Query 023242
Match_columns 285
No_of_seqs 259 out of 1348
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xbla_ a.2.3.1 (A:) DnaJ chap 99.5 2.4E-14 1.7E-18 106.5 6.3 64 63-128 2-71 (75)
2 d1gh6a_ a.2.3.1 (A:) Large T a 99.4 6E-14 4.3E-18 111.7 3.5 63 64-128 8-74 (114)
3 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 99.4 2.7E-13 2E-17 101.0 6.2 64 63-128 2-70 (77)
4 d1fafa_ a.2.3.1 (A:) Large T a 99.4 1.6E-13 1.1E-17 103.7 4.8 60 63-122 10-73 (79)
5 d1wjza_ a.2.3.1 (A:) CSL-type 99.3 1E-12 7.6E-17 101.5 5.5 60 62-121 14-85 (94)
6 d1iura_ a.2.3.1 (A:) Hypotheti 99.0 2.6E-11 1.9E-15 92.9 1.4 53 63-115 15-74 (88)
7 d1fpoa1 a.2.3.1 (A:1-76) HSC20 99.0 3.5E-10 2.5E-14 83.4 5.5 55 65-119 2-69 (76)
8 d1nz6a_ a.2.3.1 (A:) Auxilin J 98.8 6.1E-10 4.5E-14 86.5 3.3 53 64-116 33-94 (98)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 21.2 44 0.0032 19.3 3.0 18 225-242 10-27 (32)
10 d1nkzb_ f.3.1.1 (B:) Light-har 20.3 41 0.003 20.8 2.9 29 216-247 12-40 (41)
No 1
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=99.47 E-value=2.4e-14 Score=106.51 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=52.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N---DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.+|+|++|||+++||.+|||+|||++++. ++.. + .+++|++|++||++|+|+. .|+.++.||..
T Consensus 2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~--~R~~YD~~g~~ 71 (75)
T d1xbla_ 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ--KRAAYDQYGHA 71 (75)
T ss_dssp CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSH--HHHHHHHHTTS
T ss_pred CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHH--HHHHHHHhCcc
Confidence 57999999999999999999999999984 3322 2 2678999999999999998 56666666653
No 2
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=99.39 E-value=6e-14 Score=111.73 Aligned_cols=63 Identities=24% Similarity=0.451 Sum_probs=54.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 64 LNPYEVLGVNPIE--GFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 64 ~dpYevLGV~~~A--S~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.|.|++|||+.+| +.++||+|||++++ |++.++++++|++|++||++|+++. +|+.++.+|..
T Consensus 8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~--kR~~YD~~~~~ 74 (114)
T d1gh6a_ 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGV--KYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHH--HSCCSSCCSCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHH--HHHHHhccCCC
Confidence 5789999999999 78899999999999 5677788999999999999999987 56666655543
No 3
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=2.7e-13 Score=100.98 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC---CcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN---NDEATAARLEKAYDKLMMEQLSKRKKGVTFGSF 128 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~---gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~ 128 (285)
.+|+|++|||+++||.+||++|||++++. ++.. ...++|+.|++||++|+|+. +|+.++.||.-
T Consensus 2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~--~R~~YD~~g~~ 70 (77)
T d1hdja_ 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPR--KREIFDRYGEE 70 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHH--HHHHHHHTCGG
T ss_pred CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHH--HHHHHHhhhhh
Confidence 36999999999999999999999999984 2221 33688999999999999999 56666666664
No 4
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=99.37 E-value=1.6e-13 Score=103.66 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHhh--hhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhc
Q 023242 63 ELNPYEVLGVNPIE--GFDMVKAVYAKKRK--EAERNNDEATAARLEKAYDKLMMEQLSKRKKG 122 (285)
Q Consensus 63 ~~dpYevLGV~~~A--S~eEIk~AYRrl~l--~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g 122 (285)
..|+|++|||++++ +.+|||+|||++++ |++.++++++|++|++||++|.++..|.|.+.
T Consensus 10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~ 73 (79)
T d1fafa_ 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHcc
Confidence 36799999999998 99999999999999 56778999999999999999999997777663
No 5
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.29 E-value=1e-12 Score=101.54 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C---------cHHHHHHHHHHHHHhhcHHHHhhhh
Q 023242 62 SELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N---------DEATAARLEKAYDKLMMEQLSKRKK 121 (285)
Q Consensus 62 ~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g---------de~~f~~Ie~AYd~L~~~~lr~R~~ 121 (285)
...|+|+||||+++||.+|||+|||++++. +|.. + .+++|+.|++||++|+|++.|++.+
T Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD 85 (94)
T d1wjza_ 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 347999999999999999999999999984 2211 1 1578999999999999999666654
No 6
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.01 E-value=2.6e-11 Score=92.91 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=44.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-Cc----HHHHHHHHHHHHHhhcHH
Q 023242 63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-ND----EATAARLEKAYDKLMMEQ 115 (285)
Q Consensus 63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-gd----e~~f~~Ie~AYd~L~~~~ 115 (285)
..|+|+||||+++||.+|||+|||++++. +|.. ++ +++|++|++||+.|.++.
T Consensus 15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~ 74 (88)
T d1iura_ 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA 74 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999994 3332 22 678999999999997644
No 7
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=98.95 E-value=3.5e-10 Score=83.40 Aligned_cols=55 Identities=7% Similarity=0.240 Sum_probs=43.3
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHhhh--hcC--C-Cc------HHHHHHHHHHHHHhhcHHHHhh
Q 023242 65 NPYEVLGVNPIEG--FDMVKAVYAKKRKE--AER--N-ND------EATAARLEKAYDKLMMEQLSKR 119 (285)
Q Consensus 65 dpYevLGV~~~AS--~eEIk~AYRrl~l~--~~~--~-gd------e~~f~~Ie~AYd~L~~~~lr~R 119 (285)
|+|++|||+++++ .+|||+|||++++. ++. + ++ ++.++.|++||++|+|+..|..
T Consensus 2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~ 69 (76)
T d1fpoa1 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAE 69 (76)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7899999999654 89999999999983 322 1 11 4677899999999999985444
No 8
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=98.83 E-value=6.1e-10 Score=86.47 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=44.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhhh--hcC-CC------cHHHHHHHHHHHHHhhcHHH
Q 023242 64 LNPYEVLGVNPIEGFDMVKAVYAKKRKE--AER-NN------DEATAARLEKAYDKLMMEQL 116 (285)
Q Consensus 64 ~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~-~g------de~~f~~Ie~AYd~L~~~~l 116 (285)
.+.|++||+++.+|.+|||+|||++++. +|. .+ .++.|++|++||++|+|+..
T Consensus 33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~ 94 (98)
T d1nz6a_ 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 94 (98)
T ss_dssp CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 5679999999999999999999999993 321 11 15789999999999999873
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.17 E-value=44 Score=19.31 Aligned_cols=18 Identities=22% Similarity=-0.014 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023242 225 LLRCLALVFGVIAVSSLA 242 (285)
Q Consensus 225 l~~~~~Lv~G~~~gs~l~ 242 (285)
++.++-.++||-+|.+|.
T Consensus 10 ~lsfglifvgwglgalll 27 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHh
Confidence 566666667777776653
No 10
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=20.30 E-value=41 Score=20.80 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=19.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 023242 216 GRALRMGKRLLRCLALVFGVIAVSSLAYTGIL 247 (285)
Q Consensus 216 gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l 247 (285)
-+-+..|.|.++..+++.=.++- +|||||
T Consensus 12 Hk~vIdGtRvF~~iA~~AH~La~---~~tPWL 40 (41)
T d1nkzb_ 12 HKYVIDGTRVFLGLALVAHFLAF---SATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHSSTT
T ss_pred HHHhhcchHHHHHHHHHHHHHHH---HhCccc
Confidence 45567788888888877655432 347885
Done!