BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023245
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 97/124 (78%)
Query: 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY 82
R+LH + RVGDL ++I FYT+ LGMKLLR + PE +Y+ AF+GYGPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 142
GVDKY++GT +GH ++V++ A+ + ++ GG VTRE GPVKGG TVIAF+EDPDGYK
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 143 ELLE 146
EL+E
Sbjct: 122 ELIE 125
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 84/126 (66%)
Query: 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 213
L MLRVGDL R+I+FY K GM+LLR +NP+YKY++A +GYGPE + AV+ELTYN G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 214 VTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSV 273
V +Y+ G Y IA+ D+ + E I+ +GG +TRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 274 FVDNLD 279
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 82/124 (66%), Gaps = 5/124 (4%)
Query: 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN 81
RRMLH + RVGDLD++IKFYTE LGMK+LRK D+PED+YT FLGYGPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYK 141
YGV Y +GH I VEDV + V ++ + E + +AF+ DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYE-----DESGFMAFVVDPDGYY 121
Query: 142 FELL 145
ELL
Sbjct: 122 IELL 125
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%)
Query: 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 213
+ M+RVGDLDR+I FY + GM++LRK D P+ KYT+ +GYGPE + VLELTYN+G
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 214 VTEYDKGNGYAQIAIGTDDV 233
VT Y Y IAIG +DV
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV 88
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 37/277 (13%)
Query: 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----------RYTNAFLGYGPE 70
RR LH V++VG+ +T +FY + LGMK+LR + E +++ +G+GPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 DSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTV 130
D HFV ELTYNYGV Y +G F GI + + K + P+
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDF--MGITLASSQAVSNARKLE--------WPLTEVAEG 135
Query: 131 IAFIEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK 189
+ E P GYKF L R P +P+ +V L V DL +++N++ GM++ D +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYEN----DEE 191
Query: 190 YTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITR 249
A++GY D LEL G ++ G + ++ + +K KI
Sbjct: 192 KQRALLGYA--DNQCKLELQGVKGGVDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILT 249
Query: 250 EPGPLPGINT------KITACLDPDGWKSVFVDNLDF 280
PL ++T ++ DPDG + FV + F
Sbjct: 250 ---PLVSLDTPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 30/148 (20%)
Query: 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYG-----PEDSH----- 73
+ + R+ D K++ FYT LG+ LL+K D P +++ FL Y P+D
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 74 -----FVVELTYNYGVD-----KYDIGT----GFGHFGIAVEDVAKTVDLVKAKGGKVTR 119
+ELT+N+G + Y G GFGH GIAV DV + G K +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 120 EP--GPVKGGNTVIAFIEDPDGYKFELL 145
+P G +KG +AFI+DPDGY E+L
Sbjct: 152 KPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 120 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 176
EP P G T + DPD + L L Q MLR+ D ++++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 177 MELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 216
+ LL+K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 217 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 268
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 269 GW 270
G+
Sbjct: 169 GY 170
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV-------- 75
+ + RV D K++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 76 ---------VELTYNYGVD-----KYDIGT----GFGHFGIAVEDVAKTVDLVKAKGGKV 117
+ELT+N+G + Y G GFGH GIAV DV + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 118 TREP--GPVKGGNTVIAFIEDPDGYKFELL 145
++P G +KG +AFI+DPDGY E+L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 81/190 (42%), Gaps = 46/190 (24%)
Query: 120 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 176
EP P GG T ++ D D + L L Q MLRV D ++++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 177 MELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 216
M L++K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 217 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 268
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 269 G-WKSVFVDN 277
G W + N
Sbjct: 168 GYWIEILNPN 177
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV-------- 75
+ + RV D K++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 92
Query: 76 ---------VELTYNYGVD-----KYDIGT----GFGHFGIAVEDVAKTVDLVKAKGGKV 117
+ELT+N+G + Y G GFGH GIAV DV + G K
Sbjct: 93 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 152
Query: 118 TREP--GPVKGGNTVIAFIEDPDGYKFELL 145
++P G +KG +AFI+DPDGY E+L
Sbjct: 153 VKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 46/195 (23%)
Query: 115 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFY 171
G EP P GG T ++ D D + L L Q MLRV D ++++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 172 KKAFGMELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGV 214
+ GM L++K D P K+++ + Y EDKN A LELT+N G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 215 TE-----YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITA 263
+ Y GN G+ I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 264 CLDPDG-WKSVFVDN 277
DPDG W + N
Sbjct: 167 IQDPDGYWIEILNPN 181
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 39/176 (22%)
Query: 3 PTSNTVTEQNVLDWVK----SDKRRMLH-VVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 57
P S +T++ L S K +L + RV D K++ FYT LGM L++K D P
Sbjct: 5 PPSGGLTDEAALSCCSDADPSTKDFLLQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPI 64
Query: 58 DRYTNAFLGYGPEDSHFV-----------------VELTYNYGVD-----KYDIGT---- 91
+++ FL Y ED + + +ELT+N+G + Y G
Sbjct: 65 MKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPR 122
Query: 92 GFGHFGIAVEDVAKTVDLVKAKGGKVTREP--GPVKGGNTVIAFIEDPDGYKFELL 145
GFGH GIAV DV + G K ++P G +KG +AFI+DPDGY ++L
Sbjct: 123 GFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 46/190 (24%)
Query: 120 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 176
EP P GG T ++ D D + L L + MLRV D ++++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 177 MELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 216
M L++K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 217 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 268
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 269 G-WKSVFVDN 277
G W + N
Sbjct: 168 GYWIQILNPN 177
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 4/133 (3%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD 85
H+ V + + FY L +KLL D+P AFL G + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 86 KY--DIGTGFGHFGIAVEDVAKTVDLVKAKGGK-VTREPGP-VKGGNTVIAFIEDPDGYK 141
K+ G G H I V+ + + + VK G + + EP P +G G
Sbjct: 71 KFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVL 130
Query: 142 FELLERGPTPEPL 154
+E E+ E L
Sbjct: 131 YEFCEKKEQAENL 143
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLE-LTYNH 212
L + + V + + FY + ++LL D P IA + G E K +LE L+
Sbjct: 9 LDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIG-ESKIELLEPLSEES 67
Query: 213 GVTEY--DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGW 270
+ ++ +G G IAIG + + + +K +G ++ + P+PG A L P
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDE-PVPGARGAQVAFLHPRSA 126
Query: 271 KSVF 274
+ V
Sbjct: 127 RGVL 130
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 16 WVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP--EDRYTNAFLGYGPEDSH 73
+ +S+ R+ V D K FYT LG L K D+P DR+ P+ +
Sbjct: 19 YFQSNAXRIHLTNVFVDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQ 76
Query: 74 FVVELTYNYGVDKYD---IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTV 130
++E + + V + + G AV+D+A + + A G + T+E P G V
Sbjct: 77 LLLEPSSHAAVTPFKEALVADGIPAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVV 134
Query: 131 IAFIEDPDGYKFELLE 146
A ++D G +L +
Sbjct: 135 TAILDDTCGNLIQLXQ 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Query: 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN 81
+ + HV + T FY E LG ++LR+ PE L G ++ + +
Sbjct: 4 KEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP 63
Query: 82 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN-TVIAFIEDPDGY 140
Y G H VE + + + + +G + EP V F DPDG
Sbjct: 64 -ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGL 120
Query: 141 KFELLE 146
EL E
Sbjct: 121 PLELHE 126
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY 82
R+ HV V DL+K FY LG ++ +PE + F+ G +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 83 GVDKYDIG-------TGFGHFGIAVEDV-AKTVDLVKAKGGKVTRE 120
G+D G G H I V+++ A +DL K K ++ E
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEE 106
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 213
L V + V DL++A FYK G ++ P++ ++ + G N +EL + G
Sbjct: 6 LNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLG----NTKMELLHPLG 61
Query: 214 V-------TEYDKGNGYAQIAIGTDDV 233
+ + +K G I I D++
Sbjct: 62 LDSPIAGFLQKNKAGGMHHICIEVDNI 88
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-EDSHFVVELT-YNYG 83
HV V D DK+ +FY LG +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 84 VDKYDI-----GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD 138
I G H VEDV + + A G +V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 139 GYKFELLE 146
G EL E
Sbjct: 127 GLPLELHE 134
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNP---DYK 189
V L V D D++ FY G E++R+ P DYK
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYK 44
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVEL------- 78
HV Y D D+ K+Y E G L + + PE + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 79 ---TYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVT-REPGPVKGGNTV 130
T + K++ G H V+D+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 67 YGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDL------VKAKGGKVTRE 120
+ PE+ + E G D TGFG G ++EDVA V + VKA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-- 83
H+ V DL K++ F+ E LG+ L + + T A+L G V L+Y+
Sbjct: 7 HLTLAVSDLQKSVTFWHELLGLTLHARWN------TGAYLTCGD----LWVCLSYDEARQ 56
Query: 84 -VDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 142
V + F +A ED ++ G + ++ K F+ DPDG+K
Sbjct: 57 YVPPQESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQN---KSEGASFYFL-DPDGHKL 112
Query: 143 EL 144
EL
Sbjct: 113 EL 114
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 161 VGDLDRAINFYKKAFGME-LLRKRDNPDYKYTIAVMGYGPEDKNAV-LELTYNHGVTEYD 218
V D ++A++FY G E + + +P+ ++ + V+ G + + A+ L Y G
Sbjct: 21 VSDQEKALDFYVNTLGFEKVFDNQLDPNXRF-VTVVPPGAQTQVALGLPSWYEDG----R 75
Query: 219 KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDG 269
K GY I++ T D+ + + + G T+ P P + T DPDG
Sbjct: 76 KPGGYTGISLITRDIDEAYKTLTERGVTFTKPPEXXP-WGQRATWFSDPDG 125
>pdb|1I9W|A Chain A, Crystal Structure Of The Fusion Glycoprotein E1 From
Semliki Forest Virus
Length = 390
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 23/215 (10%)
Query: 66 GYGPEDSHFVVELTYNYGVDKYDIGTGF-GHFGIAVEDVAKTVDLVKAKGGKVTREPGPV 124
+ P D+ VV + D G+G G FG ++ DL K+ R P P
Sbjct: 169 AWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLAR-PSP- 226
Query: 125 KGGNTVIAFIEDPDGYKFELLERGP---TPEPL-CQVM--------LRVGDLDRAINFYK 172
G + + + P G+K+ L E+G T P CQ+ VG++ ++N
Sbjct: 227 --GMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPD 284
Query: 173 KAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY---NHGVTEYDKGNGYAQIAIG 229
AF ++ D T+A + D VL LTY +G + A +
Sbjct: 285 SAF-TRIVEAPTIIDLTCTVATCTHS-SDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEA 342
Query: 230 TDDVYKTAEAIKLSGGKITREPGPLPGINTKITAC 264
T V KTA + L + P + + + C
Sbjct: 343 TAKV-KTAGKVTLHFSTASASPSFVVSLCSARATC 376
>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
Length = 364
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYN 211
+PLCQV + D + F +A ++ + RD A + +G A + + N
Sbjct: 12 QPLCQVSEELDDQPKGALFTLQAAASKIQKMRDAALRASIYAEINHGTNRAKAAV-IVAN 70
Query: 212 HGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSG 244
H + D G + + + +V TA A L G
Sbjct: 71 HYAMKADSGLEALKQTLSSQEVTATATASYLKG 103
>pdb|1RER|A Chain A, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|B Chain B, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|C Chain C, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|2ALA|A Chain A, Crystal Structure Of The Semliki Forest Virus Envelope
Protein E1 In Its Monomeric Conformation
Length = 391
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 23/215 (10%)
Query: 66 GYGPEDSHFVVELTYNYGVDKYDIGTGF-GHFGIAVEDVAKTVDLVKAKGGKVTREPGPV 124
+ P D+ VV + D G+G G FG ++ DL K+ R P P
Sbjct: 169 AWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLAR-PSP- 226
Query: 125 KGGNTVIAFIEDPDGYKFELLERGP---TPEPL-CQVM--------LRVGDLDRAINFYK 172
G + + + P G+K+ L E+G T P CQ+ VG++ ++N
Sbjct: 227 --GMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPD 284
Query: 173 KAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY---NHGVTEYDKGNGYAQIAIG 229
AF ++ D T+A + D VL LTY +G + A +
Sbjct: 285 SAF-TRIVEAPTIIDLTCTVATCTHS-SDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEA 342
Query: 230 TDDVYKTAEAIKLSGGKITREPGPLPGINTKITAC 264
T V KTA + L + P + + + C
Sbjct: 343 TAKV-KTAGKVTLHFSTASASPSFVVSLCSARATC 376
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRK-RDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV 84
H+ + V +L+K+I+FY + L KLL K R + ++ E+ +
Sbjct: 8 HICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEED-----------I 56
Query: 85 DKYDIGTGFGHFGIAVEDVAKTVDLVKAK--GGKVTREPGPVKG-GNTVIAFIEDPDGYK 141
+ +I + H V + A +D +K V PG + + + DPDG+K
Sbjct: 57 PRNEIKQSYTHXAFTVTNEA--LDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHK 114
Query: 142 FEL 144
FE
Sbjct: 115 FEF 117
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 23 RMLHVVYRVGDLDKTIKFYTECLGMK 48
R+ H+V V D+ TI+FY E LG
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 23 RMLHVVYRVGDLDKTIKFYTECLGMK 48
R+ H+V V D+ TI+FY E LG
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 167 AINFYKKAFGMELLRKRDNPDYKYT-------IAVMGYGPEDKNAVLELTYNHGVTEYDK 219
AINF G++L++KR + +AV+ PE + ++E + +G+ E
Sbjct: 103 AINFED---GVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGAN 159
Query: 220 GNGYAQIAIGTDDVY--KTAEAIKLSGGKITREPGPLP 255
N QI I + V K E IK GG+ + P P
Sbjct: 160 YNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAP 197
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE 57
HV Y D D+ K+Y E G L + + PE
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPE 43
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 99 AVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 132
AVEDV K DL+KA G+ +P VK GN V A
Sbjct: 12 AVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRA 46
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAF 64
RR+ H+V V + T FY++ LGM+++ + EDR F
Sbjct: 26 RRLDHIVMTVKSIKDTTMFYSKILGMEVMTFK---EDRKALCF 65
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 98 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 132
+AVEDV K DL+K+ G+ +P VK GN V A
Sbjct: 11 VAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRA 46
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter
pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter, In A Closed Conformation With
Benzylhydantoin
Length = 501
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 204 AVLELTYNHGVTEYDKGNGYAQ---IAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTK 260
A+ +T +G+T N +A +A+G VY + +S G++ G PG+
Sbjct: 151 AIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFS 210
Query: 261 ITACLDPDGWKSVFVDNLDFLKE 283
+ GW +V V D +KE
Sbjct: 211 TAIMIFVGGWIAVVVSIHDIVKE 233
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 140 YKFELLERGPTPEPLCQVMLRVGDLD-RAINFYKKAFGMELLRKRDNPDYKYTIAVMGYG 198
++ E+LE P E + L V +D R ++ ++ F L++ R + +K AV+
Sbjct: 588 HRNEMLEIAPLIESVYASELSVMKVDMRHLSLMQRRFPDVLIQARPSHFWK---AVLNDS 644
Query: 199 PEDKNAVLELTYNH 212
PE AV+ L+++H
Sbjct: 645 PEAVKAVMNLSHSH 658
>pdb|3R4Q|A Chain A, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|B Chain B, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|C Chain C, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|D Chain D, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|E Chain E, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
Length = 160
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 182
P + + L DLD A FY+ FG+E++ K
Sbjct: 6 PSAIMETALYADDLDAAEAFYRDVFGLEMVLK 37
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha-
Catenin
Length = 205
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 98 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 132
+AVEDV K DL K+ G+ +P VK GN V A
Sbjct: 36 VAVEDVRKQGDLXKSAAGEFADDPCSSVKRGNXVRA 71
>pdb|3EHN|A Chain A, Bt1043 With N-Acetyllactosamine
pdb|3EHN|B Chain B, Bt1043 With N-Acetyllactosamine
Length = 532
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 NVLDWVKSDKRRMLHVVYRVGDLDKTI 38
NV +WVK ML +V RV +D+T+
Sbjct: 196 NVQNWVKLANSLMLRIVVRVHFIDETL 222
>pdb|3RRI|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
ProteinDIOXYGENASE FROM ALICYCLOBACILLUS ACIDOCALDARIUS
pdb|3RRI|B Chain B, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
ProteinDIOXYGENASE FROM ALICYCLOBACILLUS ACIDOCALDARIUS
Length = 135
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG 83
+ H+ DLD+ FY LG KL R+ DR T F G V L+
Sbjct: 10 VFHLAIPARDLDEAYDFYVTKLGCKLARRY---PDRITLDFFG-----DQLVCHLS---- 57
Query: 84 VDKYD--IGTGFGHFGIAVEDVAKTVDLVK 111
D++D + HFGI D +L K
Sbjct: 58 -DRWDREVSXYPRHFGITFRDKKHFDNLYK 86
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 148 GPTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAV-- 205
G TPE R+ RA+ + ++ G EL R T A++ P+ K A
Sbjct: 123 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 173
Query: 206 LELTYN---HGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKIT 262
LE T + Y G ++ +G DD A+ K GK+ G GI I
Sbjct: 174 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 230
Query: 263 ACLDPDGWKSVFVD 276
DG V +D
Sbjct: 231 EVFARDGAHVVAID 244
>pdb|1KMY|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With 2,3-Dihydroxybiphenyl Under Anaerobic
Condition
pdb|1KND|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With Catechol Under Anaerobic Condition
pdb|1KNF|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Complexed With 3-Methyl Catechol Under Anaerobic
Condition
pdb|1LGT|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
(Dhbd) Complexed With 2'-Cl Dihydroxybiphenyl (Dhb)
pdb|1LKD|A Chain A, Crystal Structure Of 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
(Dhbd) Complexed With 2',6'-Dicl Dihydroxybiphenyl (Dhb)
pdb|1HAN|A Chain A, Crystal Structure Of The Biphenyl-Cleaving Extradiol
Dioxygenase From A Pcb-Degrading Pseudomonad
Length = 297
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 26 HVVYRVGDLDKTIKFYTECLGMKL 49
H V V D DK + FYT+ LG +L
Sbjct: 145 HFVRCVPDSDKALAFYTDVLGFQL 168
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 148 GPTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAV-- 205
G TPE R+ RA+ + ++ G EL R T A++ P+ K A
Sbjct: 131 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 181
Query: 206 LELTYN---HGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKIT 262
LE T + Y G ++ +G DD A+ K GK+ G GI I
Sbjct: 182 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 238
Query: 263 ACLDPDGWKSVFVD 276
DG V +D
Sbjct: 239 EVFARDGAHVVAID 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,083,180
Number of Sequences: 62578
Number of extensions: 476011
Number of successful extensions: 1295
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 82
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)