Query 023242
Match_columns 285
No_of_seqs 259 out of 1348
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 3E-42 6.4E-47 306.8 16.2 177 73-284 1-194 (194)
2 KOG0721 Molecular chaperone (D 99.8 1.6E-21 3.4E-26 175.7 3.7 154 5-173 43-205 (230)
3 COG0484 DnaJ DnaJ-class molecu 99.6 2.4E-15 5.2E-20 145.5 6.4 68 61-130 1-74 (371)
4 KOG0713 Molecular chaperone (D 99.4 7.5E-14 1.6E-18 132.9 5.6 65 61-127 13-83 (336)
5 PTZ00037 DnaJ_C chaperone prot 99.4 1.9E-13 4.1E-18 134.6 5.9 68 59-128 23-92 (421)
6 PRK14296 chaperone protein Dna 99.4 4.1E-13 9E-18 130.0 6.5 66 61-128 1-71 (372)
7 PRK14288 chaperone protein Dna 99.4 6.2E-13 1.3E-17 128.6 5.9 64 63-128 2-71 (369)
8 PRK14286 chaperone protein Dna 99.3 2.2E-12 4.7E-17 125.0 6.2 66 61-128 1-72 (372)
9 PRK14287 chaperone protein Dna 99.3 2.8E-12 6.1E-17 124.1 6.3 66 61-128 1-71 (371)
10 PRK14299 chaperone protein Dna 99.3 3.8E-12 8.3E-17 119.4 6.5 66 61-128 1-71 (291)
11 PRK14276 chaperone protein Dna 99.3 3.6E-12 7.7E-17 123.7 6.4 66 61-128 1-71 (380)
12 PRK14279 chaperone protein Dna 99.3 2.7E-12 5.9E-17 125.1 5.4 63 63-127 8-76 (392)
13 PRK14282 chaperone protein Dna 99.3 4.3E-12 9.4E-17 122.6 6.7 66 61-128 1-73 (369)
14 COG5407 SEC63 Preprotein trans 99.3 5.9E-12 1.3E-16 124.0 5.7 103 62-173 96-209 (610)
15 PRK14283 chaperone protein Dna 99.2 6.6E-12 1.4E-16 121.7 5.9 65 61-127 2-71 (378)
16 PRK14280 chaperone protein Dna 99.2 8.1E-12 1.8E-16 121.0 6.3 66 61-128 1-71 (376)
17 PRK14278 chaperone protein Dna 99.2 1.1E-11 2.4E-16 120.2 6.6 62 64-127 3-69 (378)
18 PRK14294 chaperone protein Dna 99.2 1.1E-11 2.3E-16 119.8 6.3 66 61-128 1-72 (366)
19 PRK14277 chaperone protein Dna 99.2 1.2E-11 2.6E-16 120.3 6.3 64 63-128 4-73 (386)
20 PRK14301 chaperone protein Dna 99.2 1.3E-11 2.9E-16 119.5 6.5 66 61-128 1-72 (373)
21 PRK14297 chaperone protein Dna 99.2 1.3E-11 2.9E-16 119.6 6.6 66 61-128 1-72 (380)
22 PRK10767 chaperone protein Dna 99.2 1.3E-11 2.9E-16 119.1 6.5 66 61-128 1-72 (371)
23 PRK14298 chaperone protein Dna 99.2 1.3E-11 2.7E-16 119.9 6.4 63 63-127 4-71 (377)
24 PRK14285 chaperone protein Dna 99.2 1.3E-11 2.9E-16 119.2 5.9 64 63-128 2-71 (365)
25 PF00226 DnaJ: DnaJ domain; I 99.2 2.8E-11 6.2E-16 88.2 5.8 56 65-120 1-63 (64)
26 KOG0712 Molecular chaperone (D 99.2 1.8E-11 3.8E-16 117.5 5.9 64 62-127 2-68 (337)
27 PRK14295 chaperone protein Dna 99.2 2.1E-11 4.5E-16 118.9 6.1 63 63-127 8-80 (389)
28 PRK14291 chaperone protein Dna 99.2 2.4E-11 5.2E-16 118.0 6.4 64 63-128 2-70 (382)
29 smart00271 DnaJ DnaJ molecular 99.2 3.8E-11 8.2E-16 86.1 5.4 51 64-114 1-58 (60)
30 PRK14300 chaperone protein Dna 99.2 3.4E-11 7.5E-16 116.5 6.2 63 64-128 3-70 (372)
31 PRK14281 chaperone protein Dna 99.2 4.1E-11 8.9E-16 117.0 6.5 64 63-128 2-71 (397)
32 PHA03102 Small T antigen; Revi 99.2 3.7E-11 8E-16 104.0 5.4 63 64-128 5-71 (153)
33 PRK14284 chaperone protein Dna 99.2 3.8E-11 8.3E-16 116.9 6.1 63 64-128 1-69 (391)
34 PTZ00100 DnaJ chaperone protei 99.2 3.6E-11 7.8E-16 99.8 5.0 56 57-112 58-115 (116)
35 PRK10266 curved DNA-binding pr 99.1 4E-11 8.7E-16 113.1 5.8 65 61-127 1-70 (306)
36 cd06257 DnaJ DnaJ domain or J- 99.1 6.6E-11 1.4E-15 83.2 5.5 49 65-113 1-55 (55)
37 PRK14289 chaperone protein Dna 99.1 6.5E-11 1.4E-15 115.0 6.0 66 61-128 2-73 (386)
38 KOG0715 Molecular chaperone (D 99.1 8.8E-11 1.9E-15 110.6 5.8 66 61-128 40-110 (288)
39 TIGR02349 DnaJ_bact chaperone 99.1 1.1E-10 2.3E-15 112.1 6.2 62 65-128 1-67 (354)
40 PRK14290 chaperone protein Dna 99.1 1.1E-10 2.3E-15 112.8 6.2 63 64-128 3-72 (365)
41 KOG0716 Molecular chaperone (D 99.1 1.4E-10 3.1E-15 108.0 5.6 78 59-138 26-109 (279)
42 PRK14292 chaperone protein Dna 99.1 1.5E-10 3.2E-15 111.9 5.9 63 64-128 2-69 (371)
43 PRK14293 chaperone protein Dna 99.1 2.1E-10 4.7E-15 111.0 6.3 63 64-128 3-70 (374)
44 KOG0718 Molecular chaperone (D 99.0 5.8E-10 1.3E-14 110.4 5.1 66 61-128 6-80 (546)
45 KOG0719 Molecular chaperone (D 98.9 1.4E-09 3E-14 99.9 5.9 65 63-129 13-85 (264)
46 PTZ00341 Ring-infected erythro 98.9 1.6E-09 3.5E-14 115.0 7.2 67 60-128 569-640 (1136)
47 KOG0691 Molecular chaperone (D 98.9 1.3E-09 2.8E-14 103.3 5.1 68 63-132 4-77 (296)
48 KOG0717 Molecular chaperone (D 98.9 2.2E-09 4.8E-14 106.2 5.3 60 62-121 6-72 (508)
49 PRK09430 djlA Dna-J like membr 98.8 2.2E-09 4.8E-14 100.1 4.5 56 60-115 196-264 (267)
50 COG2214 CbpA DnaJ-class molecu 98.8 6.1E-09 1.3E-13 88.7 5.8 60 62-121 4-70 (237)
51 TIGR03835 termin_org_DnaJ term 98.7 1.9E-08 4.1E-13 104.9 6.3 62 64-127 2-68 (871)
52 PHA02624 large T antigen; Prov 98.7 1.4E-08 3E-13 104.2 5.1 58 63-120 10-71 (647)
53 KOG0720 Molecular chaperone (D 98.5 1.4E-07 3.1E-12 93.5 5.3 62 59-122 230-296 (490)
54 PRK05014 hscB co-chaperone Hsc 98.3 1.1E-06 2.4E-11 77.1 6.0 58 64-121 1-71 (171)
55 KOG0624 dsRNA-activated protei 98.2 1.3E-06 2.8E-11 85.0 4.8 56 62-117 392-456 (504)
56 PRK01356 hscB co-chaperone Hsc 98.2 4.1E-06 8.9E-11 73.3 6.5 58 64-121 2-70 (166)
57 PRK00294 hscB co-chaperone Hsc 98.1 6.4E-06 1.4E-10 72.7 6.6 61 61-121 1-74 (173)
58 KOG0550 Molecular chaperone (D 98.1 1.9E-06 4.2E-11 85.0 3.6 60 63-122 372-438 (486)
59 KOG0714 Molecular chaperone (D 98.1 2.6E-06 5.6E-11 76.3 3.8 63 63-127 2-71 (306)
60 PRK03578 hscB co-chaperone Hsc 98.1 7E-06 1.5E-10 72.6 6.4 59 63-121 5-76 (176)
61 KOG0723 Molecular chaperone (D 98.1 4.3E-06 9.2E-11 68.7 4.3 57 59-115 51-109 (112)
62 KOG0722 Molecular chaperone (D 97.9 3.7E-06 8E-11 78.7 2.0 59 63-121 32-95 (329)
63 KOG1150 Predicted molecular ch 97.9 1.7E-05 3.7E-10 72.0 5.7 61 61-121 50-117 (250)
64 KOG1789 Endocytosis protein RM 97.0 0.0011 2.4E-08 72.0 5.8 61 55-115 1272-1339(2235)
65 KOG0568 Molecular chaperone (D 96.9 0.0012 2.6E-08 61.5 4.6 55 64-118 47-106 (342)
66 PRK01773 hscB co-chaperone Hsc 96.7 0.0038 8.3E-08 55.2 6.3 65 64-128 2-79 (173)
67 PF03656 Pam16: Pam16; InterP 96.2 0.003 6.6E-08 53.5 2.4 61 60-121 54-116 (127)
68 COG1076 DjlA DnaJ-domain-conta 96.2 0.0043 9.4E-08 54.4 3.4 46 64-111 113-173 (174)
69 PF13446 RPT: A repeated domai 96.1 0.0062 1.3E-07 44.6 3.3 50 61-115 2-51 (62)
70 TIGR00714 hscB Fe-S protein as 95.7 0.021 4.5E-07 49.6 5.3 46 76-121 3-59 (157)
71 COG5269 ZUO1 Ribosome-associat 95.1 0.036 7.7E-07 52.9 5.4 60 62-121 41-111 (379)
72 COG4858 Uncharacterized membra 93.6 3.6 7.7E-05 37.6 14.3 85 93-186 34-131 (226)
73 PF06570 DUF1129: Protein of u 91.3 7.1 0.00015 34.9 13.4 21 95-115 22-42 (206)
74 KOG3442 Uncharacterized conser 73.7 3.3 7.2E-05 35.3 2.9 54 59-112 54-109 (132)
75 KOG4452 Predicted membrane pro 68.0 9.4 0.0002 29.5 4.0 68 195-284 4-71 (79)
76 PF05251 UPF0197: Uncharacteri 65.0 22 0.00048 27.9 5.6 66 196-283 3-68 (77)
77 PF05884 ZYG-11_interact: Inte 61.9 1.5E+02 0.0033 28.8 11.8 54 69-122 21-76 (299)
78 COG4591 LolE ABC-type transpor 58.5 23 0.00051 35.4 6.0 59 225-284 325-391 (408)
79 PF10762 DUF2583: Protein of u 54.2 42 0.00091 26.9 5.6 38 239-281 23-60 (89)
80 PRK06231 F0F1 ATP synthase sub 53.2 27 0.00059 31.5 5.1 58 222-283 5-67 (205)
81 PRK10692 hypothetical protein; 51.4 50 0.0011 26.6 5.7 38 239-281 23-60 (92)
82 COG4709 Predicted membrane pro 47.1 2.3E+02 0.005 26.0 10.1 16 225-240 118-133 (195)
83 PF11947 DUF3464: Protein of u 45.7 56 0.0012 28.7 5.7 50 220-276 60-109 (153)
84 KOG0431 Auxilin-like protein a 45.4 28 0.00061 35.4 4.3 24 67-90 391-414 (453)
85 PF05767 Pox_A14: Poxvirus vir 41.0 74 0.0016 25.8 5.2 49 182-246 19-68 (92)
86 TIGR02359 thiW thiW protein. L 39.5 2.6E+02 0.0057 24.5 9.5 19 225-243 93-112 (160)
87 PF10731 Anophelin: Thrombin i 39.2 48 0.001 25.0 3.6 22 193-214 18-39 (65)
88 PF11085 YqhR: Conserved membr 38.5 1.2E+02 0.0027 27.2 6.7 24 257-280 123-146 (173)
89 PF10507 DUF2453: Protein of u 37.1 28 0.0006 29.1 2.3 47 187-238 56-102 (111)
90 PRK11427 multidrug efflux syst 37.0 2E+02 0.0044 31.0 9.2 45 151-198 26-70 (683)
91 PF01102 Glycophorin_A: Glycop 36.8 55 0.0012 27.7 4.1 13 159-171 66-78 (122)
92 PF13807 GNVR: G-rich domain o 36.8 65 0.0014 24.4 4.2 19 224-242 59-77 (82)
93 PF07629 DUF1590: Protein of u 35.8 17 0.00036 23.6 0.6 16 6-21 2-17 (32)
94 PF03820 Mtc: Tricarboxylate c 34.5 4.4E+02 0.0095 25.6 13.4 49 187-238 176-224 (308)
95 TIGR00845 caca sodium/calcium 34.4 1.1E+02 0.0024 34.1 6.9 31 141-173 57-87 (928)
96 PF01864 DUF46: Putative integ 34.0 45 0.00097 29.8 3.3 12 216-227 34-45 (175)
97 PHA02680 ORF090 IMV phosphoryl 33.1 1.4E+02 0.0031 24.0 5.6 49 183-246 20-69 (91)
98 COG3965 Predicted Co/Zn/Cd cat 33.0 3.7E+02 0.0081 26.1 9.3 53 187-247 138-190 (314)
99 PF07709 SRR: Seven Residue Re 32.8 25 0.00054 18.7 0.9 12 100-111 2-13 (14)
100 PHA02898 virion envelope prote 32.8 99 0.0022 25.0 4.7 38 183-236 20-57 (92)
101 PF07787 DUF1625: Protein of u 30.2 1.5E+02 0.0033 27.2 6.2 40 218-258 181-220 (248)
102 PF10041 DUF2277: Uncharacteri 30.1 1.7E+02 0.0037 23.0 5.5 45 69-113 8-61 (78)
103 PRK11677 hypothetical protein; 30.0 50 0.0011 28.3 2.8 18 225-242 4-21 (134)
104 PHA03048 IMV membrane protein; 29.8 1.5E+02 0.0033 24.0 5.3 47 183-246 20-67 (93)
105 COG3597 Uncharacterized protei 29.6 2.2E+02 0.0048 24.7 6.6 27 251-284 82-108 (139)
106 COG2851 CitM H+/citrate sympor 29.2 3E+02 0.0066 28.0 8.4 109 154-276 230-340 (433)
107 PF04120 Iron_permease: Low af 28.6 89 0.0019 26.7 4.1 14 268-281 48-61 (132)
108 COG1055 ArsB Na+/H+ antiporter 25.7 3.2E+02 0.0069 27.7 8.0 75 187-282 190-264 (424)
109 COG5552 Uncharacterized conser 25.2 1.8E+02 0.004 23.0 4.9 24 67-90 6-29 (88)
110 KOG1866 Ubiquitin carboxyl-ter 24.5 20 0.00044 38.9 -0.7 28 5-33 263-290 (944)
111 PF04156 IncA: IncA protein; 24.1 1.1E+02 0.0023 26.5 3.9 13 224-236 5-17 (191)
112 PF11998 DUF3493: Protein of u 23.7 2.3E+02 0.005 22.1 5.2 51 224-279 21-71 (75)
113 PF12732 YtxH: YtxH-like prote 23.3 74 0.0016 23.8 2.4 15 228-242 2-16 (74)
114 PRK11146 outer membrane-specif 22.2 1.7E+02 0.0036 28.3 5.2 18 225-242 323-340 (412)
115 COG3088 CcmH Uncharacterized p 22.2 21 0.00045 31.4 -0.9 15 3-17 39-53 (153)
116 PF11460 DUF3007: Protein of u 21.6 93 0.002 25.8 2.8 24 98-121 65-88 (104)
117 PF06570 DUF1129: Protein of u 21.5 5.8E+02 0.013 22.6 9.6 52 221-280 146-197 (206)
118 PF12725 DUF3810: Protein of u 21.2 2E+02 0.0043 27.8 5.4 53 63-115 81-150 (318)
119 PF12645 HTH_16: Helix-turn-he 21.0 1.7E+02 0.0036 21.8 3.9 34 94-128 8-41 (65)
120 TIGR02212 lolCE lipoprotein re 20.9 2.2E+02 0.0048 27.0 5.7 18 225-242 322-339 (411)
121 PRK10263 DNA translocase FtsK; 20.4 3.3E+02 0.0071 31.8 7.5 11 222-232 113-123 (1355)
122 PF06295 DUF1043: Protein of u 20.2 74 0.0016 26.6 2.0 16 227-242 2-17 (128)
123 COG3105 Uncharacterized protei 20.2 1E+02 0.0022 26.7 2.8 18 225-242 9-26 (138)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=3e-42 Score=306.76 Aligned_cols=177 Identities=32% Similarity=0.455 Sum_probs=154.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCcccccchhcccc-----------CC
Q 023242 73 NPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK-----------QP 141 (285)
Q Consensus 73 ~~~AS~eEIk~AYRrl~l~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v~~~ir~ad~-----------~~ 141 (285)
++|||||||++|+. .+.++|+||++..++||+|||+|+|++||+||+ ||+++++++||+|+ .+
T Consensus 1 S~~ASfeEIq~Arn--~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~----Gki~v~~~ir~ad~~~~~~~~~~~~~~ 74 (194)
T PF11833_consen 1 SEDASFEEIQAARN--RLLAQYAGDEKSREAIEAAYDAILMERLRQRQK----GKIKVPERIRYADREEPKPPNPKPSNP 74 (194)
T ss_pred CCCCCHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc----CCCCccHHHHHhhhccccccCCCCCCc
Confidence 68999999999954 444568999999999999999999999999999 79999999999998 35
Q ss_pred CCCCCcc----ccCCChhHHHHHHHHHHHHHHHhhccCCCCchHHHHHH--HHHHHHHHhhhccCCCCCCCCCCCCCCcc
Q 023242 142 IFPWGPR----FAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLA--FAFVYRFFEKLKSFEPAVSPTYTEEGDDD 215 (285)
Q Consensus 142 ~~pW~~r----~~~Ps~~~i~~~~~~~~~l~~~~~~~~~~~~~~l~~l~--~a~vyfl~~K~~~~~p~~~~~~~~~~~~~ 215 (285)
.++|++| +.+|+.+++.+++++|++|++|+++.+.++.+++++++ ++||||+|+|++++
T Consensus 75 ~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~--------------- 139 (194)
T PF11833_consen 75 SPPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKL--------------- 139 (194)
T ss_pred cchHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchH---------------
Confidence 5679998 57999999999999999999999997555555565444 88999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHHHhhcC
Q 023242 216 GRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY 284 (285)
Q Consensus 216 gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~sfl 284 (285)
|||+ ++++++|++||++|++|. +|++ ...+|..+ +.|+++|+++|++||++|+||
T Consensus 140 ~rA~-----~~~~~~L~~G~~lGs~l~--~~l~-----~~~~p~~~--s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 140 GRAF-----LWTLGGLVVGLILGSLLA--SWLP-----VDIVPGPW--SPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHH--hhcc-----cccCCCCC--CHHHHHHHHHHHHHHHHHhcC
Confidence 9999 999999999999999998 7874 22334222 789999999999999999997
No 2
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-21 Score=175.75 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=117.5
Q ss_pred ccccccCCcchHhhhhcccccccCCCCccc--cccc-ccccchhhhhhhhhccCCCCCCCCCCCcccccCCCCCCCHHHH
Q 023242 5 VSNVFHCPKAEVSLRNFNSRASISRFPPSF--VRFP-RAVSWDRSVTCAAASATGSSNSDSELNPYEVLGVNPIEGFDMV 81 (285)
Q Consensus 5 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~--~r~p-~~~~W~~~~~~~a~~~~g~~~~~~~~dpYevLGV~~~AS~eEI 81 (285)
-.+.|+|.-|+.+|++.+ ...|.+| .|.- ..+.|--.+- ...--.+....+...||||||||+++||+.||
T Consensus 43 ~~~~c~c~~c~~~r~~~~-----~~~~k~~~~~~~i~lv~~W~v~~f-L~y~i~~~~~~~~~fDPyEILGl~pgas~~eI 116 (230)
T KOG0721|consen 43 RKEECQCHGCDKKRRKKA-----KVSPKSISTKRKVFLVVGWAVIAF-LIYKIMNSRRERQKFDPYEILGLDPGASEKEI 116 (230)
T ss_pred hhhHHhhhhhhhhhhhhc-----ccCcccchhHHHHHHHHHHHHHHH-HHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHH
Confidence 357899999999988655 2222222 2222 2344521110 11112333356778999999999999999999
Q ss_pred HHHHHHHhh--hhcC----CCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCcccccchhccccCCCCCCCccccCCChh
Q 023242 82 KAVYAKKRK--EAER----NNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQ 155 (285)
Q Consensus 82 k~AYRrl~l--~~~~----~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v~~~ir~ad~~~~~pW~~r~~~Ps~~ 155 (285)
|+|||++.+ |+|. ++||+.+++|++||..|+|+. .|++++.||+++++++.+++. .+|.|+. +.+
T Consensus 117 KkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~--sreN~ekYG~PDGpq~~s~GI--ALPk~Iv-----d~~ 187 (230)
T KOG0721|consen 117 KKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKK--SRENWEKYGNPDGPQATSFGI--ALPKWIV-----DKE 187 (230)
T ss_pred HHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchh--hHHHHHHhCCCCCccchhhHh--hhHHHHH-----hcC
Confidence 999999999 4444 678999999999999999998 999999999999999999987 8889998 677
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 023242 156 DIRINLAISAAFTAWIAI 173 (285)
Q Consensus 156 ~i~~~~~~~~~l~~~~~~ 173 (285)
...+.+++|+++++.+++
T Consensus 188 ~s~~vl~~y~l~f~vilp 205 (230)
T KOG0721|consen 188 GSPGVLGFYGLVFGVILP 205 (230)
T ss_pred CCchHHHHHHHHHHhHhH
Confidence 778888999988887766
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-15 Score=145.45 Aligned_cols=68 Identities=28% Similarity=0.380 Sum_probs=58.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC----CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCccc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN----NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKV 130 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~----gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v 130 (285)
|...|+||+|||+++||.+|||+|||||++. +|.+ +.+++|++|++|||+|+|++ +|+.+|.||....
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~e--KRa~YD~fG~~~~ 74 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE--KRAAYDQFGHAGF 74 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHH--HHHHhhccCcccc
Confidence 5678999999999999999999999999994 3322 24899999999999999999 7778888887643
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.5e-14 Score=132.94 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-Cc---HHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-ND---EATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-gd---e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
...+|+|++|||+.+||++|||+|||||++. +|.+ +| .++|++|+.|||+|+|+. +|+.+++||.
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpe--kRk~YD~~GE 83 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPE--KRKHYDTYGE 83 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHhhhH
Confidence 4569999999999999999999999999994 4333 22 789999999999999999 6777767663
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.41 E-value=1.9e-13 Score=134.56 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=59.2
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 59 NSDSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 59 ~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|...|+|++|||+++||.+|||+|||++++ |+|.++|+++|++|++|||+|+|+. +|+.++.||..
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~--kR~~YD~~G~~ 92 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPE--KRKIYDEYGEE 92 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHH--HHHHHhhhcch
Confidence 45667899999999999999999999999999 4555667899999999999999998 67777777764
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.1e-13 Score=129.99 Aligned_cols=66 Identities=27% Similarity=0.379 Sum_probs=55.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.+ +.+++|++|++|||+|+|++ +|+.+|.||..
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~--KR~~YD~~G~~ 71 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD--KRKQYDQFGHA 71 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHH--Hhhhhhhccch
Confidence 5568999999999999999999999999983 3322 24799999999999999998 67777777753
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=6.2e-13 Score=128.57 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=54.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|++ +|+.+|.||..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~--kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEK--KRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHH--HHHHHHHhccc
Confidence 47999999999999999999999999993 43322 3689999999999999998 66677777753
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=2.2e-12 Score=124.95 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=55.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|.+.|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|++ +|+.+|.||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kR~~YD~~G~~ 72 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK--KRQAYDQFGKA 72 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHH--HHHHHHHhCch
Confidence 5568999999999999999999999999993 43322 3689999999999999998 56666677753
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=2.8e-12 Score=124.11 Aligned_cols=66 Identities=33% Similarity=0.430 Sum_probs=54.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.+ ..+++|++|++|||+|+|+. +|+.+|.||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~--kR~~YD~~G~~ 71 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ--KKAHYDQFGHT 71 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHh--HHHHHHhhCCc
Confidence 4567999999999999999999999999994 3332 23689999999999999998 66666677753
No 10
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=3.8e-12 Score=119.37 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.. ..+++|++|++|||+|+|++ +|+.++.||..
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~--kr~~yD~~g~~ 71 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE--KRRIYDTYGTT 71 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHH--HHHHHHhcCCc
Confidence 4568999999999999999999999999994 3333 23789999999999999998 66666677754
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=3.6e-12 Score=123.68 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=55.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|.+.|+|++|||+++||.+|||+|||++++. +|.. ..+++|++|++|||+|+|++ +|+.++.||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~--kR~~YD~~G~~ 71 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQ--KRAAYDQYGAA 71 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHh--hhhhHhhcCCc
Confidence 4568999999999999999999999999984 3332 23789999999999999998 66777777753
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=2.7e-12 Score=125.10 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
..|+|++|||+++||.+|||+||||+++. +|..+ .+++|++|++|||+|+|++ +|+.+|.||.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~--KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA--KRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchh--hhhHHHHhhh
Confidence 58999999999999999999999999993 44332 2699999999999999998 6777777764
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=4.3e-12 Score=122.58 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=54.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.. + .+++|++|++|||+|+|+. +|+.+|.||..
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~--kR~~YD~~g~~ 73 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ--KRAMYDRFGYV 73 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChh--hHHHHhhcCcc
Confidence 4568999999999999999999999999994 3332 1 2689999999999999998 66666677753
No 14
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.25 E-value=5.9e-12 Score=124.03 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=79.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----c-----HHHHHHHHHHHHHhhcHHHHhhhhccCCCCccc
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----D-----EATAARLEKAYDKLMMEQLSKRKKGVTFGSFKV 130 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----d-----e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v 130 (285)
...||||+|||+.++|++|||++||++.+. +++.. + |++..+|++||+.|+|+. .|+++-.||.+++
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k--~renyl~yGtPd~ 173 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK--RRENYLNYGTPDS 173 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHhcCCCCC
Confidence 358999999999999999999999999983 22211 1 789999999999999987 8999999999999
Q ss_pred ccchhccccCCCCCCCccccCCChhHHHHHHHHHHHHHHHhhc
Q 023242 131 SKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAI 173 (285)
Q Consensus 131 ~~~ir~ad~~~~~pW~~r~~~Ps~~~i~~~~~~~~~l~~~~~~ 173 (285)
|+.+.-.. .+|.|+.+-+. .+...+.|+++.++.++
T Consensus 174 pQhts~gI--AlPk~iv~se~-----s~y~~v~Y~lllGv~LP 209 (610)
T COG5407 174 PQHTSEGI--ALPKVIVRSER-----SMYAFVMYSLLLGVFLP 209 (610)
T ss_pred Ccccccee--ecchheecCCC-----CceeHHHHHHHHHHHHH
Confidence 98876554 77888885433 34445566655554443
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=6.6e-12 Score=121.66 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=54.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
|.+.|+|++|||+++||.+|||+|||++++. +|.+ +++++|++|++|||+|+|+. +|+.+|.||.
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~--kR~~YD~~G~ 71 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDE--KRQRYDQFGH 71 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhH--HHHHHhhhcc
Confidence 4578999999999999999999999999994 3332 34799999999999999998 6666666764
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=8.1e-12 Score=121.04 Aligned_cols=66 Identities=30% Similarity=0.407 Sum_probs=54.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.. ..+++|++|++|||+|+|+. +|+.+|.||..
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~--kr~~yD~~G~~ 71 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQ--KRAQYDQFGHA 71 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHh--HHHHHHhcCcc
Confidence 4457999999999999999999999999984 3322 24799999999999999998 56666677753
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.1e-11 Score=120.21 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=53.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCCc---HHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNND---EATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~gd---e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
.|+|++|||+++||.+|||+|||++++. +|.+++ +++|++|++|||+|+|+. +|+.+|.||.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~--~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPE--KRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhh--hhhhhhccCC
Confidence 7999999999999999999999999994 443333 579999999999999998 6677777775
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.1e-11 Score=119.79 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=55.3
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.+|.||.-
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~--~r~~yD~~G~~ 72 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPK--KRGIYDQYGHE 72 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHH--HHHHHHhhccc
Confidence 5568999999999999999999999999994 33322 2689999999999999998 66777777753
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.2e-11 Score=120.25 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=53.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|+|++|||+++||++|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.++.||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ--KRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHH--HHHHHHhhccc
Confidence 47999999999999999999999999994 33322 3689999999999999998 56666677753
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.3e-11 Score=119.52 Aligned_cols=66 Identities=32% Similarity=0.371 Sum_probs=55.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.+|.||.-
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kr~~yD~~g~~ 72 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE--KRARYDRFGHA 72 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchh--hhhhhhhcccc
Confidence 4468999999999999999999999999993 43322 2579999999999999998 67777777753
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.3e-11 Score=119.64 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=55.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.+|.||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--~r~~yD~~G~~ 72 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ--KKAQYDQFGTA 72 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHh--hhCchhhcCcc
Confidence 4457999999999999999999999999994 33322 2689999999999999998 67777778764
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.3e-11 Score=119.08 Aligned_cols=66 Identities=30% Similarity=0.376 Sum_probs=54.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|+..|+|++|||+++||.+|||+|||++++. +|..+ .+++|++|++|||+|+|+. +|+.++.||..
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~--~r~~yd~~g~~ 72 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ--KRAAYDQYGHA 72 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchh--hhhHhhhcccc
Confidence 4568999999999999999999999999984 44332 2589999999999999998 56666677753
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.3e-11 Score=119.90 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
..|+|++|||+++||.+|||+|||++++. +|.. +.+++|++|++|||+|+|+. +|+.+|.||.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~--kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAE--KRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchH--hhhhhhhcCc
Confidence 57999999999999999999999999984 3332 24789999999999999998 6667777775
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.3e-11 Score=119.19 Aligned_cols=64 Identities=27% Similarity=0.399 Sum_probs=53.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|+|++|||+++||.+|||+|||++++. +|..+ .+++|++|++|||+|+|+. +|..++.||..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kr~~yd~~g~~ 71 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN--KRAQYDRFGHT 71 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcc--hhHHHHhcCcc
Confidence 37999999999999999999999999983 44332 2589999999999999998 56677777764
No 25
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.20 E-value=2.8e-11 Score=88.22 Aligned_cols=56 Identities=32% Similarity=0.571 Sum_probs=47.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhhh--hcC-CCcH----HHHHHHHHHHHHhhcHHHHhhh
Q 023242 65 NPYEVLGVNPIEGFDMVKAVYAKKRKE--AER-NNDE----ATAARLEKAYDKLMMEQLSKRK 120 (285)
Q Consensus 65 dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~-~gde----~~f~~Ie~AYd~L~~~~lr~R~ 120 (285)
|||++|||+++++.+||+++|+++++. ++. ++++ +.+++|++||++|.++..|++.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y 63 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY 63 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence 689999999999999999999999994 333 3444 8999999999999999865543
No 26
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-11 Score=117.46 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-NDEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
.+...|++|||+++||.+|||+|||++++. +|.+ +..++|++|.+|||+|+|.+ +|+-+|.||.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~e--kr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPE--KREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--HHHHHHhhhh
Confidence 457899999999999999999999999994 3333 34799999999999999998 5666655553
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.1e-11 Score=118.85 Aligned_cols=63 Identities=35% Similarity=0.446 Sum_probs=52.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccC----CCC
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVT----FGS 127 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~----~Gk 127 (285)
+.|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.+|. ||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--~r~~yD~~~~~~G~ 80 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEK--KRKEYDEARSLFGN 80 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchh--hHHHHHHHHhhhcc
Confidence 57999999999999999999999999994 33321 3689999999999999997 5556665 664
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.4e-11 Score=117.98 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=54.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|+|++|||+++||.+|||+|||++++. +|.+ ..+++|++|++|||+|+|+. +|+.++.||..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~--kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPE--KRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHH--HHHHHhhhccc
Confidence 47999999999999999999999999984 3332 23789999999999999998 66777777763
No 29
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.18 E-value=3.8e-11 Score=86.06 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=44.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC-----cHHHHHHHHHHHHHhhcH
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN-----DEATAARLEKAYDKLMME 114 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g-----de~~f~~Ie~AYd~L~~~ 114 (285)
.|||++|||+++++.+|||+|||++++. ++..+ .++.|++|++||++|.++
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999999999984 44444 478999999999999986
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.4e-11 Score=116.55 Aligned_cols=63 Identities=30% Similarity=0.385 Sum_probs=53.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|++|||+++||.+|||+|||++++. +|.. ..+++|++|++|||+|+|+. +|..+|.||..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~--~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQ--KRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHh--HhhHHHhcccc
Confidence 7999999999999999999999999984 3322 23789999999999999998 66666677753
No 31
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=4.1e-11 Score=117.01 Aligned_cols=64 Identities=30% Similarity=0.435 Sum_probs=53.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..|+|++|||+++||.+|||+|||++++. +|... .+++|++|++|||+|+|+. +|+.+|.||..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--~r~~yD~~g~~ 71 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDD--KRRRYDQFGHA 71 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhh--hhhhhhhccch
Confidence 37999999999999999999999999994 33332 2689999999999999998 56677777763
No 32
>PHA03102 Small T antigen; Reviewed
Probab=99.16 E-value=3.7e-11 Score=104.05 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIE--GFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~A--S~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
++.|++|||+++| |.+|||+|||++++ |+|.++++++|++|++||++|.+...| ..++.+|+-
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r--~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKS--LRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHh--ccccccCCc
Confidence 4689999999999 99999999999988 577788999999999999999998844 444556654
No 33
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.8e-11 Score=116.91 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=53.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|++|||+++||.+|||+|||++++. +|... .+++|++|++||++|+|++ +|+.+|.||.-
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQ--KRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHhcccc
Confidence 4899999999999999999999999994 33322 3789999999999999996 77777777753
No 34
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.15 E-value=3.6e-11 Score=99.78 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=50.2
Q ss_pred CCCCCCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhh
Q 023242 57 SSNSDSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLM 112 (285)
Q Consensus 57 ~~~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~ 112 (285)
-...|+..++|++|||+++||.+|||++||++++ |+|.+|+++.+++|++|||+|+
T Consensus 58 f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 58 FENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred ccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 3456888999999999999999999999999998 4667788999999999999985
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.15 E-value=4e-11 Score=113.15 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=53.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
|+..|||++|||+++||.+|||+|||++++. +|.. ..+++|++|++|||+|+|+. +|..++.||.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~--kr~~yD~~g~ 70 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ--RRAEYDQLWQ 70 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH--HHHHHHHhhc
Confidence 4457999999999999999999999999984 3332 24789999999999999988 6666666653
No 36
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.15 E-value=6.6e-11 Score=83.24 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=43.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC----cHHHHHHHHHHHHHhhc
Q 023242 65 NPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN----DEATAARLEKAYDKLMM 113 (285)
Q Consensus 65 dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g----de~~f~~Ie~AYd~L~~ 113 (285)
|||++|||+++++.+|||++||++++. ++..+ .++.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999983 44443 47899999999999975
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=6.5e-11 Score=115.01 Aligned_cols=66 Identities=32% Similarity=0.435 Sum_probs=54.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N---DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|...|+|++|||+++||.+|||+|||++++. +|.. + .+++|++|++|||+|.|++ +|+.+|.||..
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~--~R~~yD~~G~~ 73 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPD--KRSRYDQFGHA 73 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHH--HHHHHHHhccc
Confidence 3468999999999999999999999999983 3332 1 3689999999999999986 56666677753
No 38
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.8e-11 Score=110.62 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=54.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcC---CCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AER---NNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~---~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
+..+|||+||||+++|+..|||+||++|++. +|- .+.+++|++|.+|||+|+|+. +|+.+|.+|..
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~e--KR~~YD~~~~~ 110 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEE--KRQEYDVYGLE 110 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHH--HHHHHHHhhhh
Confidence 4445999999999999999999999999984 211 234899999999999999998 77777665553
No 39
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.10 E-value=1.1e-10 Score=112.06 Aligned_cols=62 Identities=31% Similarity=0.447 Sum_probs=52.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 65 NPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 65 dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
|+|++|||+++||.+|||+|||++++. +|.. .++++|++|++|||+|+|+. +|+.++.||..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~--~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPE--KRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChH--HHHhhhhcccc
Confidence 799999999999999999999999994 3332 24789999999999999998 56666677754
No 40
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.1e-10 Score=112.77 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC-----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN-----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g-----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|++|||+++||.+|||+|||++++. +|... .+++|++|++||++|+|+. +|+.++.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~--~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQ--KRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChh--hhhhhcccCCc
Confidence 6999999999999999999999999994 33321 3589999999999999998 67777778764
No 41
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-10 Score=107.97 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=64.2
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCc----HHHHHHHHHHHHHhhcHHHHhhhhccCCCCccccc
Q 023242 59 NSDSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNND----EATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSK 132 (285)
Q Consensus 59 ~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gd----e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v~~ 132 (285)
......|.|+|||++++|+.||||||||++++ |++.+|| .++|++||.||++|+|.. +|.-+|.||...+..
T Consensus 26 ~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~--kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 26 EDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPT--KRNVYDEYGELGLKL 103 (279)
T ss_pred cccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChh--hhhhHHHhhhHHHHH
Confidence 34457899999999999999999999999999 4444444 689999999999999998 788888888776665
Q ss_pred chhccc
Q 023242 133 EIKFAD 138 (285)
Q Consensus 133 ~ir~ad 138 (285)
..-|.+
T Consensus 104 ~e~fg~ 109 (279)
T KOG0716|consen 104 AEQFGE 109 (279)
T ss_pred HHhhcc
Confidence 555644
No 42
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=1.5e-10 Score=111.89 Aligned_cols=63 Identities=30% Similarity=0.453 Sum_probs=53.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN---DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|++|||+++||.+|||+|||++++. +|..+ .+++|++|++||++|+|+. +|+.++.||..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~--~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAE--KRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchh--hhhhHhhcCCc
Confidence 5899999999999999999999999984 33332 3789999999999999998 66666677753
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.1e-10 Score=111.04 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=53.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|++|||+++||.+|||+|||++++. +|.. +.+++|++|++||++|+|+. +|..++.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~--~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPE--TRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchH--HHHHHhhcccc
Confidence 6999999999999999999999999984 3322 34799999999999999998 66666677753
No 44
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.8e-10 Score=110.42 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=54.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCc-------HHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNND-------EATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gd-------e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.++.|.|..|+|++|||+|||++||||+++ |+|++-| |++|++|.+|||+|+|++ +|.-+|.||.-
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~--kRaIYD~~G~q 80 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQ--KRAIYDNYGEQ 80 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHhhhc
Confidence 445699999999999999999999999999 4444322 889999999999999999 66666666654
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-09 Score=99.89 Aligned_cols=65 Identities=29% Similarity=0.345 Sum_probs=54.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC--C----cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCcc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN--N----DEATAARLEKAYDKLMMEQLSKRKKGVTFGSFK 129 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~--g----de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~ 129 (285)
..|||++|||..+||+.||++||+|+++. ++.. . ..++|++++.||.+|+|++ .|.-++..|.++
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDee--kR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEE--KRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHH--HHHHHhccCCCC
Confidence 45999999999999999999999999994 3222 1 2689999999999999998 777777778874
No 46
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.92 E-value=1.6e-09 Score=114.95 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 60 SDSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN---DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 60 ~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.+.+.++|++|||+++||.+|||+|||++++. ++... ..++|++|++||++|+|+. +|+.++.||+-
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~--kRk~YD~~G~~ 640 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDID--KKKMYNKFGYD 640 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHH--HHHHHhhcccc
Confidence 35568999999999999999999999999983 33322 3689999999999999998 56666677775
No 47
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-09 Score=103.28 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcC-CCc---HHHHHHHHHHHHHhhcHHHHhhhhccCCCCccccc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AER-NND---EATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSK 132 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~-~gd---e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v~~ 132 (285)
+.|+|.+|||+++|+..||++|||++++. ++. ++| .++|+++.+||++|.|+.+|.+ +|.+|+.....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~--YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA--YDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH--HHHHhhhcccc
Confidence 57999999999999999999999999983 333 233 7899999999999999996665 55666654433
No 48
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-09 Score=106.16 Aligned_cols=60 Identities=27% Similarity=0.264 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCCc-----HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNND-----EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~gd-----e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
....+||+|||..+|+.+|||++||++++. ++..+| .++|+.|++|||+|+|++-|+-+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd 72 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYD 72 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHH
Confidence 356899999999999999999999999994 444444 689999999999999999666555
No 49
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.85 E-value=2.2e-09 Score=100.10 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=46.5
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---C--------cHHHHHHHHHHHHHhhcHH
Q 023242 60 SDSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---N--------DEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 60 ~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---g--------de~~f~~Ie~AYd~L~~~~ 115 (285)
.++..|+|++|||++++|.+|||+|||+++++ +|.- + .+++|++|++|||+|+.++
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778999999999999999999999999984 3331 1 1479999999999998743
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.1e-09 Score=88.67 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=50.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-Cc----HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-ND----EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-gd----e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
...|+|++|||+++|+.+||++|||++++. ++.. ++ +++|++|++||++|++...|....
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd 70 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYD 70 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhh
Confidence 457899999999999999999999999994 3332 22 499999999999999998655555
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.70 E-value=1.9e-08 Score=104.93 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=50.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCC---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNN---DEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
.|+|++|||+++|+.+|||+|||++++. ++..+ .+++|++|++||++|+|+. +|..++.||.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~--KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPK--KRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHH--HHHHHhhhcc
Confidence 6999999999999999999999999984 33332 2568999999999999998 4555556654
No 52
>PHA02624 large T antigen; Provisional
Probab=98.70 E-value=1.4e-08 Score=104.18 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=53.4
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhh
Q 023242 63 ELNPYEVLGVNPIE--GFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRK 120 (285)
Q Consensus 63 ~~dpYevLGV~~~A--S~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~ 120 (285)
..++|++|||+++| |.+|||+|||++++ |+|.+||+++|++|++||++|.+...+.|+
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 36799999999999 99999999999999 567788999999999999999999888887
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.4e-07 Score=93.46 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hc---CCCcHHHHHHHHHHHHHhhcHHHHhhhhc
Q 023242 59 NSDSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AE---RNNDEATAARLEKAYDKLMMEQLSKRKKG 122 (285)
Q Consensus 59 ~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~---~~gde~~f~~Ie~AYd~L~~~~lr~R~~g 122 (285)
...+..|||.+|||.+++|+++||+.|||+++. +| ++..+|.|+.++.|||+|.+.. +|+++
T Consensus 230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~--kR~eY 296 (490)
T KOG0720|consen 230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSV--KRKEY 296 (490)
T ss_pred hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchh--hhhHH
Confidence 344578999999999999999999999999993 32 2355999999999999999988 56665
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.30 E-value=1.1e-06 Score=77.10 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=46.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHhhh--hcCC-Cc--------HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 64 LNPYEVLGVNPI--EGFDMVKAVYAKKRKE--AERN-ND--------EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 64 ~dpYevLGV~~~--AS~eEIk~AYRrl~l~--~~~~-gd--------e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.|+|++|||+++ ++.++|+++||++.+. ++.. +. .+.++.||+||++|+++..|.++.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence 489999999996 7789999999999883 3321 11 346788999999999998666664
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.21 E-value=1.3e-06 Score=85.04 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=46.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhhh--cCCCc-------HHHHHHHHHHHHHhhcHHHH
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKEA--ERNND-------EATAARLEKAYDKLMMEQLS 117 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~~--~~~gd-------e~~f~~Ie~AYd~L~~~~lr 117 (285)
...|+|+||||.++||-.||-+||||++... ++-.| |.+|-.|.+|.|+|+|++.|
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkR 456 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKR 456 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHH
Confidence 4689999999999999999999999999843 22122 67899999999999999843
No 56
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.16 E-value=4.1e-06 Score=73.33 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHhhh--hcCC-CcH------HHHHHHHHHHHHhhcHHHHhhhh
Q 023242 64 LNPYEVLGVNPI--EGFDMVKAVYAKKRKE--AERN-NDE------ATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 64 ~dpYevLGV~~~--AS~eEIk~AYRrl~l~--~~~~-gde------~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.|+|++|||+++ ++.++|+++||++.+. +|.. +++ +.+..|++||++|+++..|..+-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~Yl 70 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYM 70 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 589999999997 7899999999999883 3322 222 23579999999999998666554
No 57
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.11 E-value=6.4e-06 Score=72.71 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=48.1
Q ss_pred CCCCCcccccCCCCC--CCHHHHHHHHHHHhhh--hcCC-C--c------HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 61 DSELNPYEVLGVNPI--EGFDMVKAVYAKKRKE--AERN-N--D------EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 61 ~~~~dpYevLGV~~~--AS~eEIk~AYRrl~l~--~~~~-g--d------e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
|...|+|++||+++. .+.++|+++||++.+. ++.. + + .+.+..||+||++|+++..|..+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~Yl 74 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYL 74 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 567899999999999 5679999999999883 3321 1 1 356889999999999998665554
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.9e-06 Score=85.02 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcC-CC----cHHHHHHHHHHHHHhhcHHHHhhhhc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AER-NN----DEATAARLEKAYDKLMMEQLSKRKKG 122 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~-~g----de~~f~~Ie~AYd~L~~~~lr~R~~g 122 (285)
..|+|++|||+.+||.+|||+|||++++. ++. .+ .|.+|++|-+||.+|.|...|.|+..
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 57999999999999999999999999984 221 12 37899999999999999998888873
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.6e-06 Score=76.25 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=50.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcC--CC---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AER--NN---DEATAARLEKAYDKLMMEQLSKRKKGVTFGS 127 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~--~g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk 127 (285)
..|+|++|||.++|+.+||++|||++++. ++. .. .+++|++|.+|||+|++.+ +|..++.||.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~--kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPK--KRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHH--HhhhccccCc
Confidence 46899999999999999999999999994 222 12 2457899999999999988 6666666665
No 60
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.09 E-value=7e-06 Score=72.58 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=45.6
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHhhh--hcCC---Cc-H-----HHHHHHHHHHHHhhcHHHHhhhh
Q 023242 63 ELNPYEVLGVNPI--EGFDMVKAVYAKKRKE--AERN---ND-E-----ATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 63 ~~dpYevLGV~~~--AS~eEIk~AYRrl~l~--~~~~---gd-e-----~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
..|+|++|||+++ ++.++|+++||++.+. ++.. ++ + +..+.||+||++|+++..|..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL 76 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4799999999995 6789999999999983 3321 12 2 23479999999999998666554
No 61
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.3e-06 Score=68.72 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHH
Q 023242 59 NSDSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 59 ~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~ 115 (285)
+.|+..++-.||||+|.++.+-||+||||.+. |+|.+|.+....+||+|+|.|....
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999999999999888 5678899999999999999987643
No 62
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.7e-06 Score=78.69 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C--cHHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N--DEATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g--de~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.+|.|++|||+.+|+..||.+|||++++. +|.. + ..+.|..|..||+.|.|+.-|.-..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~yd 95 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYD 95 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHH
Confidence 58999999999999999999999999983 2221 1 1467999999999999998444333
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.7e-05 Score=71.97 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=51.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCc-----HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNND-----EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gd-----e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.-.-|||++|.|+|+.+.++||+.||++++ |++.+.| ...|..+.+||..|.++..+.|..
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 346799999999999999999999999998 4554444 467888999999999999888876
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0011 Score=72.02 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCcccccCCCC----CCCHHHHHHHHHHHhhh--hcCC-CcHHHHHHHHHHHHHhhcHH
Q 023242 55 TGSSNSDSELNPYEVLGVNP----IEGFDMVKAVYAKKRKE--AERN-NDEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 55 ~g~~~~~~~~dpYevLGV~~----~AS~eEIk~AYRrl~l~--~~~~-gde~~f~~Ie~AYd~L~~~~ 115 (285)
..-+..|++.++||+|.|+- ....+.||++|+|+++. +|++ +..++|.++++|||.|..+.
T Consensus 1272 ekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~t 1339 (2235)
T KOG1789|consen 1272 EKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSET 1339 (2235)
T ss_pred hcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 35557799999999999873 33447899999999984 2222 22689999999999998654
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0012 Score=61.49 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=45.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHh
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSK 118 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~ 118 (285)
.+.|.+|||.++|+.+|++.||.++++. ++.+ .|.++|.+|++||..++.+.+.+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999984 3322 35799999999999777766543
No 66
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.72 E-value=0.0038 Score=55.19 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=48.3
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHhhh--hcC---CCc------HHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPI--EGFDMVKAVYAKKRKE--AER---NND------EATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~--AS~eEIk~AYRrl~l~--~~~---~gd------e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|+|+++|+++. .+..++++.||++.+. ++. .++ .+.-..||+||.+|.++-.|..+-=.-+|.+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~ 79 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGE 79 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCC
Confidence 689999999988 9999999999999883 332 122 2345889999999999986655543344333
No 67
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.21 E-value=0.003 Score=53.45 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 60 SDSELNPYEVLGVNPIEGFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 60 ~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.|+.++..+||||++..+.|||.+.|.++.. +++.+|....-.+|..|.|.|..+ ++.+.+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E-l~~~~~ 116 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE-LKEEEK 116 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH-HHHHH-
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4888899999999999999999999999988 345678999999999999998764 444333
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0043 Score=54.36 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=39.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhhhcCCCc---------------HHHHHHHHHHHHHh
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNND---------------EATAARLEKAYDKL 111 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~~~~~gd---------------e~~f~~Ie~AYd~L 111 (285)
.++|++||++..++.++|+++||++..+. +.| ++++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~--~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQ--HPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhc--CHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999888742 222 67889999999865
No 69
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.10 E-value=0.0062 Score=44.58 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhhcHH
Q 023242 61 DSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 61 ~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~~~~~gde~~f~~Ie~AYd~L~~~~ 115 (285)
|+..++|+.|||+++.++++|-.+|+.... .++.......+|-..|-+.+
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-----~~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-----DDPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-----cChHhHHHHHHHHHHHHHHc
Confidence 567789999999999999999999987764 34456667777888877754
No 70
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=95.68 E-value=0.021 Score=49.62 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhh--hhcC---CC------cHHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 76 EGFDMVKAVYAKKRK--EAER---NN------DEATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 76 AS~eEIk~AYRrl~l--~~~~---~g------de~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
-+.++|+++||++.+ |+|. .+ ..+.++.||+||++|+++..|..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~yl 59 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYM 59 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 467899999999988 3332 11 1367899999999999988555554
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.036 Score=52.93 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCCCcccccCCC---CCCCHHHHHHHHHHHhhh--hcC------CCcHHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 62 SELNPYEVLGVN---PIEGFDMVKAVYAKKRKE--AER------NNDEATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 62 ~~~dpYevLGV~---~~AS~eEIk~AYRrl~l~--~~~------~gde~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
...|.|.+||++ --|...+|.+|+++.+.. ++. .++.+.|+-|+.|||+|.|..+|.-..
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyD 111 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcc
Confidence 347899999998 478899999999988873 211 244789999999999999988554444
No 72
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=3.6 Score=37.64 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=46.0
Q ss_pred cCCCcHHHHHHHHHHHHHhhcHHHHhhhhccC----CCCc-------ccccchhcccc-CCCCCCCccccCCChhHHHHH
Q 023242 93 ERNNDEATAARLEKAYDKLMMEQLSKRKKGVT----FGSF-------KVSKEIKFADK-QPIFPWGPRFAKSSPQDIRIN 160 (285)
Q Consensus 93 ~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~----~Gk~-------~v~~~ir~ad~-~~~~pW~~r~~~Ps~~~i~~~ 160 (285)
++..||+.-.-+|++.+.|+.++ ++|.+ +|.+ +++...|-+.. +.--||+- =.+..+.-
T Consensus 34 ~gksdeeik~Il~e~ipqIleeQ----kkGitARkL~gtPTe~v~sf~~k~~~kaa~~ekNtdp~lm-----~lDssLl~ 104 (226)
T COG4858 34 DGKSDEEIKIILEEMIPQILEEQ----KKGITARKLLGTPTEWVVSFDPKVAVKAAPVEKNTDPWLM-----WLDSSLLF 104 (226)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhh----hccchHHHHcCCchHHHhhcCcchhcccCCcccCCCceEE-----EecccHHH
Confidence 34556666666799999988866 34321 3321 11122222211 11124543 12334666
Q ss_pred HHHHHHHHHHhhc-cCCCCchHHHHHH
Q 023242 161 LAISAAFTAWIAI-KRYAEYKPLQFLA 186 (285)
Q Consensus 161 ~~~~~~l~~~~~~-~~~~~~~~l~~l~ 186 (285)
+++++++.+++.+ +.+++...++.++
T Consensus 105 lg~~aLlsgitaff~~nA~~~GlItll 131 (226)
T COG4858 105 LGAMALLSGITAFFQKNAQVYGLITLL 131 (226)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7777788777766 6677777776544
No 73
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=91.31 E-value=7.1 Score=34.91 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=14.7
Q ss_pred CCcHHHHHHHHHHHHHhhcHH
Q 023242 95 NNDEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 95 ~gde~~f~~Ie~AYd~L~~~~ 115 (285)
-.|++.-+-+++..+.|.+.|
T Consensus 22 ~~e~~~e~~L~eil~~LleaQ 42 (206)
T PF06570_consen 22 VSEEEIEELLEEILPHLLEAQ 42 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 355666666788888888765
No 74
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.68 E-value=3.3 Score=35.32 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=41.2
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCCcHHHHHHHHHHHHHhh
Q 023242 59 NSDSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNNDEATAARLEKAYDKLM 112 (285)
Q Consensus 59 ~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~gde~~f~~Ie~AYd~L~ 112 (285)
+.|+.++.-+||+|++.-+.|||.+-|-.+... ...+|.=..-.+|=.|.|.|-
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 348888999999999999999999999999873 334676444455666666643
No 75
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=67.99 E-value=9.4 Score=29.52 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=38.4
Q ss_pred hhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHH
Q 023242 195 EKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSA 274 (285)
Q Consensus 195 ~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~ 274 (285)
+|.+.+-.|+||-.=+ .++.+-+++|.++- .|.-.++.....-.+.+ --|+++|+.+.
T Consensus 4 ~~M~RYtsPVNpAvfP--------------hLttvLl~iG~fft------AwFf~~~VtStKy~r~l--~KELlIsl~aS 61 (79)
T KOG4452|consen 4 SKMNRYTSPVNPAVFP--------------HLTTVLLGIGLFFT------AWFFMIQVTSTKYNRNL--LKELLISLTAS 61 (79)
T ss_pred HHHhhhcCCCChhHhH--------------HHHHHHHHHHHHHH------HHHHheeEecchhhHHH--HHHHHHHHHHH
Confidence 4566676778776333 56666677776553 34322232211111111 46999999888
Q ss_pred HHHHHHhhcC
Q 023242 275 VLLFIMASYY 284 (285)
Q Consensus 275 v~l~~~~sfl 284 (285)
++|-+.+-||
T Consensus 62 vFlGFG~vFL 71 (79)
T KOG4452|consen 62 VFLGFGSVFL 71 (79)
T ss_pred HHHhhhHHHH
Confidence 8776665543
No 76
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=64.96 E-value=22 Score=27.89 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=36.0
Q ss_pred hhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHH
Q 023242 196 KLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAV 275 (285)
Q Consensus 196 K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v 275 (285)
+...+.+|++|..=+ .++.+-|.+|.++- .|.-+-|.....-.+.+ .+|+.+++++.+
T Consensus 3 ~m~~Y~sPV~p~~~p--------------~La~vll~iGl~ft------a~Ffiyevts~k~~r~i--~kEl~~a~vAS~ 60 (77)
T PF05251_consen 3 SMSRYTSPVNPALYP--------------HLAVVLLAIGLFFT------AWFFIYEVTSTKKTRSI--AKELLIALVASL 60 (77)
T ss_pred cccCcCCCCCHHHHH--------------HHHHHHHHHHHHHH------HHHHHHhhhcCcccccH--HHHHHHHHHHHH
Confidence 455566777776333 34444455555443 33222233322222222 689999999988
Q ss_pred HHHHHhhc
Q 023242 276 LLFIMASY 283 (285)
Q Consensus 276 ~l~~~~sf 283 (285)
+|=+.+-|
T Consensus 61 flGfG~lF 68 (77)
T PF05251_consen 61 FLGFGSLF 68 (77)
T ss_pred HHhHHHHH
Confidence 87665544
No 77
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=61.86 E-value=1.5e+02 Score=28.82 Aligned_cols=54 Identities=11% Similarity=-0.029 Sum_probs=29.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhh-hcCCC-cHHHHHHHHHHHHHhhcHHHHhhhhc
Q 023242 69 VLGVNPIEGFDMVKAVYAKKRKE-AERNN-DEATAARLEKAYDKLMMEQLSKRKKG 122 (285)
Q Consensus 69 vLGV~~~AS~eEIk~AYRrl~l~-~~~~g-de~~f~~Ie~AYd~L~~~~lr~R~~g 122 (285)
--|...++.+.-|+.+.|...+- .|-.. .+|-.++.+++-+.+.-.++++++..
T Consensus 21 ~~g~~~~~~~~~i~~v~~~y~~~~~d~~~~~~eg~r~~~~~~~~~~~~~~~~~~s~ 76 (299)
T PF05884_consen 21 NAGCTAGEQDASIRDVTRTYSNYGQDLQQYYAEGLRLRPEAVQQETPNQLQSTASQ 76 (299)
T ss_pred ccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34544445555555555433331 00111 25566777888888777777777763
No 78
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=58.45 E-value=23 Score=35.40 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhh--hhhhhhhhhc------CccCCccccchhHHHHHHHHHHHHHHHhhcC
Q 023242 225 LLRCLALVFGVIAVSSLAY--TGILNLIEYA------GGFIPAFLFDNQELIVTGSSAVLLFIMASYY 284 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~~--t~~l~~i~~~------~~~~p~~~~~~~e~~~s~~~~v~l~~~~sfl 284 (285)
++++.|.++|+++|..+.+ +.+.+.+|.. ...+|..+ .-++....++..+++-+++|+|
T Consensus 325 ~iG~iG~llG~iLG~~~~~~i~~~~~~~~~~~~~~~~~~~lP~~~-~~~di~~v~~~al~ls~lAtly 391 (408)
T COG4591 325 IIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGISTLPIEL-SLLDVVLVLVFALLLSLLATLY 391 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccceeccccCCcee-eHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888777664 2332233311 12466532 2356677777777888888875
No 79
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=54.22 E-value=42 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=24.4
Q ss_pred HHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHHHh
Q 023242 239 SSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMA 281 (285)
Q Consensus 239 s~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~ 281 (285)
++++| .+++ +++.+.+|..+ ..-.+.+++...++|+..
T Consensus 23 ~gigy-si~~--~~~~L~Lp~~~--~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 23 GGIGY-SILS--QIPQLGLPQFL--AHGALFSIFIGALLWLVG 60 (89)
T ss_pred HhHHH-HHHH--hcccCCCcHHH--HhhHHHHHHHHHHHHHhc
Confidence 44555 4444 33455677644 345678899999999874
No 80
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=53.19 E-value=27 Score=31.49 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhh--hhhhh---hhhhhcCccCCccccchhHHHHHHHHHHHHHHHhhc
Q 023242 222 GKRLLRCLALVFGVIAVSSLA--YTGIL---NLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASY 283 (285)
Q Consensus 222 ~~rl~~~~~Lv~G~~~gs~l~--~t~~l---~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~sf 283 (285)
.+|++....|+|..++.+.+. +|.-+ ++-++....+|.|+ .++..++.|++|+++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~qlInFlIlv~lL~k 67 (205)
T PRK06231 5 KTRVFKLLLLSFSFLIISLFLVSCTENVEELKSKSIINELFPNFW----VFIAHLIAFSILLLLGIF 67 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCChhhcCHHHHHHHhcCcHH----HHHHHHHHHHHHHHHHHH
Confidence 345666666666655444432 24443 34444555577654 677888888888776543
No 81
>PRK10692 hypothetical protein; Provisional
Probab=51.42 E-value=50 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=23.9
Q ss_pred HHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHHHh
Q 023242 239 SSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMA 281 (285)
Q Consensus 239 s~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~ 281 (285)
++++| .+++ +++.+.+|..+ ..-.+.+++...++|+..
T Consensus 23 ~gigy-si~~--~i~~L~Lp~~~--~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 23 VGVGY-SILN--QLPQLNLPQFF--AHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHHHH-HHHH--hcccCCchHHH--HhhHHHHHHHHHHHHHhc
Confidence 44555 4444 33555677644 334567889999999874
No 82
>COG4709 Predicted membrane protein [Function unknown]
Probab=47.14 E-value=2.3e+02 Score=25.96 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 023242 225 LLRCLALVFGVIAVSS 240 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~ 240 (285)
++...+++++.++|+.
T Consensus 118 if~~~a~~~agil~g~ 133 (195)
T COG4709 118 IFSGWALVAAGILGGV 133 (195)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4455555555555443
No 83
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=45.72 E-value=56 Score=28.67 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHH
Q 023242 220 RMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVL 276 (285)
Q Consensus 220 ~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~ 276 (285)
||-+|.+-+.|+-.+.-++++.++ .+| +......+|+|. =+++|+++|.+
T Consensus 60 RM~rRm~~~~GiP~~lG~~~f~~~-y~l--~~~~~~dvP~~~----~~~~S~~~Fg~ 109 (153)
T PF11947_consen 60 RMLRRMAVFVGIPTALGVAVFVVF-YYL--KSRQIVDVPPWA----VLLVSLVFFGL 109 (153)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHH-HHH--HhccccccCchH----HHHHHHHHHHH
Confidence 777777766666555555555432 222 233445789874 45555555544
No 84
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=45.36 E-value=28 Score=35.36 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.2
Q ss_pred ccccCCCCCCCHHHHHHHHHHHhh
Q 023242 67 YEVLGVNPIEGFDMVKAVYAKKRK 90 (285)
Q Consensus 67 YevLGV~~~AS~eEIk~AYRrl~l 90 (285)
++-.++..-.+.++||+||||..+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L 414 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVL 414 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhh
Confidence 445677788899999999999888
No 85
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=40.99 E-value=74 Score=25.81 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHH-HHhhhhhh
Q 023242 182 LQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAV-SSLAYTGI 246 (285)
Q Consensus 182 l~~l~~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~g-s~l~~t~~ 246 (285)
+++|+.+||+-+.+=-|.-.|. +..+|| +...++|+|.++- +.+.|..|
T Consensus 19 iiLL~~aCIfAfidfsK~~~~~---------~~~wRa-------lSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 19 IILLIAACIFAFIDFSKNTKPT---------DYTWRA-------LSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred HHHHHHHHHHHhhhhccCCCCc---------hhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577777777655554331 212555 4677777877432 23334444
No 86
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=39.53 E-value=2.6e+02 Score=24.50 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=11.6
Q ss_pred HHHHHHHHHHH-HHHHHhhh
Q 023242 225 LLRCLALVFGV-IAVSSLAY 243 (285)
Q Consensus 225 l~~~~~Lv~G~-~~gs~l~~ 243 (285)
....++.++|. ++|+.++|
T Consensus 93 ~~a~~ge~igt~iig~~~s~ 112 (160)
T TIGR02359 93 YWASLGEILGTGIIGSLLAY 112 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777 55555554
No 87
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=39.17 E-value=48 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=15.9
Q ss_pred HHhhhccCCCCCCCCCCCCCCc
Q 023242 193 FFEKLKSFEPAVSPTYTEEGDD 214 (285)
Q Consensus 193 l~~K~~~~~p~~~~~~~~~~~~ 214 (285)
+.+---++.|+.-|.||||..+
T Consensus 18 ~vQ~APQYa~GeeP~YDEdd~d 39 (65)
T PF10731_consen 18 IVQSAPQYAPGEEPSYDEDDDD 39 (65)
T ss_pred HHhcCcccCCCCCCCcCcccCc
Confidence 3444455778999999998843
No 88
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=38.50 E-value=1.2e+02 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=17.4
Q ss_pred CCccccchhHHHHHHHHHHHHHHH
Q 023242 257 IPAFLFDNQELIVTGSSAVLLFIM 280 (285)
Q Consensus 257 ~p~~~~~~~e~~~s~~~~v~l~~~ 280 (285)
+|+......+.++|.+|..+||-+
T Consensus 123 ~~~~~~l~~nTiiT~~CiyiLyGl 146 (173)
T PF11085_consen 123 IKPVTELDWNTIITTLCIYILYGL 146 (173)
T ss_pred ChhhhhCchhHHHHHHHHHHHHHH
Confidence 444444466899999999999843
No 89
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=37.15 E-value=28 Score=29.10 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHH
Q 023242 187 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAV 238 (285)
Q Consensus 187 ~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~g 238 (285)
...|=++-+|+. + +.|.++++--+ .|..|+.+.+=+..|+.+||++|
T Consensus 56 ~~~vE~~~~rlg-~---~~P~Lt~~Q~~-~~~~r~a~~~G~~~Gv~iGClLG 102 (111)
T PF10507_consen 56 GGYVERLAQRLG-L---KAPVLTPAQLN-SRSTRWASNLGRAIGVTIGCLLG 102 (111)
T ss_pred HHHHHHHHHHhC-C---CCCCCCHHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777877 3 34556554444 67777777777888888888775
No 90
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=37.02 E-value=2e+02 Score=30.97 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhhhc
Q 023242 151 KSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLK 198 (285)
Q Consensus 151 ~Ps~~~i~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~a~vyfl~~K~~ 198 (285)
.|+..+..++..+-..+.+++...=+ .|...++.+.||+..+.+.
T Consensus 26 ~P~r~~~~~r~~~a~~L~l~i~~~l~---~P~~a~a~~~vfivsqp~~ 70 (683)
T PRK11427 26 RPGRVPQTLQLWVGCLLVILISMTFE---IPFLALSLAVLFYGIQSNA 70 (683)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHheeccch
Confidence 45667777776666555554443211 2223255777888876554
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.84 E-value=55 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.051 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 023242 159 INLAISAAFTAWI 171 (285)
Q Consensus 159 ~~~~~~~~l~~~~ 171 (285)
+.+++||++++++
T Consensus 66 i~~Ii~gv~aGvI 78 (122)
T PF01102_consen 66 IIGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHH
Confidence 4666677665443
No 92
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=36.77 E-value=65 Score=24.45 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 023242 224 RLLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 224 rl~~~~~Lv~G~~~gs~l~ 242 (285)
-++-++|+++|.++|.+++
T Consensus 59 ~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 59 ALILALGLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3688889999998887765
No 93
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=35.82 E-value=17 Score=23.63 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.0
Q ss_pred cccccCCcchHhhhhc
Q 023242 6 SNVFHCPKAEVSLRNF 21 (285)
Q Consensus 6 ~~~~~c~~~~~~~~~~ 21 (285)
.|-.+|||+++++|..
T Consensus 2 ~~ga~~pppeislna~ 17 (32)
T PF07629_consen 2 ENGADCPPPEISLNAR 17 (32)
T ss_pred CCCCCCCCCcceeccc
Confidence 4678999999998753
No 94
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=34.52 E-value=4.4e+02 Score=25.58 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHH
Q 023242 187 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAV 238 (285)
Q Consensus 187 ~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~g 238 (285)
.++|+.+..++-.- --+++|+||++.|.+..-|+.-+.-.++-=..+.+
T Consensus 176 ~~Nv~~mR~~El~~---GI~V~D~~G~~vG~Sk~Aa~~Av~~t~~SRi~~~~ 224 (308)
T PF03820_consen 176 CINVPLMRSNELEN---GIEVFDEDGNVVGKSKKAARKAVSQTALSRIVMAA 224 (308)
T ss_pred hcchHhcCHHHHcc---cceeECCCCCEeeEEhHHHHHHHHHHHHHHHHHhc
Confidence 55788887776443 34689999999999987777665544444333333
No 95
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=34.36 E-value=1.1e+02 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=23.5
Q ss_pred CCCCCCccccCCChhHHHHHHHHHHHHHHHhhc
Q 023242 141 PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAI 173 (285)
Q Consensus 141 ~~~pW~~r~~~Ps~~~i~~~~~~~~~l~~~~~~ 173 (285)
-+|-|.|. .||..|-..++.+|.+..++.+.
T Consensus 57 ~~p~w~p~--~~s~~~~~~r~~~~~~~l~y~F~ 87 (928)
T TIGR00845 57 ILPIWEPQ--NPSVGDKIARATVYFVAMVYMFL 87 (928)
T ss_pred EeeeecCC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34558763 57899999999998888777665
No 96
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=33.95 E-value=45 Score=29.80 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=10.1
Q ss_pred chhhhhhhhHHH
Q 023242 216 GRALRMGKRLLR 227 (285)
Q Consensus 216 gRa~~~~~rl~~ 227 (285)
||.++-|||+++
T Consensus 34 G~~~~DGrRilG 45 (175)
T PF01864_consen 34 GKTFRDGRRILG 45 (175)
T ss_pred CCccCCCCEecC
Confidence 888888888885
No 97
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=33.09 E-value=1.4e+02 Score=24.05 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHH-HHHhhhhhh
Q 023242 183 QFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIA-VSSLAYTGI 246 (285)
Q Consensus 183 ~~l~~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~-gs~l~~t~~ 246 (285)
.+|+.|||+-..+=-|+...| ++-.+||. ...++|+|.++ -+.|.|+.|
T Consensus 20 iLL~~ACIFAfidFSK~~s~~--------~~~~wRal-------Sii~FIlG~vl~lGilifs~y 69 (91)
T PHA02680 20 LLLTAACVFAFVDFSKNTSNV--------TDYVWRAL-------SVTCFIVGAVLLLGLFVFSMY 69 (91)
T ss_pred HHHHHHHHHhhhhhhccCCCC--------cchhHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 335567777766655544111 23336776 55566666632 224555554
No 98
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=32.96 E-value=3.7e+02 Score=26.13 Aligned_cols=53 Identities=19% Similarity=0.016 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 023242 187 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGIL 247 (285)
Q Consensus 187 ~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l 247 (285)
.+.+|+..+++++. -+||-+.-|-. .|-+--.-..+|.+|.++|..+..|.+-
T Consensus 138 Ca~~~~~~~r~nrr--~~s~lIald~k------qW~Mst~lS~al~VaF~~a~~l~~T~~a 190 (314)
T COG3965 138 CAAIAWKLRRLNRR--LKSPLIALDTK------QWLMSTCLSAALFVAFAAAWLLAGTKFA 190 (314)
T ss_pred HHHHHHHHHhhhcc--CCCchhhhHHH------HHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 44666666665544 34555544332 4444455667888888888888777764
No 99
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=32.81 E-value=25 Score=18.70 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHh
Q 023242 100 TAARLEKAYDKL 111 (285)
Q Consensus 100 ~f~~Ie~AYd~L 111 (285)
.|.+++.||+.|
T Consensus 2 ~~~~V~~aY~~l 13 (14)
T PF07709_consen 2 KFEKVKNAYEQL 13 (14)
T ss_pred cHHHHHHHHHhc
Confidence 467778888765
No 100
>PHA02898 virion envelope protein; Provisional
Probab=32.81 E-value=99 Score=25.02 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHH
Q 023242 183 QFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVI 236 (285)
Q Consensus 183 ~~l~~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~ 236 (285)
++|+.|||+-..+=-|+-.|.++ .+||+ ...++|+|.+
T Consensus 20 iLL~~ACIfAfidfSK~~~~~~~---------~wRal-------Sii~FIlgiv 57 (92)
T PHA02898 20 ILLIVACICAYIELSKSEKPADS---------ALRSI-------SIISFILAII 57 (92)
T ss_pred HHHHHHHHHheehhhcCCCcchh---------HHHHH-------HHHHHHHHHH
Confidence 34557777777665565533222 26665 5556666663
No 101
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=30.18 E-value=1.5e+02 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=19.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCC
Q 023242 218 ALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIP 258 (285)
Q Consensus 218 a~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p 258 (285)
..-|.-|+++.+.+++|..+-....+ -++..+|+.|..++
T Consensus 181 ~~tW~lR~~G~llmf~G~~~~~~~l~-~l~~~~P~lg~l~~ 220 (248)
T PF07787_consen 181 TLTWILRFIGWLLMFIGFFLLFSPLY-TLVDWIPLLGNLVG 220 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhceeechhh
Confidence 34555666676667776533222211 22234555554343
No 102
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.08 E-value=1.7e+02 Score=23.04 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=27.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhhh---cCC--Cc----HHHHHHHHHHHHHhhc
Q 023242 69 VLGVNPIEGFDMVKAVYAKKRKEA---ERN--ND----EATAARLEKAYDKLMM 113 (285)
Q Consensus 69 vLGV~~~AS~eEIk~AYRrl~l~~---~~~--gd----e~~f~~Ie~AYd~L~~ 113 (285)
.-|.+|.|++|||+.|=...+..- ... .+ +....+|.+|-..|++
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999855544421 111 12 3445566666666665
No 103
>PRK11677 hypothetical protein; Provisional
Probab=30.01 E-value=50 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023242 225 LLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~ 242 (285)
++.++|||+|.++|.+++
T Consensus 4 ~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677899999999987776
No 104
>PHA03048 IMV membrane protein; Provisional
Probab=29.82 E-value=1.5e+02 Score=24.04 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHH-HHHhhhhhh
Q 023242 183 QFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIA-VSSLAYTGI 246 (285)
Q Consensus 183 ~~l~~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~-gs~l~~t~~ 246 (285)
++|+.+||+-..+=-|+. |+++ .+||+ ...++|+|.++ .+.+.|+.|
T Consensus 20 iLL~~aCIfAfidfsK~k-~~~~---------~wRal-------sii~FIlgivl~lG~~ifsmy 67 (93)
T PHA03048 20 ILLAASCIFAFVDFSKNK-ATVT---------VWRAL-------SGIAFVLGIVMTIGMLIYSMW 67 (93)
T ss_pred HHHHHHHHHhhhhhhcCC-Ccch---------hHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 335577777777666653 2221 16665 55666777633 233334444
No 105
>COG3597 Uncharacterized protein/domain associated with GTPases [Function unknown]
Probab=29.60 E-value=2.2e+02 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=19.8
Q ss_pred hhcCccCCccccchhHHHHHHHHHHHHHHHhhcC
Q 023242 251 EYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY 284 (285)
Q Consensus 251 ~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~sfl 284 (285)
+..|..+-+ ..++..|+.+.|+.|.|+
T Consensus 82 p~~GgaiaA-------~~a~~~t~alg~va~~yf 108 (139)
T COG3597 82 PGAGGAIAA-------SWAAGITFALGEVACKYF 108 (139)
T ss_pred cccchhHHH-------HHHHHHHHHHHHHHHHHh
Confidence 345555544 568889999999998875
No 106
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=29.18 E-value=3e+02 Score=27.99 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHH
Q 023242 154 PQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVF 233 (285)
Q Consensus 154 ~~~i~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~ 233 (285)
++-.+.|+.+..++.++.+..--. +++.+.+++++-..-+ + |...|+-| |=....-..+....++|
T Consensus 230 pkl~W~N~lLtl~lm~~Lv~gi~p--~~~lFmig~~iAL~vN----Y-----P~vk~Q~~---ri~aha~nal~vvs~i~ 295 (433)
T COG2851 230 PKLFWFNLLLTLALMGLLVSGIFP--PGVLFMIGFAIALPVN----Y-----PNVKEQME---RIGAHAGNALMVVSLIF 295 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHhC----C-----CCHHHHHH---HHHHhCcchhHHHHHHH
Confidence 456788888888887777764322 3445455555544321 1 11111111 11111122334444444
Q ss_pred HH-HHHHHhhhhhhhh-hhhhcCccCCccccchhHHHHHHHHHHH
Q 023242 234 GV-IAVSSLAYTGILN-LIEYAGGFIPAFLFDNQELIVTGSSAVL 276 (285)
Q Consensus 234 G~-~~gs~l~~t~~l~-~i~~~~~~~p~~~~~~~e~~~s~~~~v~ 276 (285)
+. ++-+.|..|+.+. .-...-..+|..+-.+.-+++.+++--+
T Consensus 296 AAGif~Gil~gtgMvdama~si~~vIP~~lgpyl~~ivgl~svP~ 340 (433)
T COG2851 296 AAGIFLGILSGTGMVDAMAKSIVSVIPDALGPYLPLIVGLLSVPF 340 (433)
T ss_pred HHHHHhhhhCCCchHHHHHHHHHHhCcHhhcchHHHHHHHHcCCe
Confidence 43 3334555566653 2222233467665556677777765433
No 107
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=28.58 E-value=89 Score=26.75 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHh
Q 023242 268 IVTGSSAVLLFIMA 281 (285)
Q Consensus 268 ~~s~~~~v~l~~~~ 281 (285)
-+|++||++++++.
T Consensus 48 ~ttIitFlmvfLIQ 61 (132)
T PF04120_consen 48 ATTIITFLMVFLIQ 61 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777888877753
No 108
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=25.72 E-value=3.2e+02 Score=27.65 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhH
Q 023242 187 FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQE 266 (285)
Q Consensus 187 ~a~vyfl~~K~~~~~p~~~~~~~~~~~~~gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e 266 (285)
+++.|++++ .+ ..|..... +++++ .|....+++++....++++.++.+.+.- + +. .+|.
T Consensus 190 ~~vl~~~~~-~~-~~~~~~~~--~~~~~-~~~ai~~~~l~~~~~~vl~~vli~f~~~-~------~~--~i~~------- 248 (424)
T COG1055 190 LVVLYLLFR-RK-VIPERYDD--LLLLD-PREAIRDRALFKLSLVVLALVLIAFLLL-P------FL--GIPV------- 248 (424)
T ss_pred HHHHHHHHH-hh-hccccchh--hcccC-hhcccccHHHHHHHHHHHHHHHHHHHhh-c------cc--CCCH-------
Confidence 678888886 22 22211111 11111 3333466677787777777766555431 1 12 3444
Q ss_pred HHHHHHHHHHHHHHhh
Q 023242 267 LIVTGSSAVLLFIMAS 282 (285)
Q Consensus 267 ~~~s~~~~v~l~~~~s 282 (285)
.+++++..++||+.+.
T Consensus 249 ~~val~~a~ill~~~~ 264 (424)
T COG1055 249 SLVALVGAAILLLLAR 264 (424)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5678888888887654
No 109
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=1.8e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=19.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHhh
Q 023242 67 YEVLGVNPIEGFDMVKAVYAKKRK 90 (285)
Q Consensus 67 YevLGV~~~AS~eEIk~AYRrl~l 90 (285)
-+..|.+|-|+.+||+.|-+..+.
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVR 29 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVR 29 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHH
Confidence 356799999999999999665555
No 110
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=20 Score=38.87 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=24.6
Q ss_pred ccccccCCcchHhhhhcccccccCCCCcc
Q 023242 5 VSNVFHCPKAEVSLRNFNSRASISRFPPS 33 (285)
Q Consensus 5 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 33 (285)
=+|+-||.||.-|+--++ |+.+.++|+-
T Consensus 263 G~nAYhCeKCdeK~~Tvk-Rt~ik~LPsv 290 (944)
T KOG1866|consen 263 GANAYHCEKCDEKVDTVK-RTCIKKLPSV 290 (944)
T ss_pred CcchhhhhhhhhhhHhHH-HHHHhhCChh
Confidence 379999999999988887 9999999874
No 111
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.10 E-value=1.1e+02 Score=26.53 Aligned_cols=13 Identities=15% Similarity=0.795 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHH
Q 023242 224 RLLRCLALVFGVI 236 (285)
Q Consensus 224 rl~~~~~Lv~G~~ 236 (285)
+++++..+|+|.+
T Consensus 5 ~i~~i~~iilgil 17 (191)
T PF04156_consen 5 RIISIILIILGIL 17 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3566666777764
No 112
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=23.73 E-value=2.3e+02 Score=22.07 Aligned_cols=51 Identities=16% Similarity=-0.076 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHH
Q 023242 224 RLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFI 279 (285)
Q Consensus 224 rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~ 279 (285)
|.+--+|+..+..+|.+++.+.++ .+..+...+.|--=.+..++.++.||.
T Consensus 21 R~f~y~a~~aSa~iG~~i~~~rl~-----a~~~l~~~l~nlaI~igava~~~~L~~ 71 (75)
T PF11998_consen 21 RRFFYGAFGASAGIGLFIFLFRLI-----AGPDLNEALPNLAIQIGAVALFAFLFR 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----cCccHHHHhhhHhHHHHHHHHHHHHHH
Confidence 777788888888888887754444 233333222121113344555566653
No 113
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.27 E-value=74 Score=23.80 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhh
Q 023242 228 CLALVFGVIAVSSLA 242 (285)
Q Consensus 228 ~~~Lv~G~~~gs~l~ 242 (285)
++|+++|.++|+.++
T Consensus 2 ~~g~l~Ga~~Ga~~g 16 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAG 16 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888998888876
No 114
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=22.17 E-value=1.7e+02 Score=28.27 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023242 225 LLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~ 242 (285)
+++++|.++|.++|..+.
T Consensus 323 ~~~~~g~~~G~~lg~~~~ 340 (412)
T PRK11146 323 LAGLKGSLIGVVIGVVVS 340 (412)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777777766554
No 115
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=21 Score=31.40 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=12.0
Q ss_pred ccccccccCCcchHh
Q 023242 3 MTVSNVFHCPKAEVS 17 (285)
Q Consensus 3 ~~~~~~~~c~~~~~~ 17 (285)
.+|+..++||.||..
T Consensus 39 ~~Lt~~LRCp~CQNq 53 (153)
T COG3088 39 RALTEELRCPQCQNQ 53 (153)
T ss_pred HHHHHhcCCCcCCCC
Confidence 467778999999875
No 116
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.59 E-value=93 Score=25.76 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 98 EATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 98 e~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
.+..++.++|||.+.++++.+|-+
T Consensus 65 ~~Q~k~Ye~a~~~~~~~~lqkRle 88 (104)
T PF11460_consen 65 MQQRKDYEEAVDQLTNEELQKRLE 88 (104)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678888999999999999998887
No 117
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.46 E-value=5.8e+02 Score=22.63 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHHH
Q 023242 221 MGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIM 280 (285)
Q Consensus 221 ~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~ 280 (285)
+.|+++-..+.++-|++.-.+ +.+++ +.....+|+|. =.++.++++++-|..
T Consensus 146 ~~k~~~~~~~~~~~w~~~~~~--~~~lp--~~inp~l~~~~----~iiig~i~~~~~~~l 197 (206)
T PF06570_consen 146 WWKYILISVLAMVLWIVIFVL--TSFLP--PVINPVLPPWV----YIIIGVIAFALRFYL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHcc--ccCCcCCCHHH----HHHHHHHHHHHHHHH
Confidence 345555555444444443333 35543 23344566654 556677777766654
No 118
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.23 E-value=2e+02 Score=27.77 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=39.2
Q ss_pred CCCcccccCCCC-CCCHHHHHHHHHHHhhhh-------cCC---------CcHHHHHHHHHHHHHhhcHH
Q 023242 63 ELNPYEVLGVNP-IEGFDMVKAVYAKKRKEA-------ERN---------NDEATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 63 ~~dpYevLGV~~-~AS~eEIk~AYRrl~l~~-------~~~---------gde~~f~~Ie~AYd~L~~~~ 115 (285)
...-++.||++. +.|.+|+++-.+++.... ... +.++.++++.+||+.+.++-
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~ 150 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERY 150 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 456678999998 899999998877776621 111 12788899999999887643
No 119
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=20.98 E-value=1.7e+02 Score=21.79 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 94 RNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 94 ~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
..||++.+++|-+=|+-.+. ++..|.-.+.+|++
T Consensus 8 ~~GD~~A~~~IL~~y~~yI~-kls~r~~~d~~g~~ 41 (65)
T PF12645_consen 8 KQGDPEAMEEILKHYEPYIS-KLSTRTLYDEYGNV 41 (65)
T ss_pred HcCCHHHHHHHHHHHHHHHH-HHHHhhcccccCCc
Confidence 58999999999999998776 45667555555554
No 120
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=20.91 E-value=2.2e+02 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023242 225 LLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~ 242 (285)
+++++|.++|.++|..+.
T Consensus 322 ~l~l~g~~~G~~lg~~~~ 339 (411)
T TIGR02212 322 LIGVIGTLLGVILGVLLA 339 (411)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777788887776665
No 121
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.36 E-value=3.3e+02 Score=31.79 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=4.9
Q ss_pred hhhHHHHHHHH
Q 023242 222 GKRLLRCLALV 232 (285)
Q Consensus 222 ~~rl~~~~~Lv 232 (285)
.+|+++++.++
T Consensus 113 ~lRliGlLLLL 123 (1355)
T PRK10263 113 SLRIIGVLALI 123 (1355)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 122
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.20 E-value=74 Score=26.65 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 023242 227 RCLALVFGVIAVSSLA 242 (285)
Q Consensus 227 ~~~~Lv~G~~~gs~l~ 242 (285)
.++|||+|.++|.+++
T Consensus 2 ~~i~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIG 17 (128)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3578888888877765
No 123
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17 E-value=1e+02 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023242 225 LLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~ 242 (285)
.+.++|||+|.++|.+++
T Consensus 9 ~~a~igLvvGi~IG~li~ 26 (138)
T COG3105 9 EYALIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567889999999987765
Done!