.+ ++.+...|+.
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~ 146 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR 146 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence 3333444445556678888999999999999999999886 3699999999999999999998775 8888888888
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..... .....||.|+.++|=+
T Consensus 147 ~~~~~----------~~~~~fd~VlvDaPCS 167 (283)
T PF01189_consen 147 KLDPK----------KPESKFDRVLVDAPCS 167 (283)
T ss_dssp HHHHH----------HHTTTEEEEEEECSCC
T ss_pred ccccc----------ccccccchhhcCCCcc
Confidence 76321 1234699999998843
No 210
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00011 Score=64.30 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=68.7
Q ss_pred ccCCHHHHHHHHHHhc-CC--CCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEc
Q 023240 123 YMLNSEINDQLAAAAA-VQ--EGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID-QLKVLQE 194 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~-~~--~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~g 194 (285)
|..++.++..=...+. .. .+.+|||||||.|.....+.+. +.+|++.|.++.+++..+++....+ ++...+.
T Consensus 50 FfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~ 129 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVW 129 (264)
T ss_pred ccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccce
Confidence 4555555444333332 22 2337999999999999988875 2589999999999999998876443 4555555
Q ss_pred ccccccchhhhhhHHhhhcCCCCceEEEE-----cCCCCCcHH---HHHHhccCCCce
Q 023240 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVA-----NIPFNISTD---VIKQLLPMGDIF 244 (285)
Q Consensus 195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~-----n~P~~~~~~---i~~~l~~~g~~~ 244 (285)
|+..-.... ....+.+|++++ ..+-..... .+.+++.+|+.+
T Consensus 130 Dlt~~~~~~--------~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l 179 (264)
T KOG2361|consen 130 DLTSPSLKE--------PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL 179 (264)
T ss_pred eccchhccC--------CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence 554322111 134566776654 333222222 334555566654
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00013 Score=61.94 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH 204 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~ 204 (285)
..+.+.+...-+.-.+++|||+|+|+|-.++..+..|+ .|++.|+++.....++.|.+.|+ ++.+...|..- +
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~---- 139 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S---- 139 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----
Confidence 45566666666666799999999999999999998875 79999999999999999988887 78888888766 2
Q ss_pred hhhHHhhhcCCCCceEEEE-cCCCCCc
Q 023240 205 MLSLFERRKSSSGFAKVVA-NIPFNIS 230 (285)
Q Consensus 205 ~~d~~~~~~~~~~~D~Vv~-n~P~~~~ 230 (285)
.+.+|+++. +.-|+..
T Consensus 140 ----------~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 140 ----------PPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ----------CcceeEEEeeceecCch
Confidence 256788765 4555433
No 212
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.62 E-value=0.00028 Score=64.48 Aligned_cols=95 Identities=13% Similarity=0.288 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchh
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~ 203 (285)
|-++..+++.+.+.++..++|.--|.|..+..+++. +++|+|+|.|+.+++.|++++... +++.++++++.++.-
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~-- 83 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE-- 83 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence 556778888888888999999999999999999986 689999999999999999998765 589999999988752
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
.+........+|.|+.++-.
T Consensus 84 ----~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 84 ----YLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp ----HHHHTTTTS-EEEEEEE-S-
T ss_pred ----HHHHccCCCccCEEEEcccc
Confidence 22221144678999987643
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.61 E-value=0.00041 Score=61.67 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=59.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhh
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.+++||=||-|.|..+..+.+.. .+|+.||+++..++.|++.+.. .++++++.+|+...--
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----------- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----------- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence 57899999999999999998864 6899999999999999987653 2589999999987531
Q ss_pred cCCC-CceEEEEcCC
Q 023240 213 KSSS-GFAKVVANIP 226 (285)
Q Consensus 213 ~~~~-~~D~Vv~n~P 226 (285)
.... .||+|+.+++
T Consensus 145 ~~~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLT 159 (246)
T ss_dssp TSSST-EEEEEEESS
T ss_pred hccCCcccEEEEeCC
Confidence 2233 8999999754
No 214
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.61 E-value=0.00044 Score=60.89 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccc
Q 023240 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~ 198 (285)
..+.......+..+|+|||+|+|.++..+++. +.+++..|. |+.++.+++ .++|+++.||+.+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD 154 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh
Confidence 34455566666789999999999999999887 679999998 888888888 4699999999983
No 215
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00057 Score=58.08 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=54.0
Q ss_pred EEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+++|||+|.|.=++.+|-. ..+++.+|.+..-+...+.-.... .|++++++++.+ . .....||
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~------------~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P------------EYRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T------------TTTT-EE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c------------ccCCCcc
Confidence 8999999999988877654 679999999998887777666543 489999999998 2 3457899
Q ss_pred EEEEc
Q 023240 220 KVVAN 224 (285)
Q Consensus 220 ~Vv~n 224 (285)
+|++=
T Consensus 118 ~v~aR 122 (184)
T PF02527_consen 118 VVTAR 122 (184)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99984
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=97.50 E-value=0.00087 Score=60.04 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc------CCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~------~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
..+++||=||-|-|..++.+.+...+|+-||+|++.++.+++.+.. .++++++.. +.+ .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L 135 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence 3578999999999999999999866999999999999999985542 257777751 111 2
Q ss_pred CCCCceEEEEcCCCCCc-HHHHHHhccCCCce
Q 023240 214 SSSGFAKVVANIPFNIS-TDVIKQLLPMGDIF 244 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~~-~~i~~~l~~~g~~~ 244 (285)
..++||+||.+..+... -+.+++.+..++.+
T Consensus 136 ~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~ 167 (262)
T PRK00536 136 DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVF 167 (262)
T ss_pred cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEE
Confidence 34679999999544321 12345555555555
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00046 Score=59.91 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+.+++|||+|.|.=++.+|-. +.+|+-+|....-+...+.-.... +|++++++.+++... ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-------------~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-------------EKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-------------ccc
Confidence 589999999999998887743 567999999988887777766544 489999999999852 233
Q ss_pred -ceEEEEc--CCCCCcHHHHHHhccCCCc
Q 023240 218 -FAKVVAN--IPFNISTDVIKQLLPMGDI 243 (285)
Q Consensus 218 -~D~Vv~n--~P~~~~~~i~~~l~~~g~~ 243 (285)
||+|.+= -+.....+....++..++.
T Consensus 135 ~~D~vtsRAva~L~~l~e~~~pllk~~g~ 163 (215)
T COG0357 135 QYDVVTSRAVASLNVLLELCLPLLKVGGG 163 (215)
T ss_pred cCcEEEeehccchHHHHHHHHHhcccCCc
Confidence 9999883 3344445555566655443
No 218
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.0002 Score=62.66 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=41.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI 186 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~ 186 (285)
.+..+|||||-+|.+|+.+|+. + ..|.|+|||+..+..|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 5678999999999999999997 4 47999999999999999998753
No 219
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00071 Score=61.27 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcC------CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~------~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
+++||-||-|.|..+..+.+.. .+++.||+++..++.+++.+... ++++++.+|+.++-- .
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~-----------~ 145 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR-----------D 145 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------h
Confidence 3699999999999999999984 69999999999999999987632 488999999987631 1
Q ss_pred CCCCceEEEEc
Q 023240 214 SSSGFAKVVAN 224 (285)
Q Consensus 214 ~~~~~D~Vv~n 224 (285)
....||+||.+
T Consensus 146 ~~~~fDvIi~D 156 (282)
T COG0421 146 CEEKFDVIIVD 156 (282)
T ss_pred CCCcCCEEEEc
Confidence 23379999997
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.46 E-value=0.00023 Score=59.84 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=50.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++.+|||+||++|..+..+.+.+ .+|+|+|+.+. ....++..+.+|+.+........+.+. .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence 34799999999999999999986 79999999865 222478888888866533222222221 12368
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
+|+|+++.
T Consensus 92 ~dlv~~D~ 99 (181)
T PF01728_consen 92 FDLVLSDM 99 (181)
T ss_dssp ESEEEE--
T ss_pred cceecccc
Confidence 99999986
No 221
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.45 E-value=0.00028 Score=61.91 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=53.2
Q ss_pred HHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh---cC--------CCeEEEEccccc
Q 023240 132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SI--------DQLKVLQEDFVK 198 (285)
Q Consensus 132 ~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~---~~--------~~v~~~~gD~~~ 198 (285)
.+++.+.++++ .+|||.-+|-|.-+..+|..|++|+++|.|+-+....+.-+. .. .+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 35555555554 489999999999999999889999999999988766654332 11 278999999988
Q ss_pred ccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 199 ~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
+-. ....++|+|..+|-|..
T Consensus 144 ~L~-----------~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLR-----------QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCC-----------CHSS--SEEEE--S---
T ss_pred HHh-----------hcCCCCCEEEECCCCCC
Confidence 632 23478999999998864
No 222
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.44 E-value=0.00051 Score=63.68 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhc--------CC----CeEEEEcccccccchhhhhh
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~--------~~----~v~~~~gD~~~~~~~~~~~d 207 (285)
++.+|||+|||-|.-..-.... -..++|+|++...++.|++++.. .. ...++.+|.....+.+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~--- 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK--- 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh---
Confidence 5789999999988755555544 57999999999999999999831 11 35678888775433211
Q ss_pred HHhhhcCCCCceEEEEcCCCC
Q 023240 208 LFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+. .....||+|=+-..+|
T Consensus 139 -~~--~~~~~FDvVScQFalH 156 (331)
T PF03291_consen 139 -LP--PRSRKFDVVSCQFALH 156 (331)
T ss_dssp -SS--STTS-EEEEEEES-GG
T ss_pred -cc--ccCCCcceeehHHHHH
Confidence 10 1225899998765543
No 223
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.43 E-value=0.0019 Score=56.73 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCCccccCCcccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHH-HHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-
Q 023240 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTN-VLLNAGATVLAIEKDQHMVGLVRERFASID- 187 (285)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~-~la~~~~~V~giD~~~~~v~~a~~~~~~~~- 187 (285)
...+...|.|.+.+.+..+.+..-..... .|++||=+|=.--.+.. ++.....+|+.+|+++..++..++..++.+
T Consensus 13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl 92 (243)
T PF01861_consen 13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL 92 (243)
T ss_dssp -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 33566778888888888888776666543 58899999854443322 222236799999999999999998887665
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
+|+.++.|+.+--+. .-.+.||.++.+|||...
T Consensus 93 ~i~~~~~DlR~~LP~----------~~~~~fD~f~TDPPyT~~ 125 (243)
T PF01861_consen 93 PIEAVHYDLRDPLPE----------ELRGKFDVFFTDPPYTPE 125 (243)
T ss_dssp -EEEE---TTS---T----------TTSS-BSEEEE---SSHH
T ss_pred ceEEEEecccccCCH----------HHhcCCCEEEeCCCCCHH
Confidence 799999999774321 234789999999999854
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.40 E-value=0.00073 Score=58.42 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=47.8
Q ss_pred EEEEcCcccHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccc
Q 023240 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (285)
Q Consensus 145 VLDiGcG~G~~t~~la~~~~--~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~ 199 (285)
|.||||--|++...|.+.+. +++++|+++.-++.|+++++..+ ++++..||.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999864 89999999999999999998764 899999997653
No 225
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.33 E-value=0.00067 Score=61.24 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=58.7
Q ss_pred EEEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240 144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv 222 (285)
+++|+.||.|.++..+.+.|.+ |.++|+++.+++..+.|+.. . ++.+|+.++...+ ..+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~----------~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKD----------FIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhh----------cCCCCCEEE
Confidence 5899999999999998888764 78899999999999998742 2 6788888875321 035689999
Q ss_pred EcCCCCCcH
Q 023240 223 ANIPFNIST 231 (285)
Q Consensus 223 ~n~P~~~~~ 231 (285)
+.||-+..+
T Consensus 68 ~gpPCq~fS 76 (275)
T cd00315 68 GGFPCQPFS 76 (275)
T ss_pred eCCCChhhh
Confidence 999965444
No 226
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.0027 Score=57.46 Aligned_cols=95 Identities=11% Similarity=0.246 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccc
Q 023240 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC 199 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~ 199 (285)
..-+-++..+++.+.+.++...+|.--|.|..+..+.... ++++|+|.|+.+++.|++.+..+ ++++++++++.++
T Consensus 6 ~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 6 RHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred CccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3446678889999999999999999999999999998872 68999999999999999998875 5999999998776
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
.... .. .....+|.|+.++
T Consensus 86 ~~~l------~~-~~i~~vDGiL~DL 104 (314)
T COG0275 86 AEAL------KE-LGIGKVDGILLDL 104 (314)
T ss_pred HHHH------Hh-cCCCceeEEEEec
Confidence 5321 11 2234677777653
No 227
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.26 E-value=0.0026 Score=55.32 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=68.7
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
+.+.+|.+||-+|+++|....+++.- .+.|+|||.++.....+-.-.++.+||--+-+|+..-.-.. .
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~---------~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR---------M 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT---------T
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh---------c
Confidence 34568899999999999999999886 46999999999877766666666679999999998543211 1
Q ss_pred CCCCceEEEEcCCCCCcHHHH----HHhccCCCcee
Q 023240 214 SSSGFAKVVANIPFNISTDVI----KQLLPMGDIFS 245 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~~~~i~----~~l~~~g~~~~ 245 (285)
.-+.+|+|+.+.......+++ +.++..|+.+-
T Consensus 140 lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 140 LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEE
Confidence 235789999998766666554 35556656553
No 228
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.18 E-value=0.0014 Score=56.39 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~ 181 (285)
...+.+++++++.... .+++.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4456788888887764 468899999999999999999899999999999999999874
No 229
>PRK11524 putative methyltransferase; Provisional
Probab=97.18 E-value=0.0015 Score=59.27 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~ 184 (285)
.+.+++++++.... .+|+.|||..||+|..+.+..+.+.+.+|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 34577777777665 468899999999999999988889999999999999999999985
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.003 Score=55.29 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=58.6
Q ss_pred HHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEE-EcccccccchhhhhhH
Q 023240 132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHMLSL 208 (285)
Q Consensus 132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~-~gD~~~~~~~~~~~d~ 208 (285)
..++...+. ++..+||||+-||.+|..+.++| .+|+|||.....+.. .++..+++... ..|+..+...+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~----- 140 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPED----- 140 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHH-----
Confidence 344444443 67899999999999999999996 489999987543322 33334555544 34565554321
Q ss_pred HhhhcCCCCceEEEEcCCCCCcHHHH
Q 023240 209 FERRKSSSGFAKVVANIPFNISTDVI 234 (285)
Q Consensus 209 ~~~~~~~~~~D~Vv~n~P~~~~~~i~ 234 (285)
-....|+++++..|-....++
T Consensus 141 -----~~~~~d~~v~DvSFISL~~iL 161 (245)
T COG1189 141 -----FTEKPDLIVIDVSFISLKLIL 161 (245)
T ss_pred -----cccCCCeEEEEeehhhHHHHH
Confidence 123678999988876555433
No 231
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0022 Score=55.85 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEc
Q 023240 127 SEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID----QLKVLQE 194 (285)
Q Consensus 127 ~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~--~~~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~g 194 (285)
.+.+..+..+|... +.-++||||.|.-.+--.+-- .|.+.+|-|+|+..++.|+.++..++ .|++...
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 45556666665422 345799999887665433332 37799999999999999999998774 4555443
Q ss_pred ccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHHHH
Q 023240 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (285)
Q Consensus 195 D~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i~~ 235 (285)
.=.+--+. +++ .....||...+||||+...+-..
T Consensus 138 k~~~~if~----gii---g~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 138 KDSDAIFN----GII---GKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred cCcccccc----ccc---cccceeeeEecCCCcchhHHHHH
Confidence 22111111 111 23467999999999998765543
No 232
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.02 E-value=0.0012 Score=54.56 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=39.2
Q ss_pred EEEeCCHHHHHHHHHHhhcC-----CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 167 LAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 167 ~giD~~~~~v~~a~~~~~~~-----~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+|+|+|++|++.|+++.... .+++++++|+.++|+ ..+.||.|+++.-++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------------~~~~fD~v~~~~~l~ 55 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------------DDCEFDAVTMGYGLR 55 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------------CCCCeeEEEecchhh
Confidence 48999999999998765421 379999999999874 456799998875443
No 233
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.00 E-value=0.003 Score=54.78 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=49.0
Q ss_pred CCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC-CC-eEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~-~~-v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
..++||.|+|+|..|..+... -.+|..||.++.+++.|++.+... ++ .++.+....++. +....|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------P~~~~Y 123 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------PEEGKY 123 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-E
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------CCCCcE
Confidence 468999999999999876544 568999999999999999887652 23 456666666664 345789
Q ss_pred eEEEEc
Q 023240 219 AKVVAN 224 (285)
Q Consensus 219 D~Vv~n 224 (285)
|+|...
T Consensus 124 DlIW~Q 129 (218)
T PF05891_consen 124 DLIWIQ 129 (218)
T ss_dssp EEEEEE
T ss_pred eEEEeh
Confidence 999885
No 234
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.97 E-value=0.0046 Score=55.82 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID 187 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~ 187 (285)
.+.+|||+|||.|..+.++... -.+++++|.|+.|++.++..+...+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 5779999999999877665553 3489999999999999998776543
No 235
>PHA01634 hypothetical protein
Probab=96.91 E-value=0.0022 Score=50.88 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI 186 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~ 186 (285)
.+++|+|||++.|.+++.++-+|+ +|+++|.++...+..+++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 578999999999999999999875 7999999999999999988754
No 236
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.91 E-value=0.0025 Score=58.08 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC----C----CeEEEEcccccccchhhhhhHHh
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLFE 210 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~----~----~v~~~~gD~~~~~~~~~~~d~~~ 210 (285)
.+++.++|+|||-|.-.+..-+.| .+++|+||.+-.++.|++++... . .+.++.+|.....+. |+++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~----d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLM----DLLE 191 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHH----Hhcc
Confidence 467889999999999887776665 58999999999999999988742 1 478999998765533 2221
Q ss_pred hhcCCCCceEEEEcCC
Q 023240 211 RRKSSSGFAKVVANIP 226 (285)
Q Consensus 211 ~~~~~~~~D~Vv~n~P 226 (285)
.+.++||+|=+--.
T Consensus 192 --~~dp~fDivScQF~ 205 (389)
T KOG1975|consen 192 --FKDPRFDIVSCQFA 205 (389)
T ss_pred --CCCCCcceeeeeee
Confidence 23344899876544
No 237
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0016 Score=61.55 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=48.3
Q ss_pred EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccccc
Q 023240 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~ 200 (285)
.|||||+|||-++...++.|+ .|+|+|.-.+|.+.|++-..++| +|+++.---.++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 699999999999998888865 79999999999999999998875 7888765554443
No 238
>PRK13699 putative methylase; Provisional
Probab=96.90 E-value=0.0041 Score=54.63 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
..+.++.+.+++... .+|+.|||.-||+|..+.+..+.+.+.+|+|++++.++.+.++++.
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345677777776554 3688999999999999999888899999999999999999998864
No 239
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.88 E-value=0.0064 Score=52.33 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCe-EEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v-~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+.+|||||||||..+..+|+. ...-.--|.++......+...... +|+ .-+.-|+.+-+..-.. .+.....
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~----~~~~~~~ 101 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL----PAPLSPE 101 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc----ccccCCC
Confidence 336999999999999999987 567778899988876666655543 243 2345565544221000 0001345
Q ss_pred CceEEEEc
Q 023240 217 GFAKVVAN 224 (285)
Q Consensus 217 ~~D~Vv~n 224 (285)
.||.|++.
T Consensus 102 ~~D~i~~~ 109 (204)
T PF06080_consen 102 SFDAIFCI 109 (204)
T ss_pred Ccceeeeh
Confidence 79999884
No 240
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0058 Score=52.59 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++..|+|+|+..|..+..+++. + ..|+|||+.| .+..++|.++.+|+.+-+..+..... ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l~~~----l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKLLEA----LGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHHHHH----cCCC
Confidence 36789999999999999999887 3 3599999985 23335799999999987654332222 3344
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
.+|+|++++.
T Consensus 111 ~~DvV~sD~a 120 (205)
T COG0293 111 PVDVVLSDMA 120 (205)
T ss_pred CcceEEecCC
Confidence 5799998744
No 241
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.78 E-value=0.031 Score=50.26 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHH
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~ 180 (285)
.+.+||=.|||.|.++-.+|..|..+.|.|.|--|+-...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence 4568999999999999999999999999999999865544
No 242
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.003 Score=51.40 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHI 201 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~ 201 (285)
.+-++.++..+.-.+..+.+|+|+|.|.+-.+.++.+ ..-+|+|+|+..+.+++-+.-.. ...++..-|..+.++
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 4456667777777776799999999999999999987 58999999999999998765433 367888888877764
No 243
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.76 E-value=0.004 Score=56.74 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv 222 (285)
+++|+.||.|.++..+...|. .|.++|+++.+++.-+.|+. ....+|+.++...+ .+. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~---------l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSD---------LPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHH---------HHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----cccccccccccccc---------ccc-cceEEE
Confidence 689999999999999999885 68999999999999999984 88999999886431 122 589999
Q ss_pred EcCC
Q 023240 223 ANIP 226 (285)
Q Consensus 223 ~n~P 226 (285)
+.||
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 9988
No 244
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.73 E-value=0.0019 Score=56.27 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
.+.++|||||-|++...+...+ .+++-+|.|..|++.++..-...-.+....+|-+.+++ .+.++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf------------~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDF------------KENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccc------------cccchhh
Confidence 4689999999999999998875 58999999999999988653211144567788777775 4567888
Q ss_pred EEEcCCCCCcH
Q 023240 221 VVANIPFNIST 231 (285)
Q Consensus 221 Vv~n~P~~~~~ 231 (285)
||+.+..++..
T Consensus 141 iisSlslHW~N 151 (325)
T KOG2940|consen 141 IISSLSLHWTN 151 (325)
T ss_pred hhhhhhhhhhc
Confidence 88877766554
No 245
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.67 E-value=0.012 Score=54.39 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=49.9
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHhh--cCCCeEE--EEcccccc
Q 023240 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC 199 (285)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~~~--~~~~v~~--~~gD~~~~ 199 (285)
.|...+. ++..++|+|||.|.=+..+.+. ....++||+|.++++.+..++. ..+.+++ ++||+.+.
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 4444443 5668999999999977665542 3579999999999999999987 3366655 88988664
No 246
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.63 E-value=0.0041 Score=53.61 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=56.0
Q ss_pred cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHH-HHhhcCCCe
Q 023240 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVR-ERFASIDQL 189 (285)
Q Consensus 117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~-~~~~~~~~v 189 (285)
.|.|...+..+.-...+.+.+-..+++.|+|+|.-.|.+++.+|.. .++|+|||++-+...... +...-.++|
T Consensus 8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 4566655555544444444443336789999999999999888763 369999999755443322 211112589
Q ss_pred EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
+++.||..+....+...+. ...+...+||-+.-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~----~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVREL----ASPPHPVLVILDSS 120 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS--------SSEEEEESS-
T ss_pred EEEECCCCCHHHHHHHHHh----hccCCceEEEECCC
Confidence 9999999876543222211 23355678887765
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.63 E-value=0.034 Score=50.20 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=50.8
Q ss_pred CCEEEEEcCcccHHH-HHHHHh---CCEEEEEeCCHHHHHHHHHHhhc-C---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 142 GDIVLEIGPGTGSLT-NVLLNA---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t-~~la~~---~~~V~giD~~~~~v~~a~~~~~~-~---~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
+.+|+=||||.=-+| +.+++. +..|+++|+++++++.+++-++. . .+++++.+|+.+.+ .
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~------------~ 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT------------Y 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-------------G
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc------------c
Confidence 459999999965554 555544 46899999999999999987762 2 38999999998765 2
Q ss_pred CCCCceEEEEcCCCC----CcHHHHHHhcc
Q 023240 214 SSSGFAKVVANIPFN----ISTDVIKQLLP 239 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~----~~~~i~~~l~~ 239 (285)
+...||+|+...--. .-.+++.+|..
T Consensus 189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~~ 218 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGMDAEPKEEILEHLAK 218 (276)
T ss_dssp G----SEEEE-TT-S----SHHHHHHHHHH
T ss_pred ccccCCEEEEhhhcccccchHHHHHHHHHh
Confidence 346789887764444 44567776653
No 248
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.56 E-value=0.066 Score=48.47 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--C--CEEEEEeCCHHHHHHHHHHhhcCC--Ce-EEEEcccccc
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA--G--ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKC 199 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~--~~V~giD~~~~~v~~a~~~~~~~~--~v-~~~~gD~~~~ 199 (285)
..+-+||||.||.|.+.+-.... . .+|.-.|.++..++..++.++..+ ++ +|.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 35679999999999988766654 2 489999999999999999988754 55 9999999874
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.49 E-value=0.015 Score=50.45 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccccc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~--~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~ 198 (285)
.+..+.||||--||+...+.+.+ ..+++.|+++..++.|.+++.+++ .+++..+|.+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 45569999999999999998873 589999999999999999998764 78888888754
No 250
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.46 E-value=0.021 Score=49.02 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCCEEEEEcCcccH--HHH--HHHHh-----C--CEEEEEeCCHHHHHHHHH
Q 023240 141 EGDIVLEIGPGTGS--LTN--VLLNA-----G--ATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 141 ~~~~VLDiGcG~G~--~t~--~la~~-----~--~~V~giD~~~~~v~~a~~ 181 (285)
+.-+|+..||++|. +++ .+.+. + .+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 45689999999998 333 33441 1 489999999999999984
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.42 E-value=0.037 Score=42.51 Aligned_cols=71 Identities=28% Similarity=0.449 Sum_probs=48.3
Q ss_pred EEEEcCcccHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHhhcCCC--eEEEEccccc--ccchhhhhhHHhhhcCCCC
Q 023240 145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK--CHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 145 VLDiGcG~G~~t~~la~~~---~~V~giD~~~~~v~~a~~~~~~~~~--v~~~~gD~~~--~~~~~~~~d~~~~~~~~~~ 217 (285)
++|+|||+|..+ .++... ..++++|.++.+++.++........ +.+..+|... .++. ....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 119 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE-----------DSAS 119 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCC-----------CCCc
Confidence 999999999977 444432 4899999999999986655433111 6888888776 4431 1136
Q ss_pred ceEEEEcCCC
Q 023240 218 FAKVVANIPF 227 (285)
Q Consensus 218 ~D~Vv~n~P~ 227 (285)
+|.+......
T Consensus 120 ~d~~~~~~~~ 129 (257)
T COG0500 120 FDLVISLLVL 129 (257)
T ss_pred eeEEeeeeeh
Confidence 7888544443
No 252
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.39 E-value=0.0066 Score=55.91 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=54.1
Q ss_pred EEEEcCcccHHHHHHHHhCCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEE
Q 023240 145 VLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (285)
Q Consensus 145 VLDiGcG~G~~t~~la~~~~~-V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~ 223 (285)
|+|+.||.|.++..+.+.|.+ +.++|+++.+++..+.|+. + .++.+|+.++... +.+.+|++++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~-----------~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPS-----------DIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhh-----------hCCCcCEEEe
Confidence 689999999999999888876 5679999999999998874 3 5667888887532 2245799999
Q ss_pred cCC
Q 023240 224 NIP 226 (285)
Q Consensus 224 n~P 226 (285)
.||
T Consensus 66 g~P 68 (315)
T TIGR00675 66 GFP 68 (315)
T ss_pred cCC
Confidence 988
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.39 E-value=0.01 Score=55.90 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=68.7
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhH
Q 023240 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSL 208 (285)
Q Consensus 134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~ 208 (285)
+..+.++++.+|||..+..|.=|.++|.. .+.|+|.|.+...+...+.|+...+ |..+...|..++|-.
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~------ 307 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK------ 307 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc------
Confidence 34567789999999999999988888876 4689999999999999999998775 778888898876522
Q ss_pred HhhhcCCCCceEEEEcCCCC
Q 023240 209 FERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 209 ~~~~~~~~~~D~Vv~n~P~~ 228 (285)
.-+++||.|+.+.|=+
T Consensus 308 ----~~~~~fDRVLLDAPCS 323 (460)
T KOG1122|consen 308 ----EFPGSFDRVLLDAPCS 323 (460)
T ss_pred ----ccCcccceeeecCCCC
Confidence 1234799999987743
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.38 E-value=0.0068 Score=58.39 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcC--CCC--CEEEEEcCcccHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHhhcCCCeEEEEcc--cc
Q 023240 127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRERFASIDQLKVLQED--FV 197 (285)
Q Consensus 127 ~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~t~~la~~~~~V~gi---D~~~~~v~~a~~~~~~~~~v~~~~gD--~~ 197 (285)
...++.|.+.+.. ..+ ..+||+|||+|.++..|..++..+.++ |..+..++.|.++ .+-.+.+- ..
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~~~~s~ 173 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIGVLGSQ 173 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhhhhccc
Confidence 4556666666655 233 479999999999999999987654444 3345556666554 23233222 46
Q ss_pred cccchhhhhhHHhh
Q 023240 198 KCHIRSHMLSLFER 211 (285)
Q Consensus 198 ~~~~~~~~~d~~~~ 211 (285)
.+|+++..||++++
T Consensus 174 rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 174 RLPFPSNAFDMVHC 187 (506)
T ss_pred cccCCccchhhhhc
Confidence 78888888888875
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.36 E-value=0.012 Score=51.99 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=45.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEccccccc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH 200 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~ 200 (285)
.+.+|+|||||.=-++...... +..++|+|+|..+++....-+...+ +.++...|...-+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 4789999999999999876554 5799999999999999998876554 7788888887654
No 256
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.32 E-value=0.018 Score=56.43 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=69.8
Q ss_pred cccCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---C---CEEEEEeCCHHHHHHHHHHhhcC----CCe
Q 023240 122 HYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFASI----DQL 189 (285)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~---~~V~giD~~~~~v~~a~~~~~~~----~~v 189 (285)
.+.++.+++..+.+.+.+. ++..|.|.-||+|.+....... + ..++|.|....+...++.+..-. +..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3888999999998887754 4578999999999987654331 1 36999999999999999885322 133
Q ss_pred EEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCC
Q 023240 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (285)
Q Consensus 190 ~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~ 229 (285)
....+|-+.-+ |+ .....||.|++||||..
T Consensus 276 ~~~~~dtl~~~------d~----~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 276 NIINADTLTTK------EW----ENENGFEVVVSNPPYSI 305 (501)
T ss_pred CcccCCcCCCc------cc----cccccCCEEeecCCccc
Confidence 44455544322 11 12356899999999964
No 257
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.21 E-value=0.0047 Score=55.77 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=65.6
Q ss_pred CCCEEEEEcCcccHHHH-HHHHhC-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTN-VLLNAG-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~-~la~~~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+..|.|+.+|.||+|. .+..+| ..|+++|.+|..++.++++++.++ ...+++||-...- ..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------------~~ 260 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------------PR 260 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------------cc
Confidence 35789999999999999 666665 489999999999999999998763 5567777766542 23
Q ss_pred CCceEEEEc-CCCC--CcHHHHHHhccCCCce
Q 023240 216 SGFAKVVAN-IPFN--ISTDVIKQLLPMGDIF 244 (285)
Q Consensus 216 ~~~D~Vv~n-~P~~--~~~~i~~~l~~~g~~~ 244 (285)
...|.|... +|-. ...-.++.|.+.|+.+
T Consensus 261 ~~AdrVnLGLlPSse~~W~~A~k~Lk~eggsi 292 (351)
T KOG1227|consen 261 LRADRVNLGLLPSSEQGWPTAIKALKPEGGSI 292 (351)
T ss_pred ccchheeeccccccccchHHHHHHhhhcCCcE
Confidence 456776554 5532 2334566777766644
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.034 Score=47.66 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=71.5
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 138 AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+.++.+||=+|+.+|....+++.- + +.++|||.+++....+-...++.+|+--+.+|+..-.-. .. --
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y---~~------~V 143 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKY---RH------LV 143 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHh---hh------hc
Confidence 4668999999999999999999986 3 689999999998887777777678999999999764311 11 12
Q ss_pred CCceEEEEcCCCCCcHHHH----HHhccCCC
Q 023240 216 SGFAKVVANIPFNISTDVI----KQLLPMGD 242 (285)
Q Consensus 216 ~~~D~Vv~n~P~~~~~~i~----~~l~~~g~ 242 (285)
...|+|+.+...-...+++ +.+++.++
T Consensus 144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHhcccCC
Confidence 4589999887665555554 34555555
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.19 E-value=0.011 Score=51.02 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=40.5
Q ss_pred ccCCHHHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhhc
Q 023240 123 YMLNSEINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
+..+-.++..+.+.. .-..+-++.|..||.|++.-.+.-. -..|+|-|+|+++++.|++|+.-
T Consensus 29 p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 29 PAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp ----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 334445555555443 2334568999999999987666543 24899999999999999988753
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.14 E-value=0.02 Score=53.28 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhh--c-------CCCeEEEEcccccccchhhhhhHH
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA--S-------IDQLKVLQEDFVKCHIRSHMLSLF 209 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~--~-------~~~v~~~~gD~~~~~~~~~~~d~~ 209 (285)
...+||=+|-|-|-....+.+. -.+++-+|.||+|++.++++.. + .++++++..|+.++--
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr-------- 360 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR-------- 360 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH--------
Confidence 4578999999999999999887 3589999999999999995432 1 1489999999987632
Q ss_pred hhhcCCCCceEEEEcCC
Q 023240 210 ERRKSSSGFAKVVANIP 226 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P 226 (285)
.....||.||.+.|
T Consensus 361 ---~a~~~fD~vIVDl~ 374 (508)
T COG4262 361 ---TAADMFDVVIVDLP 374 (508)
T ss_pred ---hhcccccEEEEeCC
Confidence 24468999999866
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.08 E-value=0.0039 Score=58.71 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=62.3
Q ss_pred cccCCcccCCHHHH--HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---C-CeE
Q 023240 117 KSLGQHYMLNSEIN--DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLK 190 (285)
Q Consensus 117 ~~~g~~~~~~~~~~--~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~-~v~ 190 (285)
-.||..|+-++-.. .++.. -.++|..|.|+.||.|-+++.++..++.|++-|.++++++.++.|++.+ + +++
T Consensus 225 ~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~ie 302 (495)
T KOG2078|consen 225 FDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIE 302 (495)
T ss_pred EecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhhee
Confidence 34566554433222 22222 3347889999999999999999999999999999999999999999865 2 589
Q ss_pred EEEcccccc
Q 023240 191 VLQEDFVKC 199 (285)
Q Consensus 191 ~~~gD~~~~ 199 (285)
++..|+.+.
T Consensus 303 i~Nmda~~F 311 (495)
T KOG2078|consen 303 IFNMDAKDF 311 (495)
T ss_pred eecccHHHH
Confidence 999888654
No 262
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.08 E-value=0.031 Score=50.80 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=39.7
Q ss_pred ccCCHHHHHHHHHHhcCC-CCCEEEEEcCcccH--HHHHH--HHh------CCEEEEEeCCHHHHHHHHHH
Q 023240 123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVL--LNA------GATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~--~t~~l--a~~------~~~V~giD~~~~~v~~a~~~ 182 (285)
|+-++...+.+.+.+... ..-+|+..||+||. ++++| .+. ..+|+|+|+|+.+++.|++-
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 444444444444433222 23599999999998 44444 332 24799999999999999864
No 263
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.00 E-value=0.055 Score=52.49 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=59.7
Q ss_pred CEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh----hhHHhhh-cCCC
Q 023240 143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS 216 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~----~d~~~~~-~~~~ 216 (285)
-+++|+.||.|.+...+-..|. -|.++|+++.+++.-+.|+...+....+.+|+.++...+.. .+..... ...+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p 168 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP 168 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence 4899999999999999988776 57889999999999888874334556677888877532110 0000000 1124
Q ss_pred CceEEEEcCCCC
Q 023240 217 GFAKVVANIPFN 228 (285)
Q Consensus 217 ~~D~Vv~n~P~~ 228 (285)
..|++++.||=+
T Consensus 169 ~~DvL~gGpPCQ 180 (467)
T PRK10458 169 DHDVLLAGFPCQ 180 (467)
T ss_pred CCCEEEEcCCCC
Confidence 579999998843
No 264
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.03 Score=47.46 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEc-ccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~g-D~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++.+|||+||..|..+....++ .+.|.|||+- ++..-+.+.++.+ |+.+-... ..+.++ .+..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~~Ga~~i~~~dvtdp~~~---~ki~e~-lp~r 135 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPPEGATIIQGNDVTDPETY---RKIFEA-LPNR 135 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCCCCcccccccccCCHHHH---HHHHHh-CCCC
Confidence 6889999999999999887765 4689999975 3333346777777 66664322 233333 3556
Q ss_pred CceEEEEcCCC
Q 023240 217 GFAKVVANIPF 227 (285)
Q Consensus 217 ~~D~Vv~n~P~ 227 (285)
..|+|++++.-
T Consensus 136 ~VdvVlSDMap 146 (232)
T KOG4589|consen 136 PVDVVLSDMAP 146 (232)
T ss_pred cccEEEeccCC
Confidence 78999998554
No 265
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.79 E-value=0.047 Score=47.19 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhh
Q 023240 127 SEINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~ 205 (285)
..-++.+++++.-.+ ...|.|+|||.+.++..+. .+.+|...|+.. .|-.++.+|+..+|+
T Consensus 57 ~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva-------------~n~~Vtacdia~vPL---- 118 (219)
T PF05148_consen 57 VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA-------------PNPRVTACDIANVPL---- 118 (219)
T ss_dssp S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS--------------SSTTEEES-TTS-S-----
T ss_pred CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC-------------CCCCEEEecCccCcC----
Confidence 334567777776554 4689999999999996643 356899999763 123478899999996
Q ss_pred hhHHhhhcCCCCceEEEEcCCCCCc--HHHH---HHhccCCCce
Q 023240 206 LSLFERRKSSSGFAKVVANIPFNIS--TDVI---KQLLPMGDIF 244 (285)
Q Consensus 206 ~d~~~~~~~~~~~D~Vv~n~P~~~~--~~i~---~~l~~~g~~~ 244 (285)
+.+..|++|..+..-.+ .+.+ .+++..++.+
T Consensus 119 --------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 119 --------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp ---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEE
T ss_pred --------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEE
Confidence 44778998887665322 2222 3555555544
No 266
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.78 E-value=0.022 Score=51.98 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=54.8
Q ss_pred EEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 145 VLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 145 VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
=+|||+|+-.+--.+... +...+++|+++..+..|+.|+.+++ .+.+++-...+.-+.+ .+.. .....||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d----~~~~-~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMD----ALKE-ESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchh----hhcc-Cccceee
Confidence 378887766655444333 6789999999999999999998764 6777766554332211 1111 1234599
Q ss_pred EEEEcCCCCCc
Q 023240 220 KVVANIPFNIS 230 (285)
Q Consensus 220 ~Vv~n~P~~~~ 230 (285)
.+.+||||...
T Consensus 181 FcMcNPPFfe~ 191 (419)
T KOG2912|consen 181 FCMCNPPFFEN 191 (419)
T ss_pred EEecCCchhhc
Confidence 99999999765
No 267
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.031 Score=51.72 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCEEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC-Cce
Q 023240 142 GDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFA 219 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~-~~D 219 (285)
..+++|+.||.|.+...+...|. -+.++|+++.+++.-+.|+. .-.++.+|+.++.... ... .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~----------~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEA----------LRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhh----------ccccCCC
Confidence 35799999999999999988886 47889999999999999975 2567778887765321 112 789
Q ss_pred EEEEcCCC
Q 023240 220 KVVANIPF 227 (285)
Q Consensus 220 ~Vv~n~P~ 227 (285)
++++.||=
T Consensus 70 vligGpPC 77 (328)
T COG0270 70 VLIGGPPC 77 (328)
T ss_pred EEEeCCCC
Confidence 99999884
No 268
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.57 E-value=0.045 Score=48.69 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchh
Q 023240 125 LNSEINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~ 203 (285)
++..-++.+++.+...++ ..|.|+|||.+.++. ..-.+|...|+.. .|-+++.+|+.++|+.
T Consensus 163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~- 225 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLE- 225 (325)
T ss_pred CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCc-
Confidence 344446777888776654 579999999999876 3346799998652 2567899999999964
Q ss_pred hhhhHHhhhcCCCCceEEEEcCCCCC--cHH---HHHHhccCCCcee
Q 023240 204 HMLSLFERRKSSSGFAKVVANIPFNI--STD---VIKQLLPMGDIFS 245 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P~~~--~~~---i~~~l~~~g~~~~ 245 (285)
..+.|++|.-+..-. ..+ ...+++..|+.+.
T Consensus 226 -----------d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~ 261 (325)
T KOG3045|consen 226 -----------DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLY 261 (325)
T ss_pred -----------cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEE
Confidence 466788776544321 122 2346777777664
No 269
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.50 E-value=0.032 Score=49.08 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=69.6
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.+.++++.+||=+|+++|+.-.....- ..-|++||.+...=..+-.-.++..||--+.-|+....-.-
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR--------- 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR--------- 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------
Confidence 345668999999999999999888876 35799999987665555444444468888888886532100
Q ss_pred cCCCCceEEEEcCCCCCcHHHH----HHhccCCCce
Q 023240 213 KSSSGFAKVVANIPFNISTDVI----KQLLPMGDIF 244 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P~~~~~~i~----~~l~~~g~~~ 244 (285)
..-+..|+||++.+.....+++ ..++..++.|
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhf 257 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHF 257 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeE
Confidence 1235789999997765555554 3555666655
No 270
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.36 E-value=0.01 Score=45.19 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=24.7
Q ss_pred EEEcCcccHHHHHHHHh---C--CEEEEEeCCHH---HHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 146 LDiGcG~G~~t~~la~~---~--~~V~giD~~~~---~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
||||+..|.++..+++. . .+++++|..+. .-+..++ ....++++++.+|..+.-. . ....+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~---------~~~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S---------LPDGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H---------HHH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H---------cCCCC
Confidence 69999999999988864 2 37999999984 3333332 1222489999999966421 0 12367
Q ss_pred ceEEEEcCCC
Q 023240 218 FAKVVANIPF 227 (285)
Q Consensus 218 ~D~Vv~n~P~ 227 (285)
+|+++.+-..
T Consensus 70 ~dli~iDg~H 79 (106)
T PF13578_consen 70 IDLIFIDGDH 79 (106)
T ss_dssp EEEEEEES--
T ss_pred EEEEEECCCC
Confidence 9999998653
No 271
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.24 E-value=0.0074 Score=51.87 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=57.9
Q ss_pred HhCCCCCccccCCcccCCHHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 109 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~ 182 (285)
.+..+..-..+|..|+.+++--++++..-.+. .+.++||+|+|.|.++..|+..-.+|++.|.|..|....++.
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 33345545567888998888877776655332 357999999999999999998767899999999999988765
No 272
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.12 E-value=0.19 Score=42.88 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=60.2
Q ss_pred cccCCcccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhhcCCCeE
Q 023240 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLK 190 (285)
Q Consensus 117 ~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~~~~~v~ 190 (285)
.|.|...+..+.-...+.+.+-..++..|+|+|.-.|.+++..|.. | .+|+++|+|-..+..+... .+.|.
T Consensus 45 twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~ 121 (237)
T COG3510 45 TWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDIL 121 (237)
T ss_pred eEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeE
Confidence 4567766666665555555555557889999999999999988864 4 6999999986655444433 36899
Q ss_pred EEEcccccccc
Q 023240 191 VLQEDFVKCHI 201 (285)
Q Consensus 191 ~~~gD~~~~~~ 201 (285)
+++|+..+...
T Consensus 122 f~egss~dpai 132 (237)
T COG3510 122 FIEGSSTDPAI 132 (237)
T ss_pred EEeCCCCCHHH
Confidence 99999887653
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.47 E-value=0.3 Score=45.36 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred hcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcc-cccccchhhhhhHHhhhc
Q 023240 137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 137 l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD-~~~~~~~~~~~d~~~~~~ 213 (285)
...+++++|+=+|+| .|.++..+|+. +++|+++|++++-.+.|++.- .-.++.+. ..... .
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG----Ad~~i~~~~~~~~~------------~ 225 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG----ADHVINSSDSDALE------------A 225 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC----CcEEEEcCCchhhH------------H
Confidence 456688888888877 45577888885 899999999999999998763 23344432 11111 0
Q ss_pred CCCCceEEEEcCCCCCcHHHHHHhccCCCce
Q 023240 214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (285)
Q Consensus 214 ~~~~~D~Vv~n~P~~~~~~i~~~l~~~g~~~ 244 (285)
-.+.+|+|+...|.....+.++.|..+|.+.
T Consensus 226 ~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 226 VKEIADAIIDTVGPATLEPSLKALRRGGTLV 256 (339)
T ss_pred hHhhCcEEEECCChhhHHHHHHHHhcCCEEE
Confidence 1123888888766333344455554444443
No 274
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.40 E-value=0.14 Score=48.01 Aligned_cols=41 Identities=34% Similarity=0.487 Sum_probs=34.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~ 181 (285)
+-+.|.|+|+|.|+++..|+-. +..|.|||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3478999999999999999876 8899999999877776653
No 275
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.30 E-value=0.048 Score=46.84 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=46.6
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC---------CCeEEEEcccccc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC 199 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~---------~~v~~~~gD~~~~ 199 (285)
.-.+.|||||-|.+...++.. ..-+.|.||-....++.+.++.+. .|+.+.+.++...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 346999999999999999987 568999999888888877776532 3788888887664
No 276
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.24 E-value=0.21 Score=39.69 Aligned_cols=75 Identities=13% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 141 EGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 141 ~~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
...+|.|+|-|.=. .+..|++.|..|+++|+++. +.. ..+.++..|+.+-.+. + =...|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~-----i------Y~~a~ 72 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP--EGVNFVVDDIFNPNLE-----I------YEGAD 72 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HH-----H------HTTEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc--cCcceeeecccCCCHH-----H------hcCCc
Confidence 34599999988655 56667777999999999987 111 3688999999875431 1 13568
Q ss_pred EEEE-cCCCCCcHHHHH
Q 023240 220 KVVA-NIPFNISTDVIK 235 (285)
Q Consensus 220 ~Vv~-n~P~~~~~~i~~ 235 (285)
+|.+ +||-....++++
T Consensus 73 lIYSiRPP~El~~~il~ 89 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILE 89 (127)
T ss_dssp EEEEES--TTSHHHHHH
T ss_pred EEEEeCCChHHhHHHHH
Confidence 9988 688887777665
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.15 Score=47.51 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=65.3
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHhCC------EEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhh
Q 023240 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~------~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~ 206 (285)
-.+.++++++|||..+..|.-|+.+.+..+ .|++=|.+...+.......+.. +++.+...|+...|-....
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~- 227 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK- 227 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence 345677999999999999999988887632 8999999999999998887654 3777777887766532100
Q ss_pred hHHhhhcCCCCceEEEEcCC
Q 023240 207 SLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n~P 226 (285)
++-+ .....||.|+++-|
T Consensus 228 ~~~~--~~~~~fDrVLvDVP 245 (375)
T KOG2198|consen 228 DGND--KEQLKFDRVLVDVP 245 (375)
T ss_pred cCch--hhhhhcceeEEecc
Confidence 1100 13356999999866
No 278
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.18 E-value=0.51 Score=42.90 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.|+.||==|.|.|- ++..+|+++++++-.|++++..+...+.+++.|.+.....|..+..--....+-++ .+-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence 57889998888876 67777888999999999999999988888776788899999887653334444444 34567
Q ss_pred ceEEEEcC-------CCCCcHHHHHH
Q 023240 218 FAKVVANI-------PFNISTDVIKQ 236 (285)
Q Consensus 218 ~D~Vv~n~-------P~~~~~~i~~~ 236 (285)
.|++|-|. -++...+.+++
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHH
Confidence 88888872 24455555554
No 279
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.2 Score=46.71 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCEEEEEcCcccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHhhcC-C-CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~~~~~-~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+.+|+|.-+|+|.=++..|.. +. +|+.-|+|+.+++.+++|++.+ + +..+++.|+..+-. .....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~-----------~~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH-----------ELHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH-----------hcCCC
Confidence 679999999999999998876 44 8999999999999999999977 3 67777788877642 22366
Q ss_pred ceEEEEcCCCCCcHHHHH
Q 023240 218 FAKVVANIPFNISTDVIK 235 (285)
Q Consensus 218 ~D~Vv~n~P~~~~~~i~~ 235 (285)
||+|=.+ ||.-+.|+++
T Consensus 122 fd~IDiD-PFGSPaPFlD 138 (380)
T COG1867 122 FDVIDID-PFGSPAPFLD 138 (380)
T ss_pred ccEEecC-CCCCCchHHH
Confidence 7777554 5666666665
No 280
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.85 E-value=0.23 Score=44.62 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCCC-CEEEEEcCcccH--HHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCCC--eEEEEccccc
Q 023240 127 SEINDQLAAAAAVQEG-DIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK 198 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~-~~VLDiGcG~G~--~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~~--v~~~~gD~~~ 198 (285)
+..+.+.++.+.-..| ...||||||.-. .+-.+|+. .++|+=+|.++-.++.++..+..+++ ..++.+|+.+
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 4445566666655434 579999999764 34455554 68999999999999999999887766 8999999987
Q ss_pred cc
Q 023240 199 CH 200 (285)
Q Consensus 199 ~~ 200 (285)
..
T Consensus 133 p~ 134 (267)
T PF04672_consen 133 PE 134 (267)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 281
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.75 E-value=0.18 Score=48.58 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=66.7
Q ss_pred EEEEEcCcccHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHh-hcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEE
Q 023240 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~V~giD~~~~~v~~a~~~~-~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~V 221 (285)
++|-+|||.-.++..+-+.|. .|+.+|+|+-.++...... ...+-.++...|+....+++..||++ .+.+..|..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiV---IdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIV---IDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEE---EecCccccc
Confidence 899999999999988887764 7999999999999887765 34468899999999999998888887 567778888
Q ss_pred EEcC
Q 023240 222 VANI 225 (285)
Q Consensus 222 v~n~ 225 (285)
+...
T Consensus 128 ~~de 131 (482)
T KOG2352|consen 128 FEDE 131 (482)
T ss_pred cCCc
Confidence 7763
No 282
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.66 E-value=0.49 Score=41.17 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.+|.+||++|.|.|.....+.++. .+-+-||.++..++..+..--. ..||.++.|-..+.-.. ...+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~----------L~d~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT----------LPDKH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc----------ccccC
Confidence 468899999999999998888773 4566799999999998877432 24899999877665211 34566
Q ss_pred ceEEEEcC--CCC-Cc---HHHHHHhccCCCcee
Q 023240 218 FAKVVANI--PFN-IS---TDVIKQLLPMGDIFS 245 (285)
Q Consensus 218 ~D~Vv~n~--P~~-~~---~~i~~~l~~~g~~~~ 245 (285)
||.|+-+- |+. .. .+.+-+|+.+++.++
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 99998762 322 11 123346666666664
No 283
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.94 E-value=0.2 Score=46.95 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccc
Q 023240 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~ 197 (285)
++......=...+.+.+.+|.+|+|+.|..|.-|.++|.. ..+++|.|.++...+..++.+...+ .++..++|+.
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~ 274 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL 274 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence 4444444445566777888999999999999999998874 5799999999999999988877554 7788899998
Q ss_pred cccchhhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 198 ~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
..+.++ .-...-.++.+|+-+
T Consensus 275 ~t~~~~----------~~~~v~~iL~DpscS 295 (413)
T KOG2360|consen 275 NTATPE----------KFRDVTYILVDPSCS 295 (413)
T ss_pred CCCCcc----------cccceeEEEeCCCCC
Confidence 863221 123345677776643
No 284
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=92.90 E-value=0.35 Score=44.78 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=47.4
Q ss_pred CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~ 199 (285)
...+|+|.|+|..+..+...-.+|-+++.+.+.+-.++.++. +.|+.+.||+.+-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence 689999999999999998865679999999999988888875 4588899997664
No 285
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.64 Score=43.38 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHhhc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~----------~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
+-.++|||+|.|.++.-+++. ..++.-||.|++..+.=+++++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 457999999999998877652 45899999999999988888864
No 286
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.69 Score=41.59 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC
Q 023240 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186 (285)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~ 186 (285)
.-+.++..+++.. -..++..|||.-+|+|....+....+...+|+|++++.++.+.+++...
T Consensus 206 ~~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 206 QKPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3445666777776 5557899999999999999998888999999999999999999998753
No 287
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.66 E-value=0.53 Score=41.76 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHhhc
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~----------~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
+-+|+|+|+|+|.++.-+++. ..+++-||.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999888763 24899999999999998888765
No 288
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.47 E-value=0.27 Score=44.25 Aligned_cols=106 Identities=11% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCccccCCcccCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcCC--
Q 023240 114 FPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-- 187 (285)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~~-- 187 (285)
.+...+.|.|.+++-.+.++.-...- -.|+.|+=+| ----.+++++-. ..+|..||+++..+....+-.+..+
T Consensus 123 ~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~ 201 (354)
T COG1568 123 EPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN 201 (354)
T ss_pred CcchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc
Confidence 45556777788887766554433221 2467899998 333344444433 4689999999999999888877654
Q ss_pred CeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCCCCc
Q 023240 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (285)
Q Consensus 188 ~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~ 230 (285)
|++.+.-|..+.-.. .-...||+.+.+||+.+.
T Consensus 202 ~ie~~~~Dlr~plpe----------~~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 202 NIEAFVFDLRNPLPE----------DLKRKFDVFITDPPETIK 234 (354)
T ss_pred chhheeehhcccChH----------HHHhhCCeeecCchhhHH
Confidence 799999998774322 123679999999998754
No 289
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.20 E-value=0.49 Score=44.74 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=60.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCCHHHHHHHHHHhhcCC----CeEEEEcccccccchhhhhhHHhhhcC
Q 023240 142 GDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~~~~v~~a~~~~~~~~----~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+-+|||.=+|+|.=++..+.. + .+|++-|+|+++++..++|++.++ .+++.+.|+..+-. ..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-----------~~ 118 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-----------SR 118 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----------HS
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----------hc
Confidence 458999999999999888876 2 589999999999999999988763 47888999987632 24
Q ss_pred CCCceEEEEcCCCCCcHHHHHH
Q 023240 215 SSGFAKVVANIPFNISTDVIKQ 236 (285)
Q Consensus 215 ~~~~D~Vv~n~P~~~~~~i~~~ 236 (285)
...||+|=.+ ||.-+.+++..
T Consensus 119 ~~~fD~IDlD-PfGSp~pflds 139 (377)
T PF02005_consen 119 QERFDVIDLD-PFGSPAPFLDS 139 (377)
T ss_dssp TT-EEEEEE---SS--HHHHHH
T ss_pred cccCCEEEeC-CCCCccHhHHH
Confidence 5778988775 57777777763
No 290
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.16 E-value=0.65 Score=41.15 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=63.9
Q ss_pred EEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 146 LDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
|...||+-.++..+.+..-++.+.|+.+.=....++++....++++..+|.....-+.. +++..--.|+.+|
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L--------PP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL--------PPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC--------CCCCcceEEEeCC
Confidence 99999999999999988889999999999999999999866699999999865432110 3344457899999
Q ss_pred CCCCcH
Q 023240 226 PFNIST 231 (285)
Q Consensus 226 P~~~~~ 231 (285)
||....
T Consensus 165 PfE~~~ 170 (279)
T COG2961 165 PFELKD 170 (279)
T ss_pred Cccccc
Confidence 998765
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.01 E-value=0.14 Score=39.49 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~ 172 (285)
+...-.|||||.|-+.-.|...|..=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 35579999999999999999989998999954
No 292
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.82 E-value=1.5 Score=38.24 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=54.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|++.|. ++..+++.|.+|+.++.+++..+.....+... +++..+.+|+.+..-....++-+. ...+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVT--AELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46789999975443 33445556899999999988877776665543 367788889877543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 293
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.69 E-value=1.5 Score=38.68 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+++.++.+.+.+... .++.++.+|+.+..-....++.+ ...
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~---~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL---KNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH---Hhh
Confidence 46788888875443 44455666899999999988777766655432 36888999998764333223322 223
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5689988874
No 294
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.52 E-value=1.6 Score=38.00 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=52.7
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++++||=.|++ |.++. .+++.|.+|+.++.+++-++.+.+.+... +++.++.+|+.+..-....++.+. ...
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~ 82 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY 82 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 46788888864 44443 34455889999999988776666555443 378899999987542222222221 123
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.+|.|.-
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 56799998743
No 295
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.50 E-value=0.73 Score=35.23 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHh---C-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 150 cG~G~~t~~la~~---~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
||.|.++..+++. + .+|+.+|.+++.++.++.. .+.++.||+.+.... +. ..-...+.++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l-------~~-a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVL-------ER-AGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHH-------HH-TTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHH-------hh-cCccccCEEEEcc
Confidence 6777888777664 4 4899999999999888866 478999999886421 11 2334567777654
Q ss_pred C
Q 023240 226 P 226 (285)
Q Consensus 226 P 226 (285)
+
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 296
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.49 E-value=0.57 Score=42.18 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCEEEEEcCcccH--HHHHH--HHh-------CCEEEEEeCCHHHHHHHHH
Q 023240 142 GDIVLEIGPGTGS--LTNVL--LNA-------GATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 142 ~~~VLDiGcG~G~--~t~~l--a~~-------~~~V~giD~~~~~v~~a~~ 181 (285)
.-+|+-+||+||. ++++| .+. ..+|+|.|+|..+++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 5689999999997 44444 332 2489999999999999984
No 297
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.47 E-value=1.6 Score=38.24 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=50.8
Q ss_pred EEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
++|=.|++.|. ++..+++.|++|+.++.+++.++.+.+.+...+++.++..|+.+..-....++-+. ...+..|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCCE
Confidence 46666754332 33444556899999999988887777666544578888999877542222222221 22356899
Q ss_pred EEEcC
Q 023240 221 VVANI 225 (285)
Q Consensus 221 Vv~n~ 225 (285)
+|.|.
T Consensus 80 li~na 84 (259)
T PRK08340 80 LVWNA 84 (259)
T ss_pred EEECC
Confidence 98874
No 298
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.43 E-value=2 Score=37.42 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++.++|=.|++ |.++..++ +.|.+|++++.+++..+...+..... ++.++.+|+.+..-....++.+. ...+
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 85 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERFG 85 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 67899988865 55555544 34889999999987766655444322 56888999887543222222221 1224
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
.+|.||.+..
T Consensus 86 ~~d~vi~~ag 95 (264)
T PRK12829 86 GLDVLVNNAG 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899988643
No 299
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.28 E-value=1.8 Score=37.77 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=53.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++++|=.|++.|. ++..+++.|++|+.++.+++..+...+.+.. ..++.++..|+.+..-....++-+. ..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--EA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 46788988865432 3344555689999999998888777666653 2368888999877543222222221 22
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|.+|.|.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 35689999874
No 300
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=91.26 E-value=0.17 Score=45.61 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=43.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccch
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (285)
.+..++|+|||.|-++..- -.+.++|.|++...+..++.. +...+..+|++++|+.
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~ 100 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFR 100 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCC
Confidence 3778999999999877431 245799999999888888754 2237899999999854
No 301
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.19 E-value=1.9 Score=37.81 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=53.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.|. ++..+++.|.+|++++.+++..+.+...+...+++.++..|+.+..-....++.+. ..+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence 35678888865432 34445556899999999988777666555333478899999887543333333332 2356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.+|.+..
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 799988743
No 302
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.10 E-value=1.9 Score=37.02 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+.+||=.| |+|.++..+++ .|.+|++++.++.....+.+.+.....+.++.+|+.+.......++-+. ...+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIV--AAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 357899888 46666655544 4789999999987776665555433568889999876432111111111 1224
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
.+|.||.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 678888763
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.06 E-value=1.8 Score=40.58 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=39.7
Q ss_pred HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~ 182 (285)
....+.++.+||.+|||. |..+..+|+. +. +|++++.+++..+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 344566788999999988 8888888887 65 699999999999998875
No 304
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.92 E-value=2.1 Score=37.17 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+++||=.| |+|.++..+++ .|.+|++++.+++.++.+...+... .++.++.+|+.+..-.....+.+. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence 467888888 55555555543 4789999999988877766655432 478889999876432211111111 223
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 56799888743
No 305
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.88 E-value=2.3 Score=39.25 Aligned_cols=51 Identities=27% Similarity=0.433 Sum_probs=42.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCc-ccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHH
Q 023240 131 DQLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~ 181 (285)
-........+.+.+||=+|+| +|-++...|+. | .+|+.+|.++..++.|++
T Consensus 159 ~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 159 VHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 345556667789999999999 57777777776 5 589999999999999998
No 306
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.88 E-value=0.34 Score=45.61 Aligned_cols=112 Identities=13% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHhh----------c-CCCeEE
Q 023240 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA----------S-IDQLKV 191 (285)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~~----------~-~~~v~~ 191 (285)
+.++-+..+++.+++++++.-.|+|+|.|......+.. + ..=+|+|+....-+.|..+.+ . .+.++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 34566788899999999999999999999998887765 3 366788876554444433322 1 136889
Q ss_pred EEcccccccchhhhhhHHhhhcCCCCceEEEEc-CCCCC-----cHHHHHHhccCCCcee
Q 023240 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNI-----STDVIKQLLPMGDIFS 245 (285)
Q Consensus 192 ~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n-~P~~~-----~~~i~~~l~~~g~~~~ 245 (285)
+++++....... ......++|++| .-|.. ...++.++..+.++++
T Consensus 256 i~gsf~~~~~v~---------eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 256 IHGSFLDPKRVT---------EIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred cccccCCHHHHH---------HHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEec
Confidence 999998764322 123456777776 33321 1255556655555543
No 307
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.75 E-value=2.3 Score=37.05 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+++||=.|+ +|.++..+++ .|.+|+.++.+++..+.+...++.. .++.++.+|+.+.......++-+. ...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 4678998884 5665555544 5889999999988777666666543 257888889877543222222221 233
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.+|.|..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 56799988753
No 308
>PLN02253 xanthoxin dehydrogenase
Probab=90.53 E-value=2.3 Score=37.70 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|+ +|.++..+ ++.|.+|+.++.+++..+.....+....++.++.+|+.+..-....++.+. ...+
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g 93 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG 93 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 3668888884 45555444 445889999999887766655555433468899999987643333333222 1235
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.+|.|.
T Consensus 94 ~id~li~~A 102 (280)
T PLN02253 94 TLDIMVNNA 102 (280)
T ss_pred CCCEEEECC
Confidence 689998874
No 309
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.45 E-value=2.2 Score=39.42 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++.|. ++..+++.|++|+.++.+++.++...+.+...+ ++.++..|+.+..-.....+.+. ...+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence 45788888864333 334455568999999999988877766665433 67788888876543222222222 1236
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899998843
No 310
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.39 E-value=2.7 Score=36.59 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ +|.++.. +++.|++|+.++.+++.++.+...++.. .++.++.+|+.+..-....++-+. ...
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARID--AEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 4778888885 4444444 4445899999999987766655555433 368889999877532222222211 223
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.+|.|.-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 56799998744
No 311
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.32 E-value=2.4 Score=36.94 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=50.5
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
+++|=.|++.|. ++..+++.|.+|+.++.++...+.+...+... +++.++.+|..+.......++.+. ...+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQID--EKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCCc
Confidence 567777775442 33344556889999999987776666555433 478889999876443222222221 123567
Q ss_pred eEEEEcC
Q 023240 219 AKVVANI 225 (285)
Q Consensus 219 D~Vv~n~ 225 (285)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988874
No 312
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.28 E-value=3.4 Score=35.56 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+.+++|=.|+ +|.++..++ +.|.+|+.++.+++-.+...+..+.. .++.++.+|+.+.......++.+. ...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4567888884 555555444 45889999999987666655554432 378889999987643222222221 123
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.+|.|.-
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 45799988753
No 313
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.20 E-value=2.6 Score=36.87 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=50.8
Q ss_pred CEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
+++|=.|++ |.++. .+++.|.+|+.++.+++.++.+..... ..++.++.+|+.+..-....++-+.. ...+..
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~~i 78 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA-ATGGRL 78 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH-HcCCCC
Confidence 357777754 44444 445558899999999888777666543 24788999999775422222211111 114568
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|.||.|.-
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 99998753
No 314
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.18 E-value=2.6 Score=36.66 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=51.9
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++++||=.|+ +|.++. .+++.|.+|+.++.+++..+.+...+... .++.++..|+.+.......++.+. ..-
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALAL--ERF 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHH--HHc
Confidence 4568887775 444444 44556899999999988776666555432 368889999876543222222221 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|.+|.|.
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 5679998874
No 315
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.17 E-value=2.4 Score=37.02 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=49.7
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
++||=.|+ +|.++.. +++.|.+|+.++.+++.++...+.+...+++.++.+|+.+..-....++.+. ...+..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~g~i 79 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFI--AAHGLP 79 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH--HhCCCC
Confidence 46777775 4444444 4455889999999988777665554432378889999987542222222221 223557
Q ss_pred eEEEEcC
Q 023240 219 AKVVANI 225 (285)
Q Consensus 219 D~Vv~n~ 225 (285)
|++|.|.
T Consensus 80 d~lv~~a 86 (257)
T PRK07024 80 DVVIANA 86 (257)
T ss_pred CEEEECC
Confidence 9999873
No 316
>PRK06194 hypothetical protein; Provisional
Probab=90.04 E-value=2.7 Score=37.30 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=51.5
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+++||=.|. +|.++..+ ++.|.+|+.+|.+.+..+.....+... .++.++.+|+.+.......++.+. ...
T Consensus 5 ~~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~ 81 (287)
T PRK06194 5 AGKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERF 81 (287)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 3567887774 45444444 445889999999987766665554432 367889999887542222222221 123
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|+||.|.-
T Consensus 82 g~id~vi~~Ag 92 (287)
T PRK06194 82 GAVHLLFNNAG 92 (287)
T ss_pred CCCCEEEECCC
Confidence 56799998754
No 317
>PRK07478 short chain dehydrogenase; Provisional
Probab=89.95 E-value=3.1 Score=36.20 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=53.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|++.|. ++..+++.|.+|+.++.+++..+.+...+... +++.++.+|+.+..-....++-+. ...+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAV--ERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 35678877765432 33445556899999999988777766665543 368888899877543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|..
T Consensus 83 ~id~li~~ag 92 (254)
T PRK07478 83 GLDIAFNNAG 92 (254)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 318
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=89.87 E-value=0.77 Score=40.77 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=48.5
Q ss_pred EEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 146 LDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
|...+|+-.++..+.+..-+.+..|+.+.-.+..++++....++++++.|..+.-.+ ++ ++...--+|+.+|
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~a-----ll---PP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKA-----LL---PPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHH-----H----S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhh-----hC---CCCCCCeEEEECC
Confidence 889999999999998888899999999999999999988766999999998774211 11 3344457899999
Q ss_pred CCCCcHH
Q 023240 226 PFNISTD 232 (285)
Q Consensus 226 P~~~~~~ 232 (285)
||....+
T Consensus 134 pYE~~~d 140 (245)
T PF04378_consen 134 PYEQKDD 140 (245)
T ss_dssp ---STTH
T ss_pred CCCCchH
Confidence 9987764
No 319
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.80 E-value=2.9 Score=36.04 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++ |.++. .+++.|.+|++++.++.-.+.+...+....++.++.+|+.+..-....++-+. ...+
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAAL--ERFG 80 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence 35678888754 34443 44555889999999987776666555432368889999887643322222111 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
.+|.||.+..
T Consensus 81 ~~d~vi~~ag 90 (251)
T PRK07231 81 SVDILVNNAG 90 (251)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 320
>PRK05876 short chain dehydrogenase; Provisional
Probab=89.75 E-value=3 Score=37.20 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|++.|. ++..+++.|.+|+.++.+++.++.+.+.+...+ ++.++..|+.+..-....++-+. ...+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence 46778877765433 333444558899999999887776665554333 67888889877542222222221 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6799998754
No 321
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.52 E-value=1.3 Score=39.35 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKD 172 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~ 172 (285)
.+.+|||+|+|+|-.++.+|.. +++|.--|.-
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~ 118 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLP 118 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCch
Confidence 3568999999999888888875 6777776654
No 322
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=89.51 E-value=3 Score=34.66 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240 123 YMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (285)
Q Consensus 123 ~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~-~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~ 199 (285)
|+-+++.++.+++.+.- .++.+|+=|||=+-+..+.-.. .+.+++-.|+|....... ++ .++.-|..+.
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p 76 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEP 76 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCCh
Confidence 55666777777666654 3467899999888777665411 256899999996554321 13 4555555432
Q ss_pred cchhhhhhHHhhhcCCCCceEEEEcCCCCCcHHH
Q 023240 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (285)
Q Consensus 200 ~~~~~~~d~~~~~~~~~~~D~Vv~n~P~~~~~~i 233 (285)
. ++.+ .-.+.+|+||.+||| ...+.
T Consensus 77 ~------~~~~--~l~~~~d~vv~DPPF-l~~ec 101 (162)
T PF10237_consen 77 E------ELPE--ELKGKFDVVVIDPPF-LSEEC 101 (162)
T ss_pred h------hhhh--hcCCCceEEEECCCC-CCHHH
Confidence 1 1111 124689999999999 44433
No 323
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.50 E-value=3.4 Score=37.64 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.+++++=.|++.|. ++..+++.|++|+.+..+++..+.+.+.+... .++.++..|+.+..-....++.+. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence 46788888865443 34445556899999999987766665554322 268889999887653333333332 23
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|++|.|.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 45689999874
No 324
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.50 E-value=3.2 Score=37.39 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+++||=.|++. .++.. +++.|.+|+.++.+++.++.+.+.+... +.+.++.+|+.+.......++.+. ...
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~ 115 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRI 115 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 356888888643 44433 4455889999999988777666555432 367788899887543222222221 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 5679999874
No 325
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.43 E-value=2 Score=40.74 Aligned_cols=95 Identities=20% Similarity=0.338 Sum_probs=66.6
Q ss_pred CEEEEEcCcc-cHHHHH-HHHhC-CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 143 DIVLEIGPGT-GSLTNV-LLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 143 ~~VLDiGcG~-G~~t~~-la~~~-~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
.+||=||||. |..... ||+.+ .+|+..|.+.+.++.+..... ++++.+.-|+.+.+- ...++ ..+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~a---l~~li------~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDA---LVALI------KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHH---HHHHH------hcCC
Confidence 4689999952 333332 24445 799999999999888877653 378899999988742 12222 3359
Q ss_pred EEEEcCCCCCcHHHHHHhccCCCceeeeE
Q 023240 220 KVVANIPFNISTDVIKQLLPMGDIFSEVV 248 (285)
Q Consensus 220 ~Vv~n~P~~~~~~i~~~l~~~g~~~~~~~ 248 (285)
+||.-.|+.....+++...+.|-....+.
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 99998888888888888877776664443
No 326
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.42 E-value=1.9 Score=33.71 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=49.5
Q ss_pred CCEEEEEcCcccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 142 GDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 142 ~~~VLDiGcG~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
..+|.|+|-|-=. .+..|++.|..|+++|+++. +.. ..++++..|+.+-... --...|+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~-----------iY~~A~l 73 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP--EGLRFVVDDITNPNIS-----------IYEGADL 73 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc--ccceEEEccCCCccHH-----------HhhCccc
Confidence 3489999876543 45677778999999999976 221 3688999999885532 1133577
Q ss_pred EEEc-CCCCCcHHHHH
Q 023240 221 VVAN-IPFNISTDVIK 235 (285)
Q Consensus 221 Vv~n-~P~~~~~~i~~ 235 (285)
|.+= ||-...+.+++
T Consensus 74 IYSiRpppEl~~~ild 89 (129)
T COG1255 74 IYSIRPPPELQSAILD 89 (129)
T ss_pred eeecCCCHHHHHHHHH
Confidence 8774 55444444443
No 327
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.40 E-value=3.2 Score=38.27 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=53.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++.|. ++..+++.|++|+.++.+++.++...+.+... .++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence 45678888854333 23344556899999999988877766665543 378888999877543222222222 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 328
>PRK08862 short chain dehydrogenase; Provisional
Probab=89.38 E-value=3.3 Score=35.82 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++.+|=.|++.|. ++..+++.|.+|+.++.+++.++.+.+.+...+ ++..+..|..+..-....++-+. ..-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIE--QQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46788888888766 455666679999999999988877766654433 56667777765432222222221 1224
Q ss_pred -CceEEEEcC
Q 023240 217 -GFAKVVANI 225 (285)
Q Consensus 217 -~~D~Vv~n~ 225 (285)
..|++|.|.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 689999885
No 329
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.33 E-value=2.9 Score=36.73 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhC-CEEEEEeCCHHH-HHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhh
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAG-ATVLAIEKDQHM-VGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~-~~V~giD~~~~~-v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.+++||=.|++ |.++..+ ++.+ .+|+.++.+++- ++.+.+.+...+ +++++.+|+.+..-. .++++..
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~---~~~~~~~ 82 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSH---PKVIDAA 82 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHH---HHHHHHH
Confidence 56789999974 4444444 4444 799999998764 555544444332 688999998774422 2222221
Q ss_pred cCCCCceEEEEcCC
Q 023240 213 KSSSGFAKVVANIP 226 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P 226 (285)
...+..|++|.|..
T Consensus 83 ~~~g~id~li~~ag 96 (253)
T PRK07904 83 FAGGDVDVAIVAFG 96 (253)
T ss_pred HhcCCCCEEEEeee
Confidence 22357898887643
No 330
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.31 E-value=2.7 Score=36.99 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcc----cH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++.+|=.|+++ |. ++..+++.|++|+.++.+++..+.+++..+..+.+.++..|+.+..-....++.+.+ ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE--EW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH--Hc
Confidence 467899999754 33 344455568999999988654333333222223456778888776543334444322 23
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 5789999884
No 331
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.28 E-value=3.5 Score=35.96 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=54.1
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.| |+|.++..+++ .|.+|+.++.+.+-.+.+...+... .++.++.+|+.+..-....++-+. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~--~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETL--ERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence 467899888 55666665554 4889999999988777666655433 367889999987543222222221 122
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.||.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 46799988754
No 332
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.25 E-value=3.3 Score=36.25 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=52.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+++.++.+..... .++.++.+|+.+.......++-+. ...+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 80 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFGK 80 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence 46788888864333 333455568999999999887766655432 367888999877543332222221 23356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|++|.|..
T Consensus 81 id~li~~ag 89 (263)
T PRK06200 81 LDCFVGNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 899988754
No 333
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.24 E-value=3.7 Score=35.35 Aligned_cols=83 Identities=8% Similarity=0.152 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ +|.++..+ ++.|.+|+.++.+++.++.+...+... .++.++..|+.+........+-+. ...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIA--EDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence 4678898885 34444444 445889999999987776666555433 367888999876532222122111 122
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.||.|..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56799998754
No 334
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.23 E-value=3.4 Score=36.29 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|++.|. ++..+++.|++|+.++.+++.++.+...+...+ ++.++.+|+.+..-....++.+. ...+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 46788888876543 344556668999999999887777666665433 68889999877643332333222 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|..
T Consensus 87 ~id~li~~ag 96 (265)
T PRK07097 87 VIDILVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 335
>PRK06138 short chain dehydrogenase; Provisional
Probab=89.18 E-value=3.7 Score=35.45 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|+. |.++.. +++.|++|+.++.+.+.............++.++.+|+.+.......++.+. ...+
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA--ARWG 80 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 35688888874 444444 4445889999999987766655555422468889999887543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.||.+..
T Consensus 81 ~id~vi~~ag 90 (252)
T PRK06138 81 RLDVLVNNAG 90 (252)
T ss_pred CCCEEEECCC
Confidence 6899988744
No 336
>PRK05872 short chain dehydrogenase; Provisional
Probab=89.14 E-value=3.3 Score=37.24 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+++.++...+.+.....+..+..|+.+..-.....+-+. ...+.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAV--ERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence 46788988854432 33344556899999999988777666555432345556688776532222222111 22356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|++|.|.-
T Consensus 86 id~vI~nAG 94 (296)
T PRK05872 86 IDVVVANAG 94 (296)
T ss_pred CCEEEECCC
Confidence 899998854
No 337
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.11 E-value=3.7 Score=35.88 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.|+. |.++..++ +.|.+|+.++.++...+.+++......++.++.+|+.+..-....++.+. ...+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 81 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG 81 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 45788888864 55555444 45889999999876444443332222467888999877543333333322 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|.-
T Consensus 82 ~id~vi~~ag 91 (263)
T PRK08226 82 RIDILVNNAG 91 (263)
T ss_pred CCCEEEECCC
Confidence 6788888643
No 338
>PRK07035 short chain dehydrogenase; Provisional
Probab=88.86 E-value=3.7 Score=35.63 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.|++.|. ++..+++.|.+|+.++.++...+...+.+... .++.++..|..+..-....++.+. ...+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIR--ERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 35678888866553 33445556889999999987777666655433 357778888876542222222211 1234
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6799887653
No 339
>PRK08643 acetoin reductase; Validated
Probab=88.86 E-value=3.7 Score=35.68 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++|=.|+. |.++..+ ++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+. ...+
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 78 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFG 78 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 3467767744 4444444 445889999999988777666655433 367888999887653333333322 1235
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.+|.|.
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 689998875
No 340
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.81 E-value=3.9 Score=34.99 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=51.5
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.|++ |.++..++ +.|.+|++++.+++..+.+.+.....+++.++.+|+.+..-....++-+. ...+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAA--KVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence 36789999975 44444443 45889999999988777665555444578889999887542222111111 1124
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5688877653
No 341
>PRK08589 short chain dehydrogenase; Validated
Probab=88.74 E-value=4.2 Score=36.00 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+ +..+...+.+... +++.++..|+.+..-....++.+. ...+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIK--EQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH--HHcC
Confidence 46688888865443 344455568999999999 4444444444332 368888999877543222222222 2335
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6899998753
No 342
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.70 E-value=3.2 Score=36.94 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++.+|=.|++ .|. ++..+++.|++|+.++.++...+.+++..+..+....+..|+.+..-....++.+. ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 46788888875 444 45566667999999988764433333332222333467888877543333333322 233
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6789999874
No 343
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=88.69 E-value=4 Score=36.06 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++.|. ++..+++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+..-....++.+. ..-+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQIL--EDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46778888865433 33344556889999999987776665555433 368888999877543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6899998743
No 344
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=88.66 E-value=0.34 Score=45.58 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhh
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d 207 (285)
.++..++|+|||.|.....++.. ++.++|++.++.-+..+....... .+..++.+|+.+.++++..+|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence 35668999999999999999987 589999999988887776654432 245558899999887654443
No 345
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.59 E-value=3.9 Score=35.12 Aligned_cols=82 Identities=11% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+.++|=.|+ +|.++..+++ .|.+|+.++.++...+.....+...+ ++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 567888884 6676665544 48899999999876655544444333 68888999877542222222111 1234
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.||.+..
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 6799988743
No 346
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.50 E-value=1.3 Score=35.84 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=37.7
Q ss_pred EEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 165 ~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
+|+|.|+.+++++.++++++.. +++++++.+=.++.-. .+.+.+|.++.|+-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCc
Confidence 6999999999999999999876 3799998876665421 122579999999544
No 347
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.47 E-value=3.9 Score=35.26 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.| |+|.++..++ +.|.+|+.++.++...+.....+... +++.++..|..+..-....+..+. ...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATV--SAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 456788888 5556555554 45889999999987665555554332 367788889877543222222221 122
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|+||.|..
T Consensus 82 ~~id~vi~~ag 92 (250)
T PRK07774 82 GGIDYLVNNAA 92 (250)
T ss_pred CCCCEEEECCC
Confidence 46899998754
No 348
>PRK08303 short chain dehydrogenase; Provisional
Probab=88.45 E-value=3.4 Score=37.63 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=50.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH----------HHHHHHHHHhhcCC-CeEEEEcccccccchhhhh
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~----------~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~ 206 (285)
.++++|=.|++.|. ++..+++.|++|+.++.+. +.++.+.+.++..+ ++.++..|+.+..-....+
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 86 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV 86 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 46789999976553 3444555689999999873 33444444444333 5778889988754333333
Q ss_pred hHHhhhcCCCCceEEEEcC
Q 023240 207 SLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n~ 225 (285)
+.+. ...+..|++|.|.
T Consensus 87 ~~~~--~~~g~iDilVnnA 103 (305)
T PRK08303 87 ERID--REQGRLDILVNDI 103 (305)
T ss_pred HHHH--HHcCCccEEEECC
Confidence 3322 2235689999886
No 349
>PRK09242 tropinone reductase; Provisional
Probab=88.41 E-value=3.9 Score=35.63 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=53.7
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++++|=.|++.| . ++..+++.|.+|+.++.+++..+.....+... .++.++.+|+.+..-....++.+. ..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence 4678888887443 2 33344555899999999988777666665432 367888999877542222222221 23
Q ss_pred CCCceEEEEcCCC
Q 023240 215 SSGFAKVVANIPF 227 (285)
Q Consensus 215 ~~~~D~Vv~n~P~ 227 (285)
.+..|.+|.+.-.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 3568999887643
No 350
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.32 E-value=5.8 Score=34.46 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccH--HHHHHH--Hh--CCEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEccc
Q 023240 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLL--NA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (285)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~--~t~~la--~~--~~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~ 196 (285)
++...+++-.+..-...+.++|+.|+.|. .++.|+ .+ |++++.|-.+++.....++.+...+ -++|+.||.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 35566666666655567899999776543 344443 32 7899999999888777777776443 468888885
Q ss_pred c
Q 023240 197 V 197 (285)
Q Consensus 197 ~ 197 (285)
.
T Consensus 106 ~ 106 (218)
T PF07279_consen 106 P 106 (218)
T ss_pred H
Confidence 3
No 351
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.31 E-value=4 Score=35.75 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++++|=.|++.|. ++..+++.|++|+.++.+++.++.+.+.+... .++..+..|+.+..-.....+.+. ..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE--AR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH--Hh
Confidence 46788989965443 33445556899999999988777665554332 257788888877543222222221 12
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
.+..|.+|.|.-
T Consensus 85 ~g~id~li~~Ag 96 (265)
T PRK07062 85 FGGVDMLVNNAG 96 (265)
T ss_pred cCCCCEEEECCC
Confidence 356899988753
No 352
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.29 E-value=4.2 Score=35.16 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++||=.| |+|.++..+++ .|.+|+.++.+++..+.+...++.. .++.++.+|+.+..-....++.+. ...+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV--ETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 46777666 45676666655 4889999999988776665555433 478889999876543222222222 1224
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|+||.|.
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 579988864
No 353
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=88.18 E-value=4.8 Score=35.03 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++.|. ++..+++.|.+|+.++.++.. ..+...+.. ..++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAV--EAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence 45688888864332 334445568899999998643 333333332 2367788889877532222222221 1235
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.+|.|.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 689999875
No 354
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.17 E-value=4.6 Score=34.72 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+++||=.|+ +|.++..+ ++.|.+|++++.++.....+...+... .++.++.+|+.+..-....++-+. ...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV--EDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 3568887775 56655554 445889999999977665555544433 368889999877532222222111 123
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+.+|.||.+..
T Consensus 82 ~~~d~vi~~ag 92 (251)
T PRK12826 82 GRLDILVANAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 46799888754
No 355
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=87.97 E-value=5.6 Score=34.23 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++|=.|+ +|.++..++ +.|.+|+.++.+.+....+...+... .++.++.+|+.+.......++.+. ...+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE--QALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 567888885 455554444 45789999999987776666555433 378899999877543222222221 1234
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.+..
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 5798888764
No 356
>PRK07814 short chain dehydrogenase; Provisional
Probab=87.84 E-value=4.7 Score=35.40 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ +|.++..++ +.|.+|+.++.+++..+.+...+... .++.++..|..+.......++.+. ...
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4678888884 555555544 45889999999987766655554432 368888899877543222222221 122
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|.||.+.
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 5689998864
No 357
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.72 E-value=4.9 Score=34.89 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ +|.++..+ ++.|.+|+.++.+++..+.+.+.+...+ ++.++.+|+.+..-....++-+. ...
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF 82 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 3567886665 45555444 4458899999999977766666654433 67888999887653222222221 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|.||.+.
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 5678888864
No 358
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.72 E-value=2.6 Score=42.42 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred EEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+|+= ||.|..+..+++ .+.+++.+|.|++.++.+++. ...++.||+.+... +++ ..-...|
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~-------L~~-agi~~A~ 466 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLEL-------LRA-AGAEKAE 466 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHH-------HHh-cCCccCC
Confidence 4444 455666665554 378999999999999988753 57899999988643 221 2345667
Q ss_pred EEEEcCCC
Q 023240 220 KVVANIPF 227 (285)
Q Consensus 220 ~Vv~n~P~ 227 (285)
.++...+-
T Consensus 467 ~vv~~~~d 474 (601)
T PRK03659 467 AIVITCNE 474 (601)
T ss_pred EEEEEeCC
Confidence 77775554
No 359
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.59 E-value=4.4 Score=34.94 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=49.6
Q ss_pred CEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++|=.| |+|.++..+++ .|.+|++++.+++..+.+...+... .++.++.+|+.+..-....+..+. ...+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence 3566666 55666666554 4889999999987766665554332 368889999987542222222221 12345
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|.||.+.
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 78888764
No 360
>PRK07791 short chain dehydrogenase; Provisional
Probab=87.46 E-value=5.1 Score=35.88 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH---------HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhh
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS 207 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~---------~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d 207 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+. +.++.+.+.+... .++.++..|+.+..-....++
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 56788988976554 3444556688999988764 4444444444332 367788889877543222222
Q ss_pred HHhhhcCCCCceEEEEcCC
Q 023240 208 LFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 208 ~~~~~~~~~~~D~Vv~n~P 226 (285)
.+. ...+..|++|.|.-
T Consensus 85 ~~~--~~~g~id~lv~nAG 101 (286)
T PRK07791 85 AAV--ETFGGLDVLVNNAG 101 (286)
T ss_pred HHH--HhcCCCCEEEECCC
Confidence 221 23367899998743
No 361
>PRK05650 short chain dehydrogenase; Provisional
Probab=87.44 E-value=4.8 Score=35.45 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=49.1
Q ss_pred EEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
+||=.|+ +|.++.. +++.|.+|+.++.+.+..+.+...+... .++.++.+|+.+..-....++.+. ...+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence 4666664 4444444 4455889999999987766665554433 478888999877543222222221 123568
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|.+|.|..
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 99998743
No 362
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.25 E-value=4.3 Score=35.43 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+.. +.+.+..+.. .++.++..|+.+..-....++.+. ...+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAV--EVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHH--HHcC
Confidence 46789988865544 33445556899999887642 2222233222 368888999887643332222221 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 83 ~iD~lv~~ag 92 (251)
T PRK12481 83 HIDILINNAG 92 (251)
T ss_pred CCCEEEECCC
Confidence 6899998743
No 363
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=87.16 E-value=5.9 Score=35.99 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++++||=.|+. |.++.. +++.|.+|+.++.+++..+.+.+.+... +++.++..|+.+..-....++.+. ...
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALG 81 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhC
Confidence 46678888854 444444 4445889999999987766665555322 368888899877543222222221 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 4689999874
No 364
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.13 E-value=5.3 Score=35.06 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=50.0
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.| . ++..+++.|++|+.++.+++..+.+.+.. ..++.++.+|+.+..-....++.+. ...+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g~ 80 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVV--ARFGR 80 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 4678888885433 2 33444556899999999987655544443 2368888999987542222222221 22356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.+|.|..
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 799988743
No 365
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.10 E-value=6.1 Score=34.06 Aligned_cols=94 Identities=26% Similarity=0.382 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 140 ~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.++.+||-.|+|. |..+..+++. |.+|++++.+++..+.++..- .-.++ |..+..... .+. ......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~--~~~~~~~~~---~~~--~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG----ADHVI--DYKEEDLEE---ELR--LTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC----Cceec--cCCcCCHHH---HHH--HhcCCC
Confidence 5788999999985 6666666665 789999999988887775431 11111 111111110 000 023456
Q ss_pred ceEEEEcCCC-CCcHHHHHHhccCCCce
Q 023240 218 FAKVVANIPF-NISTDVIKQLLPMGDIF 244 (285)
Q Consensus 218 ~D~Vv~n~P~-~~~~~i~~~l~~~g~~~ 244 (285)
+|+++.+.+- ......++.+.+.|.++
T Consensus 202 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 202 ADVVIDAVGGPETLAQALRLLRPGGRIV 229 (271)
T ss_pred CCEEEECCCCHHHHHHHHHhcccCCEEE
Confidence 8999987654 34444555555544433
No 366
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=86.92 E-value=6.4 Score=34.32 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++.|. ++..+++.|++|+.++.++ ..+.+.+.... .+++.++.+|+.+..-....++-+. ...+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEAL--EEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 46789988875543 3344555689999998883 33334433332 2478889999887543322222221 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|..
T Consensus 91 ~id~li~~ag 100 (258)
T PRK06935 91 KIDILVNNAG 100 (258)
T ss_pred CCCEEEECCC
Confidence 6799988753
No 367
>PLN02780 ketoreductase/ oxidoreductase
Probab=86.90 E-value=5.4 Score=36.60 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.+..+|=.|++.|. ++..+++.|.+|+.++++++.++...+.+... .++..+..|+.+ ...+...++.+. ..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~-~~ 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKET-IE 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHH-hc
Confidence 36789988975553 45556667899999999998887776665432 256677778763 111212222221 22
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
....|++|.|.
T Consensus 130 ~~didilVnnA 140 (320)
T PLN02780 130 GLDVGVLINNV 140 (320)
T ss_pred CCCccEEEEec
Confidence 22356788774
No 368
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.87 E-value=5.2 Score=35.43 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|++ .|. ++..+++.|++|+.++.+....+.+++.....+.+.++..|+.+..-....++.+. ..-
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence 46788888975 443 45566667899998888743323333222222456678888877543333333332 223
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|.-
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 56899998853
No 369
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=86.79 E-value=5.9 Score=34.37 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.|++ |.++. .+++.|++|+.++.+++....+...+... .++.++..|+.+..-....++.+. ...
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 84 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI 84 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 46688888854 44444 44445889999999987776666555433 367778888877542222222221 233
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+.+|.+|.|..
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 56899998753
No 370
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.75 E-value=5.4 Score=35.56 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++.+|=.|++ .|. ++..+++.|++|+.++++++..+.+++.....+.-..+..|+.+..-....++.+. ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence 46788888964 454 34455666899999998854322222222222211567788877653333333332 234
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|.-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 67899998843
No 371
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.59 E-value=0.52 Score=42.48 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHHh--cC-CCCCEEEEEcCcccHHHHHHHHhC-CEEEEEeCCHHHHH
Q 023240 127 SEINDQLAAAA--AV-QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG 177 (285)
Q Consensus 127 ~~~~~~l~~~l--~~-~~~~~VLDiGcG~G~~t~~la~~~-~~V~giD~~~~~v~ 177 (285)
-+++..+.+.+ +. ..+++|||+|||.|--.+.....+ ..+...|.|.+.++
T Consensus 99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 34555555443 22 268899999999999998887776 68999999887773
No 372
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=86.49 E-value=7.6 Score=33.75 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=51.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++.|. ++..+++.|.+|+.++.+.+..+.+...+... .++.++..|+.+..-.......+. ...+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAL--SKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 46789999955442 23334555889999999888777665554432 367788889877542221111111 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 6799988743
No 373
>PRK06196 oxidoreductase; Provisional
Probab=86.44 E-value=5.7 Score=36.02 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++ |.++..++ +.|.+|+.++.+++..+.+...+. ++.++.+|+.+..-.....+.+. ...+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence 46788888854 55555444 458899999999877665554442 47888999887643222222221 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|..
T Consensus 99 ~iD~li~nAg 108 (315)
T PRK06196 99 RIDILINNAG 108 (315)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 374
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.42 E-value=5.1 Score=35.53 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++||=.|++ |.++..+ ++.|.+|++++.+++.++.+.. ..++++.+|+.+..-....++.+.. ...+.
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~-~~~g~ 76 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE-LSGGR 76 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH-HcCCC
Confidence 4678888864 4444444 4458899999999877665442 2577888898774322222222111 12356
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|++|.|.
T Consensus 77 id~li~~A 84 (277)
T PRK05993 77 LDALFNNG 84 (277)
T ss_pred ccEEEECC
Confidence 89999874
No 375
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.42 E-value=6.9 Score=34.42 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|. +|.++.. ++..|++|+.++.+++-.+.....+... .++.++..|+.+..-....++-+. ...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~--~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA--DEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 4678888885 4554444 4445889999999987766555444432 367788889876432222111111 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 5679998775
No 376
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.39 E-value=4.9 Score=35.12 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=50.1
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.|.+ .|. ++..+++.|.+|+.++.+++..+.+++.. ..++.++..|+.+..-....++.+. ...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV--DEEDLLVECDVASDESIERAFATIK--ERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 46788888865 444 34555666899999988854433333321 1367788889877543333333332 123
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|.-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 67899998753
No 377
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.25 E-value=2.2 Score=40.47 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhh
Q 023240 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (285)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~ 184 (285)
-.+.|++.++++||-|.+|.......+.....+|++||+|+.-+..++-+..
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 4456778889999999988777666666667899999999998888776654
No 378
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.18 E-value=7.1 Score=33.51 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ +|.++..++ +.|.+|+.++.+++......+.++.. .++.++.+|+.+..-....++.+. ..-
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4577887774 556555554 34889999999988776665555432 378899999987543222222221 122
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|.||.+.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 5689988864
No 379
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.17 E-value=5.5 Score=35.04 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGc----G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|+ |.|. ++..+++.|++|+....+....+.+++.....+....+..|+.+..-....++.+. ...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence 4678898896 3444 33444556889988776544333343333322445567888877543333333322 233
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 83 g~iD~lVnnA 92 (261)
T PRK08690 83 DGLDGLVHSI 92 (261)
T ss_pred CCCcEEEECC
Confidence 6789999985
No 380
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.16 E-value=4 Score=40.76 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=50.6
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhc----------CCCeEEEEcccccccch
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHIR 202 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~----------~~~v~~~~gD~~~~~~~ 202 (285)
++...+++||=.|+ +|.++..++ +.|.+|++++++.+........+.. ..++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34446778888885 466665554 4488999999998776655443321 13588999999875311
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
.+. -+..|+||.+.-
T Consensus 154 ---~~a------LggiDiVVn~AG 168 (576)
T PLN03209 154 ---GPA------LGNASVVICCIG 168 (576)
T ss_pred ---HHH------hcCCCEEEEccc
Confidence 111 245788888743
No 381
>PRK06720 hypothetical protein; Provisional
Probab=86.16 E-value=9.2 Score=31.73 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++.+|=.|.+.|. ++..+++.|.+|+.+|.+++..+.+.+.+... +.+.++..|..+..-....++.+. ...+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~--~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITL--NAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 46678888865433 34445566899999999987776655554432 356677888766532222222221 2335
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|..
T Consensus 93 ~iDilVnnAG 102 (169)
T PRK06720 93 RIDMLFQNAG 102 (169)
T ss_pred CCCEEEECCC
Confidence 6899998854
No 382
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.11 E-value=8.8 Score=34.51 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.+.++|=-|+-.|. ++..+|++|.+|+-+-++++.++.+++.++... .+.++..|..+..-.....+.+. ...
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~--~~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK--ERG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH--hcC
Confidence 45677777764443 566777789999999999999998888887532 67899999988764444444332 233
Q ss_pred CCceEEEEcCCCC
Q 023240 216 SGFAKVVANIPFN 228 (285)
Q Consensus 216 ~~~D~Vv~n~P~~ 228 (285)
...|++|-|--|.
T Consensus 83 ~~IdvLVNNAG~g 95 (265)
T COG0300 83 GPIDVLVNNAGFG 95 (265)
T ss_pred CcccEEEECCCcC
Confidence 5789999886554
No 383
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.05 E-value=7.1 Score=33.73 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhh-c
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-K 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~-~ 213 (285)
++++||=.|+ +|.++..++ +.|.+|++++.+.+..+.....+... .++.++.+|+......+ ..++++.. .
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQN-YQQLADTIEE 88 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHH-HHHHHHHHHH
Confidence 5778999994 566655544 44889999999987766655555433 26778888875432211 11111111 1
Q ss_pred CCCCceEEEEcC
Q 023240 214 SSSGFAKVVANI 225 (285)
Q Consensus 214 ~~~~~D~Vv~n~ 225 (285)
..+..|.||.|.
T Consensus 89 ~~~~id~vi~~A 100 (247)
T PRK08945 89 QFGRLDGVLHNA 100 (247)
T ss_pred HhCCCCEEEECC
Confidence 235689998874
No 384
>PRK06182 short chain dehydrogenase; Validated
Probab=85.82 E-value=6.4 Score=34.68 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++||=.|+ +|.++..++ +.|.+|++++.+++.++.... .+++++.+|+.+.......++.+. ...+.
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~--~~~~~ 74 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTII--AEEGR 74 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence 467887885 444555444 458899999999876544322 258888999877543222222221 22356
Q ss_pred ceEEEEcCCC
Q 023240 218 FAKVVANIPF 227 (285)
Q Consensus 218 ~D~Vv~n~P~ 227 (285)
.|.+|.|..+
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999988643
No 385
>PRK06181 short chain dehydrogenase; Provisional
Probab=85.81 E-value=7.2 Score=34.00 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=48.3
Q ss_pred CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.+||=.|+ +|.++..+ ++.|.+|++++.++.-.+.+...+... .++.++.+|+.+..-....++-+. ...+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 35776674 44555444 445889999999987666555554433 368888999877543222222221 12245
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|.||.+.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 78888873
No 386
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.79 E-value=12 Score=33.63 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=35.3
Q ss_pred cCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240 138 AVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 138 ~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~ 181 (285)
.+.++.+||..|+| .|..++.+|+. |.+|++++.+++..+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 45677889988876 47777777776 8899999999998888855
No 387
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.51 E-value=6.5 Score=34.94 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.|++ .|. ++..+++.|++|+.+..++...+.+++..+..+....+..|+.+..-....++.+. ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 45788888964 554 34555666899988876643333333332222445567888877543333333332 233
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 87 g~iD~lv~nA 96 (272)
T PRK08159 87 GKLDFVVHAI 96 (272)
T ss_pred CCCcEEEECC
Confidence 5789999885
No 388
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.48 E-value=8.2 Score=33.65 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++++|=.|++.| ++. .+++.|++|+.++.+++..+.+...+... .++.++..|+.+..- ...+++ .
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~---~~~~~~---~ 78 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEA---REQLAA---E 78 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHH---HHHHHH---H
Confidence 4678888886433 443 34556889999999988777666555432 367888888876431 122222 2
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|.+|.|.
T Consensus 79 ~g~id~lv~~a 89 (259)
T PRK06125 79 AGDIDILVNNA 89 (259)
T ss_pred hCCCCEEEECC
Confidence 35689998874
No 389
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=85.28 E-value=1.4 Score=38.40 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred CEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEE
Q 023240 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv 222 (285)
-++|||||=+........ .-.+|+.||+++ ..-.+.+.|+.+.|.+. .+.+.||+|+
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~---------~~~e~FdvIs 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNS-------------QHPGILQQDFMERPLPK---------NESEKFDVIS 109 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCC-------------CCCCceeeccccCCCCC---------CcccceeEEE
Confidence 489999998666443311 124799999884 13457899999988643 3457799998
Q ss_pred EcCC
Q 023240 223 ANIP 226 (285)
Q Consensus 223 ~n~P 226 (285)
..+-
T Consensus 110 ~SLV 113 (219)
T PF11968_consen 110 LSLV 113 (219)
T ss_pred EEEE
Confidence 7644
No 390
>PRK06197 short chain dehydrogenase; Provisional
Probab=85.28 E-value=7.4 Score=35.04 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.+++||=.|+ +|.++.. +++.|.+|+.+..+++..+.+.+.+.. ..++.++.+|+.+..-....++-+. .
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~ 91 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR--A 91 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--h
Confidence 4678887775 3444444 444588999999988776655544432 1368888999887653322222221 1
Q ss_pred CCCCceEEEEcC
Q 023240 214 SSSGFAKVVANI 225 (285)
Q Consensus 214 ~~~~~D~Vv~n~ 225 (285)
..+..|++|.|.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 235689998874
No 391
>PTZ00357 methyltransferase; Provisional
Probab=85.25 E-value=2.7 Score=42.67 Aligned_cols=82 Identities=24% Similarity=0.272 Sum_probs=50.7
Q ss_pred EEEEEcCcccHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHhh---cC--------CCeEEEEcccccccchhhhh
Q 023240 144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFA---SI--------DQLKVLQEDFVKCHIRSHML 206 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~----~--~~V~giD~~~~~v~~a~~~~~---~~--------~~v~~~~gD~~~~~~~~~~~ 206 (285)
.|+=+|+|-|-+.....+. + .+|++||.|+..+.....+.. .. +.|+++..|+.++.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999976544332 2 489999999775555444432 22 24899999999985421000
Q ss_pred hHHhhhcCCCCceEEEEcCC
Q 023240 207 SLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 207 d~~~~~~~~~~~D~Vv~n~P 226 (285)
.. .....-+++|+||+.+-
T Consensus 783 s~-~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 783 SL-TLPADFGLCDLIVSELL 801 (1072)
T ss_pred cc-cccccccccceehHhhh
Confidence 00 00011136899999643
No 392
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.22 E-value=7.5 Score=34.17 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcc----cH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++.+|=.|++. |. ++..+++.|++|+..+.++...+.+++.....+...++..|+.+..-....++.+. ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence 467888888854 43 34556667899998888753323333322222333456778877543333333222 233
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|..
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 67899988753
No 393
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.15 E-value=3.3 Score=37.13 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=42.3
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHhC-------CEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccch
Q 023240 138 AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (285)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~~-------~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (285)
.+.+...++|+|||.|.++.+++..- ..++.||....... +-..+... +.++=+..|+.++.+.
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l~ 88 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDLS 88 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccchh
Confidence 34466789999999999999998752 47899998543321 11222222 2566677788777653
No 394
>PRK06500 short chain dehydrogenase; Provisional
Probab=85.09 E-value=8.6 Score=33.01 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.|++ |.++.. +++.|.+|+.++.+++.++.+.+.+. .++.++..|..+..-....++.+. ...+
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFG 79 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence 35677777754 444443 44558899999999776665554432 367788888876543222333332 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|..
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 395
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.03 E-value=4.5 Score=32.50 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=51.7
Q ss_pred EEEEEcCcccH---HHHHHHHhC-CEEEEEeCC--HHHHHHHHHHhhc-CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 144 IVLEIGPGTGS---LTNVLLNAG-ATVLAIEKD--QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~-~~V~giD~~--~~~v~~a~~~~~~-~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+||=.|++.|. ++..+++.+ ..|+.+..+ .+..+.....++. ..++.++..|+.+..-....++.+. ...+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI--KRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH--HHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 46667766443 444555564 488999998 6666666555543 2488999999877643333333332 2456
Q ss_pred CceEEEEcCCC
Q 023240 217 GFAKVVANIPF 227 (285)
Q Consensus 217 ~~D~Vv~n~P~ 227 (285)
..|++|.|...
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 78999998543
No 396
>PRK07831 short chain dehydrogenase; Provisional
Probab=85.02 E-value=8.3 Score=33.67 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCCEEEEEcC---cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc-C--CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGP---GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGc---G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.++++|=.|+ |.|. ++..+++.|.+|+.+|.+++.++.+.+.++. . .++.++.+|+.+..-....++.+. .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV--E 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence 4678888885 3454 3445556689999999998877766665543 2 267888999877532222222221 1
Q ss_pred CCCCceEEEEcCC
Q 023240 214 SSSGFAKVVANIP 226 (285)
Q Consensus 214 ~~~~~D~Vv~n~P 226 (285)
..+..|++|.|.-
T Consensus 94 ~~g~id~li~~ag 106 (262)
T PRK07831 94 RLGRLDVLVNNAG 106 (262)
T ss_pred HcCCCCEEEECCC
Confidence 2356899988754
No 397
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=85.01 E-value=0.56 Score=40.86 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~ 199 (285)
|-+....++.+.+.++.+.+|.--|.|..+..+.+. ..+++++|.+|-+.+.|....+.. +.+..+.|.+..+
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~ 105 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYI 105 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHH
Confidence 456778888999999999999999999999998887 468999999999999988776421 3444445555444
No 398
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.83 E-value=8 Score=35.48 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=34.3
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHH
Q 023240 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~V~giD~~~~~v~~a~~~ 182 (285)
......++++||=.||| .|.++..+|+. |+ +|+++|.+++..+.+++.
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 33444568889888875 34455566665 66 799999999999888763
No 399
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.66 E-value=5.4 Score=34.99 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=48.8
Q ss_pred CCCEEEEEcCc-ccHHHH----HHHHhCCEEEEEeCCH--HHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPG-TGSLTN----VLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG-~G~~t~----~la~~~~~V~giD~~~--~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.++++|=.|+| ++.++. .+++.|++|+.++++. +..+.....+. .++.++..|+.+..-....++.+. .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~--~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVR--E 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHH--H
Confidence 46789999983 344443 4455688999988763 44444444332 256778888877643333333322 2
Q ss_pred CCCCceEEEEcC
Q 023240 214 SSSGFAKVVANI 225 (285)
Q Consensus 214 ~~~~~D~Vv~n~ 225 (285)
..+..|++|.|.
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 336789999874
No 400
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.64 E-value=2.4 Score=42.09 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=44.5
Q ss_pred CcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcC
Q 023240 150 PGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 150 cG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
||.|..+..+++ .+.+|+.||.|++.++.+++. +...+.||+.+... +++ ..-...|.++...
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~-------L~~-a~i~~a~~viv~~ 489 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEI-------MQL-AHLDCARWLLLTI 489 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHH-------HHh-cCccccCEEEEEc
Confidence 555666665554 378999999999999888753 68899999988542 111 2335678776654
Q ss_pred CC
Q 023240 226 PF 227 (285)
Q Consensus 226 P~ 227 (285)
+-
T Consensus 490 ~~ 491 (558)
T PRK10669 490 PN 491 (558)
T ss_pred CC
Confidence 43
No 401
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.62 E-value=1.9 Score=42.28 Aligned_cols=59 Identities=22% Similarity=0.503 Sum_probs=45.4
Q ss_pred CEEEEEcCcccHHHHHHHHh------CCEEEEEeCCHHHHHHHHHH-hhcC-CCeEEEEcccccccc
Q 023240 143 DIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRER-FASI-DQLKVLQEDFVKCHI 201 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~------~~~V~giD~~~~~v~~a~~~-~~~~-~~v~~~~gD~~~~~~ 201 (285)
..|+=+|+|-|-+.....+. ..++++||.+|.++-.++.. ++.. ++|+++.+|+.+++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC
Confidence 36888999999987655432 35899999999999887753 3322 489999999999873
No 402
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.57 E-value=6.3 Score=34.40 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=46.0
Q ss_pred EEEEEcCcc-cH-HHHHHHHhCCEEEEEeCCHHHHHHHHH-HhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 144 IVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 144 ~VLDiGcG~-G~-~t~~la~~~~~V~giD~~~~~v~~a~~-~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
+++=+|||. |+ ++..|.+.|..|+.||.+++.++.... .. ....+++|+.+... +++ ..-..+|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~-------L~~-agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDV-------LEE-AGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHH-------HHh-cCCCcCCE
Confidence 455566663 22 334444558899999999999888443 32 67899999988642 221 33456777
Q ss_pred EEEcCCC
Q 023240 221 VVANIPF 227 (285)
Q Consensus 221 Vv~n~P~ 227 (285)
+++--.-
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 7774443
No 403
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=84.50 E-value=1.8 Score=38.10 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Q 023240 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~ 181 (285)
.++..+.+.+...+..+++|+-||+|.++..+...+..|+.-|+++..+...+.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 345666666654356799999999999999887778899999999987766663
No 404
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.33 E-value=3.4 Score=39.49 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEccccccc
Q 023240 127 SEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (285)
Q Consensus 127 ~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~ 200 (285)
++.+..+...+... ...+|+=+|+ |.++..+++ .+.+|+.+|.+++.++.+++.. +++.++.||+.+..
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~ 288 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTDQE 288 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHH
Confidence 44455555544322 2467887777 555555544 3789999999999988877754 36788999987653
Q ss_pred chhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 201 IRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 201 ~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
. ++. .....+|.|++-.+-
T Consensus 289 ~-------L~~-~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 289 L-------LEE-EGIDEADAFIALTND 307 (453)
T ss_pred H-------HHh-cCCccCCEEEECCCC
Confidence 2 111 233556777775553
No 405
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.27 E-value=2.5 Score=38.01 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
.++....|+|+..|..|-.+.+++-.|++||-- .|.+. +-..|.|+....|..++. +.....|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~s----L~dtg~v~h~r~DGfk~~------------P~r~~id 272 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQS----LMDTGQVTHLREDGFKFR------------PTRSNID 272 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhh----hhcccceeeeeccCcccc------------cCCCCCc
Confidence 468899999999999999999999999999954 33322 223478999999998875 2345678
Q ss_pred EEEEcCC---CCCcHHHHHHhccC
Q 023240 220 KVVANIP---FNISTDVIKQLLPM 240 (285)
Q Consensus 220 ~Vv~n~P---~~~~~~i~~~l~~~ 240 (285)
-.|++.- -....-+.+||.++
T Consensus 273 WmVCDmVEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 273 WMVCDMVEKPARVAALIAKWLVNG 296 (358)
T ss_pred eEEeehhcCcHHHHHHHHHHHHcc
Confidence 8888753 33334445566543
No 406
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.08 E-value=9.5 Score=32.83 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
++++|=.| |+|.++..+++ .+.+|+.++.++...+.....+... .++.++.+|+.+..-....++-+. ..
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 78 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR--DE 78 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 35688778 45666655544 4789999999988777665554322 268888999887542222222221 22
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|.+|.|.
T Consensus 79 ~~~id~vi~~a 89 (248)
T PRK08251 79 LGGLDRVIVNA 89 (248)
T ss_pred cCCCCEEEECC
Confidence 35679998874
No 407
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.79 E-value=8.3 Score=34.90 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|++.|. ++..+++.|++|+.+|.+ ....+.+...+... +++.++.+|+.+..-....++.+. . .
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~--~-~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV--G-L 87 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--H-h
Confidence 46788888876544 344556668999999874 33444444444332 378888999887543332222221 2 4
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 88 g~iD~li~nA 97 (306)
T PRK07792 88 GGLDIVVNNA 97 (306)
T ss_pred CCCCEEEECC
Confidence 6789999874
No 408
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.74 E-value=10 Score=32.96 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++++|=.| |+|.++..++ +.|.+|+.++.+.+..+....... .++.++.+|+.+..-....++.+. ...+
T Consensus 5 ~~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (257)
T PRK07067 5 QGKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG 79 (257)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 356788787 4455555444 458899999999887766655442 368888999876543322232222 1235
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.+|.|.
T Consensus 80 ~id~li~~a 88 (257)
T PRK07067 80 GIDILFNNA 88 (257)
T ss_pred CCCEEEECC
Confidence 678888864
No 409
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=83.73 E-value=8.4 Score=33.68 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G--~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.| . ++..+++.|.+|+.++.+.+.++..+... .+++..+.+|+.+..-....++.+. ...+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 79 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCV--AAFGK 79 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence 4668888886433 2 33344556899999999987666554332 1367888888876532222222211 12356
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|++|.|.
T Consensus 80 id~li~~A 87 (262)
T TIGR03325 80 IDCLIPNA 87 (262)
T ss_pred CCEEEECC
Confidence 78888874
No 410
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=83.71 E-value=4.1 Score=35.27 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=45.1
Q ss_pred cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC-CCceEEEEcC
Q 023240 151 GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANI 225 (285)
Q Consensus 151 G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~-~~~D~Vv~n~ 225 (285)
|.|. .+..+++.|++|+.++.+.+.++.+.+.+......+++..|+.+..-....++.+.+ .. +..|++|.|.
T Consensus 7 GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~g~iD~lV~~a 81 (241)
T PF13561_consen 7 GIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE--RFGGRIDILVNNA 81 (241)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH--HHCSSESEEEEEE
T ss_pred ChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh--hcCCCeEEEEecc
Confidence 3444 445566679999999999997544444433222355799998765443333333322 23 7889988763
No 411
>PRK05717 oxidoreductase; Validated
Probab=83.34 E-value=9.6 Score=33.10 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|.+ |.++.. +++.|++|+.++.++...+...+... .++.++.+|+.+..-.....+-+. ...+
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 83 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG--ENAWFIAMDVADEAQVAAGVAEVL--GQFG 83 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46788888853 444444 44458899999988765544433331 367888999887542222122221 1235
Q ss_pred CceEEEEcCCC
Q 023240 217 GFAKVVANIPF 227 (285)
Q Consensus 217 ~~D~Vv~n~P~ 227 (285)
.+|.+|.|..+
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999987543
No 412
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.01 E-value=2.6 Score=33.88 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=31.3
Q ss_pred EEcCccc--HHHHHHH--Hh--CCEEEEEeCCHHHHHHHHHH--hhcC---CCeEEEEccc
Q 023240 147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER--FASI---DQLKVLQEDF 196 (285)
Q Consensus 147 DiGcG~G--~~t~~la--~~--~~~V~giD~~~~~v~~a~~~--~~~~---~~v~~~~gD~ 196 (285)
|||+..| ..+..+. .. +.+|+++|.++..++.++.+ +..+ +.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6666554 23 57899999999999999998 4433 2456555433
No 413
>PRK06057 short chain dehydrogenase; Provisional
Probab=83.00 E-value=11 Score=32.81 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.|++ |.++.. +++.|++|+.++.++.-.+.....+. ..++..|..+.......++.+. ...+
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~--~~~~ 78 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAA--ETYG 78 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence 46789999974 444444 44458899999998776655544432 2567778776543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|..
T Consensus 79 ~id~vi~~ag 88 (255)
T PRK06057 79 SVDIAFNNAG 88 (255)
T ss_pred CCCEEEECCC
Confidence 6798888743
No 414
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.92 E-value=12 Score=32.97 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=50.1
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
++++|=.|+ +|.++..+ ++.|++|++++.+++..+........ ..++.++.+|+.+...... ++-+. ..
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~--~~ 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL--KE 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH--Hh
Confidence 457888885 44444444 44588999999988776655544332 1378899999987543222 22221 22
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
.+..|.||.+..
T Consensus 79 ~~~id~vv~~ag 90 (280)
T PRK06914 79 IGRIDLLVNNAG 90 (280)
T ss_pred cCCeeEEEECCc
Confidence 356799888753
No 415
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.83 E-value=11 Score=32.67 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+++++|=.|++ |.++.. +++.|.+|+.++.++...+..+.......++.++..|+.+..-....++-+. ...+
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 82 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV--AKFG 82 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence 46688888854 444444 4455889999998877663333222222478889999876542222222211 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.||.|..
T Consensus 83 ~id~vi~~ag 92 (258)
T PRK08628 83 RIDGLVNNAG 92 (258)
T ss_pred CCCEEEECCc
Confidence 6799988754
No 416
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.73 E-value=11 Score=33.53 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=49.4
Q ss_pred EEEEEcCcccHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHhhcCC-CeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~---~~~~V~giD~~~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
.+|=-|+ |.++..+++ .|.+|+.++.+++.++.+.+.+...+ ++.++..|+.+..-....++.+ ...+..|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~---~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA---QTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH---HhcCCCC
Confidence 4555554 456666554 37899999999877666555554333 6788889987754332222222 2235689
Q ss_pred EEEEcCCC
Q 023240 220 KVVANIPF 227 (285)
Q Consensus 220 ~Vv~n~P~ 227 (285)
.+|.|.-.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99998543
No 417
>PRK05855 short chain dehydrogenase; Validated
Probab=82.73 E-value=9.3 Score=37.34 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=52.7
Q ss_pred CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+.++|=+|+ +|.++.. +++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..-....++.+. ...+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 457887775 4444444 4455889999999988777666555433 378889999987653333333322 2335
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|++|.|.
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 689999874
No 418
>PRK09186 flagellin modification protein A; Provisional
Probab=82.66 E-value=11 Score=32.54 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
++++||=.|++ |.++..+ ++.|.+|+.++.+++..+.+...+... ..+.++.+|+.+..-....++.+. .
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~ 79 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA--E 79 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH--H
Confidence 45788888864 4444444 445889999999988777666555321 256677889887542222222221 1
Q ss_pred CCCCceEEEEcC
Q 023240 214 SSSGFAKVVANI 225 (285)
Q Consensus 214 ~~~~~D~Vv~n~ 225 (285)
.-+..|.+|.|.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 234579999874
No 419
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=82.61 E-value=0.71 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.4
Q ss_pred CceEEEEcCCCCCcH
Q 023240 217 GFAKVVANIPFNIST 231 (285)
Q Consensus 217 ~~D~Vv~n~P~~~~~ 231 (285)
.||+||+||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999996554
No 420
>PRK07825 short chain dehydrogenase; Provisional
Probab=82.53 E-value=11 Score=33.09 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++++|=.|++. .++. .+++.|.+|+.++.+++.++.+...+. ++.++.+|+.+..-....++-+.. ..+.
T Consensus 5 ~~~ilVtGasg-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 78 (273)
T PRK07825 5 GKVVAITGGAR-GIGLATARALAALGARVAIGDLDEALAKETAAELG---LVVGGPLDVTDPASFAAFLDAVEA--DLGP 78 (273)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---cceEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 56888888654 3444 345558899999999887766554432 577888998775432222222221 2256
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|++|.|.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 79999874
No 421
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.52 E-value=10 Score=33.96 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCH-HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~-~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++++|=.|++.|. ++..+++.|.+|+.++.++ ...+.....++.. .++.++.+|+.+.......++.+. ...
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~--~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV--REL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 46788888854333 3334455688999998874 2333333333332 368889999877543332222222 123
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|.+|.|.
T Consensus 123 ~~iD~lI~~A 132 (290)
T PRK06701 123 GRLDILVNNA 132 (290)
T ss_pred CCCCEEEECC
Confidence 4679988764
No 422
>PRK07074 short chain dehydrogenase; Provisional
Probab=82.44 E-value=13 Score=32.25 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=47.9
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
+++|=.|++. .++.. |++.|.+|+.++.++.-.+.....+. ..++.++.+|+.+..-....++-+. ...+..
T Consensus 3 k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~ 78 (257)
T PRK07074 3 RTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAA--AERGPV 78 (257)
T ss_pred CEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHH--HHcCCC
Confidence 4677777644 34444 44558899999999877665554442 2368888999877643222221111 122457
Q ss_pred eEEEEcC
Q 023240 219 AKVVANI 225 (285)
Q Consensus 219 D~Vv~n~ 225 (285)
|.||.+.
T Consensus 79 d~vi~~a 85 (257)
T PRK07074 79 DVLVANA 85 (257)
T ss_pred CEEEECC
Confidence 9988875
No 423
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.35 E-value=13 Score=32.51 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEe-CCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD-~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+++++|=.|++.|. ++..+++.|++|+.+. .+++.++...+.++. ..++.++..|+.+..-....++.+. ..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID--ED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 46788888865443 4445566688988875 455555544444332 2368889999987543333333332 12
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|++|.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 35689999875
No 424
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.33 E-value=12 Score=32.19 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++.|. ++..+++.|.+|+.++.++. ..+....... +++.++..|+.+..-....++.+. ...+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV--EEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46789988975432 23344455889999998752 2222222222 368889999887543222222221 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.+|.|.-
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 425
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.26 E-value=11 Score=33.15 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCC---HHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhh
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD---QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~---~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
.++++|=.|.+ .|. ++..+++.|++|+.++.+ ++.++.+.+... .+++.++..|+.+..-....++.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~-- 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK-- 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH--
Confidence 46789999964 444 344455568899988654 334444433332 2467888899877643333333322
Q ss_pred cCCCCceEEEEcC
Q 023240 213 KSSSGFAKVVANI 225 (285)
Q Consensus 213 ~~~~~~D~Vv~n~ 225 (285)
..-+..|++|.|.
T Consensus 83 ~~~g~ld~lv~na 95 (257)
T PRK08594 83 EEVGVIHGVAHCI 95 (257)
T ss_pred HhCCCccEEEECc
Confidence 2236789998774
No 426
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=82.20 E-value=11 Score=32.65 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=48.9
Q ss_pred CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhc-C--CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~-~--~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+++||=.|+ +|.++.. +++.|++|+.++.+....+.....+.. . .++.++.+|+.+.......++-+. ..
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~ 78 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD--EI 78 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH--HH
Confidence 356888885 4555544 445588999999998766555444332 1 368889999876532222222111 12
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|.+|.|.
T Consensus 79 ~~~id~vv~~a 89 (259)
T PRK12384 79 FGRVDLLVYNA 89 (259)
T ss_pred cCCCCEEEECC
Confidence 25678888874
No 427
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.16 E-value=7.2 Score=30.05 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=43.1
Q ss_pred cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCCC
Q 023240 151 GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (285)
Q Consensus 151 G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P~ 227 (285)
|.|..+..+|+. |++|+++|.++.-.+.+++. +--.++..+-.+ +. +.+.+......+|+||-...-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~--~~----~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GADHVIDYSDDD--FV----EQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TESEEEETTTSS--HH----HHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cccccccccccc--cc----cccccccccccceEEEEecCc
Confidence 578899999887 89999999999999998865 211222222221 11 122221344579999987663
No 428
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.12 E-value=10 Score=32.57 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhc--CCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~--~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++|+=.|+ +|.++..+ ++.|.+|+.++.+++..+...+.... .+++.++.+|..+..- ..++++. -..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~--~~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTAS---HAAFLDS--LPA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHH---HHHHHHH--Hhh
Confidence 36777774 45555544 44588999999998766655444332 2478899999887532 1222221 112
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
.+|.+|.|.
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 458888764
No 429
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.07 E-value=3.1 Score=42.00 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=45.1
Q ss_pred CEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
++|+=+||| ..+..+ .+.+.+++.+|.|++.++.+++. +..++.||+.+... +++ ..-...
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~-------L~~-agi~~A 465 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDL-------LES-AGAAKA 465 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHH-------HHh-cCCCcC
Confidence 467766665 333333 33478999999999999988753 57899999988643 221 233456
Q ss_pred eEEEEcC
Q 023240 219 AKVVANI 225 (285)
Q Consensus 219 D~Vv~n~ 225 (285)
+.+|.-.
T Consensus 466 ~~vvv~~ 472 (621)
T PRK03562 466 EVLINAI 472 (621)
T ss_pred CEEEEEe
Confidence 6666543
No 430
>PRK05599 hypothetical protein; Provisional
Probab=82.03 E-value=12 Score=32.48 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=50.1
Q ss_pred EEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
++|=.|++.|. ++..++ .|.+|+.++.+++.++.+.+.++..+ .+.++..|+.+..-.....+.+. ...+..
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~i 78 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ--ELAGEI 78 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH--HhcCCC
Confidence 45666665443 233344 38899999999888877766665433 47788899887653333333332 223568
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|++|.|.-
T Consensus 79 d~lv~nag 86 (246)
T PRK05599 79 SLAVVAFG 86 (246)
T ss_pred CEEEEecC
Confidence 99988743
No 431
>PRK06180 short chain dehydrogenase; Provisional
Probab=81.94 E-value=11 Score=33.33 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=48.7
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 142 ~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
+++||=.|++.|. ++..+++.|.+|++++.+++.++...... .+++..+.+|+.+..-....++-+. ...+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~--~~~~~~ 79 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAE--ATFGPI 79 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHH--HHhCCC
Confidence 4678888874432 23344455889999999987765544332 2368888889877542222222111 122457
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|+||.|..
T Consensus 80 d~vv~~ag 87 (277)
T PRK06180 80 DVLVNNAG 87 (277)
T ss_pred CEEEECCC
Confidence 99988743
No 432
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=81.84 E-value=13 Score=32.89 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhh-hcCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER-RKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~-~~~~~ 216 (285)
+++.++==|+.+|. .+..+++.|.+|+.+.+..+.++.++..+.. +.+..+..|..+..-- ...++. ...-+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~---~~~i~~~~~~~g 80 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAV---EAAIEALPEEFG 80 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHH---HHHHHHHHHhhC
Confidence 34567776766665 4566777799999999999999998888765 5688888888876321 112221 13446
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|++|-|-
T Consensus 81 ~iDiLvNNA 89 (246)
T COG4221 81 RIDILVNNA 89 (246)
T ss_pred cccEEEecC
Confidence 789999983
No 433
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.80 E-value=0.76 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHhhc
Q 023240 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
+.++..++.......+..|||+|.|.-.++..|... ...|.-.|-+++.++..++....
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 444455555555556789999999966665555433 46899999999999888776543
No 434
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=81.63 E-value=15 Score=31.64 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=48.5
Q ss_pred EEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCCc
Q 023240 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~ 218 (285)
++|=.|+ +|.++..+ ++.|.+|+.++.++...+...+.+... .++.++.+|+.+.......++.+. ...+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA--EKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcCCC
Confidence 4566674 45555544 445889999999877666555544433 368889999877542222222221 223467
Q ss_pred eEEEEcCC
Q 023240 219 AKVVANIP 226 (285)
Q Consensus 219 D~Vv~n~P 226 (285)
|.+|.|..
T Consensus 79 d~vi~~ag 86 (254)
T TIGR02415 79 DVMVNNAG 86 (254)
T ss_pred CEEEECCC
Confidence 99988754
No 435
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.61 E-value=13 Score=32.60 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhh-
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR- 212 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~- 212 (285)
+++++|=.|++ |.++..+ ++.|.+|++++.+++..+.....+... .++.++.+|+.+..-.. .+++..
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~ 81 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA---RAVDAAT 81 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH---HHHHHHH
Confidence 35788988854 4444444 445889999999877665554444322 36788889987653221 122110
Q ss_pred cCCCCceEEEEcC
Q 023240 213 KSSSGFAKVVANI 225 (285)
Q Consensus 213 ~~~~~~D~Vv~n~ 225 (285)
...+..|.+|.|.
T Consensus 82 ~~~~~~d~li~~a 94 (276)
T PRK05875 82 AWHGRLHGVVHCA 94 (276)
T ss_pred HHcCCCCEEEECC
Confidence 1234678988764
No 436
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=81.58 E-value=14 Score=33.65 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=51.1
Q ss_pred CCEEEEEcCcccH---HHHHHHHhC-CEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~---~t~~la~~~-~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++|=.|++.|. ++..+++.| .+|+.+..+++..+.+.+.+... .++.++..|+.+..-....++.+. ...+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR--ESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 4577777765433 334455568 89999999887776665555422 367788888877643332333222 1235
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|++|.|.
T Consensus 81 ~iD~lI~nA 89 (314)
T TIGR01289 81 PLDALVCNA 89 (314)
T ss_pred CCCEEEECC
Confidence 689999884
No 437
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.09 E-value=15 Score=31.50 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEEcccccccc--hhhhhhHHhhh
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI--RSHMLSLFERR 212 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~--~~~~~d~~~~~ 212 (285)
++++||=.|+ +|.++.. +++.|.+|+.++.+++..+.....+... ..+.++..|..+... .....+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~- 82 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE- 82 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH-
Confidence 4678999995 4444444 4445889999999988776665554332 246677777754321 1111222211
Q ss_pred cCCCCceEEEEcC
Q 023240 213 KSSSGFAKVVANI 225 (285)
Q Consensus 213 ~~~~~~D~Vv~n~ 225 (285)
...+..|.||.|.
T Consensus 83 ~~~~~id~vi~~a 95 (239)
T PRK08703 83 ATQGKLDGIVHCA 95 (239)
T ss_pred HhCCCCCEEEEec
Confidence 1114678888763
No 438
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=80.93 E-value=12 Score=32.57 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.|+. |.++.. +++.|++|++++.+.. +...+.+... .++..+..|+.+..-....++-+. ...
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 83 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAV--AEF 83 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 46788888864 444444 4445889999987642 1222222222 367788888876432222222221 223
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|++|.|.-
T Consensus 84 ~~~D~li~~Ag 94 (253)
T PRK08993 84 GHIDILVNNAG 94 (253)
T ss_pred CCCCEEEECCC
Confidence 56899998753
No 439
>PRK08324 short chain dehydrogenase; Validated
Probab=80.78 E-value=11 Score=38.47 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++||=.|++ |.++. .+++.|.+|+.+|++++..+.+...+...+++.++.+|+.+..-....++-+. ...+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~--~~~g 497 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAA--LAFG 497 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHH--HHcC
Confidence 45788988853 33333 34445889999999998877766655433478888899876532222121111 1235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|+||.|.-
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 440
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=80.78 E-value=4.8 Score=36.75 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=40.7
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHhCCEEEEEeCCHHHHHHHHHHhhc
Q 023240 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (285)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~V~giD~~~~~v~~a~~~~~~ 185 (285)
++...+.+|.-||+|.-.....+++...+|..||+|+.-++.-+-+++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence 4455789999999998878888888889999999999998887766553
No 441
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.74 E-value=12 Score=32.42 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=46.3
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++||=.|++ |.++.. +++.|.+|+++..++...+......... .++.++.+|+.+..- +.. .....
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~--~~~~~ 73 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID------RAQ--AAEWD 73 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH------HHH--HhcCC
Confidence 468878864 444443 4445889999999877666555544333 368888999877431 111 11236
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|+||.|.
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 79999873
No 442
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=80.73 E-value=2.7 Score=36.09 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=29.0
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CEEEEEeCC
Q 023240 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKD 172 (285)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~V~giD~~ 172 (285)
...++++.+|+|+-.|.|++|..++.. + +.|++.=.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 344568899999999999999999876 2 477776543
No 443
>PRK06198 short chain dehydrogenase; Provisional
Probab=80.42 E-value=12 Score=32.37 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCE-EEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~-V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.+++||=.|++ |.++..++ +.|.+ |+.++.+++........+... .++.++..|+.+.......++.+. ..
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD--EA 81 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 46788888853 44555444 44777 999999876655444444322 367788889877543222222221 12
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|.+|.+.
T Consensus 82 ~g~id~li~~a 92 (260)
T PRK06198 82 FGRLDALVNAA 92 (260)
T ss_pred hCCCCEEEECC
Confidence 24578988874
No 444
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.40 E-value=16 Score=31.34 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCEEEEEeCCH-HHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~~~-~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+++++|=.|+ +|.++..+ ++.|.+|+++..+. ...+.+...++.. .++.++.+|+.+..-....++.+. ..
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 4578998885 34444444 44588999988764 3333333333322 367888999877542222222111 12
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
.+..|.+|.|..
T Consensus 82 ~~~~d~vi~~ag 93 (248)
T PRK07806 82 FGGLDALVLNAS 93 (248)
T ss_pred CCCCcEEEECCC
Confidence 246788888753
No 445
>PRK08278 short chain dehydrogenase; Provisional
Probab=80.39 E-value=12 Score=33.09 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHH-------HHHHHHHhhcC-CCeEEEEcccccccchhhhhhHH
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF 209 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~-------v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~ 209 (285)
.++++|=.|++.|. ++..+++.|.+|+.++.+.+. +..+.+.+... .++.++.+|+.+..-....++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 45688888875433 333445568899999986532 23333333322 37888899987764322222222
Q ss_pred hhhcCCCCceEEEEcCC
Q 023240 210 ERRKSSSGFAKVVANIP 226 (285)
Q Consensus 210 ~~~~~~~~~D~Vv~n~P 226 (285)
. ...+..|.+|.|..
T Consensus 85 ~--~~~g~id~li~~ag 99 (273)
T PRK08278 85 V--ERFGGIDICVNNAS 99 (273)
T ss_pred H--HHhCCCCEEEECCC
Confidence 1 12246899988744
No 446
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.20 E-value=15 Score=31.89 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCC------------HHHHHHHHHHhhcC-CCeEEEEcccccccch
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIR 202 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~------------~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~ 202 (285)
.+++||=.|++ .|. ++..+++.|++|+.++.+ +.... +...+... .++.++..|+.+..-.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence 35689999974 443 344455568899999876 22222 22223222 3688899998775432
Q ss_pred hhhhhHHhhhcCCCCceEEEEcC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANI 225 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~ 225 (285)
...++.+. ...+..|.||.|.
T Consensus 83 ~~~~~~~~--~~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVS--ERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHH--HhCCCCCEEEECC
Confidence 22222222 1235689888875
No 447
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.15 E-value=9.5 Score=35.14 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=59.3
Q ss_pred CCEEEEEcC--cccH-HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 142 GDIVLEIGP--GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 142 ~~~VLDiGc--G~G~-~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+..++=-|+ |.|. .+..||.+|++|+-.-.+.+..+.+++.+... .++.+++.|..++.---...+.++ ...
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~--~~~ 112 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK--KKE 112 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH--hcC
Confidence 456666664 5565 45667778999999999998888887777642 378889999988754333344443 245
Q ss_pred CCceEEEEc-----CCCCCc
Q 023240 216 SGFAKVVAN-----IPFNIS 230 (285)
Q Consensus 216 ~~~D~Vv~n-----~P~~~~ 230 (285)
.+.|+.|.| +|+...
T Consensus 113 ~~ldvLInNAGV~~~~~~~t 132 (314)
T KOG1208|consen 113 GPLDVLINNAGVMAPPFSLT 132 (314)
T ss_pred CCccEEEeCcccccCCcccC
Confidence 667888876 566433
No 448
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.91 E-value=1.7 Score=42.23 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHhhcCC---CeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~-~~V~giD~~~~~v~~a~~~~~~~~---~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
++-+|||.=|++|.-++..|.. + .+|++-|.++.+++..+.|++.++ -++..++|+..+.+... ..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--------~~ 180 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--------MV 180 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--------cc
Confidence 5678999999999999988876 3 489999999999999999998763 46677778766543210 12
Q ss_pred CCCceEEEEcCCCCCcHHHHH
Q 023240 215 SSGFAKVVANIPFNISTDVIK 235 (285)
Q Consensus 215 ~~~~D~Vv~n~P~~~~~~i~~ 235 (285)
...||+|=.+ ||.-..++++
T Consensus 181 ~~~FDvIDLD-PyGs~s~FLD 200 (525)
T KOG1253|consen 181 AKFFDVIDLD-PYGSPSPFLD 200 (525)
T ss_pred ccccceEecC-CCCCccHHHH
Confidence 2668887665 5666665554
No 449
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.71 E-value=17 Score=30.93 Aligned_cols=83 Identities=12% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEE-eCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~gi-D~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++++|=+|+ +|.++..++ +.|.+|+.+ +.+++..+.....+... .++.++.+|+.+..-....++.+. ...
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV--EKF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 457887874 566555544 458899998 99887766655554432 368899999987543222222221 122
Q ss_pred CCceEEEEcCCC
Q 023240 216 SGFAKVVANIPF 227 (285)
Q Consensus 216 ~~~D~Vv~n~P~ 227 (285)
+.+|.||.+...
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 468999987543
No 450
>PRK06841 short chain dehydrogenase; Provisional
Probab=79.42 E-value=16 Score=31.51 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++++||=.|++.|. ++..+++.|.+|+.++.++...+.+.... ..++.++..|+.+..-....++.+. ...+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 89 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVI--SAFGR 89 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 46788888854332 33445556889999999887544433321 1356788888876543222232222 12346
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.+|.|..
T Consensus 90 ~d~vi~~ag 98 (255)
T PRK06841 90 IDILVNSAG 98 (255)
T ss_pred CCEEEECCC
Confidence 799998754
No 451
>PRK06114 short chain dehydrogenase; Provisional
Probab=79.39 E-value=17 Score=31.50 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHH-HHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQH-MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~-~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+++++|=.|. +|.++..++ +.|++|+.++.+.+ .++.+.+.+... .++.++..|+.+..-.....+-+. ..
T Consensus 7 ~~k~~lVtG~-s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~ 83 (254)
T PRK06114 7 DGQVAFVTGA-GSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE--AE 83 (254)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 4668887774 445555544 45889999998643 344444444332 367888899876542222222221 23
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
.+..|.+|.|.-
T Consensus 84 ~g~id~li~~ag 95 (254)
T PRK06114 84 LGALTLAVNAAG 95 (254)
T ss_pred cCCCCEEEECCC
Confidence 366899998754
No 452
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.24 E-value=17 Score=30.88 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
+.+||=.|+ +|.++..+++ .|.+|++++.++...+.....+... .++.++.+|+.+..-....++-+. ...+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAV--EAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 467887775 6777666654 4889999999987766655544432 378888899876532221111111 1224
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.||.+.
T Consensus 82 ~id~vi~~a 90 (246)
T PRK05653 82 ALDILVNNA 90 (246)
T ss_pred CCCEEEECC
Confidence 578888864
No 453
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.13 E-value=9 Score=36.72 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=46.6
Q ss_pred cccCCcccCCHHHHHHHHHHhcC-CCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240 117 KSLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 117 ~~~g~~~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~ 181 (285)
..|...|-+.+.....+++.... .++++|+=+|+|. |......++. |++|+.+|.++...+.|+.
T Consensus 176 ~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 176 SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred ccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34455555667777777777654 3689999999995 4444444444 8899999999888777765
No 454
>PRK07201 short chain dehydrogenase; Provisional
Probab=79.08 E-value=14 Score=37.10 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++|=.|++ |.++.. +++.|.+|+.++.+++..+.+.+.+... +++.++.+|+.+..-....++-+. ...+
T Consensus 371 ~k~vlItGas-~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 447 (657)
T PRK07201 371 GKVVLITGAS-SGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDIL--AEHG 447 (657)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HhcC
Confidence 5678877754 444444 4455889999999988777666555432 478889999887543222222221 2235
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|++|.|.-
T Consensus 448 ~id~li~~Ag 457 (657)
T PRK07201 448 HVDYLVNNAG 457 (657)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 455
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.99 E-value=11 Score=34.83 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=40.1
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~ 199 (285)
.+.+||=.| |+|+++..+++ .|.+|++++.+..........+...++++++.+|+.+.
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEE 70 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCH
Confidence 456899888 57888777765 37899999887654443333332234788999998775
No 456
>PRK12743 oxidoreductase; Provisional
Probab=78.82 E-value=19 Score=31.28 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=48.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEEe-CCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD-~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
+++||=.|++ |.++..++ +.|.+|+.+. .+.+..+.+...+... .++.++..|..+..-....++-+. ...
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 78 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLI--QRL 78 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 3578888854 44555554 4588988775 4555555555444433 378899999877543222222221 223
Q ss_pred CCceEEEEcCC
Q 023240 216 SGFAKVVANIP 226 (285)
Q Consensus 216 ~~~D~Vv~n~P 226 (285)
+..|.+|.|.-
T Consensus 79 ~~id~li~~ag 89 (256)
T PRK12743 79 GRIDVLVNNAG 89 (256)
T ss_pred CCCCEEEECCC
Confidence 56799998753
No 457
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=78.68 E-value=11 Score=34.99 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=49.4
Q ss_pred CCEEEEEcCcccHHH----HHHHHhCCEEEEEeC----CHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 142 GDIVLEIGPGTGSLT----NVLLNAGATVLAIEK----DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t----~~la~~~~~V~giD~----~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
+.+||=.| |.|+++ +.|.+.|..|+++|. ..+.+..+++-......|.++++|..+.+.....|+.
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~----- 75 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSE----- 75 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhh-----
Confidence 35677776 677754 445556899999995 3445555555544335899999999998765544433
Q ss_pred CCCCceEEEE
Q 023240 214 SSSGFAKVVA 223 (285)
Q Consensus 214 ~~~~~D~Vv~ 223 (285)
..||.|+.
T Consensus 76 --~~fd~V~H 83 (343)
T KOG1371|consen 76 --VKFDAVMH 83 (343)
T ss_pred --cCCceEEe
Confidence 44788776
No 458
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.64 E-value=9.8 Score=35.00 Aligned_cols=77 Identities=18% Similarity=0.057 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.| |+|+++..+++ .|.+|++++.++..............+++++.+|+.+... ..+++ ...
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~----~~~ 74 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAK---LRKAI----AEF 74 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHH---HHHHH----hhc
Confidence 357888888 66776666654 4789999998765433222222212367788888876431 11222 122
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
.+|.||.+.
T Consensus 75 ~~d~vih~A 83 (349)
T TIGR02622 75 KPEIVFHLA 83 (349)
T ss_pred CCCEEEECC
Confidence 468887653
No 459
>PRK06179 short chain dehydrogenase; Provisional
Probab=78.61 E-value=11 Score=33.00 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++|+=.|+ +|.++..++ +.|.+|++++.++.... ...+++++.+|+.+..-....++.+. ...+.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~g~ 73 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVI--ARAGR 73 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHH--HhCCC
Confidence 457888885 566666554 45889999999865432 12368889999877543222222221 23456
Q ss_pred ceEEEEcCCC
Q 023240 218 FAKVVANIPF 227 (285)
Q Consensus 218 ~D~Vv~n~P~ 227 (285)
.|++|.|.-+
T Consensus 74 ~d~li~~ag~ 83 (270)
T PRK06179 74 IDVLVNNAGV 83 (270)
T ss_pred CCEEEECCCC
Confidence 8999988543
No 460
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.37 E-value=14 Score=32.46 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=44.7
Q ss_pred CCCEEEEEcC-cccHH----HHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 141 EGDIVLEIGP-GTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 141 ~~~~VLDiGc-G~G~~----t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
.++++|=.|+ |++.+ +..+++.|++|+.++......+.+++..+..+....+..|+.+..-....++.+. ...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLG--QHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHH--HHh
Confidence 4678998996 33333 4445566889988765422222222221222333467788876543333333322 223
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 83 g~iD~lvnnA 92 (260)
T PRK06997 83 DGLDGLVHSI 92 (260)
T ss_pred CCCcEEEEcc
Confidence 6789999884
No 461
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=78.12 E-value=27 Score=33.25 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccHHHH-----HHHHhCCEEEEEeCCHHHHH------------HHHHHhhcCC-CeEEEEcccccccch
Q 023240 141 EGDIVLEIGPGTGSLTN-----VLLNAGATVLAIEKDQHMVG------------LVRERFASID-QLKVLQEDFVKCHIR 202 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~-----~la~~~~~V~giD~~~~~v~------------~a~~~~~~~~-~v~~~~gD~~~~~~~ 202 (285)
.++++|=+|+.+|.-.. .+ ..|+++++++...+..+ ...+.++..+ .+..+.+|+.+..-.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 45789999998777333 44 55889989885431111 1222222223 567789999886544
Q ss_pred hhhhhHHhhhcCCCCceEEEEcCCCC
Q 023240 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (285)
Q Consensus 203 ~~~~d~~~~~~~~~~~D~Vv~n~P~~ 228 (285)
+..++.+.. .-+..|++|.|..+.
T Consensus 119 ~~lie~I~e--~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 119 QKVIELIKQ--DLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHH--hcCCCCEEEECCccC
Confidence 444554432 346789999986654
No 462
>PRK06484 short chain dehydrogenase; Validated
Probab=77.88 E-value=16 Score=35.54 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.++.+|=.|++.|. ++..+++.|.+|+.++.+++.++.+.+... +++..+..|+.+..-....++.+. ...+.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 343 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQ--ARWGR 343 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 35677877765543 344455568999999999887776665442 356677888877543222232222 23367
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
.|++|.|.
T Consensus 344 id~li~nA 351 (520)
T PRK06484 344 LDVLVNNA 351 (520)
T ss_pred CCEEEECC
Confidence 89999874
No 463
>COG4889 Predicted helicase [General function prediction only]
Probab=77.66 E-value=2.9 Score=43.59 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=31.1
Q ss_pred cCCcccCCHHHHHHHHHHhcC-----------CCCCEEEEEcCcccHHHHHHHH
Q 023240 119 LGQHYMLNSEINDQLAAAAAV-----------QEGDIVLEIGPGTGSLTNVLLN 161 (285)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l~~-----------~~~~~VLDiGcG~G~~t~~la~ 161 (285)
+|- .+++-+++++++....- .++-+|||..+|||.+...+..
T Consensus 813 LGI-VyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~ 865 (1518)
T COG4889 813 LGI-VYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLS 865 (1518)
T ss_pred cce-eecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHH
Confidence 455 67888999988876531 1456899999999998766544
No 464
>PRK06483 dihydromonapterin reductase; Provisional
Probab=77.65 E-value=17 Score=31.06 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 143 ~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+++|=.|++.|. ++..+++.|.+|+.++.+++.... .+... ++.++..|+.+..-....++-+. ...+..|
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~~~id 76 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAID---GLRQA-GAQCIQADFSTNAGIMAFIDELK--QHTDGLR 76 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHH---HHHHc-CCEEEEcCCCCHHHHHHHHHHHH--hhCCCcc
Confidence 467877765443 344455668999999988653321 11111 36788888876543222222222 1235679
Q ss_pred EEEEcC
Q 023240 220 KVVANI 225 (285)
Q Consensus 220 ~Vv~n~ 225 (285)
.+|.|.
T Consensus 77 ~lv~~a 82 (236)
T PRK06483 77 AIIHNA 82 (236)
T ss_pred EEEECC
Confidence 988874
No 465
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=77.33 E-value=9.5 Score=27.56 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=19.4
Q ss_pred CCCEEEEEcCcccH-HHHHHHHh---CCEEEEEeCCH
Q 023240 141 EGDIVLEIGPGTGS-LTNVLLNA---GATVLAIEKDQ 173 (285)
Q Consensus 141 ~~~~VLDiGcG~G~-~t~~la~~---~~~V~giD~~~ 173 (285)
.+++||=|||-+|+ ++..++.. +++.+||-...
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 45899999999999 45444443 66888877654
No 466
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=77.22 E-value=13 Score=34.36 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=37.5
Q ss_pred HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHh
Q 023240 136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (285)
Q Consensus 136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~ 183 (285)
...+.++++||=.|+ |.|.++..+|+. |.+|++++.+++-.+.+++.+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 345667899999987 477788888876 889999999988888776443
No 467
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.55 E-value=7 Score=38.52 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240 140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 140 ~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~~ 182 (285)
.++.+|+=+|||. |..++..|+. |++|+++|.+++..+.+++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 4688999999996 5566666665 88999999999999998873
No 468
>PRK07041 short chain dehydrogenase; Provisional
Probab=76.32 E-value=14 Score=31.26 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=43.6
Q ss_pred cccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceEEEEcCC
Q 023240 151 GTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 151 G~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
|+|.++.. +++.|.+|+.++.+++..+.....++...++.++..|+.+..-. ...+ ...+..|.+|.|..
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~---~~~~~id~li~~ag 78 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAV---DAFF---AEAGPFDHVVITAA 78 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHH---HHHH---HhcCCCCEEEECCC
Confidence 34444444 44558899999999876666555443234688889998775421 1222 12356799988753
No 469
>PRK09135 pteridine reductase; Provisional
Probab=76.31 E-value=27 Score=29.79 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCC-HHHHHHHHHHhhcC--CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~-~~~v~~a~~~~~~~--~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.+++||=.|+ +|.++..++ +.|.+|++++.+ +.-.+.....+... .++.++.+|..+..-....++.+. .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 81 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACV--A 81 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence 3568999995 466655544 458899999975 33333333333221 368889999987543222222211 1
Q ss_pred CCCCceEEEEcCC
Q 023240 214 SSSGFAKVVANIP 226 (285)
Q Consensus 214 ~~~~~D~Vv~n~P 226 (285)
..+..|.||.+..
T Consensus 82 ~~~~~d~vi~~ag 94 (249)
T PRK09135 82 AFGRLDALVNNAS 94 (249)
T ss_pred HcCCCCEEEECCC
Confidence 2345789988753
No 470
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=76.31 E-value=24 Score=30.46 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=45.3
Q ss_pred EEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+||=.| |+|.++..++ +.|.+|++++.+++-++....... .++.++.+|+.+..-....++.+. ...+..|
T Consensus 2 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~id 76 (248)
T PRK10538 2 IVLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLP--AEWRNID 76 (248)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence 345555 3445554444 448899999999876665544432 368888999877532222222211 1224678
Q ss_pred EEEEcC
Q 023240 220 KVVANI 225 (285)
Q Consensus 220 ~Vv~n~ 225 (285)
.+|.+.
T Consensus 77 ~vi~~a 82 (248)
T PRK10538 77 VLVNNA 82 (248)
T ss_pred EEEECC
Confidence 988763
No 471
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.28 E-value=19 Score=34.42 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccHHH--HHHHHhCCEEEEEeCCH-HHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGSLT--NVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t--~~la~~~~~V~giD~~~-~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
.+++|+=+|+|....+ ..+++.|++|+++|.+. +.++.....+... +++++.+|..+. ..+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~--------------~~~~ 68 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEE--------------FLEG 68 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchh--------------Hhhc
Confidence 3678888888763332 23344599999999974 3333322333322 467777776552 1245
Q ss_pred ceEEEEcCCCCCcHHHHHHhc
Q 023240 218 FAKVVANIPFNISTDVIKQLL 238 (285)
Q Consensus 218 ~D~Vv~n~P~~~~~~i~~~l~ 238 (285)
+|+||.++-.....+.+....
T Consensus 69 ~d~vv~~~g~~~~~~~~~~a~ 89 (450)
T PRK14106 69 VDLVVVSPGVPLDSPPVVQAH 89 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHH
Confidence 799988766555555554433
No 472
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.20 E-value=26 Score=30.49 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=47.5
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCEEEEEeCC-----------HHHHHHHHHHhhcCC-CeEEEEcccccccchh
Q 023240 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD-----------QHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (285)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~V~giD~~-----------~~~v~~a~~~~~~~~-~v~~~~gD~~~~~~~~ 203 (285)
++++||=.|++ .|. ++..+++.|++|+..+++ ........+.+...+ ++.++..|+.+..-..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 46789999984 444 344555668888876532 122223333333333 6788888887654322
Q ss_pred hhhhHHhhhcCCCCceEEEEcCC
Q 023240 204 HMLSLFERRKSSSGFAKVVANIP 226 (285)
Q Consensus 204 ~~~d~~~~~~~~~~~D~Vv~n~P 226 (285)
...+.+. ...+..|.+|.|.-
T Consensus 85 ~~~~~~~--~~~g~id~li~~ag 105 (256)
T PRK12859 85 ELLNKVT--EQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHH--HHcCCCcEEEECCC
Confidence 2233222 22356799998854
No 473
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.20 E-value=11 Score=34.59 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=35.7
Q ss_pred HhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Q 023240 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (285)
Q Consensus 136 ~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~V~giD~~~~~v~~a~~ 181 (285)
...+.++++||=.|+|. |..+..+|+. |.+|+++|.+++..+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34566788999999854 5566666665 7799999999998888865
No 474
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.07 E-value=2.7 Score=35.60 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=19.4
Q ss_pred cccHHH----HHHHHhCCEEEEEeCCHHHHHHHH
Q 023240 151 GTGSLT----NVLLNAGATVLAIEKDQHMVGLVR 180 (285)
Q Consensus 151 G~G~~t----~~la~~~~~V~giD~~~~~v~~a~ 180 (285)
|.|+.+ ..+|..|.+|+|+|++++.++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 455544 444556899999999999887766
No 475
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.93 E-value=9.7 Score=35.43 Aligned_cols=44 Identities=25% Similarity=0.473 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHh
Q 023240 140 QEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERF 183 (285)
Q Consensus 140 ~~~~~VLDiGcG-~G~~t~~la~~-~-~~V~giD~~~~~v~~a~~~~ 183 (285)
.++.+|+=+||| .|.++..+++. | .+|+++|.+++.++.|++..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 345599999999 47777777776 4 58999999999999999864
No 476
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.69 E-value=16 Score=32.08 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.++.||=.||..|.++-++++ .|+.|++.-.+-+-...+...+ .+....-|+.+-.--......+.+ ...+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~----gl~~~kLDV~~~~~V~~v~~evr~-~~~G 80 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF----GLKPYKLDVSKPEEVVTVSGEVRA-NPDG 80 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh----CCeeEEeccCChHHHHHHHHHHhh-CCCC
Confidence 467899999999998777765 4889999988755444444333 466666666553211111111111 3557
Q ss_pred CceEEEEc
Q 023240 217 GFAKVVAN 224 (285)
Q Consensus 217 ~~D~Vv~n 224 (285)
+.|+.+-|
T Consensus 81 kld~L~NN 88 (289)
T KOG1209|consen 81 KLDLLYNN 88 (289)
T ss_pred ceEEEEcC
Confidence 77888876
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.56 E-value=9.3 Score=36.49 Aligned_cols=69 Identities=12% Similarity=0.249 Sum_probs=45.5
Q ss_pred EEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+|+=+|+ |.++..+++ .+..|+.+|.+++.++.+++.. .++++.||+.+... ++. .....+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~----~~~~~~gd~~~~~~-------l~~-~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL----DVRTVVGNGSSPDV-------LRE-AGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc----CEEEEEeCCCCHHH-------HHH-cCCCcCC
Confidence 3555655 777777766 3789999999999888776532 57889999876431 111 2234567
Q ss_pred EEEEcCC
Q 023240 220 KVVANIP 226 (285)
Q Consensus 220 ~Vv~n~P 226 (285)
.|+.-.+
T Consensus 68 ~vi~~~~ 74 (453)
T PRK09496 68 LLIAVTD 74 (453)
T ss_pred EEEEecC
Confidence 7766544
No 478
>PRK05693 short chain dehydrogenase; Provisional
Probab=75.54 E-value=20 Score=31.50 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=44.1
Q ss_pred EEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
++|=.|+ +|.++.. +++.|.+|++++.+++.++.... .++.++.+|..+..-.....+.+. ...+..|
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~id 74 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGYEVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELE--AEHGGLD 74 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCCCC
Confidence 5666675 3444444 44458899999999876554432 246778888876432221222211 1235689
Q ss_pred EEEEcCC
Q 023240 220 KVVANIP 226 (285)
Q Consensus 220 ~Vv~n~P 226 (285)
++|.|.-
T Consensus 75 ~vi~~ag 81 (274)
T PRK05693 75 VLINNAG 81 (274)
T ss_pred EEEECCC
Confidence 9998754
No 479
>PRK06484 short chain dehydrogenase; Validated
Probab=75.26 E-value=18 Score=35.10 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++++|=.|++.|. ++..+++.|++|+.++.+++.++.+.+.+. .++.++..|+.+..-....++.+. ...+.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 79 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLH--REFGR 79 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence 46778888876653 344455568999999999887776655442 356778888876542222222221 12356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|++|.|.-
T Consensus 80 iD~li~nag 88 (520)
T PRK06484 80 IDVLVNNAG 88 (520)
T ss_pred CCEEEECCC
Confidence 899998843
No 480
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.91 E-value=19 Score=32.69 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC--C-CeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~--~-~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++.||==||-+|. ++..+++.|.+++-+-...+.++...+.+++. + ++.++.+|..+.......++++. ..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~--~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI--RH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH--Hh
Confidence 47788888886664 56667778988777777777766664444432 2 49999999999876655556654 35
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
-+..|++|.|--
T Consensus 89 fg~vDvLVNNAG 100 (282)
T KOG1205|consen 89 FGRVDVLVNNAG 100 (282)
T ss_pred cCCCCEEEecCc
Confidence 677899999843
No 481
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.81 E-value=8.5 Score=34.53 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEEcCcc--cHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Q 023240 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 144 ~VLDiGcG~--G~~t~~la~~~~~V~giD~~~~~v~~a~~~ 182 (285)
+|.=||+|. |.++..+++.|.+|+++|.+++.++.+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER 42 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 355577763 345555666688999999999888877653
No 482
>PRK07832 short chain dehydrogenase; Provisional
Probab=74.77 E-value=24 Score=31.01 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=45.8
Q ss_pred EEEEEcCcccHHHH----HHHHhCCEEEEEeCCHHHHHHHHHHhhcCC--CeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 144 IVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 144 ~VLDiGcG~G~~t~----~la~~~~~V~giD~~~~~v~~a~~~~~~~~--~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
++|=.|++ |.++. .+++.|++|+.++.+++..+.+.+.+...+ .+.++.+|+.+........+-+. ...+.
T Consensus 2 ~vlItGas-~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (272)
T PRK07832 2 RCFVTGAA-SGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIH--AAHGS 78 (272)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence 45556643 44444 345558899999999877766655544322 24556788876432222222221 22356
Q ss_pred ceEEEEcCC
Q 023240 218 FAKVVANIP 226 (285)
Q Consensus 218 ~D~Vv~n~P 226 (285)
.|.+|.|..
T Consensus 79 id~lv~~ag 87 (272)
T PRK07832 79 MDVVMNIAG 87 (272)
T ss_pred CCEEEECCC
Confidence 899998753
No 483
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.74 E-value=29 Score=29.88 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=47.2
Q ss_pred CEEEEEcCcccHHHHHHH----HhCCEEEEEeCC-HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 143 ~~VLDiGcG~G~~t~~la----~~~~~V~giD~~-~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++||=.| |+|.++..++ +.|.+|+.++.. +...+.....++.. .++.++.+|+.+..-.....+.+.. ..+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 79 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA--AWG 79 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH--hcC
Confidence 4577667 4666665554 458899999975 33333333444322 3788999999875432222222221 224
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|+||.|.
T Consensus 80 ~id~vi~~a 88 (256)
T PRK12745 80 RIDCLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 679998874
No 484
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=74.48 E-value=24 Score=36.01 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHHH----HHHhCCEEEEEeCCHHHHHHHHHHhhc---CCCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~----la~~~~~V~giD~~~~~v~~a~~~~~~---~~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
+++||=.|++ |.++.. +++.|++|+.++++.+..+.+...+.. .+++..+.+|+.+..-....++-+. ..
T Consensus 414 gkvvLVTGas-ggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~--~~ 490 (676)
T TIGR02632 414 RRVAFVTGGA-GGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA--LA 490 (676)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH--Hh
Confidence 5678888864 444444 444589999999998877666555432 1357788899877542222222111 22
Q ss_pred CCCceEEEEcCC
Q 023240 215 SSGFAKVVANIP 226 (285)
Q Consensus 215 ~~~~D~Vv~n~P 226 (285)
-+..|++|.|.-
T Consensus 491 ~g~iDilV~nAG 502 (676)
T TIGR02632 491 YGGVDIVVNNAG 502 (676)
T ss_pred cCCCcEEEECCC
Confidence 356899998754
No 485
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=74.24 E-value=29 Score=30.12 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=38.0
Q ss_pred EEEEEcCcccH---HHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEEccccccc
Q 023240 144 IVLEIGPGTGS---LTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (285)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~---~~v~~~~gD~~~~~ 200 (285)
.+|=.|++.|. ++..+++ .|.+|+.+..+++.++.+.+.+... .++.++..|+.+..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~ 68 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEA 68 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHH
Confidence 35556654433 3344554 4789999999988887776666531 26788888987754
No 486
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.17 E-value=30 Score=29.24 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
++++||=.|. +|.++..++ +.|++|++++.++.-.......... ..++++.+|+.+..-....++-+. ...+
T Consensus 6 ~~k~vlItGa-tg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (239)
T PRK12828 6 QGKVVAITGG-FGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVN--RQFG 81 (239)
T ss_pred CCCEEEEECC-CCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 3567887774 455555544 4588999999987654443333322 256778888876542222222211 1234
Q ss_pred CceEEEEcCC
Q 023240 217 GFAKVVANIP 226 (285)
Q Consensus 217 ~~D~Vv~n~P 226 (285)
..|.||.+..
T Consensus 82 ~~d~vi~~ag 91 (239)
T PRK12828 82 RLDALVNIAG 91 (239)
T ss_pred CcCEEEECCc
Confidence 6789888754
No 487
>PRK07775 short chain dehydrogenase; Provisional
Probab=74.16 E-value=33 Score=30.22 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=49.2
Q ss_pred CCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~ 216 (285)
.+++|=.|+ +|.++..+++ .|.+|+.+..+.+............ +++.++.+|+.+..-....++.+. ...+
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAE--EALG 86 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HhcC
Confidence 457888885 4666665554 4889999998876655554444322 367888889877543222222221 1234
Q ss_pred CceEEEEcC
Q 023240 217 GFAKVVANI 225 (285)
Q Consensus 217 ~~D~Vv~n~ 225 (285)
..|.+|.|.
T Consensus 87 ~id~vi~~A 95 (274)
T PRK07775 87 EIEVLVSGA 95 (274)
T ss_pred CCCEEEECC
Confidence 578888874
No 488
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.05 E-value=28 Score=29.79 Aligned_cols=81 Identities=10% Similarity=0.202 Sum_probs=47.2
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEE-eCCHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~gi-D~~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~~ 215 (285)
++++|=.|. +|.++..++ +.|.+|+.+ +.+.+..+.+.+.+... .++.++.+|+.+..-....++-+. ...
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID--EEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence 567887775 455555544 457787764 56666555554444332 368888899877542222222222 122
Q ss_pred CCceEEEEcC
Q 023240 216 SGFAKVVANI 225 (285)
Q Consensus 216 ~~~D~Vv~n~ 225 (285)
+..|++|.|.
T Consensus 81 ~~id~vi~~a 90 (250)
T PRK08063 81 GRLDVFVNNA 90 (250)
T ss_pred CCCCEEEECC
Confidence 4579999874
No 489
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.05 E-value=15 Score=34.58 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHh
Q 023240 141 EGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (285)
Q Consensus 141 ~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~ 183 (285)
++.+|+=+|+| .|..+...+.. |++|+.+|.+++..+.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 45678989887 45555555544 889999999988777666554
No 490
>PRK12827 short chain dehydrogenase; Provisional
Probab=74.01 E-value=32 Score=29.32 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCEEEEEeC----CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhh
Q 023240 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEK----DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR 212 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~V~giD~----~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~ 212 (285)
+.++|=.| |+|.++..+ ++.|.+|+.++. +++..+.+....... .++.++.+|+.+.......++.+.
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-- 82 (249)
T PRK12827 6 SRRVLITG-GSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV-- 82 (249)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--
Confidence 56788666 445555544 445889998775 344444444444332 378899999887643322222221
Q ss_pred cCCCCceEEEEcCC
Q 023240 213 KSSSGFAKVVANIP 226 (285)
Q Consensus 213 ~~~~~~D~Vv~n~P 226 (285)
...+..|.||.|..
T Consensus 83 ~~~~~~d~vi~~ag 96 (249)
T PRK12827 83 EEFGRLDILVNNAG 96 (249)
T ss_pred HHhCCCCEEEECCC
Confidence 12356789888743
No 491
>PRK08177 short chain dehydrogenase; Provisional
Probab=74.01 E-value=15 Score=31.15 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=44.4
Q ss_pred EEEEEcCcccHH----HHHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCce
Q 023240 144 IVLEIGPGTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (285)
Q Consensus 144 ~VLDiGcG~G~~----t~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D 219 (285)
+||=.|+ +|.+ +..+++.|.+|++++.++.-.+.++. .+++.+..+|+.+........+.+ ....+|
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~----~~~~id 73 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLDQLLQRL----QGQRFD 73 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHHHHHHHh----hcCCCC
Confidence 5666665 4444 44455568899999998765544332 246777888887654332223322 224689
Q ss_pred EEEEcC
Q 023240 220 KVVANI 225 (285)
Q Consensus 220 ~Vv~n~ 225 (285)
.||.|.
T Consensus 74 ~vi~~a 79 (225)
T PRK08177 74 LLFVNA 79 (225)
T ss_pred EEEEcC
Confidence 999874
No 492
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=74.00 E-value=15 Score=33.66 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHH
Q 023240 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (285)
Q Consensus 135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~ 182 (285)
....+.++++||=.|+| .|..+..+|+. |++|++++.+++-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 34566778899999875 34445556655 78999999999888888764
No 493
>PRK08263 short chain dehydrogenase; Provisional
Probab=73.95 E-value=30 Score=30.44 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCC
Q 023240 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (285)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~ 217 (285)
+++||=.|+ +|.++..++ +.|.+|+.++.+++.++....... +.+.++.+|+.+..-.....+-+. ...+.
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 77 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKYG--DRLLPLALDVTDRAAVFAAVETAV--EHFGR 77 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcc--CCeeEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 356787784 555555554 458899999999887665554432 367788888876432211111111 12356
Q ss_pred ceEEEEcC
Q 023240 218 FAKVVANI 225 (285)
Q Consensus 218 ~D~Vv~n~ 225 (285)
+|.||.+.
T Consensus 78 ~d~vi~~a 85 (275)
T PRK08263 78 LDIVVNNA 85 (275)
T ss_pred CCEEEECC
Confidence 79998874
No 494
>PRK08309 short chain dehydrogenase; Provisional
Probab=73.90 E-value=46 Score=27.77 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=51.2
Q ss_pred EEEEEcCcccHHH---HHHHHhCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEcccccccchhhhhhHHhhhcCCCCceE
Q 023240 144 IVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (285)
Q Consensus 144 ~VLDiGcG~G~~t---~~la~~~~~V~giD~~~~~v~~a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~~~~~~D~ 220 (285)
+++=.|. +|... ..|++.|.+|+.++.+++..+..+......+++.++.+|+.+..-....++-.. ...+..|.
T Consensus 2 ~vlVtGG-tG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l--~~~g~id~ 78 (177)
T PRK08309 2 HALVIGG-TGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI--EKNGPFDL 78 (177)
T ss_pred EEEEECc-CHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCCCeE
Confidence 4566663 45543 334445889999999987766655544333478888888877543222222211 23456788
Q ss_pred EEEcCCCCCcHHHHH
Q 023240 221 VVANIPFNISTDVIK 235 (285)
Q Consensus 221 Vv~n~P~~~~~~i~~ 235 (285)
+|...-...+..+..
T Consensus 79 lv~~vh~~~~~~~~~ 93 (177)
T PRK08309 79 AVAWIHSSAKDALSV 93 (177)
T ss_pred EEEeccccchhhHHH
Confidence 887655444444443
No 495
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=73.73 E-value=34 Score=30.64 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~V~giD~~~~~v~~a~~~~~~~----~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.++.+|--|.+.|. .+..+++.|++|+..+++++.++.++...... +++..+..|..+.+-.....+... .
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~--~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV--E 84 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH--H
Confidence 46778887776554 56777888999999999999888777665432 368889999876543222222211 2
Q ss_pred C-CCCceEEEEcC
Q 023240 214 S-SSGFAKVVANI 225 (285)
Q Consensus 214 ~-~~~~D~Vv~n~ 225 (285)
. .++.|++|.|.
T Consensus 85 ~~~GkidiLvnna 97 (270)
T KOG0725|consen 85 KFFGKIDILVNNA 97 (270)
T ss_pred HhCCCCCEEEEcC
Confidence 3 57889999874
No 496
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=73.50 E-value=19 Score=34.03 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=47.7
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCCHHHHHH---HHHHhhcCCCeEEEEcccccccchhhhhhHHhhhc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~~~~v~~---a~~~~~~~~~v~~~~gD~~~~~~~~~~~d~~~~~~ 213 (285)
.+.+||=+| |+|+++..+++ .|.+|++++.++..... ........++++++.+|+.+.... ...++.
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l---~~~~~~-- 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSL---RKVLFS-- 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHH---HHHHHH--
Confidence 467899888 78888777654 47899999988654321 111111224789999999875321 112210
Q ss_pred CCCCceEEEEc
Q 023240 214 SSSGFAKVVAN 224 (285)
Q Consensus 214 ~~~~~D~Vv~n 224 (285)
....+|.||.+
T Consensus 133 ~~~~~D~Vi~~ 143 (390)
T PLN02657 133 EGDPVDVVVSC 143 (390)
T ss_pred hCCCCcEEEEC
Confidence 01157888865
No 497
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=72.83 E-value=16 Score=32.89 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHhh---cCCCeEEEEccccccc
Q 023240 141 EGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCH 200 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~----~~~V~giD~~~~~v~~a~~~~~---~~~~v~~~~gD~~~~~ 200 (285)
.+++||=.| |+|+++..+++. |.+|++++.+............ ..++++++.+|+.+..
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcc
Confidence 356788777 478887777653 7899998877543222221111 1247899999998753
No 498
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.76 E-value=23 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=37.4
Q ss_pred HhcCCCCCEEEEEcC--cccHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHh
Q 023240 136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (285)
Q Consensus 136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~V~giD~~~~~v~~a~~~~ 183 (285)
...+.++++||=.|+ |.|..+..+|+. |.+|++++.+++-.+.+++.+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l 196 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL 196 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Confidence 345678899998886 567777777776 889999999988888887644
No 499
>PRK09134 short chain dehydrogenase; Provisional
Probab=72.65 E-value=34 Score=29.66 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCEEEEEeC-CHHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhhhcC
Q 023240 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~V~giD~-~~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~~~~ 214 (285)
.++++|=.|++ |.++..++ +.|.+|+.++. +.+..+.+...+... .++.++.+|+.+..-....++.+. ..
T Consensus 8 ~~k~vlItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~ 84 (258)
T PRK09134 8 APRAALVTGAA-RRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARAS--AA 84 (258)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 35678888854 55555544 45788887765 444444444443322 368889999887543222232222 12
Q ss_pred CCCceEEEEcC
Q 023240 215 SSGFAKVVANI 225 (285)
Q Consensus 215 ~~~~D~Vv~n~ 225 (285)
.+..|+||.|.
T Consensus 85 ~~~iD~vi~~a 95 (258)
T PRK09134 85 LGPITLLVNNA 95 (258)
T ss_pred cCCCCEEEECC
Confidence 35689999885
No 500
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.55 E-value=28 Score=30.19 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCEEEEEeCC----HHHHHHHHHHhhcC-CCeEEEEcccccccchhhhhhHHhh
Q 023240 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKD----QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER 211 (285)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~V~giD~~----~~~v~~a~~~~~~~-~~v~~~~gD~~~~~~~~~~~d~~~~ 211 (285)
.++++|=.|+ +|.++..+++ .|.+|+.+..+ .+..+...+.+... .++.++..|+.+..-....++.+.
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~- 84 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK- 84 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH-
Confidence 3568888885 4455555544 47887777643 33333333333322 368888999877543222222221
Q ss_pred hcCCCCceEEEEcC
Q 023240 212 RKSSSGFAKVVANI 225 (285)
Q Consensus 212 ~~~~~~~D~Vv~n~ 225 (285)
...+..|.+|.|.
T Consensus 85 -~~~~~id~li~~a 97 (257)
T PRK12744 85 -AAFGRPDIAINTV 97 (257)
T ss_pred -HhhCCCCEEEECC
Confidence 2235689998874
Done!