BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023244
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/281 (56%), Positives = 212/281 (75%), Gaps = 5/281 (1%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
KGRVCVTGGTGF+ SW+I LL++GYSV TT+R+ DPE + +D+SFL NLPGASE+L
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRA--DPERK--RDVSFLTNLPGASEKLH 56
Query: 65 IFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
F+ADLS+PD F AAI GC G+ H A+P+DF EPEE++T+R ++G LGILK+C+ S T
Sbjct: 57 FFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
VKR +YTSS +AV +N KD D++DE+ WSDVD +R + +G +YA+SKTL E+A LEF E
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176
Query: 185 EHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHI 244
++G+D+VTLI +VG F+CPK S+ +L L+LG +E+ G + MVHVDDVARAHI
Sbjct: 177 QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIG-VTRFHMVHVDDVARAHI 235
Query: 245 FLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPTVE 285
+LLE GRY CS + I+EM++ LSAKYPEY I TV+
Sbjct: 236 YLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVD 276
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 266 bits (681), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 183/278 (65%), Gaps = 9/278 (3%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
VCVTG +GFI SWL+MRLL+ GY+V TVR DP N K + L +LP A L ++
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVR---DP--TNVKKVKHLLDLPKAETHLTLWK 62
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
ADL+ FD AI GCTGV HVATP+DFE K+PE + + I G LGI+KSC + TV+R
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 128 VVYTSSNAAVFYNDKDVDMMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAALEFAEE 185
+V+TSS V + + + DE+ WSD+++ R K+ +W Y +SKTL E+AA ++A+E
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW--MYFVSKTLAEQAAWKYAKE 180
Query: 186 HGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDVARAHIF 245
+ +D +T+IP++VVGPFI S+ ++L+ I GN Y + VH+DD+ AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240
Query: 246 LLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT 283
L E P A+GRYICSSH I ++A+ L KYPEY IPT
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPT 278
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 182/295 (61%), Gaps = 27/295 (9%)
Query: 4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERL 63
GK CV GGTGF+AS L+ LL GY+V TTVR DP+ N K +S L L + L
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR---DPD--NQKKVSHLLELQELGD-L 61
Query: 64 RIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
+IF ADL+ F+A IAGC V HVATPV F ++PE + + AI G + ++K+C ++
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK 121
Query: 124 TVKRVVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIR--KLDSWGKSYAISKTLTERAA 179
+VKRV+ TSS AAV N D ++DE W+D++++ K +WG Y SKTL E+AA
Sbjct: 122 SVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAA 179
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLN--------- 230
+FAEE+ +DL+T+IP+++ G + S+ +++LI GN FL+N
Sbjct: 180 WKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNE----FLINGMKGMQMLS 235
Query: 231 --TSMVHVDDVARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFLSAKYPEYPIPT 283
S+ HV+DV RAHIF+ E A GRYIC + ++ E+A+FLS +YP+Y +PT
Sbjct: 236 GSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPT 290
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V VTG GF+AS ++ +LL+HGY V T RS + + + PG E +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
D+ +D I G GV H+A+ V F +K +EV+T AI GTL L++ + +VKR
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
V TSS + +V+ +DE W +++ I K + +S YA SKT E
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNRE---EYGFLLNTS 232
AA +F +E+ L ++P+ +G P+ S + L N E +
Sbjct: 186 AAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY 245
Query: 233 MVHVDDVARAHIFLLEYPDAKGRYI 257
V D+ H+ L P + R +
Sbjct: 246 YVSAVDIGLLHLGCLVLPQIERRRV 270
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V VTG GF+AS ++ +LL+HGY V T RS + + + PG E +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKR---WDAKYPGRFETAVV-- 68
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVKR 127
D +D I G GV H+A+ V F +K +EV+T AI GTL L++ + +VKR
Sbjct: 69 EDXLKQGAYDEVIKGAAGVAHIASVVSFSNKY-DEVVTP-AIGGTLNALRAAAATPSVKR 126
Query: 128 VVYTSSNAAVFYNDKDVD--MMDETFWSDVDYIRKLDSWGKS--------YAISKTLTER 177
V TSS + +V+ +DE W +++ I K + +S YA SKT E
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW-NLESIDKAKTLPESDPQKSLWVYAASKTEAEL 185
Query: 178 AALEFAEEHG--LDLVTLIPSMVVGPFICPK-------------FAGSVRSSLAL 217
AA +F +E+ L ++P+ +G P+ F G V +LAL
Sbjct: 186 AAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALAL 240
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 105/279 (37%), Gaps = 36/279 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
R+ VTGG GFI S + +LL Y V LD L++ N A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
RLR H D+ + G ++H A + V T+ + GT +L+
Sbjct: 55 PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
+ +G V RVV+ S+N +D W++ + YA SK ++ A
Sbjct: 115 VDAG-VGRVVHVSTNQV-------YGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDD 238
+ +GLD+ GP+ P+ + + L G YG N VH DD
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
Query: 239 VARAHIFLLEYPDAKGR-----YICSSHTLTIQEMAEFL 272
R +L A GR +I LT +E+ L
Sbjct: 223 HCRGIALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 106/279 (37%), Gaps = 36/279 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY-SVTTTVRSELDPEHRNSKDLSFLKNLPG-----AS 60
R+ VTGG GFI S + +LL Y V LD L++ N A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD-------SLTYAGNRANLAPVDAD 54
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDK-EPEEVITQRAINGTLGILKSC 119
RLR H D+ + G ++H A + V T+ + GT +L+
Sbjct: 55 PRLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
+ +G V RVV+ S+ D+ +D W++ + YA SK ++ A
Sbjct: 115 VDAG-VGRVVHVST-------DEVYGSIDSGSWTESSPLEP----NSPYAASKAGSDLVA 162
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNT-SMVHVDD 238
+ +GLD+ GP+ P+ + + L G YG N VH DD
Sbjct: 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
Query: 239 VARAHIFLLEYPDAKGR-----YICSSHTLTIQEMAEFL 272
R +L A GR +I LT +E+ L
Sbjct: 223 HCRGIALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 92/252 (36%), Gaps = 33/252 (13%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
RV VTGG GFI S ++ LL G V LD K + K +P F
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAV-----LD-NLATGKRENVPKGVP-------FF 48
Query: 67 HADLSHPDGFDAAIA--GCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGT 124
DL +G + A T V H A + + V+ L +
Sbjct: 49 RVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG 108
Query: 125 VKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALEFAE 184
V+++V+ S+ A++ + + +ET+ YA SK E + +
Sbjct: 109 VEKLVFASTGGAIYGEVPEGERAEETWPPRPK---------SPYAASKAAFEHYLSVYGQ 159
Query: 185 EHGLDLVTLIPSMVVGPFICPK--------FAGSVRSSLALILGNREEYG-FLLNTSMVH 235
+GL V+L V GP P FA V L + L R+ G V+
Sbjct: 160 SYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVY 219
Query: 236 VDDVARAHIFLL 247
V DVA AH L
Sbjct: 220 VGDVAEAHALAL 231
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S+ A Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPST--AEVYGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 64
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 65 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 117
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 118 CVKYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 171
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 172 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 210
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTG G + + RL + S LDP N +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEE----------------CV 48
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
DL+ + +A +AGC G++H+ ++P E I Q I G + ++ G
Sbjct: 49 QCDLADANAVNAMVAGCDGIVHLG---GISVEKPFEQILQGNIIGLYNLYEAARAHGQ-P 104
Query: 127 RVVYTSSNAAVFY 139
R+V+ SSN + Y
Sbjct: 105 RIVFASSNHTIGY 117
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 1 MEEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGAS 60
ME+ + R+ +TGG GF+ S L +L+ G+ V T V + RN +
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEV-TVVDNFFTGRKRNVEHWI-------GH 52
Query: 61 ERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFED--KEPEEVITQRAINGTLGILKS 118
E + + D+ P + + H+A+P + P + + I GTL +L
Sbjct: 53 ENFELINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPIKTLKTNTI-GTLNMLGL 106
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTL 174
+ G R++ S++ Y D +V E +W V+ I + + +++T+
Sbjct: 107 AKRVGA--RLLLASTSEV--YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETM 158
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTG G + + RL + S LDP N +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEE----------------CV 48
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLKSGTVK 126
DL+ + +A +AGC G++H+ ++P E I Q I G + ++ G
Sbjct: 49 QCDLADANAVNAMVAGCDGIVHLG---GISVEKPFEQILQGNIIGLYNLYEAARAHGQ-P 104
Query: 127 RVVYTSSNAAVFY 139
R+V+ SSN + Y
Sbjct: 105 RIVFASSNHTIGY 117
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 7 RVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
RV + G GFI + L RLL DH + S+ N F++
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE---------- 51
Query: 65 IFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKSCL 120
D+S H + + + C VL +ATP+++ + P V + L I++ C+
Sbjct: 52 ---GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRYCV 106
Query: 121 KSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 107 KYR--KRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRVIW 160
Query: 181 EFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 161 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 197
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D+
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDQ 131
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D+
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDQ 131
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D+
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDQ 131
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D+
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDQ 131
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 27/219 (12%)
Query: 5 KGRVCVTGGTGFIASWLIMRLL--DHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASER 62
+ RV + G GFI + L RLL DH + S+ N F++
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE-------- 366
Query: 63 LRIFHADLS-HPDGFDAAIAGCTGVL---HVATPVDFEDKEPEEVITQRAINGTLGILKS 118
D+S H + + + C VL +ATP+++ + P V + L I++
Sbjct: 367 -----GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPLRVF-ELDFEENLRIIRY 419
Query: 119 CLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERA 178
C+K KR+++ S++ Y DE + + W Y++SK L +R
Sbjct: 420 CVK--YRKRIIFPSTSEV--YGMCSDKYFDEDHSNLIVGPVNKPRW--IYSVSKQLLDRV 473
Query: 179 ALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLAL 217
+ E+ GL P +GP + A + SS A+
Sbjct: 474 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 512
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 22/155 (14%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTT---VRSELDP----EHRNSKDLSFLK-NL 56
KG + VTGG G+I S + LL HGY V V S+ + E K +F + ++
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDV 64
Query: 57 PGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGIL 116
RIF A HP T +H A + + + R +L L
Sbjct: 65 SDERALARIFDA---HP---------ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSL 112
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETF 151
++ VKR+V++SS A Y + +DETF
Sbjct: 113 LRVMRERAVKRIVFSSS--ATVYGVPERSPIDETF 145
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDN 131
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S AA Y D
Sbjct: 109 -SAMRAANVKNFIFSS--AATVYGDN 131
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDN 131
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSV------TTTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++SS A Y D
Sbjct: 109 -SAMRAANVKNFIFSSS--ATVYGDN 131
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S+ A Y D
Sbjct: 109 -SAMRAANVKNFIFSST--ATVYGDN 131
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 8 VCVTGGTGFIASWLIMRLLD--HGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRI 65
+ +TGGTG + ++LD + + R EL +++ N P R+R
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL-----KQSEMAMEFNDP----RMRF 74
Query: 66 FHADLSHPDGFDAAIAGCTGVLHVAT--PVDFEDKEPEEVITQRAINGTLGILKSCLKSG 123
F D+ + + A+ G +H A V + P E I + I G ++ +CLK+
Sbjct: 75 FIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECI-KTNIMGASNVINACLKNA 133
Query: 124 TVKRVVYTSSNAA 136
+ + ++ AA
Sbjct: 134 ISQVIALSTDKAA 146
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 26/146 (17%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT------TTVRSELDP-EHRNSKDLSFLKNLPGA 59
RV VTGG+G+I S ++LL +G+ V + RS L E K +F++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE----G 57
Query: 60 SERLRIFHADLSHPDGFDAAI--AGCTGVLH-VATPVDFEDKEPEEVITQRAINGTLGIL 116
R ++ H D I AG V V P+++ D +NGTL ++
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN---------VNGTLRLI 108
Query: 117 KSCLKSGTVKRVVYTSSNAAVFYNDK 142
S +++ VK +++S A Y D
Sbjct: 109 -SAMRAANVKNFIFSS--VATVYGDN 131
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
+ VTGG GFI S ++ +L + V S + E N E R+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVN--------------EAARLVK 49
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATPVDFE--DKEPEEVITQRAINGTLGILKSCLKSGTV 125
ADL+ D D + G V H+A D + P+E+ + T +L++ K+G V
Sbjct: 50 ADLAADDIKD-YLKGAEEVWHIAANPDVRIGAENPDEIYRNNVL-ATYRLLEAMRKAG-V 106
Query: 126 KRVVYTSSN 134
R+V+TS++
Sbjct: 107 SRIVFTSTS 115
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTGG GFI S L+ +L++ GY V ++ +S F+ P A +R
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVV-------DNLSSGRREFVN--PSAELHVRDL 52
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVIT-QRAINGTLGILKSCLKSGTV 125
D S G + V H A + E ++ + T +L+ ++G V
Sbjct: 53 K-DYSWGAGIKGDV-----VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 105
Query: 126 KRVVYTSSNAAVFYNDKDV 144
+ VV+ SS+ Y D DV
Sbjct: 106 RTVVFASSSTV--YGDADV 122
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 44/288 (15%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVT-----TTVRSELDPEHRNSKDLSFLKNLPGASE 61
+V +TG G I S + LL+ G V T R E +H N L+F++
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPN---LTFVEGSIADHA 79
Query: 62 RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN--GTLGILKSC 119
+ DL PD V+H A K+P++ N G ++++
Sbjct: 80 LVNQLIGDL-QPDA----------VVHTAASY----KDPDDWYNDTLTNCVGGSNVVQAA 124
Query: 120 LKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAA 179
K V R VY + A+ Y K + +D+ R + SYAISK+ E
Sbjct: 125 -KKNNVGRFVYFQT--ALCYGVKPIQQPVR-----LDHPR--NPANSSYAISKSANE--- 171
Query: 180 LEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVHVDDV 239
++ E GLD VT + VVGP +G + + ++ + V V D+
Sbjct: 172 -DYLEYSGLDFVTFRLANVVGP---RNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDL 227
Query: 240 ARAHIFLLEYPDAKGRYICSSHTLTIQEMAEFL--SAKYPEYPIPTVE 285
ARA + ++ + S + I+E+ + + + P YP P +
Sbjct: 228 ARATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR 275
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIF 66
R+ VTGG GFI S L+ +L++ GY V +D R++ G S L +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVV-----VDIVQRDT----------GGSAELHV- 45
Query: 67 HADLSHPDGFDAAIAGCTGVLHVATP-VDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
DL + A I G A P V EP + + T +L+ ++G V
Sbjct: 46 -RDLKDYS-WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVV-ATFNVLEWARQTG-V 101
Query: 126 KRVVYTSSNAAVFYNDKDV 144
+ VV+ SS+ Y D DV
Sbjct: 102 RTVVFASSSTV--YGDADV 118
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 8 VCVTGGTGFIASWLI---MRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPG------ 58
V +TG TGF+ +L+ +R LD + VR+E D + R + +F P
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 59 --ASERLRIFHADLSHPD-GFD 77
A++RL + D S PD G D
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLD 157
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 2 EEGKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASE 61
E+ + R+ +TGG GF+ S L +L G+ V T V + RN + E
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEV-TVVDNFFTGRKRNVEHWI-------GHE 75
Query: 62 RLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAINGTLGILKSCLK 121
+ + D+ P + + H+A+P + + T + T+G L
Sbjct: 76 NFELINHDVVEPLYIE-----VDQIYHLASPASPPNYXYNPIKTLKT--NTIGTLNXL-- 126
Query: 122 SGTVKRV---VYTSSNAAVFYNDKDVDMMDETFWSDVDYI 158
G KRV + +S + V Y D +V E +W V+ I
Sbjct: 127 -GLAKRVGARLLLASTSEV-YGDPEVHPQSEDYWGHVNPI 164
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
V V GG GF+ S L+ RLL+ G + V + L E N D ++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVR------------F 82
Query: 68 ADLSHPDGFDAAIAGCTG----VLHVATPVDFEDKEPEEVITQRAINGTLGILK--SCLK 121
++ S D DA +A V H+AT + + + N TL LK LK
Sbjct: 83 SETSITD--DALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE--NNTLTTLKLYERLK 138
Query: 122 S-GTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAAL 180
+K+VVY+++ ++ +K D T +D+ + DS Y++SK E ++
Sbjct: 139 HFKRLKKVVYSAAGCSIA--EKTFDDAKATEETDIVSLHNNDS---PYSMSKIFGEFYSV 193
Query: 181 EFAEEHGLDLVTLIPSMVVGP 201
+ ++H L V V GP
Sbjct: 194 YYHKQHQLPTVRARFQNVYGP 214
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 37/257 (14%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLRIFH 67
+ + GG G+I S + +L+D G SV + E ++ F R + F
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYN----GDLRDKAFL 59
Query: 68 ADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAINGTLGILKSCLKSGTV 125
D+ + +A V+H A V ++P + + G L +L+ + V
Sbjct: 60 RDVFTQENIEA-------VMHFAADSLVGVSMEKPLQYYNNN-VYGALCLLE-VMDEFKV 110
Query: 126 KRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKS-YAISKTL---TERAALE 181
+ +++S+ A Y + DVD++ E ++ +++G++ AI K L ++ + L
Sbjct: 111 DKFIFSST--AATYGEVDVDLITEETMTN-----PTNTYGETKLAIEKMLHWYSQASNLR 163
Query: 182 FAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREE---YGFLLNT------- 231
+ ++ P+ ++G P+ + L + LG RE+ +G NT
Sbjct: 164 YKIFRYFNVAGATPNGIIGEDHRPE-THLIPLVLQVALGQREKIMMFGDDYNTPDGTCIR 222
Query: 232 SMVHVDDVARAHIFLLE 248
+HV+D+ AH L+
Sbjct: 223 DYIHVEDLVAAHFLGLK 239
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 234 VHVDDVARAHIFLLEY-----PDAKGRY-----ICSSHTLTIQEMAEFLSAKYPEYPIPT 283
VHV D+A AHI L+Y P+ K +Y + +S +++E+ E ++ K +PIP
Sbjct: 273 VHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIE-VARKTTGHPIPV 331
Query: 284 VE 285
E
Sbjct: 332 RE 333
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 245 FLLEYPDAKGRYICSSH 261
F+ +YPDAK R++C+SH
Sbjct: 209 FISKYPDAKVRFLCNSH 225
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 50 LSFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAI 109
LS + +L A I DL+ + C G++H+ V E P I Q I
Sbjct: 31 LSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGG-VSVE--RPWNDILQANI 87
Query: 110 NGTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYA 169
G + ++ G R+V+ SSN + Y + + D + R+ DS Y
Sbjct: 88 IGAYNLYEAARNLGK-PRIVFASSNHTIGYYPRTTRI-------DTEVPRRPDS---LYG 136
Query: 170 ISKTLTERAALEFAEEHGLDLVTL 193
+SK E A + H D+ TL
Sbjct: 137 LSKCFGEDLASLYY--HKFDIETL 158
>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|A Chain A, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|A Chain A, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|A Chain A, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|A Chain A, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|A Chain A, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|A Chain A, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 274
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 203 ICPKFAGSVRSSLALIL--GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSS 260
I +F G L I+ R++ G + + D A I LL Y D + RYI +
Sbjct: 48 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 107
Query: 261 HTLTI 265
LT+
Sbjct: 108 EGLTV 112
>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
Length = 275
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 203 ICPKFAGSVRSSLALIL--GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSS 260
I +F G L I+ R++ G + + D A I LL Y D + RYI +
Sbjct: 49 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 108
Query: 261 HTLTI 265
LT+
Sbjct: 109 EGLTV 113
>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|A Chain A, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 270
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 203 ICPKFAGSVRSSLALIL--GNREEYGFLLNTSMVHVDDVARAHIFLLEYPDAKGRYICSS 260
I +F G L I+ R++ G + + D A I LL Y D + RYI +
Sbjct: 46 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 105
Query: 261 HTLTI 265
LT+
Sbjct: 106 EGLTV 110
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGY 30
+V VTGG G+I S ++ LL+ GY
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 3 EGKGRVCVTGGTGFIASWLIMRLLD-----HGYSVTTTVRSELDPEHR----NSKDLSFL 53
+GK RV VTG TGF WL + L GYS+T L R ++ +
Sbjct: 8 QGK-RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDI 66
Query: 54 KNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATP--VDFEDKEPEEVITQRAING 111
++ E +R F ++ V H+A V EP E + + G
Sbjct: 67 RDQNKLLESIREFQPEI---------------VFHMAAQPLVRLSYSEPVETYSTNVM-G 110
Query: 112 TLGILKSCLKSGTVKRVVYTSSNAAVFYNDKD 143
T+ +L++ G VK VV +S+ Y++K+
Sbjct: 111 TVYLLEAIRHVGGVKAVVNITSDKC--YDNKE 140
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 112/285 (39%), Gaps = 44/285 (15%)
Query: 4 GKGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVR-SELDPEHRNSKDLSFLKNLPGASER 62
G R +TG GF+ +L L + V T R +E + L + S+R
Sbjct: 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMD-----SQR 65
Query: 63 LRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVIT-QRAINGTLGILKSCLK 121
++ +D+ PD + H+A +D + T + GTL +L +
Sbjct: 66 VKKVISDI-KPD----------YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRD 114
Query: 122 SGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAISKTLTERAALE 181
S R++ S+ + + + +E+ S+ + +R + +G +SK A +
Sbjct: 115 SNLDCRILTIGSS-----EEYGMILPEESPVSEENQLRPMSPYG----VSKASVGMLARQ 165
Query: 182 FAEEHGLDLVTLIPSMVVGP-----FICPKFAGSV------RSSLALILGNREEYGFLLN 230
+ + +G+D++ +GP F+ FA + + + +GN E
Sbjct: 166 YVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAV----- 220
Query: 231 TSMVHVDDVARAHIFLLEYPDAKGRY-ICSSHTLTIQEMAEFLSA 274
V D+ +A+ L +Y Y +CS IQ++ + L A
Sbjct: 221 RDFTDVRDIVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLA 265
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 8 VCVTGGTGFIASWLIMRLLDHGY 30
V VTGG G+I S ++ L+++GY
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGY 36
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 5 KGRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELDP------------------EHRN 46
K R+ +TGG GFI L L+ G VT + P E R+
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD 66
Query: 47 SKDLSFLKNLPGASERLRIFHADLSHPDGFDAA---IAGCTGV 86
D+ + +L R F L + D D+ +A CT V
Sbjct: 67 LSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSV 109
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 7 RVCVTGGTGFIASWLIMRLLDH--GYSVTTTVRSELDPEHRNSKDLSFLKNLPGASERLR 64
++ VTGG GFI S I +L+ + V + N KDL R
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE-------DDPRYT 57
Query: 65 IFHADLSHPDGFDAAIAGCTGVLHVA--TPVDFEDKEPEEVITQRAINGTLGILKSCLKS 122
D++ + + GV+H+A + VD PE + I GT +L+S +
Sbjct: 58 FVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVI-GTYTLLESIRRE 116
Query: 123 GTVKRVVYTSSN 134
R V+ S++
Sbjct: 117 NPEVRFVHVSTD 128
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 7 RVCVTGGTGFIASWLIMRLLDHGYSVTTTVR 37
RV V GGTGFI + L L G+ VT R
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSR 32
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 35/199 (17%)
Query: 6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELD---------------PEHRNSKDL 50
G +TG TGF+ ++LI L + + + +R++ + E L
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMML 210
Query: 51 SFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN 110
S ++ + G E + D+ P+ D I H +D E E+V Q
Sbjct: 211 SNIEVIVGDFECM----DDVVLPENMDTIIHAGARTDHFG-----DDDEFEKVNVQ---- 257
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAI 170
GT+ +++ L R++Y S+ + Y D+D D TF S+ D + K Y
Sbjct: 258 GTVDVIR--LAQQHHARLIYVSTISVGTY--FDIDTEDVTF-SEAD-VYKGQLLTSPYTR 311
Query: 171 SKTLTERAALEFAEEHGLD 189
SK +E LE A +GLD
Sbjct: 312 SKFYSELKVLE-AVNNGLD 329
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 3 EGKGRVCVTGGTGFIASWLIMRLLDHG 29
+GK RV VTG TGF SWL + L + G
Sbjct: 8 QGK-RVFVTGHTGFKGSWLSLWLTEMG 33
>pdb|1WA9|A Chain A, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
pdb|1WA9|B Chain B, Crystal Structure Of The Pas Repeat Region Of The
Drosophila Clock Protein Period
Length = 368
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 120 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 177
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 178 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 209
>pdb|2VVT|A Chain A, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
pdb|2VVT|B Chain B, Glutamate Racemase (Muri) From E. Faecalis In Complex With
A 9-Benzyl Purine Inhibitor
Length = 290
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK 160
G L +LK LK +R++Y A Y + + + + W D++ K
Sbjct: 35 GGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLK 84
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 6 GRVCVTGGTGFIASWLIMRLLDHGYSVTTTVRSELD---------------PEHRNSKDL 50
G +TG TGF+ ++LI L + + + +R++ + E L
Sbjct: 70 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 51 SFLKNLPGASERLRIFHADLSHPDGFDAAIAGCTGVLHVATPVDFEDKEPEEVITQRAIN 110
S ++ + G E D+ P+ D I H +D E E+V Q
Sbjct: 130 SNIEVIVGDFE----CXDDVVLPENXDTIIHAGARTDHFG-----DDDEFEKVNVQ---- 176
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRKLDSWGKSYAI 170
GT+ +++ L R++Y S+ + Y D+D D TF S+ D + K Y
Sbjct: 177 GTVDVIR--LAQQHHARLIYVSTISVGTY--FDIDTEDVTF-SEAD-VYKGQLLTSPYTR 230
Query: 171 SKTLTERAALEFAEEHGLD 189
SK +E LE A +GLD
Sbjct: 231 SKFYSELKVLE-AVNNGLD 248
>pdb|3RTY|A Chain A, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|B Chain B, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|C Chain C, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|D Chain D, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|E Chain E, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|F Chain F, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|G Chain G, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
pdb|3RTY|H Chain H, Structure Of An Enclosed Dimer Formed By The Drosophila
Period Protein
Length = 339
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 116 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 173
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 174 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 205
>pdb|2JFO|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFO|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D- And L-Glutamate
pdb|2JFP|A Chain A, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFP|B Chain B, Crystal Structure Of Enterococcus Faecalis Glutamate
Racemase In Complex With D-Glutamate
Length = 293
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 111 GTLGILKSCLKSGTVKRVVYTSSNAAVFYNDKDVDMMDETFWSDVDYIRK 160
G L +LK LK +R++Y A Y + + + + W D++ K
Sbjct: 35 GGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLK 84
>pdb|3GEC|A Chain A, Crystal Structure Of A Tandem Pas Domain Fragment Of
Drosophila Period
Length = 312
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 71 SHPDGFDAAIAGCTGVLHV--ATPVDFEDKEPEEVITQR----AINGTLGILKSCLKSGT 124
+ PD + ++ T +L V ATP+ K P+E+++Q+ AI T + S + S
Sbjct: 125 ARPDNY--MVSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAA 182
Query: 125 VKRVVYTSSN-----AAVFYNDKDVDMMDETF 151
V + Y + FY+ +D+ +M ET+
Sbjct: 183 VSALGYLPQDLIGRSIMDFYHHEDLSVMKETY 214
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 130 YTSSNAAVFY---NDKDVDMMDETFWSDVDYIRKLDSWGKSY 168
+ SS A V Y N +DV + FW ++ +I+K SW + +
Sbjct: 108 FFSSKAKVIYLMRNPRDVLVSGYFFWKNIKFIKKPKSWEEYF 149
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis.
pdb|3IIE|B Chain B, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis
Length = 401
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 176 ERAALEFAEEHGLDLVTLIPSMVVGPFICPKFAGSVRSSLALILGNREEYGFLLNTSMVH 235
E AA E A LD V + + +VG P ++R+ ++L N+E L+ +
Sbjct: 85 ETAACELA---ALDDVDQVMAAIVGIAGLPSTLAAIRAGKQVLLANKES---LITCGKLF 138
Query: 236 VDDVARAHIFLL 247
+D+V R+ LL
Sbjct: 139 MDEVKRSRAQLL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,915,731
Number of Sequences: 62578
Number of extensions: 369688
Number of successful extensions: 1152
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 75
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)