Query 023243
Match_columns 285
No_of_seqs 315 out of 1340
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.1E-26 2.4E-30 168.0 6.3 60 74-133 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 88.4 0.3 1E-05 37.3 3.0 27 70-98 3-30 (77)
3 1u3e_M HNH homing endonuclease 75.8 0.47 1.6E-05 39.9 -0.4 38 75-115 109-146 (174)
4 3jtz_A Integrase; four strande 70.0 8.5 0.00029 29.2 5.5 44 78-121 28-75 (88)
5 1z1b_A Integrase; protein-DNA 67.0 6.3 0.00022 34.6 4.8 39 77-119 15-53 (356)
6 3ju0_A Phage integrase; four s 53.6 20 0.0007 28.2 5.1 44 78-121 28-75 (108)
7 1x60_A Sporulation-specific N- 34.6 20 0.00069 25.5 2.1 24 95-118 44-67 (79)
8 1uta_A FTSN, MSGA, cell divisi 31.2 41 0.0014 24.2 3.3 25 95-119 44-68 (81)
9 2ftc_I Mitochondrial ribosomal 21.5 1.2E+02 0.0041 24.3 4.7 36 85-122 79-114 (118)
10 2bn8_A CEDA, cell division act 14.5 77 0.0026 24.1 1.8 38 72-112 37-74 (87)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=7.1e-26 Score=168.00 Aligned_cols=60 Identities=57% Similarity=0.959 Sum_probs=57.4
Q ss_pred ceeEEEeCCCCcEEEEEecCCC-CeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023243 74 TYRGVRMRQWGKWVSEIREPRK-KSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133 (285)
Q Consensus 74 ~YRGVr~r~~GkW~AeIr~p~~-~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s 133 (285)
+||||++|+||||+|+|++|.+ +++||||||+|+||||+|||.||++++|.++.||||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999974 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.41 E-value=0.3 Score=37.33 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCCceeEEEeC-CCCcEEEEEecCCCCeE
Q 023243 70 LKHPTYRGVRMR-QWGKWVSEIREPRKKSR 98 (285)
Q Consensus 70 ~~sS~YRGVr~r-~~GkW~AeIr~p~~~kr 98 (285)
..+|+|+||.|. +.+.|.|+-.+ +++|
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 467899999888 66999999998 4544
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=75.80 E-value=0.47 Score=39.90 Aligned_cols=38 Identities=5% Similarity=-0.051 Sum_probs=28.8
Q ss_pred eeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHH
Q 023243 75 YRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHD 115 (285)
Q Consensus 75 YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD 115 (285)
++||.+...++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456644333578888887 4 5678999999999999965
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=70.00 E-value=8.5 Score=29.23 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=30.6
Q ss_pred EEeCCCC--cEEEEEecCCCCeEeeccCCC--CHHHHHHHHHHHHHHh
Q 023243 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFA--TPEMAARAHDVAALAI 121 (285)
Q Consensus 78 Vr~r~~G--kW~AeIr~p~~~kriwLGtF~--T~EeAArAYD~AAl~l 121 (285)
|+.++.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 599888886666789999998 5777776666555444
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=67.00 E-value=6.3 Score=34.60 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred EEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHH
Q 023243 77 GVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAAL 119 (285)
Q Consensus 77 GVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl 119 (285)
||++++.|+|..+.+. .|+++.+|. |..+|..+...+..
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~ 53 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI 53 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence 5777777899877654 778899996 88887766554433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=53.56 E-value=20 Score=28.16 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=29.8
Q ss_pred EEeCCCC--cEEEEEecCCCCeEeeccCCC--CHHHHHHHHHHHHHHh
Q 023243 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFA--TPEMAARAHDVAALAI 121 (285)
Q Consensus 78 Vr~r~~G--kW~AeIr~p~~~kriwLGtF~--T~EeAArAYD~AAl~l 121 (285)
|+..+.| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444544 599888875566788999998 4677766665544444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.55 E-value=20 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.9
Q ss_pred CCeEeeccCCCCHHHHHHHHHHHH
Q 023243 95 KKSRIWLGTFATPEMAARAHDVAA 118 (285)
Q Consensus 95 ~~kriwLGtF~T~EeAArAYD~AA 118 (285)
.--|+++|.|.+.++|.++-+...
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHH
Confidence 336889999999999988866543
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=31.21 E-value=41 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCeEeeccCCCCHHHHHHHHHHHHH
Q 023243 95 KKSRIWLGTFATPEMAARAHDVAAL 119 (285)
Q Consensus 95 ~~kriwLGtF~T~EeAArAYD~AAl 119 (285)
.--|+.+|-|.+.++|.++-+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 4468999999999999888655443
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.55 E-value=1.2e+02 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=29.4
Q ss_pred cEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhc
Q 023243 85 KWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIK 122 (285)
Q Consensus 85 kW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~ 122 (285)
.|+|.|.. +..-+-++...+++.|..|...|+.+|=
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 49999987 6666667776889999999999998873
No 10
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=14.54 E-value=77 Score=24.11 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=25.0
Q ss_pred CCceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHH
Q 023243 72 HPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAAR 112 (285)
Q Consensus 72 sS~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAAr 112 (285)
--+||-|..-+ |||+|.+-. +..-..--.|..+|.|-|
T Consensus 37 md~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqr 74 (87)
T 2bn8_A 37 MDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQR 74 (87)
T ss_dssp TTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHH
T ss_pred cccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 34688886555 999999877 332223356777777654
Done!