Query 023243
Match_columns 285
No_of_seqs 315 out of 1340
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 2.8E-21 6E-26 141.6 7.6 61 73-133 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 1.9E-20 4.1E-25 138.9 8.2 63 74-136 1-63 (64)
3 PHA00280 putative NHN endonucl 99.5 6.5E-14 1.4E-18 117.2 6.6 73 52-127 46-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.1 1.3E-10 2.9E-15 83.0 5.6 52 73-124 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 72.7 14 0.00031 25.4 5.5 37 85-121 1-41 (46)
6 cd00801 INT_P4 Bacteriophage P 61.8 16 0.00035 33.2 5.2 38 84-121 10-49 (357)
7 PHA02601 int integrase; Provis 59.4 15 0.00031 34.0 4.5 44 77-121 2-46 (333)
8 PRK09692 integrase; Provisiona 51.2 41 0.00088 32.5 6.2 36 78-113 33-74 (413)
9 PF13356 DUF4102: Domain of un 49.5 50 0.0011 25.4 5.4 33 84-116 35-69 (89)
10 PF05036 SPOR: Sporulation rel 41.3 36 0.00078 24.2 3.3 25 94-118 41-65 (76)
11 PF10729 CedA: Cell division a 33.4 73 0.0016 25.1 3.9 38 72-112 30-67 (80)
12 PF14112 DUF4284: Domain of un 30.1 34 0.00073 28.6 1.7 18 97-114 2-19 (122)
13 PF08846 DUF1816: Domain of un 27.7 1.1E+02 0.0025 23.5 4.1 37 85-121 9-45 (68)
14 PF08471 Ribonuc_red_2_N: Clas 23.8 83 0.0018 25.8 2.9 20 102-121 71-90 (93)
15 PF00352 TBP: Transcription fa 22.8 2.4E+02 0.0053 21.6 5.3 45 74-121 37-82 (86)
16 PF07494 Reg_prop: Two compone 22.4 81 0.0017 18.9 2.0 11 95-105 14-24 (24)
17 PHA03308 transcriptional regul 22.2 99 0.0021 34.2 3.8 11 118-128 1332-1342(1463)
18 PHA02757 hypothetical protein; 20.2 36 0.00077 26.5 0.1 13 1-13 44-56 (75)
19 PHA03308 transcriptional regul 20.2 57 0.0012 35.9 1.6 6 74-79 1307-1312(1463)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.85 E-value=2.8e-21 Score=141.63 Aligned_cols=61 Identities=64% Similarity=1.093 Sum_probs=57.9
Q ss_pred CceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023243 73 PTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133 (285)
Q Consensus 73 S~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s 133 (285)
|+||||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 5899999998899999999966699999999999999999999999999999999999985
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.83 E-value=1.9e-20 Score=138.88 Aligned_cols=63 Identities=60% Similarity=1.043 Sum_probs=59.5
Q ss_pred ceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 023243 74 TYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHE 136 (285)
Q Consensus 74 ~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s~~~ 136 (285)
+||||+++++|||+|+|+.|.+++++|||+|+|+||||+|||.|+++++|..+.+|||.+.+.
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599999898899999999999999999999999999999999999999999999999987553
No 3
>PHA00280 putative NHN endonuclease
Probab=99.47 E-value=6.5e-14 Score=117.20 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=63.5
Q ss_pred ccCCCCccccCccCCCCCCCCCceeEEEeC-CCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 023243 52 KTASDNDHHESKTRKVSDLKHPTYRGVRMR-QWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAY 127 (285)
Q Consensus 52 ~~~s~~~~kr~~~~~~~~~~sS~YRGVr~r-~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~ 127 (285)
++...+..++..+++.+++++|+||||.++ ..|||+|+|+. +||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus 46 NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 46 NLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred HhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 455566677777777778899999999987 56999999999 999999999999999999997 77889999875
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.11 E-value=1.3e-10 Score=83.03 Aligned_cols=52 Identities=31% Similarity=0.505 Sum_probs=45.5
Q ss_pred CceeEEEeC-CCCcEEEEEecCCC---CeEeeccCCCCHHHHHHHHHHHHHHhcCC
Q 023243 73 PTYRGVRMR-QWGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKGH 124 (285)
Q Consensus 73 S~YRGVr~r-~~GkW~AeIr~p~~---~kriwLGtF~T~EeAArAYD~AAl~l~G~ 124 (285)
|+|+||+++ ..++|+|+|+++.. +++++||.|+++|+|++||+.+++.++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 589999877 57999999999522 49999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=72.66 E-value=14 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=28.8
Q ss_pred cEEEEEe--cC--CCCeEeeccCCCCHHHHHHHHHHHHHHh
Q 023243 85 KWVSEIR--EP--RKKSRIWLGTFATPEMAARAHDVAALAI 121 (285)
Q Consensus 85 kW~AeIr--~p--~~~kriwLGtF~T~EeAArAYD~AAl~l 121 (285)
+|...|. .+ ++.++++-+-|.|..||-.+.......+
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 5788883 44 3447889999999999999988876665
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=61.81 E-value=16 Score=33.21 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=27.7
Q ss_pred CcEEEEEecCCCCeEeeccCCC--CHHHHHHHHHHHHHHh
Q 023243 84 GKWVSEIREPRKKSRIWLGTFA--TPEMAARAHDVAALAI 121 (285)
Q Consensus 84 GkW~AeIr~p~~~kriwLGtF~--T~EeAArAYD~AAl~l 121 (285)
+.|..+++..++.+++.||+|+ +.++|..........+
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5799999997677788999996 6677776665544433
No 7
>PHA02601 int integrase; Provisional
Probab=59.36 E-value=15 Score=34.01 Aligned_cols=44 Identities=32% Similarity=0.393 Sum_probs=29.7
Q ss_pred EEEeCCCCcEEEEEecC-CCCeEeeccCCCCHHHHHHHHHHHHHHh
Q 023243 77 GVRMRQWGKWVSEIREP-RKKSRIWLGTFATPEMAARAHDVAALAI 121 (285)
Q Consensus 77 GVr~r~~GkW~AeIr~p-~~~kriwLGtF~T~EeAArAYD~AAl~l 121 (285)
+|++.+.|+|.++++.. ..|+|+. .+|.|..||-+........+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 46666779999999852 2356655 36999988876655544433
No 8
>PRK09692 integrase; Provisional
Probab=51.24 E-value=41 Score=32.47 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=23.0
Q ss_pred EEeCCCC--cEEEEEecCC--CCeEeeccCCC--CHHHHHHH
Q 023243 78 VRMRQWG--KWVSEIREPR--KKSRIWLGTFA--TPEMAARA 113 (285)
Q Consensus 78 Vr~r~~G--kW~AeIr~p~--~~kriwLGtF~--T~EeAArA 113 (285)
|+.++.| .|+.+.+.+. +.+++-||.|+ |..+|..+
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~ 74 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNY 74 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHH
Confidence 4444544 4999887653 33457899999 66565443
No 9
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=49.50 E-value=50 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=23.1
Q ss_pred CcEEEEEecCCCCeEeeccCCCC--HHHHHHHHHH
Q 023243 84 GKWVSEIREPRKKSRIWLGTFAT--PEMAARAHDV 116 (285)
Q Consensus 84 GkW~AeIr~p~~~kriwLGtF~T--~EeAArAYD~ 116 (285)
..|.-+.+..++.+++.||.|+. ..+|......
T Consensus 35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~ 69 (89)
T PF13356_consen 35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKARE 69 (89)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHH
T ss_pred eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHH
Confidence 35998888866667899999986 4455444433
No 10
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=41.33 E-value=36 Score=24.23 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCCeEeeccCCCCHHHHHHHHHHHH
Q 023243 94 RKKSRIWLGTFATPEMAARAHDVAA 118 (285)
Q Consensus 94 ~~~kriwLGtF~T~EeAArAYD~AA 118 (285)
...-||.+|.|++.++|..+-....
T Consensus 41 ~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 41 GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHh
Confidence 3456889999999999988876544
No 11
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=33.37 E-value=73 Score=25.06 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHH
Q 023243 72 HPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAAR 112 (285)
Q Consensus 72 sS~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAAr 112 (285)
--+||-|..-+ |||+|.+-. +..-..--.|..+|.|-|
T Consensus 30 ~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 30 MDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHH
T ss_pred cccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHH
Confidence 34688885545 999999988 554444567888887765
No 12
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=30.07 E-value=34 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=13.9
Q ss_pred eEeeccCCCCHHHHHHHH
Q 023243 97 SRIWLGTFATPEMAARAH 114 (285)
Q Consensus 97 kriwLGtF~T~EeAArAY 114 (285)
..||||+|.+.++-..=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 469999999988766543
No 13
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=27.68 E-value=1.1e+02 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHh
Q 023243 85 KWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAI 121 (285)
Q Consensus 85 kW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l 121 (285)
.|=++|.--.-.-..|.|-|.|.+||..+.---..-+
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL 45 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDL 45 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHH
Confidence 5667887755557789999999999998865444444
No 14
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=23.76 E-value=83 Score=25.78 Aligned_cols=20 Identities=35% Similarity=0.306 Sum_probs=17.2
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 023243 102 GTFATPEMAARAHDVAALAI 121 (285)
Q Consensus 102 GtF~T~EeAArAYD~AAl~l 121 (285)
|+|+|+|+|..-||.-+..|
T Consensus 71 GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 71 GYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999866544
No 15
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.79 E-value=2.4e+02 Score=21.63 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=33.9
Q ss_pred ceeEEEeC-CCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHh
Q 023243 74 TYRGVRMR-QWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAI 121 (285)
Q Consensus 74 ~YRGVr~r-~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l 121 (285)
+|.||..| ..-+-...|.. .|+-+..|. .++|+|..|.+.....+
T Consensus 37 ~fpgl~~r~~~p~~t~~IF~--sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 37 RFPGLIYRLRNPKATVLIFS--SGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TESSEEEEETTTTEEEEEET--TSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred cCCeEEEeecCCcEEEEEEc--CCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 68898766 43566777777 888887775 68899999988876654
No 16
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.37 E-value=81 Score=18.91 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=8.5
Q ss_pred CCeEeeccCCC
Q 023243 95 KKSRIWLGTFA 105 (285)
Q Consensus 95 ~~kriwLGtF~ 105 (285)
+..+||+||+.
T Consensus 14 ~~G~lWigT~~ 24 (24)
T PF07494_consen 14 SDGNLWIGTYN 24 (24)
T ss_dssp TTSCEEEEETS
T ss_pred CCcCEEEEeCC
Confidence 55689999974
No 17
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=22.19 E-value=99 Score=34.18 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=7.0
Q ss_pred HHHhcCCCCCC
Q 023243 118 ALAIKGHSAYL 128 (285)
Q Consensus 118 Al~l~G~~A~l 128 (285)
|...||++.++
T Consensus 1332 avaawgrdtvi 1342 (1463)
T PHA03308 1332 AVAAWGRDTVI 1342 (1463)
T ss_pred HHHHhcccccc
Confidence 34457888763
No 18
>PHA02757 hypothetical protein; Provisional
Probab=20.24 E-value=36 Score=26.45 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=11.2
Q ss_pred CCccccccccccc
Q 023243 1 MEVSLNTENEAQA 13 (285)
Q Consensus 1 m~~~~~~~~d~~~ 13 (285)
|||-||.|+|+++
T Consensus 44 kdK~CiiE~de~s 56 (75)
T PHA02757 44 KDKACIIEIDEDS 56 (75)
T ss_pred ccceEEEEEcCCC
Confidence 7899999998874
No 19
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=20.24 E-value=57 Score=35.89 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=2.9
Q ss_pred ceeEEE
Q 023243 74 TYRGVR 79 (285)
Q Consensus 74 ~YRGVr 79 (285)
.|||.+
T Consensus 1307 a~~g~~ 1312 (1463)
T PHA03308 1307 VYRGRD 1312 (1463)
T ss_pred hhhhhh
Confidence 455543
Done!