Query 023245
Match_columns 285
No_of_seqs 172 out of 2509
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 3.4E-44 7.3E-49 299.2 34.9 275 11-285 12-286 (286)
2 TIGR02295 HpaD 3,4-dihydroxyph 100.0 4E-32 8.6E-37 228.3 30.0 234 20-278 1-257 (294)
3 TIGR03211 catechol_2_3 catecho 100.0 3E-32 6.5E-37 229.8 28.8 233 21-275 2-263 (303)
4 TIGR03213 23dbph12diox 2,3-dih 100.0 8.5E-31 1.9E-35 219.1 28.5 233 21-276 1-262 (286)
5 KOG2943 Predicted glyoxalase [ 100.0 1.3E-31 2.9E-36 203.8 20.0 259 12-285 6-278 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 2.9E-23 6.2E-28 178.0 26.2 223 22-251 1-267 (353)
7 PLN02875 4-hydroxyphenylpyruva 99.9 1.2E-20 2.5E-25 160.4 23.0 222 24-251 1-295 (398)
8 COG2514 Predicted ring-cleavag 99.9 1.8E-20 4E-25 147.4 21.7 198 16-233 3-243 (265)
9 PLN02367 lactoylglutathione ly 99.9 7.2E-21 1.6E-25 149.6 15.7 128 152-281 74-226 (233)
10 TIGR00068 glyox_I lactoylgluta 99.9 3.7E-20 8E-25 140.0 15.9 135 149-283 13-147 (150)
11 TIGR00068 glyox_I lactoylgluta 99.9 1.2E-19 2.5E-24 137.3 18.0 133 19-151 13-145 (150)
12 PRK10291 glyoxalase I; Provisi 99.8 5.5E-20 1.2E-24 135.5 14.6 122 158-279 1-122 (129)
13 PLN03042 Lactoylglutathione ly 99.8 7.2E-20 1.6E-24 141.3 15.2 130 151-282 25-179 (185)
14 PRK10291 glyoxalase I; Provisi 99.8 2E-19 4.3E-24 132.5 16.7 126 28-153 1-126 (129)
15 PLN02367 lactoylglutathione ly 99.8 3.8E-19 8.3E-24 139.9 17.9 127 21-149 73-224 (233)
16 cd08342 HPPD_N_like N-terminal 99.8 2.3E-19 4.9E-24 133.4 14.5 123 154-283 1-129 (136)
17 KOG0638 4-hydroxyphenylpyruvat 99.8 2.1E-20 4.6E-25 148.6 9.4 227 20-252 14-292 (381)
18 PLN03042 Lactoylglutathione ly 99.8 2.2E-18 4.8E-23 133.0 17.9 128 20-149 24-176 (185)
19 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 7.9E-19 1.7E-23 131.5 14.6 122 152-277 2-141 (142)
20 cd07233 Glyoxalase_I Glyoxalas 99.8 1.4E-18 3.1E-23 126.4 15.0 120 154-275 1-121 (121)
21 cd07233 Glyoxalase_I Glyoxalas 99.8 3.7E-18 8E-23 124.2 16.4 120 24-145 1-121 (121)
22 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.3E-18 7.1E-23 128.2 16.4 123 21-147 1-141 (142)
23 PLN02300 lactoylglutathione ly 99.8 1.8E-18 4E-23 144.4 16.2 131 149-279 20-150 (286)
24 cd08358 Glo_EDI_BRP_like_21 Th 99.8 3E-18 6.6E-23 124.1 14.9 114 153-276 2-126 (127)
25 cd08342 HPPD_N_like N-terminal 99.8 4.9E-18 1.1E-22 126.2 16.0 123 24-153 1-129 (136)
26 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.3E-17 2.8E-22 120.8 16.5 114 23-146 2-126 (127)
27 PRK11478 putative lyase; Provi 99.8 7E-18 1.5E-22 124.2 15.5 123 20-147 3-129 (129)
28 cd07257 THT_oxygenase_C The C- 99.8 2.2E-18 4.8E-23 130.5 12.8 120 153-279 1-127 (153)
29 PRK11478 putative lyase; Provi 99.8 7.1E-18 1.5E-22 124.2 14.9 120 152-276 5-128 (129)
30 PRK04101 fosfomycin resistance 99.8 1.6E-17 3.5E-22 123.9 15.7 118 20-148 1-120 (139)
31 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.3E-17 2.7E-22 122.0 14.8 118 23-144 1-124 (125)
32 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.1E-17 2.4E-22 122.3 13.8 119 153-275 1-125 (125)
33 cd07243 2_3_CTD_C C-terminal d 99.8 1.9E-17 4.1E-22 123.9 15.1 118 151-277 4-125 (143)
34 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.3E-17 5E-22 120.5 15.2 121 152-276 2-125 (125)
35 TIGR03645 glyox_marine lactoyl 99.8 3E-17 6.5E-22 125.4 16.3 126 22-150 3-154 (162)
36 TIGR03645 glyox_marine lactoyl 99.8 2.1E-17 4.5E-22 126.3 14.8 126 151-279 2-153 (162)
37 cd08360 MhqB_like_C C-terminal 99.8 3.4E-17 7.4E-22 121.4 14.8 119 151-279 1-122 (134)
38 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 4.3E-17 9.2E-22 119.1 15.1 120 22-146 2-125 (125)
39 TIGR03081 metmalonyl_epim meth 99.8 2.1E-17 4.5E-22 121.5 13.2 119 153-276 1-128 (128)
40 cd07247 SgaA_N_like N-terminal 99.8 4E-17 8.7E-22 117.5 14.4 114 154-276 1-114 (114)
41 cd08360 MhqB_like_C C-terminal 99.7 1.1E-16 2.3E-21 118.7 15.9 117 22-148 2-121 (134)
42 cd07257 THT_oxygenase_C The C- 99.7 3.8E-17 8.2E-22 123.8 13.4 118 23-147 1-125 (153)
43 cd07243 2_3_CTD_C C-terminal d 99.7 1.6E-16 3.5E-21 118.8 16.5 119 20-147 3-125 (143)
44 cd07265 2_3_CTD_N N-terminal d 99.7 1.2E-16 2.5E-21 116.5 14.8 116 21-148 2-120 (122)
45 cd07265 2_3_CTD_N N-terminal d 99.7 8.9E-17 1.9E-21 117.2 14.0 117 151-279 2-121 (122)
46 TIGR03081 metmalonyl_epim meth 99.7 5.8E-17 1.3E-21 119.1 12.9 119 23-146 1-128 (128)
47 cd07256 HPCD_C_class_II C-term 99.7 1.4E-16 2.9E-21 121.8 14.9 120 151-279 1-125 (161)
48 cd09014 BphC-JF8_C_like C-term 99.7 2.4E-16 5.3E-21 120.9 16.1 124 19-148 2-128 (166)
49 PRK04101 fosfomycin resistance 99.7 1.5E-16 3.3E-21 118.6 14.4 116 152-278 3-120 (139)
50 cd07247 SgaA_N_like N-terminal 99.7 2.3E-16 5.1E-21 113.5 14.8 114 24-146 1-114 (114)
51 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.5E-16 3.3E-21 115.0 13.9 117 156-276 1-119 (119)
52 cd07237 BphC1-RGP6_C_like C-te 99.7 1.9E-16 4.1E-21 120.1 14.7 122 150-279 6-133 (154)
53 PF00903 Glyoxalase: Glyoxalas 99.7 4.8E-17 1E-21 119.3 10.8 120 23-144 1-128 (128)
54 cd07237 BphC1-RGP6_C_like C-te 99.7 2.7E-16 5.8E-21 119.3 15.1 122 19-148 5-132 (154)
55 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.7E-16 3.8E-21 115.3 13.4 113 153-277 2-119 (120)
56 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.8E-16 3.8E-21 115.2 13.4 114 22-147 1-119 (120)
57 cd07258 PpCmtC_C C-terminal do 99.7 2.4E-16 5.2E-21 117.4 13.8 113 155-279 1-116 (141)
58 cd08343 ED_TypeI_classII_C C-t 99.7 5.9E-16 1.3E-20 114.3 15.8 116 25-149 1-119 (131)
59 cd08347 PcpA_C_like C-terminal 99.7 3.9E-16 8.4E-21 118.5 15.1 117 23-148 1-121 (157)
60 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 3.8E-16 8.3E-21 114.0 14.5 117 152-276 2-124 (125)
61 cd08363 FosB FosB, a fosfomyci 99.7 2.1E-16 4.5E-21 116.6 13.1 114 24-148 1-116 (131)
62 cd08364 FosX FosX, a fosfomyci 99.7 5.2E-16 1.1E-20 114.5 15.2 119 20-147 1-122 (131)
63 cd07266 HPCD_N_class_II N-term 99.7 2.6E-16 5.6E-21 114.5 13.4 115 20-147 1-118 (121)
64 cd07264 Glo_EDI_BRP_like_15 Th 99.7 4.4E-16 9.6E-21 113.9 14.4 115 154-277 1-125 (125)
65 cd08355 Glo_EDI_BRP_like_14 Th 99.7 8.5E-16 1.9E-20 111.9 15.8 115 157-276 3-121 (122)
66 cd08363 FosB FosB, a fosfomyci 99.7 2.6E-16 5.6E-21 116.1 12.9 115 154-279 1-117 (131)
67 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 6.9E-16 1.5E-20 112.7 14.9 118 21-146 1-124 (125)
68 PF00903 Glyoxalase: Glyoxalas 99.7 4.1E-17 9E-22 119.6 8.3 120 153-274 1-128 (128)
69 cd08351 ChaP_like ChaP, an enz 99.7 8.1E-16 1.8E-20 112.2 15.0 112 20-147 1-121 (123)
70 cd09013 BphC-JF8_N_like N-term 99.7 7.5E-16 1.6E-20 112.1 14.5 114 19-147 2-118 (121)
71 cd08347 PcpA_C_like C-terminal 99.7 5.8E-16 1.3E-20 117.5 14.3 118 153-279 1-122 (157)
72 cd07256 HPCD_C_class_II C-term 99.7 1.2E-15 2.7E-20 116.5 16.2 118 22-148 2-124 (161)
73 cd07255 Glo_EDI_BRP_like_12 Th 99.7 1.4E-15 3.1E-20 111.2 15.9 117 22-149 1-121 (125)
74 cd08343 ED_TypeI_classII_C C-t 99.7 8.8E-16 1.9E-20 113.3 14.7 116 155-279 1-119 (131)
75 cd07264 Glo_EDI_BRP_like_15 Th 99.7 6.4E-16 1.4E-20 113.0 13.8 117 24-147 1-125 (125)
76 cd07249 MMCE Methylmalonyl-CoA 99.7 6.3E-16 1.4E-20 113.5 13.7 118 154-276 1-128 (128)
77 cd07263 Glo_EDI_BRP_like_16 Th 99.7 7.2E-16 1.6E-20 111.5 13.8 117 26-146 1-119 (119)
78 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 4.1E-16 9E-21 111.7 12.4 113 154-274 1-114 (114)
79 cd07239 BphC5-RK37_C_like C-te 99.7 8.5E-16 1.8E-20 115.1 14.3 114 152-279 3-119 (144)
80 PRK06724 hypothetical protein; 99.7 1.3E-15 2.9E-20 111.4 14.9 115 19-149 3-125 (128)
81 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.8E-15 6.1E-20 109.2 16.4 117 27-146 3-121 (122)
82 cd08361 PpCmtC_N N-terminal do 99.7 6.3E-16 1.4E-20 112.9 12.9 113 20-148 3-120 (124)
83 cd08346 PcpA_N_like N-terminal 99.7 1.1E-15 2.4E-20 111.8 14.3 120 23-145 1-126 (126)
84 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 2.6E-15 5.7E-20 110.3 16.0 116 23-146 1-127 (128)
85 cd08364 FosX FosX, a fosfomyci 99.7 1.3E-15 2.8E-20 112.3 14.3 117 152-278 3-123 (131)
86 cd07267 THT_Oxygenase_N N-term 99.7 2E-15 4.3E-20 108.5 14.8 111 21-148 1-111 (113)
87 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 2.6E-15 5.7E-20 109.2 15.5 116 157-277 5-122 (122)
88 cd08346 PcpA_N_like N-terminal 99.7 9.5E-16 2.1E-20 112.1 13.2 120 153-275 1-126 (126)
89 cd09014 BphC-JF8_C_like C-term 99.7 1.9E-15 4.1E-20 116.0 15.3 121 151-277 4-127 (166)
90 cd08351 ChaP_like ChaP, an enz 99.7 1.3E-15 2.8E-20 111.2 13.6 112 152-278 3-122 (123)
91 cd08359 Glo_EDI_BRP_like_22 Th 99.7 1.9E-15 4E-20 109.6 14.4 112 156-276 4-119 (119)
92 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 3.6E-15 7.9E-20 108.5 15.9 115 27-146 5-121 (122)
93 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 2E-15 4.2E-20 111.0 14.6 116 153-276 1-127 (128)
94 cd07240 ED_TypeI_classII_N N-t 99.7 2.1E-15 4.5E-20 108.9 14.4 111 22-147 1-114 (117)
95 cd08359 Glo_EDI_BRP_like_22 Th 99.7 1.8E-15 4E-20 109.6 14.2 111 26-146 4-119 (119)
96 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 7E-16 1.5E-20 110.5 11.8 113 24-144 1-114 (114)
97 cd09013 BphC-JF8_N_like N-term 99.7 1.2E-15 2.7E-20 110.9 13.1 113 151-278 4-119 (121)
98 cd07249 MMCE Methylmalonyl-CoA 99.7 1.4E-15 3E-20 111.6 13.4 118 24-146 1-128 (128)
99 PRK06724 hypothetical protein; 99.7 1.6E-15 3.5E-20 111.0 13.4 112 151-278 5-124 (128)
100 cd07266 HPCD_N_class_II N-term 99.7 1.5E-15 3.2E-20 110.5 13.1 114 151-277 2-118 (121)
101 cd07239 BphC5-RK37_C_like C-te 99.7 2.4E-15 5.2E-20 112.6 14.3 113 22-148 3-118 (144)
102 COG3185 4-hydroxyphenylpyruvat 99.7 1.2E-14 2.5E-19 118.5 19.1 224 20-252 19-275 (363)
103 cd07252 BphC1-RGP6_N_like N-te 99.7 2.3E-15 5E-20 109.3 13.6 113 22-148 1-118 (120)
104 cd07258 PpCmtC_C C-terminal do 99.7 3.1E-15 6.8E-20 111.4 14.3 112 25-148 1-115 (141)
105 cd08348 BphC2-C3-RGP6_C_like T 99.7 4.8E-15 1E-19 109.8 14.9 119 153-279 1-122 (134)
106 cd08349 BLMA_like Bleomycin bi 99.7 3.6E-15 7.7E-20 106.8 13.8 110 157-276 2-112 (112)
107 cd08348 BphC2-C3-RGP6_C_like T 99.7 1E-14 2.2E-19 108.1 16.6 120 23-150 1-123 (134)
108 cd07255 Glo_EDI_BRP_like_12 Th 99.7 4.2E-15 9.1E-20 108.7 14.2 117 152-279 1-121 (125)
109 cd08362 BphC5-RrK37_N_like N-t 99.7 5.5E-15 1.2E-19 107.3 14.7 113 21-148 1-118 (120)
110 cd08361 PpCmtC_N N-terminal do 99.7 2.2E-15 4.8E-20 110.0 12.4 112 152-279 5-121 (124)
111 cd07252 BphC1-RGP6_N_like N-te 99.7 3.4E-15 7.3E-20 108.5 13.3 112 153-278 2-118 (120)
112 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 5.6E-15 1.2E-19 105.9 13.9 109 156-277 3-111 (112)
113 PF12681 Glyoxalase_2: Glyoxal 99.7 1.5E-15 3.2E-20 108.1 10.8 108 159-275 1-108 (108)
114 cd08350 BLMT_like BLMT, a bleo 99.7 4.5E-15 9.8E-20 107.8 13.2 108 156-277 5-119 (120)
115 cd07262 Glo_EDI_BRP_like_19 Th 99.6 6.6E-15 1.4E-19 107.4 14.0 114 24-145 1-122 (123)
116 PF12681 Glyoxalase_2: Glyoxal 99.6 2.9E-15 6.2E-20 106.6 11.8 108 29-145 1-108 (108)
117 cd07240 ED_TypeI_classII_N N-t 99.6 6.6E-15 1.4E-19 106.3 13.4 112 152-278 1-115 (117)
118 cd08345 Fosfomycin_RP Fosfomyc 99.6 6E-15 1.3E-19 105.9 12.8 109 156-277 1-111 (113)
119 cd08345 Fosfomycin_RP Fosfomyc 99.6 6.5E-15 1.4E-19 105.7 12.8 109 26-147 1-111 (113)
120 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 2E-14 4.4E-19 103.0 14.5 108 27-147 4-111 (112)
121 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.7E-14 3.6E-19 105.2 13.8 114 154-275 1-122 (123)
122 cd07244 FosA FosA, a Fosfomyci 99.6 1.4E-14 3E-19 105.4 13.0 109 23-148 1-111 (121)
123 cd07235 MRD Mitomycin C resist 99.6 1.7E-14 3.8E-19 105.0 13.6 113 154-275 1-121 (122)
124 cd08354 Glo_EDI_BRP_like_13 Th 99.6 2.3E-14 5.1E-19 104.2 14.1 113 24-146 1-121 (122)
125 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.6E-14 3.5E-19 105.1 13.1 114 154-277 1-122 (122)
126 cd07261 Glo_EDI_BRP_like_11 Th 99.6 1.9E-14 4E-19 103.5 13.1 108 157-275 2-113 (114)
127 cd07235 MRD Mitomycin C resist 99.6 1.9E-14 4.1E-19 104.8 13.2 113 24-145 1-121 (122)
128 cd07267 THT_Oxygenase_N N-term 99.6 2.4E-14 5.3E-19 102.8 13.5 109 152-277 2-110 (113)
129 cd07244 FosA FosA, a Fosfomyci 99.6 1.8E-14 3.8E-19 104.8 12.9 108 153-277 1-110 (121)
130 COG3324 Predicted enzyme relat 99.6 3.2E-14 6.9E-19 101.2 13.7 120 151-278 7-126 (127)
131 TIGR03211 catechol_2_3 catecho 99.6 3.2E-14 7E-19 120.1 16.4 120 19-146 141-264 (303)
132 cd09012 Glo_EDI_BRP_like_24 Th 99.6 1.7E-14 3.6E-19 105.4 12.5 112 155-276 2-123 (124)
133 cd06587 Glo_EDI_BRP_like This 99.6 1.8E-14 3.8E-19 102.5 12.4 112 156-274 1-112 (112)
134 cd08362 BphC5-RrK37_N_like N-t 99.6 2.6E-14 5.6E-19 103.7 13.1 114 152-279 2-119 (120)
135 cd08357 Glo_EDI_BRP_like_18 Th 99.6 2.6E-14 5.7E-19 104.4 12.7 113 26-146 2-124 (125)
136 cd06587 Glo_EDI_BRP_like This 99.6 4.8E-14 1E-18 100.2 13.7 112 26-144 1-112 (112)
137 cd07254 Glo_EDI_BRP_like_20 Th 99.6 4.6E-14 1E-18 102.4 13.8 111 155-277 3-117 (120)
138 cd08344 MhqB_like_N N-terminal 99.6 5E-14 1.1E-18 101.0 13.7 108 22-148 1-110 (112)
139 cd08350 BLMT_like BLMT, a bleo 99.6 4.7E-14 1E-18 102.4 13.5 107 27-147 6-119 (120)
140 cd08357 Glo_EDI_BRP_like_18 Th 99.6 2.4E-14 5.2E-19 104.6 11.9 113 156-276 2-124 (125)
141 cd08349 BLMA_like Bleomycin bi 99.6 6.8E-14 1.5E-18 100.1 14.0 109 28-146 3-112 (112)
142 TIGR02295 HpaD 3,4-dihydroxyph 99.6 6.4E-14 1.4E-18 117.8 15.8 120 20-148 133-257 (294)
143 cd08344 MhqB_like_N N-terminal 99.6 5.5E-14 1.2E-18 100.7 13.0 110 152-278 1-110 (112)
144 cd07254 Glo_EDI_BRP_like_20 Th 99.6 8.9E-14 1.9E-18 100.9 13.9 112 25-148 3-118 (120)
145 COG3324 Predicted enzyme relat 99.6 1.6E-13 3.6E-18 97.6 14.5 121 20-148 6-126 (127)
146 cd09012 Glo_EDI_BRP_like_24 Th 99.6 5.3E-14 1.1E-18 102.8 12.5 112 25-146 2-123 (124)
147 cd07261 Glo_EDI_BRP_like_11 Th 99.6 1.2E-13 2.5E-18 99.3 13.5 108 27-145 2-113 (114)
148 TIGR03213 23dbph12diox 2,3-dih 99.6 1E-13 2.2E-18 116.1 14.8 118 20-146 139-262 (286)
149 cd08356 Glo_EDI_BRP_like_17 Th 99.6 1.1E-13 2.3E-18 99.4 12.3 104 157-276 5-113 (113)
150 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2E-13 4.4E-18 99.0 12.8 110 157-276 2-120 (121)
151 PF13669 Glyoxalase_4: Glyoxal 99.5 1E-13 2.3E-18 98.7 11.0 95 25-121 1-97 (109)
152 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.5E-13 3.3E-18 98.6 11.7 104 27-146 5-113 (113)
153 PF13669 Glyoxalase_4: Glyoxal 99.5 7.6E-14 1.6E-18 99.5 9.3 95 155-251 1-97 (109)
154 KOG2944 Glyoxalase [Carbohydra 99.5 3E-13 6.6E-18 97.5 11.3 133 131-278 27-169 (170)
155 KOG2943 Predicted glyoxalase [ 99.5 1.7E-13 3.7E-18 105.3 9.8 121 150-279 14-145 (299)
156 cd07251 Glo_EDI_BRP_like_10 Th 99.5 5.6E-13 1.2E-17 96.7 11.6 110 27-146 2-120 (121)
157 KOG2944 Glyoxalase [Carbohydra 99.4 3.6E-12 7.7E-17 92.0 11.6 54 91-147 114-168 (170)
158 cd07250 HPPD_C_like C-terminal 99.4 6.3E-12 1.4E-16 98.4 10.9 98 152-251 2-112 (191)
159 COG2514 Predicted ring-cleavag 99.3 2E-11 4.4E-16 96.7 12.6 119 149-279 6-128 (265)
160 COG3565 Predicted dioxygenase 99.3 2.2E-11 4.7E-16 82.9 10.9 115 153-275 4-127 (138)
161 cd07250 HPPD_C_like C-terminal 99.3 1.5E-11 3.3E-16 96.3 11.4 102 21-124 1-115 (191)
162 COG3565 Predicted dioxygenase 99.3 1.3E-10 2.8E-15 79.1 10.5 118 22-147 3-129 (138)
163 cd06588 PhnB_like Escherichia 99.2 1.1E-09 2.3E-14 80.4 14.7 110 28-144 4-127 (128)
164 COG2764 PhnB Uncharacterized p 99.2 2.6E-09 5.7E-14 77.5 15.4 117 28-149 5-133 (136)
165 cd06588 PhnB_like Escherichia 99.2 1.2E-09 2.6E-14 80.0 13.9 112 157-275 3-128 (128)
166 COG3607 Predicted lactoylgluta 99.1 8.5E-10 1.8E-14 76.6 10.5 118 153-279 3-129 (133)
167 TIGR01263 4HPPD 4-hydroxypheny 99.1 3.4E-10 7.4E-15 97.4 10.7 103 18-122 153-268 (353)
168 PF13468 Glyoxalase_3: Glyoxal 99.1 1.3E-09 2.9E-14 84.4 12.7 147 24-175 1-175 (175)
169 COG3607 Predicted lactoylgluta 99.1 6.8E-10 1.5E-14 77.1 9.4 116 22-147 2-127 (133)
170 COG2764 PhnB Uncharacterized p 99.1 1.2E-08 2.5E-13 74.2 14.6 118 157-279 4-133 (136)
171 COG0346 GloA Lactoylglutathion 99.0 1.1E-09 2.3E-14 80.2 8.4 122 22-146 1-138 (138)
172 COG0346 GloA Lactoylglutathion 99.0 3.2E-09 7E-14 77.7 8.5 121 153-276 2-138 (138)
173 KOG0638 4-hydroxyphenylpyruvat 98.8 8.8E-09 1.9E-13 83.0 6.9 132 152-283 16-154 (381)
174 PLN02875 4-hydroxyphenylpyruva 98.8 2.6E-08 5.6E-13 85.5 10.2 100 20-121 177-295 (398)
175 PRK01037 trmD tRNA (guanine-N( 98.8 3.2E-08 7E-13 82.1 10.1 106 22-147 246-354 (357)
176 PRK01037 trmD tRNA (guanine-N( 98.8 8.6E-08 1.9E-12 79.6 10.4 105 152-276 246-353 (357)
177 PF14506 CppA_N: CppA N-termin 98.7 6.8E-07 1.5E-11 62.1 12.3 113 25-147 2-114 (125)
178 PRK10148 hypothetical protein; 98.6 9.4E-06 2E-10 60.7 16.3 114 28-149 6-143 (147)
179 PF14506 CppA_N: CppA N-termin 98.5 9.5E-06 2.1E-10 56.5 12.0 115 155-281 2-118 (125)
180 PRK10148 hypothetical protein; 98.4 1.5E-05 3.2E-10 59.7 13.8 113 157-277 5-141 (147)
181 COG3185 4-hydroxyphenylpyruvat 98.4 7.7E-07 1.7E-11 73.4 7.1 104 20-123 164-276 (363)
182 PF14696 Glyoxalase_5: Hydroxy 98.4 5.3E-06 1.2E-10 60.7 10.0 121 19-150 5-129 (139)
183 PF13468 Glyoxalase_3: Glyoxal 98.1 1.4E-05 2.9E-10 61.9 7.1 89 154-246 1-101 (175)
184 PF14696 Glyoxalase_5: Hydroxy 98.0 3.6E-05 7.8E-10 56.4 7.9 120 151-281 7-130 (139)
185 PF06983 3-dmu-9_3-mt: 3-demet 97.4 0.012 2.6E-07 42.1 12.7 96 32-145 11-116 (116)
186 PF14507 CppA_C: CppA C-termin 96.7 0.0038 8.2E-08 42.7 5.0 92 154-274 6-100 (101)
187 PF15067 FAM124: FAM124 family 96.6 0.03 6.4E-07 44.2 9.7 106 22-144 127-235 (236)
188 PF06983 3-dmu-9_3-mt: 3-demet 96.4 0.19 4E-06 35.9 11.9 96 162-275 11-116 (116)
189 PF15067 FAM124: FAM124 family 96.1 0.21 4.5E-06 39.6 11.7 125 132-274 108-235 (236)
190 PF14507 CppA_C: CppA C-termin 95.2 0.065 1.4E-06 36.7 5.3 89 23-143 5-99 (101)
191 PRK11700 hypothetical protein; 87.4 6.1 0.00013 30.5 8.2 78 152-231 38-119 (187)
192 COG3865 Uncharacterized protei 84.9 13 0.00029 27.3 12.0 103 29-147 11-124 (151)
193 cd07268 Glo_EDI_BRP_like_4 Thi 84.6 13 0.00029 27.5 8.4 76 154-231 2-81 (149)
194 PF06185 YecM: YecM protein; 84.5 11 0.00023 29.2 8.3 78 152-231 33-114 (185)
195 PF13670 PepSY_2: Peptidase pr 80.5 11 0.00025 24.7 6.5 45 102-148 30-74 (83)
196 PF13670 PepSY_2: Peptidase pr 76.5 7.2 0.00016 25.7 4.6 47 232-280 30-76 (83)
197 PRK11700 hypothetical protein; 75.1 37 0.00079 26.3 10.2 78 22-102 38-120 (187)
198 PF02208 Sorb: Sorbin homologo 73.4 1.7 3.7E-05 24.7 0.7 25 151-175 9-33 (47)
199 PF07063 DUF1338: Domain of un 66.7 14 0.00031 31.1 5.2 44 25-69 36-84 (302)
200 cd04882 ACT_Bt0572_2 C-termina 64.3 16 0.00034 22.3 4.0 26 222-247 39-64 (65)
201 cd04895 ACT_ACR_1 ACT domain-c 63.4 36 0.00077 21.9 5.5 40 103-142 15-55 (72)
202 PF07063 DUF1338: Domain of un 60.5 19 0.0004 30.5 4.8 31 218-248 180-216 (302)
203 PF06185 YecM: YecM protein; 60.1 80 0.0017 24.5 8.8 88 22-112 33-126 (185)
204 cd04883 ACT_AcuB C-terminal AC 55.2 30 0.00065 21.6 4.2 27 224-250 43-71 (72)
205 COG4747 ACT domain-containing 49.0 96 0.0021 22.1 8.7 114 103-250 17-136 (142)
206 cd07268 Glo_EDI_BRP_like_4 Thi 46.6 1.2E+02 0.0026 22.6 9.9 76 24-102 2-82 (149)
207 PF09142 TruB_C: tRNA Pseudour 45.2 42 0.0009 20.3 3.4 44 230-279 3-46 (56)
208 cd04897 ACT_ACR_3 ACT domain-c 42.7 93 0.002 20.2 5.3 40 103-142 15-55 (75)
209 TIGR00318 cyaB adenylyl cyclas 39.6 1.7E+02 0.0037 22.3 11.1 80 96-182 6-104 (174)
210 PF09066 B2-adapt-app_C: Beta2 39.0 1.3E+02 0.0029 20.9 7.6 68 101-172 36-107 (114)
211 COG4747 ACT domain-containing 37.8 36 0.00078 24.2 2.5 81 22-120 40-136 (142)
212 cd04906 ACT_ThrD-I_1 First of 37.4 64 0.0014 21.2 3.7 28 222-249 40-71 (85)
213 KOG4657 Uncharacterized conser 36.3 62 0.0014 25.8 3.9 35 162-199 145-179 (246)
214 cd04908 ACT_Bt0572_1 N-termina 35.6 68 0.0015 19.7 3.5 23 225-247 42-64 (66)
215 KOG4657 Uncharacterized conser 35.0 1E+02 0.0022 24.7 4.8 20 32-51 145-164 (246)
216 COG3865 Uncharacterized protei 32.6 2.1E+02 0.0045 21.3 9.4 35 232-277 90-124 (151)
217 PF08445 FR47: FR47-like prote 32.5 1.3E+02 0.0028 19.8 4.6 23 29-52 60-82 (86)
218 PF13176 TPR_7: Tetratricopept 32.3 37 0.00081 18.0 1.6 20 159-178 10-29 (36)
219 COG1225 Bcp Peroxiredoxin [Pos 31.7 2.1E+02 0.0045 21.7 5.9 21 259-279 120-140 (157)
220 PF03975 CheD: CheD chemotacti 30.2 79 0.0017 22.3 3.4 40 231-272 64-103 (114)
221 PTZ00330 acetyltransferase; Pr 29.8 81 0.0018 22.7 3.6 27 23-52 115-141 (147)
222 PRK13490 chemoreceptor glutami 29.6 1E+02 0.0023 23.4 4.1 43 228-272 109-151 (162)
223 PF07494 Reg_prop: Two compone 29.0 68 0.0015 15.3 2.1 13 261-273 8-20 (24)
224 PRK13495 chemoreceptor glutami 28.8 1.1E+02 0.0024 23.1 4.1 43 228-272 102-144 (159)
225 PRK13494 chemoreceptor glutami 26.9 1.3E+02 0.0027 23.0 4.1 43 228-272 111-153 (163)
226 PRK13497 chemoreceptor glutami 26.2 1.3E+02 0.0028 23.4 4.2 43 228-272 109-151 (184)
227 PRK13498 chemoreceptor glutami 26.1 1.3E+02 0.0028 23.0 4.1 43 228-272 112-154 (167)
228 PRK13493 chemoreceptor glutami 25.8 1.3E+02 0.0027 24.1 4.1 43 228-272 136-178 (213)
229 COG3254 Uncharacterized conser 25.6 1.9E+02 0.0042 20.1 4.4 35 234-280 27-61 (105)
230 PRK13491 chemoreceptor glutami 24.2 1.5E+02 0.0032 23.4 4.2 43 229-273 113-155 (199)
231 PF00583 Acetyltransf_1: Acety 23.9 1.1E+02 0.0023 19.2 3.0 25 153-178 58-83 (83)
232 PRK13488 chemoreceptor glutami 23.5 1.6E+02 0.0034 22.3 4.1 42 229-272 105-146 (157)
233 COG3603 Uncharacterized conser 23.1 98 0.0021 22.1 2.7 25 224-248 103-127 (128)
234 PF13508 Acetyltransf_7: Acety 22.9 99 0.0021 19.5 2.7 14 165-179 66-79 (79)
235 cd04885 ACT_ThrD-I Tandem C-te 22.4 1.5E+02 0.0033 18.2 3.4 26 92-117 38-66 (68)
236 PRK13487 chemoreceptor glutami 22.3 1.6E+02 0.0036 23.2 4.1 43 228-272 124-166 (201)
237 KOG3551 Syntrophins (type beta 22.0 1.5E+02 0.0033 26.0 4.1 35 135-173 232-266 (506)
238 COG0456 RimI Acetyltransferase 21.8 1.3E+02 0.0028 22.4 3.6 28 155-183 127-155 (177)
239 PF11080 DUF2622: Protein of u 21.5 1.5E+02 0.0033 20.3 3.3 31 102-147 22-52 (96)
240 COG1791 Uncharacterized conser 21.2 1.2E+02 0.0026 23.3 3.0 77 101-178 78-159 (181)
241 PF13523 Acetyltransf_8: Acety 21.0 2E+02 0.0044 20.8 4.4 34 153-187 112-146 (152)
242 PRK10562 putative acetyltransf 20.9 3E+02 0.0066 19.7 5.3 26 27-53 100-126 (145)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=3.4e-44 Score=299.20 Aligned_cols=275 Identities=89% Similarity=1.476 Sum_probs=223.6
Q ss_pred ccccccccCCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCC
Q 023245 11 QNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIG 90 (285)
Q Consensus 11 ~~~~~~~~~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 90 (285)
..-..|..+.+.+|.||+|.|+|++++++||+++|||++..+...+...+...|+..+....++.+++....+......+
T Consensus 12 ~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~ 91 (286)
T PLN02300 12 EDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIG 91 (286)
T ss_pred hhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccC
Confidence 33447988999999999999999999999999999999987665555556667777665445567777654333333445
Q ss_pred CCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCCCCceeEEEeecChHHHHHH
Q 023245 91 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINF 170 (285)
Q Consensus 91 ~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~~~~~hv~l~v~d~~~a~~F 170 (285)
.+..|++|.|+|+++++++++++|+++...+...++++.+.+||+||||+.|||++..+.+.++.|+.|.|+|++++.+|
T Consensus 92 ~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~F 171 (286)
T PLN02300 92 TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKF 171 (286)
T ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHH
Confidence 67889999999999999999999999988887777665566899999999999999988899999999999999999999
Q ss_pred HHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHHHHHHHhcCCeeccC
Q 023245 171 YKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITRE 250 (285)
Q Consensus 171 Y~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~ 250 (285)
|+++|||++......++.++...++.+........+++..+.+...+..+++.+|++|.|+|++++.++++++|+++..+
T Consensus 172 y~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~ 251 (286)
T PLN02300 172 YEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITRE 251 (286)
T ss_pred HHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecC
Confidence 99999999986544455566666665433322345666544333334557889999999999999999999999999999
Q ss_pred CccCCCCCceEEEEECCCCCeEEEeeccchhcccC
Q 023245 251 PGPLPGINTKITACLDPDGWKSVFVDNLDFLKELE 285 (285)
Q Consensus 251 ~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~~~~~ 285 (285)
|...++.+++.++|+||||+.|+|++..++.||+|
T Consensus 252 p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 252 PGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred CccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 88887655688999999999999999999999986
No 2
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=4e-32 Score=228.28 Aligned_cols=234 Identities=26% Similarity=0.314 Sum_probs=165.9
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
++++|+||.|.|+|++++++||+++|||++..+.. . .+++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999875532 1 24443222111233433322 12467899999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC---------------CCCCceeEEEee
Q 023245 100 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRV 161 (285)
Q Consensus 100 v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~---------------~~~~~~hv~l~v 161 (285)
|+ |+++++++|+++|+++...+. +... +.+||+||||+.|||++... .+.+++||+|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 689999999999998765432 2223 46999999999999986321 235789999999
Q ss_pred cChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCH---HHHHH
Q 023245 162 GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV---YKTAE 238 (285)
Q Consensus 162 ~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~---~~~~~ 238 (285)
.|+++|.+||+++|||++......+.+.....++..... .+.+.+.. ..+++++|+||.|+|. +++.+
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~ 215 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACD 215 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHHHHHHH
Confidence 999999999999999998765433333333344432211 22333321 1246889999999984 45688
Q ss_pred HHHhcCCe--eccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 239 AIKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 239 ~l~~~g~~--~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
+|+++|++ +...|..++.+...++|++||+|+.||++...
T Consensus 216 ~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 216 ILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 99999987 55566555444456799999999999998754
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=3e-32 Score=229.85 Aligned_cols=233 Identities=21% Similarity=0.241 Sum_probs=163.5
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
+++|+||+|.|+|++++++||+++|||++..+.. . .+++.......+..+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--~----~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--Q----RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--c----eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 6789999999999999999999999999875532 1 23343211112233433321 134678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccc-CCCCEEEEEEECCCCCeEEEEEcCCC---------------------CCCce
Q 023245 101 E---DVAKTVDLVKAKGGKVTREPGPV-KGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLC 155 (285)
Q Consensus 101 ~---di~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~dPdG~~iel~~~~~~---------------------~~~~~ 155 (285)
+ |+++++++|++.|+++...+... +..+ +.+||+||+|+.|||++.... ..+|+
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 147 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVG-RRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLD 147 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcc-eEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEE
Confidence 8 69999999999999876544322 2223 358999999999999974321 24689
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCce-EEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCH-
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV- 233 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~- 233 (285)
||+|.|+|++++.+||+++|||++......+++.. ...++..+.. ...+.+... .....++|+||.|+|+
T Consensus 148 Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 148 HCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD------PEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC------CCCCceEEEEEEcCCHH
Confidence 99999999999999999999999876543333322 2233432211 122222110 1122488999999864
Q ss_pred --HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 234 --YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 234 --~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
+++.++|+++|+++..+|..++...++.+||+|||||.||++
T Consensus 220 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 220 DVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred HHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 447789999999988777665543467899999999999998
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=8.5e-31 Score=219.08 Aligned_cols=233 Identities=18% Similarity=0.243 Sum_probs=165.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
+.+|+||+|.|+|+++|++||+++|||+...+.. . ...|+..+. .+..+.+.... ..++.+++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDS--RAHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCC--CceEEEEEECC-------cCCeeeEeeee
Confidence 4689999999999999999999999999764321 1 123555542 23344443321 13567899999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCccc--CCCCEEEEEEECCCCCeEEEEEcCCC------------------CCCceeE
Q 023245 101 ED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQV 157 (285)
Q Consensus 101 ~d---i~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~dPdG~~iel~~~~~~------------------~~~~~hv 157 (285)
++ ++++.++|+++|+++...+... ..+....++|+|||||.+|++..... +.+|+||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 8899999999999876554311 11233469999999999999863210 2378999
Q ss_pred EEeecChHHHHHHHHHhcCCeeeeeecCC--CC-ceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHH
Q 023245 158 MLRVGDLDRAINFYKKAFGMELLRKRDNP--DY-KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY 234 (285)
Q Consensus 158 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~ 234 (285)
.|.|+|++++.+||+++|||++......+ ++ .+...++.+... ...+.+... ....+++|++|+|+|.+
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCHH
Confidence 99999999999999999999987653221 11 112344443322 233443211 12457899999998877
Q ss_pred H---HHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 235 K---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 235 ~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+ +.++|+++|+ ....+.+++.+..+++|++||+|+.||+..
T Consensus 219 ~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 219 DVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred HHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 7 8999999999 555566665555788999999999999975
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=203.78 Aligned_cols=259 Identities=51% Similarity=0.869 Sum_probs=217.1
Q ss_pred cccccccCCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCC-----------CceEEEEeecCCCCCceEEEEEe
Q 023245 12 NVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTY 80 (285)
Q Consensus 12 ~~~~~~~~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~ 80 (285)
...+|...+-.|.-|+++.|.|.++++.||+++||+++....+++. ++|...++++|++..++++++..
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 4567999999999999999999999999999999999998888776 68888999999999999999999
Q ss_pred ccCCCccCCCCCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCCCCceeEEEe
Q 023245 81 NYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLR 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~~~~~hv~l~ 160 (285)
+.+...+..|++..|+.+.++|+-...+++...|.+ .++.-.+++.||||+.+++++..+.+.++..|.|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 999999999999999999999887777777665532 12233588999999999999988889999999999
Q ss_pred ecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHHHHHH
Q 023245 161 VGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAI 240 (285)
Q Consensus 161 v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~~~~l 240 (285)
|.|+++|+.||.++||+++.+. +.+++.+.++++++ ...|+|+.+...-.+..|.+...+++..+++..+.+.+
T Consensus 157 VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i 230 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI 230 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH
Confidence 9999999999999999999874 22345666777776 48889988777766667777777778889999999999
Q ss_pred HhcCCeeccCCc--cCCCCC-ceEEEEECCCCCeEEEeeccchhcccC
Q 023245 241 KLSGGKITREPG--PLPGIN-TKITACLDPDGWKSVFVDNLDFLKELE 285 (285)
Q Consensus 241 ~~~g~~~~~~~~--~~~~~~-~~~~~~~DPdG~~iei~~~~~~~~~~~ 285 (285)
+..+.++..+.. +.|+.. ..++-+-||||+.|+|+..+++++.++
T Consensus 231 K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 231 KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 999777666543 234432 356788999999999999999887764
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.93 E-value=2.9e-23 Score=177.99 Aligned_cols=223 Identities=22% Similarity=0.349 Sum_probs=152.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc------cCCCCCccE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGH 95 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~~ 95 (285)
++++||.|.|+|++++.+||.+.|||+........... ....+..+ ...+++..+....+ ...++++.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 46899999999999999999999999988763212221 22233322 24566665432221 125788999
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC-------------------------C
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP-------------------------T 150 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~-------------------------~ 150 (285)
++|.|+|++++++++.++|+++..+|.....+.....-++.++|..+.+++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999888766541122222233445555555554210 1
Q ss_pred CCCceeEEEeec--ChHHHHHHHHHhcCCeeeeeecCCC--CceEEEEeeeCCCCceeEEEecccCCC---c------cc
Q 023245 151 PEPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKYTIAVMGYGPEDKNAVLELTYNHGV---T------EY 217 (285)
Q Consensus 151 ~~~~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~---~------~~ 217 (285)
..+++||++.|. |++++++||+++|||++........ .+.....+. .......++|+++... . ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~--~~~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMA--SPDGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEE--CCCCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 235899999999 9999999999999999887654322 122111222 1122467787764211 1 12
Q ss_pred ccCCcceeEEEEeCCHHHHHHHHHhcCCeeccCC
Q 023245 218 DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREP 251 (285)
Q Consensus 218 ~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~ 251 (285)
..|.|++||||.|+|+++++++|+++|+++...|
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 3578999999999999999999999999988776
No 7
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.88 E-value=1.2e-20 Score=160.40 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=159.3
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCC--ceEEEEeecCCCCCceEEEEEeccCC-----------------
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV----------------- 84 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~----------------- 84 (285)
|+||.++|.|.+++..||+..|||+.+.......+ ......++.| ...+.+..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 68999999999999999999999998876542222 2223333322 234444443111
Q ss_pred --Cc----c--CCCCCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCC----CCEEEEEEECCCCCeEEEEEcCC---
Q 023245 85 --DK----Y--DIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 149 (285)
Q Consensus 85 --~~----~--~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~dPdG~~iel~~~~~--- 149 (285)
.. + .+|+++..|+|+|+|++++++++.++|++...+|....+ +.....-++.++|..+.|++...
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 01 1 357889999999999999999999999998887776533 22334556778888888876321
Q ss_pred --------------------CCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCC-----ceEEEEeeeCCCCcee
Q 023245 150 --------------------TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-----KYTIAVMGYGPEDKNA 204 (285)
Q Consensus 150 --------------------~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 204 (285)
...+|+||++.|.+++.++.||+++|||+.......++. +.+...+. .++...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~--sp~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLA--SNNEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEE--cCCCcE
Confidence 023689999999999999999999999998865543322 23444444 333357
Q ss_pred EEEecccCCC----c------ccccCCcceeEEEEeCCHHHHHHHHHhc----CCeeccCC
Q 023245 205 VLELTYNHGV----T------EYDKGNGYAQIAIGTDDVYKTAEAIKLS----GGKITREP 251 (285)
Q Consensus 205 ~l~l~~~~~~----~------~~~~~~~~~h~~~~v~d~~~~~~~l~~~----g~~~~~~~ 251 (285)
.++|.++... . ...+|+|++||||.|+|+.++.++|+++ |+++...|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 8888876421 1 1246799999999999999999999999 99999865
No 8
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=147.38 Aligned_cols=198 Identities=23% Similarity=0.339 Sum_probs=139.6
Q ss_pred cccCCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCC-ccCCCCCcc
Q 023245 16 WVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-KYDIGTGFG 94 (285)
Q Consensus 16 ~~~~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~ 94 (285)
+..++-+.+..|+|.|+|++++..||++++|+++..+.. ...-+..+.. ..+.+.+.+... ......|+.
T Consensus 3 ~~~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLy 73 (265)
T COG2514 3 FALTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLY 73 (265)
T ss_pred cccCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCcccccee
Confidence 345566789999999999999999999999999987754 2344554432 345555533322 223456899
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCC---------------------
Q 023245 95 HFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT--------------------- 150 (285)
Q Consensus 95 ~i~~~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~--------------------- 150 (285)
|++|.+++ +..++.++.+.|..+.+. .+. .-...+||.||+||.||++..++.
T Consensus 74 H~AfLlP~r~~L~~~l~hl~~~~~~l~Ga-~DH--~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ 150 (265)
T COG2514 74 HTAFLLPTREDLARVLNHLAEEGIPLVGA-SDH--LVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEA 150 (265)
T ss_pred eeeeecCCHHHHHHHHHHHHhcCCccccc-Ccc--hhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHH
Confidence 99999996 778888999999876532 211 223469999999999999876421
Q ss_pred ---------------CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc
Q 023245 151 ---------------PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT 215 (285)
Q Consensus 151 ---------------~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 215 (285)
...|.||.|.|.|+++|.+||+++|||.+..+. + ...|+..+ +.++.+....+....
T Consensus 151 ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~----~A~F~a~G--~YHHHia~N~W~s~~ 222 (265)
T COG2514 151 LLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--P----SALFLASG--DYHHHLAANTWNSRG 222 (265)
T ss_pred HhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--C----cceEEecC--CcceeEEEeccccCC
Confidence 245789999999999999999999999998762 2 24445533 345666666544332
Q ss_pred c-c--ccCCcceeEEEEeCCH
Q 023245 216 E-Y--DKGNGYAQIAIGTDDV 233 (285)
Q Consensus 216 ~-~--~~~~~~~h~~~~v~d~ 233 (285)
. . ..-.|+..+.+.+.+-
T Consensus 223 ~~~~~~~~~GLa~~~i~~~~~ 243 (265)
T COG2514 223 ARPRNANASGLAWLEIHTPDP 243 (265)
T ss_pred CCCCCCCCCCcceEEEEcCCc
Confidence 1 1 1235777788877663
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.87 E-value=7.2e-21 Score=149.57 Aligned_cols=128 Identities=32% Similarity=0.546 Sum_probs=104.8
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCC---------------ceeEEEecccCCCcc
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVTE 216 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~~ 216 (285)
-.++|+.|+|.|++++++||+++|||++..+...++.++++++++++... ....|||+++.+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 46899999999999999999999999999888888888899888654321 135889987765431
Q ss_pred ------cccC----CcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchh
Q 023245 217 ------YDKG----NGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 281 (285)
Q Consensus 217 ------~~~~----~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 281 (285)
+..| .|+.|+||.|+|+++++++|+++|+++...|....+ .+.+|++||||++|||+|.....
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 4333 589999999999999999999999999887754332 56789999999999999987754
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=3.7e-20 Score=140.01 Aligned_cols=135 Identities=47% Similarity=0.838 Sum_probs=101.5
Q ss_pred CCCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEE
Q 023245 149 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 228 (285)
Q Consensus 149 ~~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (285)
....++.|+.|.|.|+++|++||+++|||++......++.++.+.++..+.......+++...........+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34678999999999999999999999999987665444444445555543332334555543322222334568899999
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchhcc
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 283 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~~~ 283 (285)
.|+|+++++++|.++|+++..++...+.+..+.+|++||||+.|||++..+-++.
T Consensus 93 ~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 93 GVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred ecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 9999999999999999998887765555445778999999999999998876654
No 11
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=1.2e-19 Score=137.25 Aligned_cols=133 Identities=64% Similarity=1.104 Sum_probs=100.2
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
...++|+||.|.|.|+++|.+||+++|||++..+...+...+..+++..+.......+++...........+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 45689999999999999999999999999987665444444445566554333344555543322222333457889999
Q ss_pred EECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCC
Q 023245 99 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 151 (285)
Q Consensus 99 ~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~ 151 (285)
.|+|+++++++|.++|+++..++...+.+..+.+||+||+|+.|||++.....
T Consensus 93 ~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 145 (150)
T TIGR00068 93 GVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTK 145 (150)
T ss_pred ecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchh
Confidence 99999999999999999988777666666556788999999999999876543
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=5.5e-20 Score=135.53 Aligned_cols=122 Identities=49% Similarity=0.935 Sum_probs=93.3
Q ss_pred EEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHHH
Q 023245 158 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTA 237 (285)
Q Consensus 158 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~~ 237 (285)
.|.|.|+++|++||+++|||++......++..+.++++..++......+++........+..+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987765555556667777654433344566654333333445568899999999999999
Q ss_pred HHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 238 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 238 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
++|+++|+++...+.+.+++..+.+|++||||+.|||++..+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999999999887766555543456889999999999999875
No 13
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=7.2e-20 Score=141.31 Aligned_cols=130 Identities=29% Similarity=0.519 Sum_probs=100.8
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCC---------------ceeEEEecccCCCc
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVT 215 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 215 (285)
.-++.|+.|+|.|+++|++||+++|||++..+...++.+++++++.+.... ....|+|.++....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 357999999999999999999999999998886666777777777643210 23578887654322
Q ss_pred c------cc----cCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchhc
Q 023245 216 E------YD----KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLK 282 (285)
Q Consensus 216 ~------~~----~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~~ 282 (285)
. +. .+.++.|++|.|+|+++++++|+++|+++...|....+ .+.+|++||||+.|||++..+.++
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~~~ 179 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRIGG 179 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCchh
Confidence 1 22 12489999999999999999999999998876643222 467888999999999999988653
No 14
>PRK10291 glyoxalase I; Provisional
Probab=99.84 E-value=2e-19 Score=132.55 Aligned_cols=126 Identities=56% Similarity=1.039 Sum_probs=94.9
Q ss_pred EEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHHH
Q 023245 28 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 107 (285)
Q Consensus 28 ~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~~ 107 (285)
+|.|+|+++|++||+++|||++......+...+..+++..+.......+++...........+.+..|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987766555556666777655433334455554322233334567889999999999999
Q ss_pred HHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCCCC
Q 023245 108 DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 153 (285)
Q Consensus 108 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~~~ 153 (285)
++|+++|+++..++...+++..+.++|+||||+.|||++....+.+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 9999999998876666666655668899999999999997754433
No 15
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=3.8e-19 Score=139.87 Aligned_cols=127 Identities=37% Similarity=0.689 Sum_probs=101.3
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCC---------------CCceEEEEEeccCCC
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE---------------DSHFVVELTYNYGVD 85 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 85 (285)
--.+.|++|.|+|++++++||+++||+++..+.+++..++..+++.++.. +....|+|.++.+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 36799999999999999999999999999998888888888888865331 113478888754432
Q ss_pred c------cCCC----CCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 86 K------YDIG----TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 86 ~------~~~~----~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
. +..+ .|..||||.|+|+++++++|+++|+++...|....+ ...+|++||||++|||++...
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 1 2222 479999999999999999999999999877665433 346889999999999998754
No 16
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.83 E-value=2.3e-19 Score=133.40 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=93.5
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc------cccCCcceeEE
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE------YDKGNGYAQIA 227 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~~ 227 (285)
++|+.|.|.|++++++||+++|||++..+...+ +.....+..+ ...+.+........ ...+.+.+|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999988764322 1223333311 34555543222111 12456889999
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchhcc
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 283 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~~~ 283 (285)
|.|+|+++++++|+++|+++..+|...++ +.+.++++||||+.|||+|++.+++.
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCc
Confidence 99999999999999999999998876454 37899999999999999999988765
No 17
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=148.58 Aligned_cols=227 Identities=20% Similarity=0.357 Sum_probs=161.7
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCC--ceEEEEeecCCCCCceEEEEEeccCCC--c-----cCCC
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGVD--K-----YDIG 90 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~ 90 (285)
+..+++||.+.|.|...+..||+..|||+.....+.+.+ .++...++ +.. ..+.+..+..+. . ..+|
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~--~vFv~~s~~~p~~~~~G~~l~~Hg 89 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGK--IVFVFNSAYNPDNSEYGDHLVKHG 89 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCC--EEEEEecCCCCCchhhhhhhhhcc
Confidence 468899999999999999999999999998876543322 22222222 211 233333322221 1 2356
Q ss_pred CCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCC--CCEEEEEEECCCCCeEEEEEcCCC------------------
Q 023245 91 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT------------------ 150 (285)
Q Consensus 91 ~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~dPdG~~iel~~~~~~------------------ 150 (285)
.++..+||+|+|.+++.+.+.++|+++..+|....+ |..+.+.++.+......+++....
T Consensus 90 dgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp 169 (381)
T KOG0638|consen 90 DGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFP 169 (381)
T ss_pred cchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccC
Confidence 778889999999999999999999999999887665 445567778888777777664321
Q ss_pred ------CCCceeEEEeec--ChHHHHHHHHHhcCCeeeeeecCCCC-----ceEEEEeeeCCCCceeEEEecccCCCc--
Q 023245 151 ------PEPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDY-----KYTIAVMGYGPEDKNAVLELTYNHGVT-- 215 (285)
Q Consensus 151 ------~~~~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~~-- 215 (285)
..+++|++.+++ .++.+.+||.+.|||...+..+.+.- ..+.+.+. ..++...+.+.++....
T Consensus 170 ~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ 247 (381)
T KOG0638|consen 170 KLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKK 247 (381)
T ss_pred CCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCcc
Confidence 246899999998 48999999999999999988764421 11111122 11223455565543221
Q ss_pred --------ccccCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCc
Q 023245 216 --------EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPG 252 (285)
Q Consensus 216 --------~~~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~ 252 (285)
.+..|.|++|+++.++|+-.+.+.|+++|.++..+|.
T Consensus 248 ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps 292 (381)
T KOG0638|consen 248 KSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPS 292 (381)
T ss_pred HHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCH
Confidence 2468899999999999999999999999999998874
No 18
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.82 E-value=2.2e-18 Score=133.05 Aligned_cols=128 Identities=35% Similarity=0.660 Sum_probs=97.4
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCC---------------CceEEEEEeccCC
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNYGV 84 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~ 84 (285)
.-.++.|++|.|+|+++|++||+++|||++..+...+..++..+++.++... ....|+|..+.+.
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 4578999999999999999999999999998887767767777777643210 1246888764332
Q ss_pred Cc------cC----CCCCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 85 DK------YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 85 ~~------~~----~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
.+ +. .+.++.|++|.|+|+++++++|+++|+.+...|.... ....+|++||||++|||++...
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 21 21 1247899999999999999999999999886554322 2345788999999999998653
No 19
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=7.9e-19 Score=131.55 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=89.4
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCC-----------CceEEEEeeeCCCCceeEEEecccCCCc-----
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVT----- 215 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~----- 215 (285)
.+++||+|.|.|+++|++||++ |||++......++ .+..++++... .....++|.......
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 4789999999999999999998 9999875543221 12334444422 224567776532111
Q ss_pred --ccccCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 216 --EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 216 --~~~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
....+.++.|+||.|+|+++++++|+++|+++..++...+. +.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 11234678999999999999999999999998876654443 36789999999999999984
No 20
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=1.4e-18 Score=126.41 Aligned_cols=120 Identities=41% Similarity=0.755 Sum_probs=90.9
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCC-cccccCCcceeEEEEeCC
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-TEYDKGNGYAQIAIGTDD 232 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~~~v~d 232 (285)
+.|+.|.|+|+++|.+||+++|||++......++.+..++++..........+++...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999887654444445555565433112455666543322 223344578999999999
Q ss_pred HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 233 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
+++++++|+++|+++..+|... +..+.+||+||||+.|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 2367889999999999985
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=3.7e-18 Score=124.21 Aligned_cols=120 Identities=53% Similarity=0.927 Sum_probs=90.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC-CccCCCCCccEEEEEECC
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAVED 102 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~i~~~v~d 102 (285)
|.||+|.|+|+++|.+||+++|||++......++..+..+++..........+++...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887655444455556676543112345555543322 222334577899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
+++++++++++|+++..++... . +.+.+||+||+|+++|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 9999999999999998877655 3 334689999999999985
No 22
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=3.3e-18 Score=128.19 Aligned_cols=123 Identities=27% Similarity=0.338 Sum_probs=88.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCC-----------CceEEEEeecCCCCCceEEEEEeccCCC----
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVD---- 85 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~---- 85 (285)
+++++||+|.|+|+++|.+||++ |||++......++ ......++... .....+++.....+.
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCc
Confidence 46899999999999999999998 9999865543221 12233344322 233456666532111
Q ss_pred ---ccCCCCCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 86 ---KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 86 ---~~~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
....+.++.|+||.|+|+++++++|+++|+++..++...+++ .+.+|++||||+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 112345788999999999999999999999988766555544 4568999999999999974
No 23
>PLN02300 lactoylglutathione lyase
Probab=99.80 E-value=1.8e-18 Score=144.41 Aligned_cols=131 Identities=50% Similarity=0.859 Sum_probs=101.8
Q ss_pred CCCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEE
Q 023245 149 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 228 (285)
Q Consensus 149 ~~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (285)
....+++|+.|.|+|++++++||+++|||++..+...++..+...++..+.......+++....+......+.++.|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 45788999999999999999999999999987664444444555556544433345667754433323334568899999
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
.|+|+++++++|+++|+++...+...+++..+.+||+||||+.|||++...
T Consensus 100 ~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 100 AVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred EeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999988887666654577899999999999999754
No 24
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=3e-18 Score=124.06 Aligned_cols=114 Identities=29% Similarity=0.580 Sum_probs=85.7
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCC-----------CceEEEEeeeCCCCceeEEEecccCCCcccccCC
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGN 221 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (285)
++.|+.|+|+|+++|++||+++|||++..+...++ +.+.++.+.+.++.....++|.++.+...+..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68899999999999999999999999877655454 3444444554333446788998766655555555
Q ss_pred cceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 222 GYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 222 ~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+ |++|.|++. ++.++|+++|+++...+. .++|++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666666 566999999998876553 27899999999999974
No 25
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=4.9e-18 Score=126.21 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=92.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc------cCCCCCccEEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGHFG 97 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~~i~ 97 (285)
|+|+.|.|+|++++++||+++|||++......+ .....++.. ....+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999987664422 122233332 224555554322111 12455788999
Q ss_pred EEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCCCC
Q 023245 98 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 153 (285)
Q Consensus 98 ~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~~~ 153 (285)
|.|+|+++++++++++|+++..+|...+++. +.++++||||++|+|++.+...+.
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~-~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGEL-KIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeE-EEEEEeccCCcEEEEEecCCCCCc
Confidence 9999999999999999999998888866654 468999999999999998766443
No 26
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1.3e-17 Score=120.81 Aligned_cols=114 Identities=46% Similarity=0.892 Sum_probs=85.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCC-----------CceEEEEeecCCCCCceEEEEEeccCCCccCCCC
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT 91 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 91 (285)
++.|++|.|+|+++|++||+++|||++..+...+. +.+..+++.++.......+++....+..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999887765554 3444455655433456688888765544444444
Q ss_pred CccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 92 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+ |++|.|++. ++.++|+++|+++...+. + .++++||||+.||++.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 4 677777776 566999999998776443 2 5889999999999984
No 27
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=7e-18 Score=124.23 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=84.8
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCC-CceEEEEeecCCCCCceEEEEEeccCC---CccCCCCCccE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-DRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGH 95 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~ 95 (285)
.+.+|+||+|.|+|++++.+||+++|||++......+. ..+.. .+..+. ...+++...... .......++.|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 56789999999999999999999999999864322111 11211 122221 234555542211 11122346789
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++|.|+|+++++++|++.|+++...+....++. +.+||+||||+.||+++.
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 999999999999999999999765433333444 468999999999999873
No 28
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=2.2e-18 Score=130.52 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=87.8
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCC-CCceEEEEeeeCCCCc---eeEEEecccCCCcccccCCcceeEEE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPEDK---NAVLELTYNHGVTEYDKGNGYAQIAI 228 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (285)
+|+||+|.|+|+++|++||+++|||++......+ ..+....++....... ...+.+.. ..+.++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987654333 2333455555322110 01111111 12468999999
Q ss_pred EeCCHHHHH---HHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 229 GTDDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 229 ~v~d~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
.|+|++++. ++|+++|+++..++.++..+...++|++|||||.|||+....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999999986 999999999988777766554567899999999999997653
No 29
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=7.1e-18 Score=124.19 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCC-CceEEEEeeeCCCCceeEEEecccCCCc---ccccCCcceeEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-YKYTIAVMGYGPEDKNAVLELTYNHGVT---EYDKGNGYAQIA 227 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~h~~ 227 (285)
.+++||+|.|+|+++|.+||+++|||++......++ ..+.. .+.... ...+++....... ......++.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 568999999999999999999999999864322121 11111 111111 3455654322111 112235788999
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
|.|+|+++++++|+++|+++...+.. +..+.+.+||+||||+.|||+|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999997644322 2223678999999999999987
No 30
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.78 E-value=1.6e-17 Score=123.91 Aligned_cols=118 Identities=23% Similarity=0.415 Sum_probs=87.9
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
|+.+|+||.|.|+|++++.+||+++|||++..+.. ..+++..+. ..+.+...+..+....+.+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 67899999999999999999999999999875421 234454332 34444433222222223457799999
Q ss_pred EC--CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 100 VE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 100 v~--di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
++ |+++++++++++|+++...+...++++. .+||+|||||+||+.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 98 8999999999999998776666655554 699999999999999765
No 31
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.3e-17 Score=122.02 Aligned_cols=118 Identities=24% Similarity=0.396 Sum_probs=85.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc---cCCCCCccEEEEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHFGIA 99 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~~i~~~ 99 (285)
+++||+|.|+|++++.+||+++|||++......+...+...|+.++. ...+++........ .....+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865443333344455666542 23566654322211 1233578899999
Q ss_pred ECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 100 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 100 v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
|+| +++++++|+++|+++..+|...+++.+ .++++|||||.||+
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~-~~~~~DPdG~~iE~ 124 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYY-ESVILDPEGNRIEI 124 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeE-EEEEECCCCCEEEe
Confidence 964 899999999999998876655555443 47799999999997
No 32
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.1e-17 Score=122.28 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=84.2
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc---cccCCcceeEEEE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE---YDKGNGYAQIAIG 229 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~~~ 229 (285)
+++|++|.|+|++++.+||+++|||++......+..++...++..++ ...+++........ .....+..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57899999999999999999999999764432233333344444332 35566654322211 1223578999999
Q ss_pred eC---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 230 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 230 v~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999988766544332 45678999999999984
No 33
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.77 E-value=1.9e-17 Score=123.89 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=85.2
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCce-EEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEE
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIG 229 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (285)
+.+++|++|.|+|++++.+||+++|||++..+...+++.. ...++..+.. ...+.+.. ..+.++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec-------CCCCCceEEEEE
Confidence 4679999999999999999999999999866643222222 2233332221 22333321 113578999999
Q ss_pred eCCHHH---HHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 230 TDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 230 v~d~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
|+|+++ +.++|+++|+++...|.+++.+.++.+||+|||||.|||...
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999888 568999999998777766553346789999999999999764
No 34
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.3e-17 Score=120.54 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=84.8
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc---ccccCCcceeEEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT---EYDKGNGYAQIAI 228 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~h~~~ 228 (285)
.+++|++|.|.|+++|++||+++|||+.......++.....+.+.... ...+++....... ....+.+..|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 468999999999999999999999999876532222221122222111 2344544322211 1123467899999
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
.|+|+++++++|+++|+++...+..... +.+.+|++||+|+.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999999998775533333 3568999999999999986
No 35
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=3e-17 Score=125.45 Aligned_cols=126 Identities=29% Similarity=0.336 Sum_probs=86.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEee--CC----------------CCceEEEEeecCCCCCceEEEEEeccC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRD--IP----------------EDRYTNAFLGYGPEDSHFVVELTYNYG 83 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~ 83 (285)
.+++||+|.|+|+++|++||+++|||++..+.. .+ ......+++..+. ...+++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 579999999999999999999999998753210 00 1123445554432 23466665432
Q ss_pred CCcc-----CCCCCccEEEEEECCHHHHHHHHHHcCCeeecCC-cc-cCC-CCEEEEEEECCCCCeEEEEEcCCC
Q 023245 84 VDKY-----DIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP-GP-VKG-GNTVIAFIEDPDGYKFELLERGPT 150 (285)
Q Consensus 84 ~~~~-----~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~-~~-~~~-~~~~~~~~~dPdG~~iel~~~~~~ 150 (285)
.... ..+.+..|+||.|+|+++++++|+++|+++..++ .. .+. ...+.+||+||||+.|||++....
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 2111 1245789999999999999999999998754332 11 111 123579999999999999987643
No 36
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=2.1e-17 Score=126.31 Aligned_cols=126 Identities=23% Similarity=0.247 Sum_probs=87.3
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeee----cC--------------CCCceEEEEeeeCCCCceeEEEecccC
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKR----DN--------------PDYKYTIAVMGYGPEDKNAVLELTYNH 212 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~ 212 (285)
+.+++||+|.|+|+++|++||+++|||++..+. .. ......+.++..+. ...++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 356899999999999999999999999875321 10 01123444554332 3457776544
Q ss_pred CCcc-c----ccCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCccC--CCC-CceEEEEECCCCCeEEEeeccc
Q 023245 213 GVTE-Y----DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--PGI-NTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 213 ~~~~-~----~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~--~~~-~~~~~~~~DPdG~~iei~~~~~ 279 (285)
.... . ..+.+..|+||.|+|+++++++|+++|+++..++... ++. ..+.+|++||||+.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 3211 1 1246899999999999999999999998765433111 111 1368999999999999999765
No 37
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.4e-17 Score=121.36 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=87.5
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
+.+++|++|.|.|+++|.+||+++||+++..... . ...++..+.......+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4679999999999999999999999999876532 1 12234322212234555543211 136899999999
Q ss_pred CCHHHHH---HHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 231 DDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 231 ~d~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+|++++. ++|+++|+++...+...+.++.+.+||+||+|+.||+.....
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 9988876 599999999877666666554667999999999999986544
No 38
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=4.3e-17 Score=119.11 Aligned_cols=120 Identities=32% Similarity=0.433 Sum_probs=84.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCC-CceEEEEeecCCCCCceEEEEEeccCC---CccCCCCCccEEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-DRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFG 97 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~i~ 97 (285)
.+|+||+|.|.|++++.+||+++|||+.......++ ..+. ..+... .. ..+++...... .....+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~-~~--~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLN-GG--YQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecC-CC--cEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 689999999999999999999999999876543222 2222 222221 11 24444432211 1112345788999
Q ss_pred EEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 98 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 98 ~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
|.|+|++++++++++.|+++...+....++. ..+|++||+|+.||++|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTGK-RFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCce-EEEEEECCCCCEEEecC
Confidence 9999999999999999999876654444444 46899999999999975
No 39
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=2.1e-17 Score=121.47 Aligned_cols=119 Identities=23% Similarity=0.349 Sum_probs=85.1
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc-c---c--ccCCcceeE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-E---Y--DKGNGYAQI 226 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~~~~~~h~ 226 (285)
+++|+.|.|+|++++++||+++|||+.......++.+....++..+ ...++|....... . + ..+.++.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5899999999999999999999999987654333334455555432 2455554321111 1 1 124578899
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccC-CccCCCCCceEEEE--ECCCCCeEEEee
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITRE-PGPLPGINTKITAC--LDPDGWKSVFVD 276 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~--~DPdG~~iei~~ 276 (285)
||.|+|+++++++|+++|+++..+ |...+++ .+..|+ +||||++||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 4333332 455566 799999999986
No 40
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=4e-17 Score=117.48 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=84.1
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCH
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV 233 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~ 233 (285)
++|++|.|+|++++++||+++||+++..... ++..+ +.+..++ ...+.+....... ..+....|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999876532 22333 3333222 1223333222111 2335678999999999
Q ss_pred HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 234 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 234 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
++++++|+++|+++..+|...+++ ++.++++|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999888766643 689999999999999986
No 41
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=1.1e-16 Score=118.71 Aligned_cols=117 Identities=25% Similarity=0.329 Sum_probs=86.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
.+|+||+|.|+|+++|++||+++|||++..... . ...|+..+....+..+.+..... ...++.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 579999999999999999999999999865432 1 23566543222334555543221 1357899999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 di~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
|++++. ++|+++|+++...+...+.++...+||+||+|+.||+....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 977776 59999999877655555555555689999999999999653
No 42
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=3.8e-17 Score=123.77 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=84.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCC-CCceEEEEeecCCCCC---ceEEEEEeccCCCccCCCCCccEEEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDS---HFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
+|+||+|.|+|+++|++||+++|||++......+ ..+....|+..+.... ...+.+.. ..+.++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987654433 2223456665532110 00111111 11467899999
Q ss_pred EECCHHHHH---HHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 99 AVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 99 ~v~di~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
.|+|++++. ++|+++|+++...+.....+....+|++||+|+.||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 999999986 9999999998766555544444457999999999999855
No 43
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=1.6e-16 Score=118.83 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=83.8
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCc-eEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
++++|+||+|.|+|++++.+||+++|||++..+...+.+. ....|+..+.. ...+.+... .+.++.|++|
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEE
Confidence 4678999999999999999999999999986654332222 23456654332 222333221 1346889999
Q ss_pred EECCHHH---HHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 99 AVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 99 ~v~di~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
.|+|+++ +.++|+++|+++...|.....+....+||+|||||.||+.+.
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999777 568999999987655543332223359999999999999764
No 44
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=1.2e-16 Score=116.52 Aligned_cols=116 Identities=28% Similarity=0.321 Sum_probs=82.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
+++|+||.|.|+|++++++||+++|||++..... .. .+++..........+.+... ...+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6789999999999999999999999999865431 11 24444322222233444321 134678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 101 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 101 ~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+ |+++++++|+++|+++...|.....+....+||+|||||.||+.+..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999887644333323223699999999999998653
No 45
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=8.9e-17 Score=117.16 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
+.+++|+.|.|.|+++|++||+++|||++....+ +. .++ +..........+.+.. ....+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~~-~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RVY-LKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eEE-EEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 4679999999999999999999999999876521 11 122 2211111123344421 1234678999999
Q ss_pred C---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 231 D---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 231 ~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+ |+++++++|+++|+++...|.....+.++.+||+|||||.||+....+
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 6 889999999999999876554333333578999999999999987643
No 46
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=5.8e-17 Score=119.05 Aligned_cols=119 Identities=32% Similarity=0.525 Sum_probs=85.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc------cCCCCCccEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGHF 96 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~~i 96 (285)
+|+|++|.|+|++++++||+++|||+.......+..++..+++..+. ..+++........ ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999875543333344555555432 2455554311111 0124567899
Q ss_pred EEEECCHHHHHHHHHHcCCeeecC-CcccCCCCEEEEEE--ECCCCCeEEEEE
Q 023245 97 GIAVEDVAKTVDLVKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 146 (285)
Q Consensus 97 ~~~v~di~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~--~dPdG~~iel~~ 146 (285)
||.|+|+++++++|+++|+++..+ |...++|.. .+++ +||||+.||+.|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998764 555555443 4566 799999999975
No 47
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.73 E-value=1.4e-16 Score=121.79 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=82.7
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
+.+|+||+|.|+|+++|++||+++|||++......++......++..... ...+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEec-------CCCCceeEEEEEc
Confidence 46799999999999999999999999998755332233222333332211 23333321 1245789999999
Q ss_pred CC---HHHHHHHHHhcCCee--ccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 231 DD---VYKTAEAIKLSGGKI--TREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 231 ~d---~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+| ++++.++|+++|+.. ...|..++....+++|++|||||.||+++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 76 777888999999863 23344443333567999999999999986543
No 48
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.73 E-value=2.4e-16 Score=120.91 Aligned_cols=124 Identities=22% Similarity=0.344 Sum_probs=88.7
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
+.+.+|+|++|.|+|++++++||+++|||++......+.......|+.... ....+.+..... ....++.|++|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCCC----CCCCCceEEEE
Confidence 457899999999999999999999999999876644333333345665432 222343332111 12235789999
Q ss_pred EECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 99 AVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 99 ~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
.|+| +++++++|+++|+++...|.....+....+|++||+|++||+.+.+
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9986 5588899999999987666555444444689999999999999863
No 49
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.73 E-value=1.5e-16 Score=118.62 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=84.9
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.++.|+.|.|+|++++.+||+++|||++..+.. ...++..+ ...+.+...........+.++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999875421 12223322 23444433222111122356789999997
Q ss_pred --CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 232 --DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 232 --d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|+++++++|+++|+++...+...+.+ ++.+|++|||||.|||.+..
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999987766555443 68999999999999998654
No 50
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.73 E-value=2.3e-16 Score=113.47 Aligned_cols=114 Identities=25% Similarity=0.262 Sum_probs=83.3
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCH
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 103 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di 103 (285)
+.|++|.|+|++++++||+++||+++..... +...+ +++..+. ...+.+....... .......+++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875542 22232 3344332 1122333222111 2234567899999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 104 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 104 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
++++++|+++|+++..+|...++++. .++++|||||.|+++|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999999888887775554 6999999999999975
No 51
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.5e-16 Score=115.03 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=84.9
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc--ccccCCcceeEEEEeCCH
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDV 233 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~~~v~d~ 233 (285)
||.|.|.|++++++||+++|||++.......+ +..++.+..... ....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987643222 233444432211 03445544332221 112345788999999999
Q ss_pred HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 234 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 234 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
++++++|+++|+++..++.+..+ ++.++++||+|+.|||+|
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999887744433 589999999999999975
No 52
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.73 E-value=1.9e-16 Score=120.09 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=89.2
Q ss_pred CCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCC---CCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeE
Q 023245 150 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP---DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQI 226 (285)
Q Consensus 150 ~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (285)
.+.+|+||+|.|.|++++.+||+++|||++....... .....+.++..+.. ...+.+... ..+.++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEEE
Confidence 3578999999999999999999999999986542221 11334445543221 233444321 124678999
Q ss_pred EEEeCCHH---HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 227 AIGTDDVY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 227 ~~~v~d~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+|.|+|.+ +++++|+++|+++...+..++.+..+.+|++||+|+.|||.....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99998765 589999999999987776666555688999999999999986644
No 53
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.73 E-value=4.8e-17 Score=119.26 Aligned_cols=120 Identities=28% Similarity=0.416 Sum_probs=84.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeC--CCCceEEEEeecCCCCCceEEEEEeccCCCccCC---CCCccEEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDI--PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI---GTGFGHFG 97 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~~i~ 97 (285)
+|+||+|.|+|++++.+||+++|||++...... ........++..+ ...+.+............. .....|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG--EGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST--SSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc--ccceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999887662 2223334444433 3334444443322211111 01345666
Q ss_pred EEEC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 98 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 98 ~~v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
+.+. |+++++++|++.|+++..++.....+....+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6665 6888999999999999988887777777667899999999996
No 54
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.72 E-value=2.7e-16 Score=119.25 Aligned_cols=122 Identities=23% Similarity=0.360 Sum_probs=88.2
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCC---CCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 95 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 95 (285)
..-++|+||+|.|+|++++++||+++|||++....... ......+++..+.. +..+.+... ..+.++.|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEE
Confidence 34578999999999999999999999999986553322 11233556655322 223333322 11357889
Q ss_pred EEEEECCHH---HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 96 FGIAVEDVA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 96 i~~~v~di~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
++|.|+|++ +++++|+++|+++..++...+.++...+|++||+|+.||+....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 999998754 68999999999988776655555555699999999999998654
No 55
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.7e-16 Score=115.27 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=80.3
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecc----cCCCcccccCCcceeEEE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY----NHGVTEYDKGNGYAQIAI 228 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~h~~~ 228 (285)
++.++.|.|.|+++|++||+++|||++..... .. ..+.. ...+.+.. .........+....|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTFEG------GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEEec------cceeccchhhhccCCcccccccCCceEEEE
Confidence 57899999999999999999999999864321 11 11111 11111110 001111223345679999
Q ss_pred EeCCHHHHHHHHHhcCC-eeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 229 GTDDVYKTAEAIKLSGG-KITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
.|+|+++++++|+++|+ ++..+|...+++ .+.++|+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 688888777764 6899999999999999874
No 56
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.8e-16 Score=115.23 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=80.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEe----ccCCCccCCCCCccEEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY----NYGVDKYDIGTGFGHFG 97 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~~i~ 97 (285)
+++.|+.|.|+|+++|++||+++|||++..... . . ..+. + . +.+.+.. .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~--~~~~-~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N--VTFE-G--G--FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e--EEEe-c--c--ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864321 1 1 1111 1 1 1111110 00011112233457999
Q ss_pred EEECCHHHHHHHHHHcCC-eeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 98 IAVEDVAKTVDLVKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 98 ~~v~di~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
|.|+|+++++++|+++|+ ++..+|...++|.+ .++|+|||||+|||.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r-~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQR-VVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccE-EEEEECCCCCEEEEecc
Confidence 999999999999999986 68888888888765 69999999999999864
No 57
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=2.4e-16 Score=117.41 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=83.9
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCH-
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV- 233 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~- 233 (285)
.||.|.|+|++++.+||+++|||++..+.. . ...++..........+.+.. ....+++|++|.|+|.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 489999999999999999999999876532 1 23444432221223333321 1246899999999765
Q ss_pred --HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 234 --YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 234 --~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
++++++|+++|+++...|.+++.+..+.+||+||+|+.||+.-.-.
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 4679999999999888887766555788999999999999976543
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=5.9e-16 Score=114.26 Aligned_cols=116 Identities=30% Similarity=0.444 Sum_probs=87.0
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHH
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 104 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~ 104 (285)
+||+|.|+|++++++||+++||+++......+ ......|+..+. ....+.+..... .++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~~------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGPE------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCCC------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999987655433 323456666543 223454443211 457889999999864
Q ss_pred ---HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 105 ---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 105 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
++++++++.|+++...+...+.+..+.++|+||+|++|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 788999999999887776655544556899999999999997654
No 59
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=3.9e-16 Score=118.48 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=83.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc-cCCCCCccEEEEEEC
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVE 101 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~i~~~v~ 101 (285)
+|+||+|.|+|++++.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999876543 1 223333221 2335677765432221 122346789999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
| +++++++|++.|+.+.. +... +..+.+||+||+|+.||+++..
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 99999999999997542 2332 2345699999999999999864
No 60
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=3.8e-16 Score=114.03 Aligned_cols=117 Identities=21% Similarity=0.361 Sum_probs=84.4
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCC---cccccCCcceeEEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV---TEYDKGNGYAQIAI 228 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~h~~~ 228 (285)
.+++|+.|.|.|++++++||+++|||+....... ..... +..+. ..+.+...... .....+.+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~~~~~--~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--VGRKA--LRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeeccccc--CCceE--EEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 4689999999999999999999999998765321 12222 22221 34444432221 11223467899999
Q ss_pred EeCC-HHHHHHHHHhcCCeeccCCccCCC--CCceEEEEECCCCCeEEEee
Q 023245 229 GTDD-VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 229 ~v~d-~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DPdG~~iei~~ 276 (285)
.+++ +++++++|+++|+++...|....+ +.++.+||+||||+.||+++
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 999999999999998877754432 22578999999999999986
No 61
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.72 E-value=2.1e-16 Score=116.58 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=81.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECC-
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED- 102 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~d- 102 (285)
|+||.|.|+|++++.+||+++|||++..... . ..++..+. ..+.+...+..+......+..|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~--~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----K--TAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----c--cceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 1 23444332 34444433222211223467899999984
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 103 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 103 -i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+++++++|++.|+++..++....++++ .+||+|||||.||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 999999999999987755544444444 699999999999999764
No 62
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.72 E-value=5.2e-16 Score=114.51 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=82.3
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCce-EEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
|+.+|+||+|.|+|++++.+||+++||+.+..+........ ...++..+. ..+.+..... ....++.|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~----~~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDS----LQERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCC----CCCCCceEEEE
Confidence 67899999999999999999999999998765532211000 011222221 2455543211 11236789999
Q ss_pred EEC--CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 99 AVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 99 ~v~--di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
.|+ ++++++++|+++|+++..+ .....+..+.+||+|||||.+|+...
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecC
Confidence 998 7999999999999987643 33333333469999999999999865
No 63
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.71 E-value=2.6e-16 Score=114.49 Aligned_cols=115 Identities=27% Similarity=0.358 Sum_probs=82.2
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
+++++.|+.|.|+|++++++||+++|||++..... . .+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D--RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C--eEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 47899999999999999999999999999865421 1 24443222122233333321 12467899999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 100 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 100 v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
|. |+++++++++++|+++...|.....+..+.+|+.||||+.||++..
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 94 6999999999999988665443333333469999999999999854
No 64
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=4.4e-16 Score=113.87 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=80.5
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccC--------CC--cccccCCcc
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH--------GV--TEYDKGNGY 223 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~~--~~~~~~~~~ 223 (285)
+.|+.|.|+|++++++||+++|||++..... +..+.. +..+ ...+.+.... .. ......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 5799999999999999999999999865422 222221 1111 1121111110 00 011122345
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 224 AQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 224 ~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
.|++|.|+|+++++++++++|+++..++...+++ .+.++++|||||.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 7999999999999999999999998888777765 6789999999999999874
No 65
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=8.5e-16 Score=111.93 Aligned_cols=115 Identities=24% Similarity=0.262 Sum_probs=83.5
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCccc----ccCCcceeEEEEeCC
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY----DKGNGYAQIAIGTDD 232 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~~~~h~~~~v~d 232 (285)
..|.|+|+++|++||+++|||++......+++......+..+ ...+.+......... ..+.+..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999998765333333333334432 123333322211111 233567899999999
Q ss_pred HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 233 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+++++++|+++|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999888777764 688999999999999964
No 66
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.71 E-value=2.6e-16 Score=116.08 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=82.3
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC--
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 231 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~-- 231 (285)
|+||.|.|+|++++.+||+++|||++.... +. ... +..+ ...+.+.............++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~~-~~~--~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---EK-TAY--FTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---Cc-cce--EeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 689999999999999999999999986531 11 111 2222 24444433222211122357889999997
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
|+++++++|+++|+++..++..... .++.+||+|||||.|||.+...
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcH
Confidence 4999999999999998755543333 3688999999999999998765
No 67
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=6.9e-16 Score=112.67 Aligned_cols=118 Identities=29% Similarity=0.446 Sum_probs=84.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC---CccCCCCCccEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFG 97 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~i~ 97 (285)
+++|+|+.|.|+|++++++||+++|||+.....+. ..+ .++..+. ..+.+...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~~~--~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--VGR--KALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeeccccc--CCc--eEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 46899999999999999999999999998755431 122 3333332 24454432211 1122345788999
Q ss_pred EEECC-HHHHHHHHHHcCCeeecCCcccCC--CCEEEEEEECCCCCeEEEEE
Q 023245 98 IAVED-VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 98 ~~v~d-i~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~dPdG~~iel~~ 146 (285)
|.+++ +++++++++++|+++...+....+ +....+||+||||+.+|+++
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998776654332 22346899999999999986
No 68
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.71 E-value=4.1e-17 Score=119.59 Aligned_cols=120 Identities=28% Similarity=0.311 Sum_probs=80.8
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecC--CCCceEEEEeeeCCCCceeEEEecccCCCccccc---CCcceeEE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDN--PDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDK---GNGYAQIA 227 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~h~~ 227 (285)
+|+||++.|+|++++++||+++|||++...... .........+. .+.....+............. +....|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLR--IGEGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEE--STSSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeec--ccccceeeeeeccccccccccccccccceeEE
Confidence 489999999999999999999999999988652 22222333344 222233333332222211111 01334555
Q ss_pred EE---eCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEE
Q 023245 228 IG---TDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 274 (285)
Q Consensus 228 ~~---v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei 274 (285)
+. ++|+++++++|++.|+++..++.....+....+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 55 567888999999999999988876666545556899999999997
No 69
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=8.1e-16 Score=112.23 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=81.6
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
|.++++|+.|.|+|+++|++||+++|||+..... +.+ .++..+. ...+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 4578999999999999999999999999986532 112 2333322 2345444321 12245789988
Q ss_pred EC--CHHHHHHHHHHcCCeeecCCccc-------CCCCEEEEEEECCCCCeEEEEEc
Q 023245 100 VE--DVAKTVDLVKAKGGKVTREPGPV-------KGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 100 v~--di~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
|+ |+++++++++++|+++...|... .+++ +.+||+|||||.||+++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~-~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGG-RGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCe-eEEEEECCCCCEEEEEec
Confidence 86 69999999999999987665543 2344 579999999999999976
No 70
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.70 E-value=7.5e-16 Score=112.10 Aligned_cols=114 Identities=21% Similarity=0.311 Sum_probs=82.1
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
+.+.+|+|+.|.|+|++++.+||+++|||++..+.+ ...++..........+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 457899999999999999999999999999875532 134554432222334444322 1346789999
Q ss_pred EEC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 99 AVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 99 ~v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
.|+ ++++++++++++|+++...+.. +..+ ..+||+|||||.+|+...
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~-~~~~-~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGD-PGHG-KAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCC-CCCc-ceEEEECCCCCEEEEEEe
Confidence 997 4889999999999986432222 2223 358999999999999864
No 71
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=5.8e-16 Score=117.53 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=84.3
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc-cccCCcceeEEEEeC
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTD 231 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~ 231 (285)
+++||+|.|+|++++.+||+++|||++..... . .+.+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47999999999999999999999999876532 2 222222111 1246667655322211 122357889999999
Q ss_pred C---HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 232 D---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 232 d---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
| +++++++|+++|+++.. +...++ .+.+||+||||+.|||+...+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~~~--~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDRFY--FKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccccc--EEEEEEECCCCcEEEEEECCC
Confidence 8 89999999999997543 333332 578999999999999998753
No 72
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.70 E-value=1.2e-15 Score=116.48 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=80.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
++|+||+|.|+|++++++||+++|||++......+.......++..+.. ...+.+... .++++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEcC
Confidence 5899999999999999999999999998654433233323345543221 223333321 2346889999998
Q ss_pred C---HHHHHHHHHHcCCee--ecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 D---VAKTVDLVKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 d---i~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
| +++++++|+++|+.. ...|......+...+||+||||+.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 788889999999852 2233322222334689999999999998643
No 73
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=1.4e-15 Score=111.17 Aligned_cols=117 Identities=25% Similarity=0.410 Sum_probs=84.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC-CccCCCCCccEEEEEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAV 100 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~i~~~v 100 (285)
++|+||+|.|+|++++.+||+++|||++..... . .+++..+. ....+.+...+.. .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 579999999999999999999999999986531 1 34554432 2345555554322 1223345688999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 101 ED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 101 ~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
++ +++++++++++|+++..+ ..... .+.+||+||||+++|+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 74 999999999999987543 32222 246899999999999987654
No 74
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.70 E-value=8.8e-16 Score=113.33 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=85.2
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHH
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY 234 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~ 234 (285)
+||.|.|+|+++|++||+++||+++......+ ......++..+. ....+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654322 222333443222 13345544311 1467899999999875
Q ss_pred ---HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 235 ---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 235 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+++++|+++|+++..++...+.+..+.++++||||+.|||++...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999888776555544678899999999999997654
No 75
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=6.4e-16 Score=113.04 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=80.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEe---c---cCC--CccCCCCCccE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY---N---YGV--DKYDIGTGFGH 95 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~---~---~~~--~~~~~~~~~~~ 95 (285)
+.|+.|+|+|++++.+||+++|||+...... ...+. .+..+ ...+.+.... . ... ......++..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999864432 22221 12111 1111111111 0 000 01111233468
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++|.|+|+++++++++++|+++..++...++|.+ .++++|||||.|++++.
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQT-VAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcE-EEEEECCCCCEEEEecC
Confidence 9999999999999999999999888888888765 58999999999999863
No 76
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=6.3e-16 Score=113.45 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=85.7
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCC-CCceEEEEeeeCCCCceeEEEecccCCCc-c-----cccCCcceeE
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPEDKNAVLELTYNHGVT-E-----YDKGNGYAQI 226 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~~~~h~ 226 (285)
|+||.|.|.|++++++||+++|||+........ +....++++..+ ...+++..+.... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999998765433 233444455432 3555655432211 1 1345788999
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCC---CCeEEEee
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPD---GWKSVFVD 276 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPd---G~~iei~~ 276 (285)
+|.|+|+++++++++++|+++..++.....+ ++.+++.||+ |+.|||+|
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999998877544443 4555555555 99999986
No 77
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=7.2e-16 Score=111.50 Aligned_cols=117 Identities=24% Similarity=0.292 Sum_probs=83.1
Q ss_pred EEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCC--ccCCCCCccEEEEEECCH
Q 023245 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGHFGIAVEDV 103 (285)
Q Consensus 26 hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~~i~~~v~di 103 (285)
||+|.|.|++++.+||+++|||++..+..... +...+.+.... .....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654212 22222232211 113455555433221 112345678999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 104 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 104 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
++++++|+++|+++..++....+ + +.++++||+|+.|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~-~-~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY-G-TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC-c-eEEEEECCCCCEEEEeC
Confidence 99999999999998887744443 3 46999999999999974
No 78
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.70 E-value=4.1e-16 Score=111.71 Aligned_cols=113 Identities=23% Similarity=0.214 Sum_probs=81.1
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc-cccCCcceeEEEEeCC
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD 232 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d 232 (285)
|+|++|.|.|++++++||+++|||++......+. ...+ +..+. ...+.+........ ...+.+..|++|+|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~~--~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PGAW--LYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-CceE--EEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999876532221 1122 22222 13445543322211 1234567899999999
Q ss_pred HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEE
Q 023245 233 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 274 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei 274 (285)
+++++++++++|+++..++.. .. +.+.++++||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 999999999999998887754 22 25789999999999996
No 79
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.70 E-value=8.5e-16 Score=115.05 Aligned_cols=114 Identities=16% Similarity=0.292 Sum_probs=84.4
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.+++|+.|.|.|++++++||+++|||++..... . ...++..+.. ...+.+... ..+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 478999999999999999999999999864421 1 1233433322 234444321 1357889999999
Q ss_pred CHHHHH---HHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 232 DVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 232 d~~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
|++++. ++|+++|+++..++.....+..+++||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 988875 899999999887765544444567899999999999998755
No 80
>PRK06724 hypothetical protein; Provisional
Probab=99.70 E-value=1.3e-15 Score=111.42 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHcc---CCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 95 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 95 (285)
+|+.+|+||.|.|+|+++|++||+++| |++...... + . ... ..+.+...... .....+..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g~--~~l~l~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TGE--SEIYFKEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CCC--eeEEEecCCcc--ccCCCCcee
Confidence 477899999999999999999999966 666532111 1 0 111 11222211111 111346789
Q ss_pred EEEEE---CCHHHHHHHHHHcCCeeecCCcccCC--CCEEEEEEECCCCCeEEEEEcCC
Q 023245 96 FGIAV---EDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 96 i~~~v---~di~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
+||.| +++++++++|+++|+++..+|...+. .+.+.++|+||||+.||+...++
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 99998 67999999999999998777665442 34456899999999999987743
No 81
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=2.8e-15 Score=109.18 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=83.3
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc--cCCCCCccEEEEEECCHH
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIAVEDVA 104 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~i~~~v~di~ 104 (285)
-.|.|+|++++++||+++||+++......+.+......+..++ ..+.+.......... .....+..+++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 3588999999999999999999987654334333334454432 222232211111110 112345678999999999
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 105 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 105 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+++++++++|+++..+|...++|.+ .++++|||||+|+|.+
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~~g~~-~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 81 AHYERARAAGAEILREPTDTPYGSR-EFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHCCCEEeeCccccCCCcE-EEEEECCCCCEEEEec
Confidence 9999999999999988888888765 5899999999999864
No 82
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=6.3e-16 Score=112.94 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=82.6
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
++.+|.||.|.|+|+++|.+||+++|||++..+.. ...|+..+. .+..+.+.... ++..|++|.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~--~~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDA--RDHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCC--ccEEEEEEeCC--------CceEEEEEE
Confidence 56899999999999999999999999999864421 135665543 23344444321 245689999
Q ss_pred ECC---HHHHHHHHHHcCCeeecCCcccC--CCCEEEEEEECCCCCeEEEEEcC
Q 023245 100 VED---VAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 100 v~d---i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
|+| +++++++++++|+++...+.... .+....+||+|||||.||+...+
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 986 99999999999998766543221 22334579999999999998654
No 83
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.69 E-value=1.1e-15 Score=111.82 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=82.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCC-ceEEEEeecCCCCCceEEEEEeccCCCc--cCCCCCccEEEEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIA 99 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~i~~~ 99 (285)
+|+||+|.|.|++++.+||+++|||+.......... .....++..........+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 579999999999999999999999998766543221 1122333322111223566654332221 1223457899999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 100 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 100 v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
|+ ++++++++++++|+++...+.. ++ .+.+||+||+|++||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cc-eEEEEEECCCCCEEEeC
Confidence 98 4799999999999987654322 33 44699999999999984
No 84
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=2.6e-15 Score=110.28 Aligned_cols=116 Identities=22% Similarity=0.376 Sum_probs=84.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHcc---CCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc--c-CCCCCccEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK--Y-DIGTGFGHF 96 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~-~~~~~~~~i 96 (285)
+|+||+|.|.|++++.+||+++| ||++..... .. ..|... .....+.+.......+ . ..+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999876542 11 133322 1224556655433221 1 234567899
Q ss_pred EEEECC---HHHHHHHHHHcCCeeecCCccc--CCCCEEEEEEECCCCCeEEEEE
Q 023245 97 GIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 97 ~~~v~d---i~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+|.|+| +++++++|+++|+++...+... ..++.+.+|++||+|+++||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 999974 8999999999999988876642 2234457999999999999985
No 85
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=1.3e-15 Score=112.33 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=81.1
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCC--ceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY--KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIG 229 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (285)
.+++|++|.|+|++++.+||+++||+++..+...... ....++. .+ ...+++..... ....++.|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IG----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cC----CeEEEEecCCC----CCCCCceEEEEE
Confidence 4789999999999999999999999987654321100 0001111 11 23455542111 112468899999
Q ss_pred eC--CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 230 TD--DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 230 v~--d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|+ |+++++++|+++|+++..+. ....+.++.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 97 79999999999999876433 22333368999999999999998654
No 86
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.69 E-value=2e-15 Score=108.47 Aligned_cols=111 Identities=22% Similarity=0.321 Sum_probs=80.5
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
+.+|+||.|.|+|+++|.+||++ |||++..+.. . ..|+..+.. ....+ +.... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-~~~~~-~~~~~------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-DPFVY-VARKG------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-ccEEE-EcccC------CcCcccEEEEEE
Confidence 47899999999999999999999 9999865421 1 345543322 22222 22111 124678999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 101 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 101 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+|.+++.+.+++.|+.....+. .++++. .++|+|||||.||++...
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEecc
Confidence 9999999999999998765432 455554 689999999999998653
No 87
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=2.6e-15 Score=109.18 Aligned_cols=116 Identities=25% Similarity=0.241 Sum_probs=84.6
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc--ccccCCcceeEEEEeCCHH
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDVY 234 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~~~v~d~~ 234 (285)
+.|.|.|++++.+||+++|||++......+++......+..+ ...+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 468899999999999999999988765434444334434432 2344444321110 1123356789999999999
Q ss_pred HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 235 KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 235 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
++++++.+.|+++..++...+++ .+.++++||||+.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEecC
Confidence 99999999999998888655554 6899999999999999873
No 88
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=9.5e-16 Score=112.11 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=82.5
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCC-ceEEEEeeeCCCCceeEEEecccCCCcc--cccCCcceeEEEE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-KYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIG 229 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~ 229 (285)
+|+||+|.|.|+++|.+||+++|||++.......+. ....+++..........++|........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998776432221 1122222211112234566654333211 1223467899999
Q ss_pred eC---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 230 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 230 v~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
|+ |+++++++++++|+++...+. . . +.+.+|++||+|+.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~-~-~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H-F-GERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e-c-ceEEEEEECCCCCEEEeC
Confidence 98 569999999999999865443 2 2 268899999999999985
No 89
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.68 E-value=1.9e-15 Score=115.96 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
..+|+|++|.|+|++++++||+++|||++..............++..... ...+.+..... ....++.|+||.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEEEC
Confidence 45789999999999999999999999998765433322222233332221 22333322111 1224679999999
Q ss_pred CCHH---HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 231 DDVY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 231 ~d~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
+|.+ +++++|+++|+++...|.........++|++||||+.|||+..
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 8655 6788999999998767665544334568999999999999987
No 90
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=1.3e-15 Score=111.16 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.++.|+.|.|.|+++|++||+++|||++.... ..+..+.+. . ...+.+... ....+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeC
Confidence 46899999999999999999999999987631 112222222 1 244554432 11235689999886
Q ss_pred --CHHHHHHHHHhcCCeeccCCccC------CCCCceEEEEECCCCCeEEEeecc
Q 023245 232 --DVYKTAEAIKLSGGKITREPGPL------PGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 232 --d~~~~~~~l~~~g~~~~~~~~~~------~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|+++++++|+++|+++...|... ..++++.+||+|||||.||+++++
T Consensus 68 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 68 EEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 69999999999999987766433 123368999999999999999873
No 91
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=1.9e-15 Score=109.60 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.7
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc----ccccCCcceeEEEEeC
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT----EYDKGNGYAQIAIGTD 231 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~h~~~~v~ 231 (285)
+..|.|+|+++|++||+++|||++.... + .+ ..+..+.. ...+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~---~-~~--~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS---D-WY--VSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc---C-cE--EEEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 6789999999999999999999987641 1 12 22221111 2444443221111 0111223359999999
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
|+++++++|+++|+++..++...+.+ .+.++++||+|+.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999988887766654 688999999999999986
No 92
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=3.6e-15 Score=108.45 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=85.3
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC--CccCCCCCccEEEEEECCHH
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--DKYDIGTGFGHFGIAVEDVA 104 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~i~~~v~di~ 104 (285)
..|+|+|++++.+||+++||+++......+.+.+....+..++ . .+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 3588999999999999999999987765444444444455442 2 3444432111 01122345679999999999
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 105 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 105 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
++++++.+.|+++..++...+++.+ .++++||+|+.|++.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEec
Confidence 9999999999999988887777765 5899999999999986
No 93
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=2e-15 Score=110.97 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=84.6
Q ss_pred CceeEEEeecChHHHHHHHHHhc---CCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc--c-ccCCcceeE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE--Y-DKGNGYAQI 226 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~-~~~~~~~h~ 226 (285)
+|+||.|.|.|++++.+||+++| ||++..... ....+... .....+.+........ . ..+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~---~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE---DGRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec---cCceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999887631 12222222 1135556554333211 1 234678899
Q ss_pred EEEeC---CHHHHHHHHHhcCCeeccCCccC--CCCCceEEEEECCCCCeEEEee
Q 023245 227 AIGTD---DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 227 ~~~v~---d~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+|.|+ |+++++++|+++|+++...+... .....+.+|++|||||.|||+-
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99996 58899999999999988877642 2233688999999999999985
No 94
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.68 E-value=2.1e-15 Score=108.95 Aligned_cols=111 Identities=27% Similarity=0.443 Sum_probs=84.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
++|+|+.|.|+|++++++||+++|||++..... ...++..+. ..++.+.+.... ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 579999999999999999999999999876542 135565542 233444444321 246789999998
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 102 ---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 102 ---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++++++++++++|+++...+...++++. .++|.||+|+.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEc
Confidence 5899999999999998877665555544 58999999999999864
No 95
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=1.8e-15 Score=109.64 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=80.2
Q ss_pred EEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCC-----ccCCCCCccEEEEEE
Q 023245 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-----KYDIGTGFGHFGIAV 100 (285)
Q Consensus 26 hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~~~~~~~i~~~v 100 (285)
++.|.|+|++++++||+++|||+..... ..+ ..+..+. ....+.+....... ....+.+ .|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCC--CceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 5789999999999999999999987542 122 2333222 22445444322111 1112233 4899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 101 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 101 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+|+++++++++++|+++..+|...++|.+ .++++||+|++||++|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWGQR-HFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCcce-EEEEECCCCCEEEEEC
Confidence 99999999999999998888887777654 5899999999999985
No 96
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.68 E-value=7e-16 Score=110.52 Aligned_cols=113 Identities=28% Similarity=0.359 Sum_probs=81.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc-cCCCCCccEEEEEECC
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED 102 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~i~~~v~d 102 (285)
|+|++|.|+|++++.+||+++||++...+...+ ....++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999987543322 12345554432 2445554322211 1233467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
+++++++++++|+++..++.. .++.. .++|.||+|+.+|+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998876654 33443 58999999999985
No 97
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.68 E-value=1.2e-15 Score=110.92 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=80.1
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
..+|+|+.|.|+|+++|.+||+++|||++..+.. . .+++..........+.+.. ....++.|++|.|
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 4678999999999999999999999999876522 1 2223221211123444431 1235789999999
Q ss_pred C---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 231 D---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 231 ~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
+ |+++++++++++|+++...+....+ ++.+||+|||||.||++-..
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEec
Confidence 6 6788999999999987443322222 56789999999999998643
No 98
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=1.4e-15 Score=111.60 Aligned_cols=118 Identities=30% Similarity=0.496 Sum_probs=85.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCC-CCceEEEEeecCCCCCceEEEEEeccCC-Cc-----cCCCCCccEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDSHFVVELTYNYGV-DK-----YDIGTGFGHF 96 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~-----~~~~~~~~~i 96 (285)
|+||.|.|+|++++.+||+++|||+.......+ ......+++..+ ...+++.++... .. ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 589999999999999999999999997655432 233344556532 245666654321 11 1245678999
Q ss_pred EEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECC-C--CCeEEEEE
Q 023245 97 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDP-D--GYKFELLE 146 (285)
Q Consensus 97 ~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dP-d--G~~iel~~ 146 (285)
+|.|+|++++++++++.|+++..++.....++.. +++.|| + |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKR-VAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCE-EEEEecCCCceEEEEecC
Confidence 9999999999999999999998877644455554 555555 4 99999975
No 99
>PRK06724 hypothetical protein; Provisional
Probab=99.68 E-value=1.6e-15 Score=111.01 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCCceeEEEeecChHHHHHHHHHhc---CCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEE
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIA 227 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (285)
..+++||.|.|+|+++|++||+++| |++.........+ ...+.+...... .....+..|+|
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~~--~~~~~g~~h~a 68 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDEE--IVRTLGPRHIC 68 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCcc--ccCCCCceeEE
Confidence 4579999999999999999999966 6665321111111 122222111110 11234678999
Q ss_pred EEe---CCHHHHHHHHHhcCCeeccCCccCC--CCCceEEEEECCCCCeEEEeecc
Q 023245 228 IGT---DDVYKTAEAIKLSGGKITREPGPLP--GINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 228 ~~v---~d~~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|.| +|+++++++|+++|+++..+|...+ ..+.+.++|+|||||.||+....
T Consensus 69 f~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 69 YQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 998 7899999999999999887776543 23247889999999999997653
No 100
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.67 E-value=1.5e-15 Score=110.50 Aligned_cols=114 Identities=22% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
..++.|+.|.|+|++++++||+++|||++..... ... ++..........+.+.. ....+..|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRI--YLRGLEEFIHHSLVLTK-------APVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeE--EEEecCCCceEEEEEee-------CCCCceeEEEEEC
Confidence 3578999999999999999999999999876421 222 22211111123343321 1224788999998
Q ss_pred ---CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 231 ---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 231 ---~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
+|+++++++++++|+++...|.....+.++.+|++|||||.||++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 58888999999999998766443433335789999999999999864
No 101
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.67 E-value=2.4e-15 Score=112.63 Aligned_cols=113 Identities=24% Similarity=0.437 Sum_probs=82.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
.+|+||.|.|+|++++++||+++|||++..... . ...|+..+.. ...+.+... ..+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 479999999999999999999999999864421 1 2356655432 233444321 1246789999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 di~~~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
|++++. ++|+++|+++...+.....+....+||+||+|+.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 977775 89999999987665443333344589999999999999764
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=118.49 Aligned_cols=224 Identities=18% Similarity=0.228 Sum_probs=148.5
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCC--cc--CCCCCccE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KY--DIGTGFGH 95 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~--~~~~~~~~ 95 (285)
...++.+|-++|.|.+++..=|-..|||+...+--.. .+ ..| +-| ...+.++...... .+ .+|+++..
T Consensus 19 ~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v-~l~-rQG----dinlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 19 GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AV-TLY-RQG----DINLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ce-eEE-EeC----CEEEEEcCCCcchhhHHHHhcCCchhe
Confidence 3689999999999995555445566999976543211 11 222 222 2344444432221 11 47889999
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcc-----cC----CCCEEEEEEECCCC-C-eE--EEEEc----CCC---CCCce
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGP-----VK----GGNTVIAFIEDPDG-Y-KF--ELLER----GPT---PEPLC 155 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~-----~~----~~~~~~~~~~dPdG-~-~i--el~~~----~~~---~~~~~ 155 (285)
++|.|+|...+++++++.|++....+.. .| -|+ ...||.|.+| . .+ ++... .+. ...|+
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~gigg-sllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~ID 169 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGG-SLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAID 169 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCC-cEEEEeccCCCCcccccccccccccccccccCceeec
Confidence 9999999999999999999954433221 11 133 3588888873 1 11 11111 111 24789
Q ss_pred eEEEeec--ChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc-------cccCCcceeE
Q 023245 156 QVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-------YDKGNGYAQI 226 (285)
Q Consensus 156 hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~~h~ 226 (285)
|++..|. .++.+..||+++|||+.....+.++..--+.+-.....+...+|.|........ ...|.|++||
T Consensus 170 Hl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHI 249 (363)
T COG3185 170 HLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHI 249 (363)
T ss_pred hhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEE
Confidence 9999994 699999999999999999887665432222222222334457777765544332 2578899999
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccCCc
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITREPG 252 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~~~ 252 (285)
+|.++||-++.++|+++|+++...|.
T Consensus 250 A~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 250 AFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred EecccHHHHHHHHHHHcCCccCCCch
Confidence 99999999999999999999888763
No 103
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.67 E-value=2.3e-15 Score=109.31 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=81.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
.+|.||+|.|+|+++|.+||+++|||++..+.. . ...++..+. .++.+.+.... ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDD--RAWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccC--CceEEEEEeCC-------CCceeEEEEEEC
Confidence 368999999999999999999999999864421 1 134555432 34455554321 235679999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCccc--CCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 D---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 d---i~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+ +++++++|+++|+++...+... ..+....+||+|||||.||++..+
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 4 9999999999999987644321 223334689999999999998754
No 104
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=3.1e-15 Score=111.40 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=82.7
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECC--
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 102 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~d-- 102 (285)
.||.|.|+|++++.+||+++|||++..+.. . ..+|+.......+..+.+.. ....++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 499999999999999999999999876532 1 24666543322233333321 123579999999986
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 103 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 103 -i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+++++++|+++|+++...|...+.+..+.+||+||+|+.||+....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 5677999999999987777665544445689999999999998654
No 105
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.66 E-value=4.8e-15 Score=109.82 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=83.4
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCC
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 232 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d 232 (285)
+|+|+.|.|.|++++++||+++|||++...... .. +.++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765321 12 33333221 11345555433222111234578899999987
Q ss_pred HH---HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 233 VY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 233 ~~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
.+ +++++|.++|+++...+. .++ ++.++++||+||.|||+...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCC
Confidence 66 488999999998776542 222 578999999999999997665
No 106
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.66 E-value=3.6e-15 Score=106.78 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=79.8
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHH
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 236 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~ 236 (285)
..|.|+|++++++||+++|||++..... ...+ ..+..+ ...+.+........ ....+..|++|.++|++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHH
Confidence 3689999999999999999999877632 2222 333321 34455543332211 1345677999999999999
Q ss_pred HHHHHhcCCe-eccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 237 AEAIKLSGGK-ITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 237 ~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
.++++++|++ +..++...+++ .+.++++||+|+.|||+|
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 9999999998 56666555543 588999999999999986
No 107
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.66 E-value=1e-14 Score=108.06 Aligned_cols=120 Identities=26% Similarity=0.447 Sum_probs=83.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECC
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 102 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~d 102 (285)
+|+||+|.|+|++++++||+++|||++...... .. ..++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998755331 12 34554431 12334555543322111234567899999998
Q ss_pred HH---HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCC
Q 023245 103 VA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 150 (285)
Q Consensus 103 i~---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~ 150 (285)
++ +++++|.+.|+++...+. . +..+.++++||+|+.||++...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~--~-~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD--H-GNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC--C-CceeEEEEECCCCCEEEEEEcCCC
Confidence 55 588999999998775432 1 223468999999999999976543
No 108
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=4.2e-15 Score=108.70 Aligned_cols=117 Identities=24% Similarity=0.321 Sum_probs=84.2
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc-ccccCCcceeEEEEe
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-EYDKGNGYAQIAIGT 230 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~h~~~~v 230 (285)
.+|+||.|.|.|++++.+||+++|||++.... + . .+++..++ ....+.+...+... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 36899999999999999999999999998762 1 1 23333222 23556665433321 122345788999999
Q ss_pred C---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 231 D---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 231 ~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
. ++++++++|+++|+++..+ ...+. .+.+|++|||||.|||....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 6 5888999999999987543 33333 468999999999999987654
No 109
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.66 E-value=5.5e-15 Score=107.25 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=82.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 21 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 21 ~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
+.+|+|+.|.|+|++++++||+++|||+...... . ..++..+.. ....+.+... ..++..|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 3689999999999999999999999999864432 2 245543322 2233333221 123567999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCcc--cCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 101 E---DVAKTVDLVKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 101 ~---di~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+ +++++++++++.|+++..++.. .++++. .++|+||+|+.++++...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 4 6999999999999998776543 344444 689999999999998754
No 110
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=2.2e-15 Score=110.03 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.+|.|+.|.|+|+++|.+||+++|||++..+. + . ..++..+.. ...+.+... .++..|++|+|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~--~--~~~l~~~~~--~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERT--A--K--ATYFRSDAR--DHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCC--C--C--eEEEEcCCc--cEEEEEEeC--------CCceEEEEEEEC
Confidence 56899999999999999999999999986542 1 1 223332221 334444321 135679999997
Q ss_pred C---HHHHHHHHHhcCCeeccCCccCC--CCCceEEEEECCCCCeEEEeeccc
Q 023245 232 D---VYKTAEAIKLSGGKITREPGPLP--GINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 232 d---~~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
| +++++++|+++|+++..++.... .+..+++||+|||||.||+..+..
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 5 99999999999999876553211 222567899999999999987654
No 111
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.66 E-value=3.4e-15 Score=108.47 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=80.1
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC-
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 231 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~- 231 (285)
++.||+|.|+|+++|.+||+++|||++..+. .... .++..+. ....+.+... ...+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~~~--~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---EDGA--LYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CCCe--EEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 6899999999999999999999999986542 1122 2232222 1344555321 1246789999996
Q ss_pred --CHHHHHHHHHhcCCeeccCCccC--CCCCceEEEEECCCCCeEEEeecc
Q 023245 232 --DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 232 --d~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|+++++++|+++|+++...+.+. ..+.++.+||+|||||.||++-..
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58889999999999987654321 222257899999999999998654
No 112
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.65 E-value=5.6e-15 Score=105.90 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=79.1
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHH
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 235 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~ 235 (285)
...|.|+|++++++||+++|||+.... . + ...++.... .....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~---~--~-~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD---H--G-WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc---C--C-ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 346889999999999999999997642 1 1 222222211 1134445442211 12345799999999999
Q ss_pred HHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 236 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 236 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
++++|+++|+++..++...+++ .+.++++||+||.|+|+++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 9999999999998887666653 5789999999999999975
No 113
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=1.5e-15 Score=108.14 Aligned_cols=108 Identities=26% Similarity=0.338 Sum_probs=76.3
Q ss_pred EeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHHHH
Q 023245 159 LRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAE 238 (285)
Q Consensus 159 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~~~ 238 (285)
|.|+|+++|++||+++|||++....+ ....+... ..-......+..... ....+.+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988422 12222221 100011122222111 12345688999999999999999
Q ss_pred HHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 239 AIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 239 ~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
+++++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999998888776664 68999999999999986
No 114
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.65 E-value=4.5e-15 Score=107.79 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=76.4
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHH
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 235 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~ 235 (285)
...|.|+|+++|++||++ |||++..+.+ . . ++.+..+ ...+.|...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA--A-G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC--C-C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 467899999999999999 9999876532 1 2 3333322 245555433211 122334689999999999
Q ss_pred HHHHHHhcCCeec-------cCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 236 TAEAIKLSGGKIT-------REPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 236 ~~~~l~~~g~~~~-------~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
++++|+++|+++. ..+...+++ .+.++++|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 9999999999843 233333443 6889999999999999884
No 115
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=6.6e-15 Score=107.37 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=79.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHc---cCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTEC---LGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
|+||+|.|+|+++|++||+++ ||++..... ...+ +.+..+. ....+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~~--~~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPGA--VGYGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCce--eEeccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 699886443 1111 2232221 1234444433221111 122346999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCC--CCEEEEEEECCCCCeEEEE
Q 023245 101 ED---VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 101 ~d---i~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~dPdG~~iel~ 145 (285)
+| +++++++++++|+++..+|...++ .+.+.+||+|||||.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 788999999999998877766654 3444689999999999997
No 116
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=2.9e-15 Score=106.61 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=75.7
Q ss_pred EEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHHHH
Q 023245 29 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 108 (285)
Q Consensus 29 i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~~~ 108 (285)
|.|+|++++++||+++|||++..... .+ ..+..+.........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987322 12 222222110001122222221 12234567899999999999999
Q ss_pred HHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 109 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 109 ~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
+++++|+++..+|...+++.. .++++||||+.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999999888888877654 699999999999986
No 117
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.64 E-value=6.6e-15 Score=106.28 Aligned_cols=112 Identities=22% Similarity=0.348 Sum_probs=83.2
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.+++|+.|.|.|++++++||+++|||++..... ...+ +..+. .....+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVY--LRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEE--EecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 368999999999999999999999999887531 1222 22221 11334444321 1246789999997
Q ss_pred ---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 232 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 232 ---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
++++++++|+++|+++...+...+++ ++.++++||+||.||++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEcc
Confidence 68889999999999988877544443 68899999999999998654
No 118
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=6e-15 Score=105.89 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=76.7
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe--CCH
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT--DDV 233 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v--~d~ 233 (285)
|+.|.|+|++++++||+++|||++..... . ..++... ...+.+....... ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~---~-~~~~~~~------~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS---K-EAYFELA------GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC---c-eeEEEec------CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 79999999999999999999999876531 1 1122221 2344443322211 1235678999999 579
Q ss_pred HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 234 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 234 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
++++++++++|+++...+..... .++.+|++||||+.|||+..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 99999999999997654322222 25789999999999999854
No 119
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=6.5e-15 Score=105.68 Aligned_cols=109 Identities=24% Similarity=0.409 Sum_probs=77.1
Q ss_pred EEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC--CH
Q 023245 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE--DV 103 (285)
Q Consensus 26 hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~--di 103 (285)
||.|.|+|++++++||+++|||+...+.+ . ..++..+. ..+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865432 1 23344321 344443322211 12345689999995 69
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 104 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 104 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++++++++++|+++...+.....++ +.+|++||||+.||+...
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEG-RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCc-eEEEEECCCCCEEEEEeC
Confidence 9999999999999765433333333 469999999999999864
No 120
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.63 E-value=2e-14 Score=103.01 Aligned_cols=108 Identities=22% Similarity=0.296 Sum_probs=78.6
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHH
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 106 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~ 106 (285)
..|.|+|++++++||+++|||+.... .+ + ..++..+. .....+.+...... +....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQ-NMTVQVSLATEGGT-----ATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecC-CCCcEEEEecCCCC-----CCCCCEEEEEeCCHHHH
Confidence 46899999999999999999998632 11 1 22332222 12334444432111 22346899999999999
Q ss_pred HHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 107 VDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 107 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++++++.|+++..++...++|.+ .++++||+||.|++++.
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWGVR-RFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCceE-EEEEECCCCCEEEEEEc
Confidence 99999999998888777776654 58999999999999975
No 121
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.7e-14 Score=105.25 Aligned_cols=114 Identities=24% Similarity=0.268 Sum_probs=78.6
Q ss_pred ceeEEEeecChHHHHHHHHHh---cCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 154 LCQVMLRVGDLDRAINFYKKA---FGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
++|+.|.|+|+++|++||+++ ||++..... .+ . .+. ..... ....+.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~-~~~-~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G-AVG-YGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c-eeE-eccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999998 699876542 11 1 222 22111 134444433222111 1223457999999
Q ss_pred CC---HHHHHHHHHhcCCeeccCCccCCC--CCceEEEEECCCCCeEEEe
Q 023245 231 DD---VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFV 275 (285)
Q Consensus 231 ~d---~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~DPdG~~iei~ 275 (285)
+| ++++++++.++|+++..+|...++ ...+.+|++|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 778899999999998877766553 2245789999999999996
No 122
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=1.4e-14 Score=105.35 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=78.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE--
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV-- 100 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v-- 100 (285)
+|+||.|.|+|++++.+||+++|||++....+ . ..++..+. . .+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~--~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--L--WLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--E--EEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999865432 1 23444332 2 2233221111 1234678999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 101 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 101 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+|+++++++++++|+++..++.. .+ ..+||+|||||.||+....
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~---~~-~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS---EG-DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC---Cc-cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 12 3699999999999999764
No 123
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.62 E-value=1.7e-14 Score=104.97 Aligned_cols=113 Identities=18% Similarity=0.225 Sum_probs=76.1
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc----cc-ccCCcceeEEE
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT----EY-DKGNGYAQIAI 228 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~-~~~~~~~h~~~ 228 (285)
++||+|.|+|+++|++||+. |||++...... ..+ +.+..++ ...+.+....... .. ..+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99997643221 111 1122111 1223222111000 00 12334568888
Q ss_pred EeC---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 229 GTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 229 ~v~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
.+. |+++++++|+++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 764 89999999999999988888767664 57899999999999996
No 124
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=2.3e-14 Score=104.19 Aligned_cols=113 Identities=30% Similarity=0.435 Sum_probs=79.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCC------ccCCCCCccEEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD------KYDIGTGFGHFG 97 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~~i~ 97 (285)
|.||.|.|.|++++++||+++|||++.... .+. ..++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 578999999999999999999999987541 222 244554432 233333322111 111234678999
Q ss_pred EEE--CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 98 IAV--EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 98 ~~v--~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
|.+ +|++++++++.++|+++...+. ..+++. .++|+||+|++||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~-~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGR-SLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCee-EEEEECCCCCEEEEec
Confidence 998 4799999999999998776544 334444 5999999999999985
No 125
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.6e-14 Score=105.05 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=79.2
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc------ccccCCcceeEE
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT------EYDKGNGYAQIA 227 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~h~~ 227 (285)
+.++.|.|.|++++.+||+++|||++..+ ++..+ ..+..+.. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998764 22222 22332221 223332221110 011235778999
Q ss_pred EEe--CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 228 IGT--DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 228 ~~v--~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
|.+ +|++++++++.++|+++...+. ... .++.++++||+|+.||++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 998 5899999999999998866553 232 36889999999999999863
No 126
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.9e-14 Score=103.51 Aligned_cols=108 Identities=28% Similarity=0.354 Sum_probs=78.0
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc-cccCCcceeEEEEeCC---
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD--- 232 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d--- 232 (285)
+.|.|.|+++|++||+++|||++.... ..+..+... + ...+.+........ .....+.+|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999977542 123332221 1 23444443322211 1123467899999975
Q ss_pred HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 233 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
++++++++.++|+++..+|...++ ++.++|+|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 888999999999999988877766 46789999999999996
No 127
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.61 E-value=1.9e-14 Score=104.77 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=77.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEecc-----CCCccCCCCCccEEEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY-----GVDKYDIGTGFGHFGI 98 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~~~~~i~~ 98 (285)
++||+|.|+|+++|++||+. |||++..... ... .+.+..+. + ..+.+.... .......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~--~~~--~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEAD--DEP--HVEAVLPG-G--VRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcC--CCC--cEEEEeCC-C--EEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 9999764322 111 12233321 1 223322211 0001112234457888
Q ss_pred EEC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 99 AVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 99 ~v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
.+. |+++++++|+++|+++..+|...++|.+ .++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQR-YAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCE-EEEEECCCCCEEEEe
Confidence 775 7999999999999998888888888765 589999999999986
No 128
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.61 E-value=2.4e-14 Score=102.75 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=77.7
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.++.|+.|.|.|+++|.+||++ |||++..+. +. . + ++..+.. ...+.+... ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~-~-~-~~~~~~~--~~~~~~~~~------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD-E-L-YYRGYGT--DPFVYVARK------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC-e-E-EEecCCC--ccEEEEccc------CCcCcccEEEEEEC
Confidence 4689999999999999999999 999987652 11 1 2 2322111 122222111 11257789999999
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
|.+++.+.+++.|+.+...+. .+.+ ++.++|+|||||.|||+-.
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 999999999999998765442 3433 5789999999999999754
No 129
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=1.8e-14 Score=104.81 Aligned_cols=108 Identities=25% Similarity=0.364 Sum_probs=77.6
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe--
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT-- 230 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v-- 230 (285)
+|.|+.|.|+|++++.+||+++|||++....+ + ..+ +..+ ...+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~~~--~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--GAY--LEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--ceE--EecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 57899999999999999999999999865422 1 112 2211 123333221111 1235678999998
Q ss_pred CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 231 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 231 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
+|+++++++|+++|+++...+.. . ++.+||+|||||.|||+..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeC
Confidence 68999999999999997665432 2 3689999999999999864
No 130
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.61 E-value=3.2e-14 Score=101.24 Aligned_cols=120 Identities=26% Similarity=0.346 Sum_probs=90.3
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (285)
...+.|..|.+.|+++|++||.++|||+........+..+..+..+ .......+.-. ....++...+++-|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~--~~~~gG~l~~~-----~~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPAD--GAGAGGGLMAR-----PGSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECC--CccccceeccC-----CcCCCCCCCEEEEEec
Confidence 4678999999999999999999999999988744333444333332 21111211111 0122336778999999
Q ss_pred CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 231 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 231 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
+|+++..+|..++|.+++.++.+.+++ ++.+.+.||+||.|.|++..
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999888864 79999999999999998753
No 131
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=3.2e-14 Score=120.12 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=83.5
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCce-EEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEE
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 97 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~ 97 (285)
+.+++|+||+|.|+|++++++||+++|||++......+.+.. ...|+..+... ..+.+... .....+.|+|
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~g~~~Hia 212 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKA--HDIAFVGD------PEPGKLHHVS 212 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCC--cccceecC------CCCCceEEEE
Confidence 457899999999999999999999999999876544333322 34455433211 11222111 1112378999
Q ss_pred EEECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 98 IAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 98 ~~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
|.|+| +++++++|+++|+++...|.....+....+||+||+|++||+..
T Consensus 213 f~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 213 FFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99997 55678899999999876665444333346999999999999983
No 132
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.7e-14 Score=105.43 Aligned_cols=112 Identities=23% Similarity=0.218 Sum_probs=76.8
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc------c-ccCCcceeEE
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE------Y-DKGNGYAQIA 227 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~-~~~~~~~h~~ 227 (285)
.++.|.|.|+++|++||++ |||++......+ ....+.. ++ ...+.+........ . ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~--~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVI--SD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEE--CC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5789999999999999987 999976432211 1222212 11 23444433211100 0 1234567999
Q ss_pred EEeC---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 228 IGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 228 ~~v~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
|.|+ |+++++++++++|+++..+|...++ .+.+||+|||||.|||+-
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 9997 5888999999999999888766664 467899999999999973
No 133
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.61 E-value=1.8e-14 Score=102.47 Aligned_cols=112 Identities=30% Similarity=0.426 Sum_probs=83.5
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHH
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 235 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~ 235 (285)
|+++.|.|++++++||+++|||++...... .......+..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 789999999999999999999998877432 11234444422 356666654333211235678999999999999
Q ss_pred HHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEE
Q 023245 236 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 274 (285)
Q Consensus 236 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei 274 (285)
++++|.++|+.+..++.. ...+.+.++++||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 999999999998877652 22336899999999999986
No 134
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.60 E-value=2.6e-14 Score=103.69 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=81.5
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEe-
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT- 230 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v- 230 (285)
.+|.|+.|.|+|++++.+||+++|||+..... . ++.+ +.... .....+.+.. ...++..|++|.+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~--~--~~~~--~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAED--D--GIVY--LRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEec--C--CEEE--EECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 47899999999999999999999999986542 1 2332 22111 1123333321 1124678999999
Q ss_pred --CCHHHHHHHHHhcCCeeccCCccC-CCCCceEEEEECCCCCeEEEeeccc
Q 023245 231 --DDVYKTAEAIKLSGGKITREPGPL-PGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 231 --~d~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+++++++++|+++|+++..++... ..++++.++|+||+||.|||+....
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 578999999999999987766432 1223678999999999999987653
No 135
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.60 E-value=2.6e-14 Score=104.40 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=73.2
Q ss_pred EEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC---C-c-cCCCCCccEE--EE
Q 023245 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---D-K-YDIGTGFGHF--GI 98 (285)
Q Consensus 26 hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~-~-~~~~~~~~~i--~~ 98 (285)
||+|.|+|+++|++||+++|||++..... .+ ..+..+ +..+.+.+...... . . .....+..|+ ++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999864321 11 122221 22233333321110 0 0 0111234455 55
Q ss_pred EECCHHHHHHHHHHcCCeeecCCcccCC---CCEEEEEEECCCCCeEEEEE
Q 023245 99 AVEDVAKTVDLVKAKGGKVTREPGPVKG---GNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 99 ~v~di~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~dPdG~~iel~~ 146 (285)
.++|+++++++|+++|+++..+|..... +..+.+||+|||||.||+..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6789999999999999998876654221 22346999999999999874
No 136
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.60 E-value=4.8e-14 Score=100.21 Aligned_cols=112 Identities=33% Similarity=0.443 Sum_probs=83.0
Q ss_pred EEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHH
Q 023245 26 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 105 (285)
Q Consensus 26 hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~ 105 (285)
|++|.|+|++++.+||+++||++....... ......++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998876542 12234445433 245666654332221234567899999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 106 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 106 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
++++|+++|+.+..++....++. ..+++.||+|+.|++
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGG-RVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCc-EEEEEECCCCcEEeC
Confidence 99999999998887765333344 469999999999985
No 137
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.60 E-value=4.6e-14 Score=102.42 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=77.6
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCC--
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 232 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d-- 232 (285)
.|+.|.|+|+++|.+||+++||++..... + . ...+... . ....+.+...... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~--~-~-~~~~~~~--~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR--D-D-YAKFLLE--D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc--C-C-eeEEEec--C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 59999999999999999999999876542 1 1 1111111 1 1233333221111 11578899999987
Q ss_pred -HHHHHHHHHhcCCeeccCCccCC-CCCceEEEEECCCCCeEEEeec
Q 023245 233 -VYKTAEAIKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 233 -~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~DPdG~~iei~~~ 277 (285)
+++++++|+++|+++...+.... ++..+.+|++||+||.|||+..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 78899999999999877654332 2225789999999999999974
No 138
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.60 E-value=5e-14 Score=100.97 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=74.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccE--EEEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH--FGIA 99 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~--i~~~ 99 (285)
.+|+||+|.|+|++++++||+ +|||++..+.. . ..+...+ .....+.+.... ..++.+ +.+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~-~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----G-LELRTAG--NDHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----c-eEEEecC--CCceEEEeecCC-------CCceeeEEEEeE
Confidence 368999999999999999997 69999864421 1 1222222 123344443321 122334 4555
Q ss_pred ECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 100 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 100 v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
++|+++++++++++|+++...+ .+++.. .+||.||+||.|||...+
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 6899999999999999987654 333333 589999999999998654
No 139
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.59 E-value=4.7e-14 Score=102.39 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=75.2
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHH
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 106 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~ 106 (285)
..|.|+|+++|++||++ |||+...+.. . .+ +++..+. ..+.+....... ......+++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~~--~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A-GY--MILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCC--C-CE--EEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHHH
Confidence 56899999999999999 9999875432 1 22 3343321 245555432111 112335789999999999
Q ss_pred HHHHHHcCCee-------ecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 107 VDLVKAKGGKV-------TREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 107 ~~~l~~~g~~~-------~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
+++|+++|+++ ..++...+++.+ .++|+|||||.|+|+|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWGMR-EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCcee-EEEEECCCCCEEEeecC
Confidence 99999999974 234455556655 59999999999999874
No 140
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.59 E-value=2.4e-14 Score=104.58 Aligned_cols=113 Identities=18% Similarity=0.178 Sum_probs=73.3
Q ss_pred eEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc----c-cccCCcceeEE--E
Q 023245 156 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT----E-YDKGNGYAQIA--I 228 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~-~~~~~~~~h~~--~ 228 (285)
||.|.|+|+++|++||+++|||++..... . +..+...+ ....+.+....... . .....+..|++ |
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--cccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999865321 1 11122111 11222222111000 0 01112445654 5
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCC---CCCceEEEEECCCCCeEEEee
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLP---GINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~DPdG~~iei~~ 276 (285)
.++|+++++++|+++|+++..+|.... .+..+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 679999999999999999887765321 123588999999999999963
No 141
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.59 E-value=6.8e-14 Score=100.10 Aligned_cols=109 Identities=29% Similarity=0.381 Sum_probs=78.9
Q ss_pred EEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHHH
Q 023245 28 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 107 (285)
Q Consensus 28 ~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~~ 107 (285)
.|.|+|++++++||+++|||++..... ...+ .++..+ ...+.+......... ...+..|++|.|+|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 588999999999999999999876543 2222 334332 234555443322111 2345568999999999999
Q ss_pred HHHHHcCCe-eecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 108 DLVKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 108 ~~l~~~g~~-~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+++++.|++ +..++...+++.. .++++||+|+.|+++|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 999999998 6666666666654 5889999999999975
No 142
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.59 E-value=6.4e-14 Score=117.82 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=83.9
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
.+++|+||+|.|+|++++++||+++|||++......+.+.....|+..+.. ...+.+... .++++.|+||.
T Consensus 133 ~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~Hiaf~ 203 (294)
T TIGR02295 133 SPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTNG-------NGPRLHHIAYW 203 (294)
T ss_pred cceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeecC-------CCCceeeEEEE
Confidence 578999999999999999999999999998765433333333445433221 122333211 23578999999
Q ss_pred ECC---HHHHHHHHHHcCCe--eecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 100 VED---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 100 v~d---i~~~~~~l~~~g~~--~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
|+| ++++.++|+++|++ +...|.....+....+|++||+|+.||++...
T Consensus 204 v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 204 VHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred cCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 998 55678899999987 44444433333344689999999999998753
No 143
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.58 E-value=5.5e-14 Score=100.73 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.+|+||.|.|.|++++.+||+ .|||++.... + .. .+ ...+. ....+.+.... ..+....++++.++
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~~-~~-~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~ 66 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-GL-EL-RTAGN--DHRWARLLEGA-----RKRLAYLSFGIFED 66 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-ce-EE-EecCC--CceEEEeecCC-----CCceeeEEEEeEhh
Confidence 368999999999999999997 6999986542 1 11 21 22111 12333333211 11122334555679
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
|+++++++|+++|+++..++ .+. ..+.+||+||+||.|||....
T Consensus 67 d~~~~~~~l~~~Gi~~~~~~--~~~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 67 DFAAFARHLEAAGVALAAAP--PGA-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hHHHHHHHHHHcCCceecCC--CcC-CCCEEEEECCCCCEEEEecCC
Confidence 99999999999999987655 222 245799999999999998543
No 144
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=8.9e-14 Score=100.93 Aligned_cols=112 Identities=28% Similarity=0.466 Sum_probs=77.8
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECC--
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 102 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~d-- 102 (285)
.|+.|.|+|++++.+||+++||++...... .+ ..|. .+. ....+.+...... ..++..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~-~~~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFL-LED--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEE-ecC--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998764421 11 2222 222 2233433332211 11467899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCC-CCEEEEEEECCCCCeEEEEEcC
Q 023245 103 -VAKTVDLVKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 103 -i~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~dPdG~~iel~~~~ 148 (285)
++++++++.++|+++...+..... +..+.+|++||+|+.|||++..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 888999999999998766543322 2234699999999999999753
No 145
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=97.60 Aligned_cols=121 Identities=28% Similarity=0.363 Sum_probs=86.1
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 99 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~ 99 (285)
+...+.|.-|+|.|++++++||+++|||+.....+.....+ ..+..+.......+.- .. ....+.....+.|.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~~gG~l~~--~~---~~~p~~~~~~iy~~ 78 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAGAGGGLMA--RP---GSPPGGGGWVIYFA 78 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCccccceecc--CC---cCCCCCCCEEEEEe
Confidence 44556777799999999999999999999876644322333 2222211111111211 11 11112445678999
Q ss_pred ECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 100 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 100 v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
|+|+++..+|+.+.|.+++.++.+.+++++ .+.|.||.||+|.|++..
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~-~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGR-IAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceE-EEEEECCCCCEEEEeecC
Confidence 999999999999999999999999997665 599999999999999753
No 146
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=5.3e-14 Score=102.77 Aligned_cols=112 Identities=23% Similarity=0.211 Sum_probs=76.6
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC------Ccc-CCCCCccEEE
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV------DKY-DIGTGFGHFG 97 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~-~~~~~~~~i~ 97 (285)
.+|.|.|+|+++|++||++ |||+....... ... .++..+. ...+.+...... ... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~--~~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSD--EKA--ACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCC--CCe--EEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5789999999999999987 99997643322 111 2232321 134444432110 000 1233456899
Q ss_pred EEEC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 98 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 98 ~~v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
|.|+ ++++++++++++|+++..+|...+++ +.+||+|||||+||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~--~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGFM--YGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCce--EEEEEECCCCCEEEEEE
Confidence 9998 58899999999999998887776643 35899999999999974
No 147
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.2e-13 Score=99.31 Aligned_cols=108 Identities=26% Similarity=0.349 Sum_probs=78.3
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc-cCCCCCccEEEEEECC---
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED--- 102 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~i~~~v~d--- 102 (285)
+.|.|+|+++|++||+++||+++.... ..+ ..+..+. ...+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTF--ALFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cce--EEEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 579999999999999999999976432 223 2232221 13455554332211 1123456899999986
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
++++++++.++|+++..+|...+++. .++|+|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999998888877764 489999999999986
No 148
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.56 E-value=1e-13 Score=116.12 Aligned_cols=118 Identities=25% Similarity=0.410 Sum_probs=83.2
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCC---ceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEE
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED---RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 96 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i 96 (285)
...+|+||+|.|+|++++.+||+++|||++......+.. .+..+++..+.. +..+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEE
Confidence 357999999999999999999999999998655322211 123456655432 223333221 124578899
Q ss_pred EEEECCHHH---HHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 97 GIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 97 ~~~v~di~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+|.|+|+++ ++++|+++|+ ....+...+.++...+|++||+|++||+..
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 999998666 8999999999 444444443344456999999999999985
No 149
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=1.1e-13 Score=99.37 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=72.0
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHH
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 236 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~ 236 (285)
..|.|+|+++|++||++ |||++.... .. +.++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~--~~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DN--LAYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CC--EEEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 46889999999999988 999998753 12 3334432 233333221111 112346899999999999
Q ss_pred HHHHHhcCCeecc-----CCccCCCCCceEEEEECCCCCeEEEee
Q 023245 237 AEAIKLSGGKITR-----EPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 237 ~~~l~~~g~~~~~-----~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+++|+++|+++.. .+...+.+ .+.++|+|||||+|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 9999999987532 23333443 689999999999999865
No 150
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=2e-13 Score=99.03 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=75.5
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCC------CcccccCCcceeEEEEe
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG------VTEYDKGNGYAQIAIGT 230 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~------~~~~~~~~~~~h~~~~v 230 (285)
|.|.|.|+++|.+||+++|||++..+ +...+. ++..+ ...+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~---~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD---SNDGVA--FFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc---CCCceE--EEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 68999999999999999999998765 122222 23321 24444433211 00111222344566654
Q ss_pred ---CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 231 ---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 231 ---~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+|++++++++++.|+++..++...+++ ++.++++||+||.|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 689999999999999998877666554 788999999999999975
No 151
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.54 E-value=1e-13 Score=98.73 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=76.4
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCcc--CCCCCccEEEEEECC
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY--DIGTGFGHFGIAVED 102 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~i~~~v~d 102 (285)
+||+|.|+|+++|++||+++||++.......+..+....++..+... ..++|+++....+. ..+.+++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987766666666777777665422 67888886554332 367799999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 023245 103 VAKTVDLVKAKGGKVTREP 121 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~ 121 (285)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987653
No 152
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.5e-13 Score=98.56 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=71.7
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHHHH
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 106 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~~~ 106 (285)
..|.|+|+++|++||++ |||++..+. .. .+++..+. . .+.+...... . .....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~--~~~l~~~~--~--~l~l~~~~~~-~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DN--LAYFRLGN--C--AFYLQDYYVK-D---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CC--EEEEEcCC--E--EEEeecCCCc-c---cccCCEEEEEECCHHHH
Confidence 35889999999999987 999997653 22 24454432 2 2333321111 1 11235789999999999
Q ss_pred HHHHHHcCCeee-----cCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 107 VDLVKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 107 ~~~l~~~g~~~~-----~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+++|+++|+++. .++...++|.+ .++|+|||||+|++.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 999999998642 23444456654 6999999999999864
No 153
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.52 E-value=7.6e-14 Score=99.46 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=76.4
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc--cccCCcceeEEEEeCC
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIGTDD 232 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~v~d 232 (285)
+||++.|+|+++|++||+++||+........+..+.+..++..+.. ...++|+++..... ...+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999999999999999998776655666667766665432 27888887665542 2467899999999999
Q ss_pred HHHHHHHHHhcCCeeccCC
Q 023245 233 VYKTAEAIKLSGGKITREP 251 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~ 251 (285)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987764
No 154
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3e-13 Score=97.51 Aligned_cols=133 Identities=25% Similarity=0.282 Sum_probs=94.4
Q ss_pred EEEEECCCCCeEEEEEcCCCCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceE-EEEeeeCCCCceeEEEec
Q 023245 131 IAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYT-IAVMGYGPEDKNAVLELT 209 (285)
Q Consensus 131 ~~~~~dPdG~~iel~~~~~~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~ 209 (285)
...+.||.+-+.- -.++.|..+.+.+..+...||...||++.....+.+..+.. ++... ...++|+
T Consensus 27 ~~rvkd~~~Sl~f-------ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~------~~~~ELt 93 (170)
T KOG2944|consen 27 MLRVKDPTGSLKF-------YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSR------NAKLELT 93 (170)
T ss_pred eeecccchhhhhh-------hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecc------cCceeee
Confidence 3455666553322 25678888888888888899988899887776665544432 33222 4677887
Q ss_pred ccCCCcc-----cccC----CcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeecc
Q 023245 210 YNHGVTE-----YDKG----NGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 278 (285)
Q Consensus 210 ~~~~~~~-----~~~~----~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 278 (285)
++-+... +.+| .|+.||||.|+|++++..+|+++|+++...+.+-.. ...+|+.||||++|||..+.
T Consensus 94 hn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 94 HNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred cCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeecC
Confidence 7654431 2222 389999999999999999999999997765543211 35799999999999998653
No 155
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.7e-13 Score=105.34 Aligned_cols=121 Identities=37% Similarity=0.717 Sum_probs=104.2
Q ss_pred CCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCC-----------CceEEEEeeeCCCCceeEEEecccCCCcccc
Q 023245 150 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYD 218 (285)
Q Consensus 150 ~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 218 (285)
...+.-|+++.|.|..+.++||+++||+++....++++ ++|+-.++++++++.++.++|+++-+...|.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34678899999999999999999999999999887775 6788889999999999999999999998899
Q ss_pred cCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 219 KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 219 ~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
-|+++.|+.+.++|+-...+++...|.+ +++.-.++++||||..+++.++.+
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCC
Confidence 9999999999999988888887766541 112447899999999999998554
No 156
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=5.6e-13 Score=96.70 Aligned_cols=110 Identities=26% Similarity=0.347 Sum_probs=75.9
Q ss_pred EEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccC------CCccCCCCCccEEEEEE
Q 023245 27 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG------VDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 27 v~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~------~~~~~~~~~~~~i~~~v 100 (285)
|.|.|+|++++.+||+++|||++.... ... ..++..+ + ..+.+..... .+....+.+..+++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~--~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDG--VAFFQLG--G--LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCc--eEEEEcC--C--eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999986551 122 2344432 1 3454443211 11111222334466655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 101 ---EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 101 ---~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+|++++++++++.|+++..++...++++. .++++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGY-SGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCce-EEEEECCCCCEEEEee
Confidence 57999999999999999888777777654 5999999999999975
No 157
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=3.6e-12 Score=92.05 Aligned_cols=54 Identities=39% Similarity=0.734 Sum_probs=44.6
Q ss_pred CCccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCE-EEEEEECCCCCeEEEEEc
Q 023245 91 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNT-VIAFIEDPDGYKFELLER 147 (285)
Q Consensus 91 ~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~dPdG~~iel~~~ 147 (285)
.|.+||||.|+|+++++++++++|++.... ..+|.. .++|+.||||+.|||...
T Consensus 114 rGfgHIci~V~di~sac~~lkekGV~f~Kk---~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKEKGVRFKKK---LKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHHhCceeeec---CCCccccceeEEECCCCCeEEEeec
Confidence 489999999999999999999999996533 333333 578999999999999754
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.37 E-value=6.3e-12 Score=98.44 Aligned_cols=98 Identities=26% Similarity=0.388 Sum_probs=74.9
Q ss_pred CCceeEEEeec--ChHHHHHHHHHhcCCeeeeeecCCC--CceEEEEeeeCCCCceeEEEecccCCC--c-------ccc
Q 023245 152 EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKYTIAVMGYGPEDKNAVLELTYNHGV--T-------EYD 218 (285)
Q Consensus 152 ~~~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~~ 218 (285)
.+++||++.|. |++++++||+++|||+.......++ .+.+...+.. +.....++|..+... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~--~~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS--PDGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC--CCCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 46899999999 9999999999999999887755433 3344444442 223567777765441 1 123
Q ss_pred cCCcceeEEEEeCCHHHHHHHHHhcCCeeccCC
Q 023245 219 KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREP 251 (285)
Q Consensus 219 ~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~ 251 (285)
.|.|++|+||.|+|+++++++|+++|+++...|
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 578999999999999999999999999998776
No 159
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.35 E-value=2e-11 Score=96.66 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=87.1
Q ss_pred CCCCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCC-cccccCCcceeEE
Q 023245 149 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-TEYDKGNGYAQIA 227 (285)
Q Consensus 149 ~~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~ 227 (285)
.++..+..+.|.|+|++.++.||++++|+++..+.. +.+.+..++ .+.|.|.+.+.. .......|..|+|
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeee
Confidence 346778999999999999999999999999988743 223333332 355666553332 2234568999999
Q ss_pred EEeCC---HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 228 IGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 228 ~~v~d---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
|.+++ +.....++.+.|+.+. +..++.. .-.+||.||+||-||++...+
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 99975 5556777888887765 4455555 457999999999999998855
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=82.88 Aligned_cols=115 Identities=20% Similarity=0.221 Sum_probs=77.9
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc----cccC--CcceeE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE----YDKG--NGYAQI 226 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~--~~~~h~ 226 (285)
.+.|+++.|+|++++.+||.++||++...+.+ .|+.+..-+. .....+........ ...+ ....-+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyGH--Q~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYGH--QVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeeccc--EEEEEecCCcccccCcccCCCCCCCccceE
Confidence 46899999999999999999999999877643 2333322221 12222221111100 0111 234456
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccCCccC---CCCCceEEEEECCCCCeEEEe
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITREPGPL---PGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~DPdG~~iei~ 275 (285)
.|.++|..++.++|+++|+.+..+|.-. ..+..+.+++.||.||.+|+-
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK 127 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFK 127 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeee
Confidence 7788999999999999999988887532 122368899999999999984
No 161
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.34 E-value=1.5e-11 Score=96.28 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=74.5
Q ss_pred cceeeEEEEEeC--CHHHHHHHHHHccCCEEeeEeeCCC--CceEEEEeecCCCCCceEEEEEeccCC--Cc-------c
Q 023245 21 KRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV--DK-------Y 87 (285)
Q Consensus 21 ~~~i~hv~i~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~-------~ 87 (285)
+.+|+||++.|+ |++++.+||+++|||+.......++ .......+... ...+.+++..+... .+ .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHH
Confidence 367999999999 9999999999999999887655433 22333344332 34466777654331 11 1
Q ss_pred CCCCCccEEEEEECCHHHHHHHHHHcCCeeecCCccc
Q 023245 88 DIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPV 124 (285)
Q Consensus 88 ~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~ 124 (285)
..+.|+.|+||.|+|+++++++|+++|+++...|...
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y 115 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY 115 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence 2467999999999999999999999999987665433
No 162
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=79.12 Aligned_cols=118 Identities=25% Similarity=0.262 Sum_probs=76.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc-cC-----CCCCccE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YD-----IGTGFGH 95 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~-----~~~~~~~ 95 (285)
.-+=|.+|.|+|++++++||.++||++...+.+ .|+...-.+..+...+....+... -. .......
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 346699999999999999999999999765433 112111112223344433221111 01 1112234
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCC---CCEEEEEEECCCCCeEEEEEc
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKG---GNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~dPdG~~iel~~~ 147 (285)
+.+.++|.-++.+||++.|+....+|.-... |..+.+++.||.||.+|+---
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 6778889999999999999987777764332 223358899999999998643
No 163
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.21 E-value=1.1e-09 Score=80.38 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=75.1
Q ss_pred EEEe-CCHHHHHHHHHHccCCEEeeEeeC----------CCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEE
Q 023245 28 VYRV-GDLDKTIKFYTECLGMKLLRKRDI----------PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 96 (285)
Q Consensus 28 ~i~v-~d~~~a~~FY~~~lG~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i 96 (285)
.|.+ .|.++|++||+++||+++...... ..+.+.++.+.++.. .+.+......... .+....++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCC-CCCCCEEE
Confidence 4667 899999999999999998876532 123334455555431 2333322111111 12234578
Q ss_pred EEEECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 97 GIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 97 ~~~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
++.|+| +++++++|++.| ++..++...+++.+ .++++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~-~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPL-FGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccc-cEEEECCCCCEEEe
Confidence 999886 778889987666 88888888888876 48999999999987
No 164
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.19 E-value=2.6e-09 Score=77.52 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=87.7
Q ss_pred EEEeC-CHHHHHHHHHHccCCEEeeEeeCCC----------CceEEEEeecCCCCCceEEEEEeccCCCccCC-CCCccE
Q 023245 28 VYRVG-DLDKTIKFYTECLGMKLLRKRDIPE----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI-GTGFGH 95 (285)
Q Consensus 28 ~i~v~-d~~~a~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~~ 95 (285)
-|.++ |.++|++||+++||.+.......++ +...++.+.++.. .|.+........... ++.-..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeEE
Confidence 36788 9999999999999999888776666 5666777776632 233322211111122 223456
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
|.+.++|++++++++.+.|+++..++....||.+ ...++||.|+.|.|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r-~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDR-YGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcccc-eEEEECCCCCEEEEecCcc
Confidence 7888889999999999999999999999999987 4889999999999986543
No 165
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.18 E-value=1.2e-09 Score=80.05 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=73.8
Q ss_pred EEEee-cChHHHHHHHHHhcCCeeeeeecCCC----------CceEEEEeeeCCCCceeEEEecccCCCcccccCCccee
Q 023245 157 VMLRV-GDLDRAINFYKKAFGMELLRKRDNPD----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQ 225 (285)
Q Consensus 157 v~l~v-~d~~~a~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h 225 (285)
..|.+ .|.++|++||+++||+++.......+ +...-..+..+ ...+-+......... .+....+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEE
Confidence 34666 89999999999999999998764221 11122223322 233333322111111 1234568
Q ss_pred EEEEeCC---HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 226 IAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 226 ~~~~v~d---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
+++.|+| +++++++|.+.| ++..++.+.+++ .+..+++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 8999886 667889987766 888888777665 68899999999999974
No 166
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.14 E-value=8.5e-10 Score=76.63 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=78.3
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCC-----c-ccccCCcceeE
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-----T-EYDKGNGYAQI 226 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~-~~~~~~~~~h~ 226 (285)
....|+|.|+|++++++||+. |||+..+... +......... ++ -..+-|.+.+=. . .....+.-..+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~s--de~a~~mi~~--~n--i~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFS--DEDAACMIIS--DN--IFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcc--cccceeEEEe--cc--EEEEEeccHHhhhhcccccccccCCceEEE
Confidence 346789999999999999987 9999887632 2222222121 11 223323221100 0 01233445678
Q ss_pred EEEeC---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 227 AIGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 227 ~~~v~---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
||.+. +++++.++..+.|++...++.+..+. +...|.|||||.||++-.+.
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCccccccc--cceeeeCCCCCeEEEEEeCH
Confidence 88874 68889999999999998888777664 34578999999999987654
No 167
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.14 E-value=3.4e-10 Score=97.38 Aligned_cols=103 Identities=19% Similarity=0.350 Sum_probs=74.0
Q ss_pred cCCcceeeEEEEEeC--CHHHHHHHHHHccCCEEeeEeeCCCC--ceEEEEeecCCCCCceEEEEEeccCC--Cc-----
Q 023245 18 KSDKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV--DK----- 86 (285)
Q Consensus 18 ~~~~~~i~hv~i~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~--~~----- 86 (285)
.+.+.+|+||++.|. |++++.+||+++|||+.......... ......+. .......+++..+... .+
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~--~~~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMA--SPDGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEE--CCCCcEEEEEeccCCCCCCCHHHHH
Confidence 345789999999999 99999999999999998876553321 22112222 2123456777653211 11
Q ss_pred --cCCCCCccEEEEEECCHHHHHHHHHHcCCeeecCCc
Q 023245 87 --YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 122 (285)
Q Consensus 87 --~~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~ 122 (285)
...|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 123789999999999999999999999998876654
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.14 E-value=1.3e-09 Score=84.37 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=85.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCC--C---cc-------CCCC
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D---KY-------DIGT 91 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~---~~-------~~~~ 91 (285)
|+|+.+.|+|++++.++|++.|||++.....++..+.....+.++. . +||+...... . .. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 7899999999999999998889999998888877555556665543 2 6777663211 1 00 1356
Q ss_pred CccEEEEEECCHHHHHHHHHHcCCeeecCCcccCCCC--EEEEEEECC----CCCeEEEEEcCC----------CCCCce
Q 023245 92 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGP----------TPEPLC 155 (285)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~dP----dG~~iel~~~~~----------~~~~~~ 155 (285)
++..+|+.++|+++..+++++.|+... .+...++.. ...++..++ .+..-.+++-.. ...+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 888999999999999999999997621 112111111 223455553 244556664322 234789
Q ss_pred eEEEeecChHHHHHHHHHhc
Q 023245 156 QVMLRVGDLDRAINFYKKAF 175 (285)
Q Consensus 156 hv~l~v~d~~~a~~FY~~~l 175 (285)
+|.+.+.|.+++.++|+++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.13 E-value=6.8e-10 Score=77.09 Aligned_cols=116 Identities=24% Similarity=0.229 Sum_probs=74.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEecc-------CCCccCCCCCcc
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY-------GVDKYDIGTGFG 94 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-------~~~~~~~~~~~~ 94 (285)
++...|+|.|+|++++++||.. |||+...+...+.. ..+-.+. +. .+.|.... ....-...+.-.
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a----~~mi~~~-ni--~vMLL~~~~fq~F~~~~i~dt~~s~ev 73 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA----ACMIISD-NI--FVMLLEEARFQTFTKRQIADTTKSREV 73 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCcccccc----eeEEEec-cE--EEEEeccHHhhhhcccccccccCCceE
Confidence 3556789999999999999976 99998766553321 1121211 11 12222110 011111223345
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 95 HFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 95 ~i~~~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
.+++.+.+ ++++.+++.+.|.+...++.... ..+...|+|||||.||++.-
T Consensus 74 li~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 74 LISLSAGSREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred EEEeccCcHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEe
Confidence 67888864 99999999999999876655543 33456799999999999854
No 170
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.2e-08 Score=74.16 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=83.1
Q ss_pred EEEeec-ChHHHHHHHHHhcCCeeeeeecCCC----------CceEEEEeeeCCCCceeEEEecccCCCccc-ccCCcce
Q 023245 157 VMLRVG-DLDRAINFYKKAFGMELLRKRDNPD----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEY-DKGNGYA 224 (285)
Q Consensus 157 v~l~v~-d~~~a~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~ 224 (285)
..|... |.++|++||+++||.++..+...++ +...=..+..+ ...+-+......... ..+..-.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeE
Confidence 356677 9999999999999999998877666 22222223322 122222221111111 2223445
Q ss_pred eEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 225 QIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 225 h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
-|.+.++|+++..+++.+.|+++..++.+..++ .++..++||.|+.|-|.....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 678888899999999999999999998877776 789999999999999976654
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.05 E-value=1.1e-09 Score=80.25 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=74.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCce---EEEEeecCCCCCceEEEE--------EeccCCC-ccCC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY---TNAFLGYGPEDSHFVVEL--------TYNYGVD-KYDI 89 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l--------~~~~~~~-~~~~ 89 (285)
++++||+|.|+|+++|++||+++||++............ ...+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 478999999999999999999999999987654332221 111111110000000000 0000000 0011
Q ss_pred C-CCccEEEEEECC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEE
Q 023245 90 G-TGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 146 (285)
Q Consensus 90 ~-~~~~~i~~~v~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~ 146 (285)
+ .+..|+++.+++ .......+...|..+..... ..++. .+|++||||+.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 246789999998 66777777788887655433 22222 6999999999999874
No 172
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.97 E-value=3.2e-09 Score=77.68 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=73.4
Q ss_pred CceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCce---EEEEeeeCCC--CceeEE------EecccCCCc-ccccC
Q 023245 153 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY---TIAVMGYGPE--DKNAVL------ELTYNHGVT-EYDKG 220 (285)
Q Consensus 153 ~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~l------~l~~~~~~~-~~~~~ 220 (285)
++.|+.+.|+|+++|.+||+++||+++........... ...+...... ...... ......... ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 68999999999999999999999999988754332211 1111111100 000000 000000000 01111
Q ss_pred -CcceeEEEEeCC---HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 221 -NGYAQIAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 221 -~~~~h~~~~v~d---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
.+..|+++.+++ ...........|..+..... ... +..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 357899999998 56666677777877655443 222 228999999999999974
No 173
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.84 E-value=8.8e-09 Score=83.02 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=91.5
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc-----cccCCcceeE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-----YDKGNGYAQI 226 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~~~~~~~h~ 226 (285)
.+++||.+.|.|...++.||+..|||+.......+.+...+.......+...+.+.-.+.+.... ...|.++--+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkdv 95 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDV 95 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhce
Confidence 57899999999999999999999999998765443322222222111222222222222222211 1356778899
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccCCccCCCC--CceEEEEECCCCCeEEEeeccchhcc
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITREPGPLPGI--NTKITACLDPDGWKSVFVDNLDFLKE 283 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~DPdG~~iei~~~~~~~~~ 283 (285)
||+|+|.+++.+.+.++|+++..+|...... ..+++.++.+.-...-++|+..++++
T Consensus 96 afeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 96 AFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred EEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 9999999999999999999999998765433 24677888888777778887777654
No 174
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.84 E-value=2.6e-08 Score=85.51 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=72.9
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCC-----ceEEEEeecCCCCCceEEEEEeccCC---Cc-----
Q 023245 20 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----RYTNAFLGYGPEDSHFVVELTYNYGV---DK----- 86 (285)
Q Consensus 20 ~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~---~~----- 86 (285)
.+.+|+||++.|++++++..||+++|||+.....+.++- +.....+..+ .....+.+..+... .+
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcEEEEeccCCCCCCCcChHHHH
Confidence 468999999999999999999999999998765543221 1233444332 33456777664321 11
Q ss_pred --cCCCCCccEEEEEECCHHHHHHHHHHc----CCeeecCC
Q 023245 87 --YDIGTGFGHFGIAVEDVAKTVDLVKAK----GGKVTREP 121 (285)
Q Consensus 87 --~~~~~~~~~i~~~v~di~~~~~~l~~~----g~~~~~~~ 121 (285)
...|.|++||+|.|+||.++.++|+++ |++....|
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 124689999999999999999999999 98877643
No 175
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.83 E-value=3.2e-08 Score=82.06 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=70.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEEC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 101 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~ 101 (285)
-+..||+|.|+|+++|++||+++|++.. . .++.. +.+ + ..-+.+-+.+. + .....-..+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde~a--~cm--~--dtI~vMllt~~-D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-W----DGDKL--FLL--G--KTSLYLQQTKA-E----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-C----CCCcc--ccc--c--CcEEEEEecCC-C----CCCcceEEEEeccC
Confidence 4567999999999999999999877763 2 22221 222 2 11122222222 1 11234456888887
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 102 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 102 d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
+ ++++++++.+.|++...++.+... + --|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEE
Confidence 5 999999999999977666665554 2 3389999999999854
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.76 E-value=8.6e-08 Score=79.59 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 231 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (285)
.+..||+|.|+|+++|++||+++|++.. .. +... . .+ +. .-..+-+.+. ......-..+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~a-~-cm--~d--tI~vMllt~~-----D~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDKL-F-LL--GK--TSLYLQQTKA-----EKKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCcc-c-cc--cC--cEEEEEecCC-----CCCCcceEEEEeccC
Confidence 5678999999999999999999988874 22 2211 1 12 11 1233333332 112234467888886
Q ss_pred ---CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEee
Q 023245 232 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 276 (285)
Q Consensus 232 ---d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 276 (285)
+++++.++..++|++...++.+++. +| -|.|||||.||++=
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf--~r--sf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP--LR--LVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC--cc--eeECCCCCEEEEEE
Confidence 5778999999999987777776666 34 67999999999973
No 177
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.72 E-value=6.8e-07 Score=62.07 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=63.1
Q ss_pred eEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECCHH
Q 023245 25 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 104 (285)
Q Consensus 25 ~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~di~ 104 (285)
.+-+|.|+|-+..++||++.|||++..+.. +.++++.......++|+-.+..........-.+..+.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 356789999999999999999999987654 35667655444555665543222112233346889999999866
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 105 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 105 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
++ +.|.++|.++. .-..+...+.|-..+|.|.++.++..
T Consensus 76 EI-e~LLar~~~~~---~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 76 EI-EALLARGAQYD---RLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HH-HHHHHC-S--S---EEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HH-HHHHhcccccc---eeEEcCCceEEEEECCCCCEEEEEEc
Confidence 65 34455555422 11112222357788999999998854
No 178
>PRK10148 hypothetical protein; Provisional
Probab=98.59 E-value=9.4e-06 Score=60.68 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=75.8
Q ss_pred EEEeC-CHHHHHHHHHHccCCEEeeEee---C-----------------CCCceEEEEeecCCCCCceEEEEEeccCCCc
Q 023245 28 VYRVG-DLDKTIKFYTECLGMKLLRKRD---I-----------------PEDRYTNAFLGYGPEDSHFVVELTYNYGVDK 86 (285)
Q Consensus 28 ~i~v~-d~~~a~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 86 (285)
-|..+ |.++|++||+++||.++..... . +++...++.+.++.. .+.+... ...
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~--~~~ 79 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDA--IPS 79 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECC--CCC
Confidence 35565 8999999999999988764421 1 123455666666531 2322221 111
Q ss_pred cCCCCCccEEEEEECCHHH---HHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCC
Q 023245 87 YDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 149 (285)
Q Consensus 87 ~~~~~~~~~i~~~v~di~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~ 149 (285)
........++++.++|.++ ++++| +.|.++..++.+.+|+.+ ...++||.|+.|.|...+.
T Consensus 80 ~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~ 143 (147)
T PRK10148 80 GKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQ 143 (147)
T ss_pred cCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCC
Confidence 1111123567888888766 55655 688999999999999876 4889999999999986543
No 179
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.45 E-value=9.5e-06 Score=56.46 Aligned_cols=115 Identities=21% Similarity=0.331 Sum_probs=63.8
Q ss_pred eeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCc--ccccCCcceeEEEEeCC
Q 023245 155 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDD 232 (285)
Q Consensus 155 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~~~v~d 232 (285)
.+.+|+|.|-+..++||++.|||++..... .+++++-... ...+-|-+.+... ...+...+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~--~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQK--EERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT----EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCC--ceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 467899999999999999999999987632 2444442233 3333333333332 22344688999999988
Q ss_pred HHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchh
Q 023245 233 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 281 (285)
Q Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 281 (285)
...+.+.|. +|.++... ..+-.++.+-..+|+|..|.+...++..
T Consensus 74 ~~EIe~LLa-r~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd~~ 118 (125)
T PF14506_consen 74 PKEIEALLA-RGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAEDDIS 118 (125)
T ss_dssp HHHHHHHHH-C-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S-GG
T ss_pred HHHHHHHHh-ccccccee---EEcCCceEEEEECCCCCEEEEEEcCCHh
Confidence 666555444 44443221 1222356778899999999999988754
No 180
>PRK10148 hypothetical protein; Provisional
Probab=98.43 E-value=1.5e-05 Score=59.66 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=71.4
Q ss_pred EEEee-cChHHHHHHHHHhcCCeeeeeecC--------------------CCCceEEEEeeeCCCCceeEEEecccCCCc
Q 023245 157 VMLRV-GDLDRAINFYKKAFGMELLRKRDN--------------------PDYKYTIAVMGYGPEDKNAVLELTYNHGVT 215 (285)
Q Consensus 157 v~l~v-~d~~~a~~FY~~~lG~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 215 (285)
..|.. .+.++|++||+++||.++...... +++...-..+..++ ..+-+.....
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g----~~lm~sD~~~-- 78 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG----SDIMMSDAIP-- 78 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC----EEEEEECCCC--
Confidence 34556 489999999999999887654321 01222223333221 2222222111
Q ss_pred ccccCCcceeEEEEeCCHHH---HHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 216 EYDKGNGYAQIAIGTDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 216 ~~~~~~~~~h~~~~v~d~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
.........++++.++|.++ +.++| +.|+++..++.+..++ .++..++||.|+.|.|...
T Consensus 79 ~~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 79 SGKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CcCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEec
Confidence 11111124678888888776 56666 5788999888877775 6889999999999999765
No 181
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.42 E-value=7.7e-07 Score=73.41 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=74.1
Q ss_pred CcceeeEEEEEeC--CHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc-------cCCC
Q 023245 20 DKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-------YDIG 90 (285)
Q Consensus 20 ~~~~i~hv~i~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~ 90 (285)
.+..|+|++..|. .++.+..||+++|||+.....+.++.......-.+-+....+.|.+.......+ ...|
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G 243 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRG 243 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCC
Confidence 4578999998885 999999999999999998887765542211111122223345555554332222 1257
Q ss_pred CCccEEEEEECCHHHHHHHHHHcCCeeecCCcc
Q 023245 91 TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGP 123 (285)
Q Consensus 91 ~~~~~i~~~v~di~~~~~~l~~~g~~~~~~~~~ 123 (285)
.|+.||+|.++||-++.++|++.|++....|..
T Consensus 244 ~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 244 EGIQHIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred CcceEEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 799999999999999999999999998765543
No 182
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.38 E-value=5.3e-06 Score=60.69 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCcceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc----cCCCCCcc
Q 023245 19 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFG 94 (285)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~ 94 (285)
..+.+++||-+.|.+.++...+++ .|||+.+.+-. ... ...++-| + ..+.++..+.... ..+|+++.
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hr--sk~--v~l~rQG--~--I~~vln~ep~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHR--SKD--VTLYRQG--D--INFVLNSEPDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCEC--CCS--EEEEEET--T--EEEEEEEESTSCHHHHHHHHSSEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecC--Ccc--eEEEEeC--C--EEEEEeCCCcchHHHHHHhcCCEEE
Confidence 356899999999999888888885 69999886542 212 2223322 2 3444444332211 13688999
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCC
Q 023245 95 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 150 (285)
Q Consensus 95 ~i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~ 150 (285)
.|+|+|+|.+++++++.+.|++....+... +....--++.++|.++.+++....
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999999877665332 233356689999999999987544
No 183
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.07 E-value=1.4e-05 Score=61.90 Aligned_cols=89 Identities=24% Similarity=0.400 Sum_probs=50.7
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc------------cccCC
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE------------YDKGN 221 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------------~~~~~ 221 (285)
|+|+.+.|+|++++.++|++.|||.+......+..+-.=..+..+ ...|||+....... ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~----~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG----DGYLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S----SSEEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC----CceEEEEEeCCcccccccccceechhhcCCC
Confidence 689999999999999999888999999876655433222222222 23777765322110 12467
Q ss_pred cceeEEEEeCCHHHHHHHHHhcCCe
Q 023245 222 GYAQIAIGTDDVYKTAEAIKLSGGK 246 (285)
Q Consensus 222 ~~~h~~~~v~d~~~~~~~l~~~g~~ 246 (285)
++.++||.++|+++..++|++.|+.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCC
Confidence 8999999999999999999999976
No 184
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.02 E-value=3.6e-05 Score=56.38 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=77.3
Q ss_pred CCCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcc----cccCCcceeE
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE----YDKGNGYAQI 226 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~ 226 (285)
..++++|.+.+.+.+++..+++ .|||+..-+.. . -...++..+ ...+-+...+.... ...|+++--+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hr-s-k~v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHR-S-KDVTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCEC-C-CSEEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHHH-HhCcceEEecC-C-cceEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 4568999999999888888886 59999987642 2 122333222 23444433222211 1357899999
Q ss_pred EEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccchh
Q 023245 227 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 281 (285)
Q Consensus 227 ~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 281 (285)
+|.|+|.++++++..++|.+....+.... .-..--++-+.|.++-|+++...+
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~~~ 130 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYGDK 130 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SSS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCCCC
Confidence 99999999999999999999887653222 245678899999999999986543
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.37 E-value=0.012 Score=42.06 Aligned_cols=96 Identities=19% Similarity=0.367 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHccCCE-EeeEeeCC------CCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEECC--
Q 023245 32 GDLDKTIKFYTECLGMK-LLRKRDIP------EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 102 (285)
Q Consensus 32 ~d~~~a~~FY~~~lG~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v~d-- 102 (285)
.+.++|.+||+++||-. +......+ .+...++.+.++. . .+...... +....+++ .++++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g--~--~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG--Q--KLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT--E--EEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC--e--EEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 69999999999999843 33333322 2244455555542 1 22222222 23333333 578888887
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEE
Q 023245 103 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 145 (285)
Q Consensus 103 -i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~ 145 (285)
+++++++|.+-|- ++ .. ...+.|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~-~~-~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WF-SR-YGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TC-CE-EEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------cc-ce-eEEEEeCCCCEEEeC
Confidence 6677888888873 33 33 588999999999885
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.75 E-value=0.0038 Score=42.66 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=42.8
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeC--
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 231 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~-- 231 (285)
+..+.|+|.| +++.+||+++||-.... .+.+.... ++.|.+. + ..-=+.-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~~---------~l~f~ea~----G~DL~~~-~------~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLPF---------FLTFQEAQ----GPDLTIE-N------NETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHTT---------TEEEEE-------CCGSS--T------TSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCCc---------eEEEeecc----CCccccC-C------CcEEeeEEEEEEecCc
Confidence 4578999999 88999999988733211 12222211 1111111 0 01124556778887
Q ss_pred -CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEE
Q 023245 232 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 274 (285)
Q Consensus 232 -d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei 274 (285)
|+.++.+++.+. .+..+.+ .+++.+.||++..|.+
T Consensus 65 ~Dl~~L~~~le~~--~~fidKk------~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQ--EFFIDKK------EKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS---EE--TT-------SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhccc--ceEecCC------ceEEEEECCcceEEEe
Confidence 788888888873 3455443 5789999999988876
No 187
>PF15067 FAM124: FAM124 family
Probab=96.62 E-value=0.03 Score=44.23 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=61.2
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEec-cCCCccCCCCCccEEEE
Q 023245 22 RRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN-YGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 22 ~~i~hv~i~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~~~~i~~ 98 (285)
..|-.++|+|+ |.+.+.+||+-+|+-+...+.. + +. .+.-+.+.+..+.|.+-+- .+..+.+ ..-.-+.|
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~--FC-~F~lys~~~~~iQlsLK~lp~~~~p~p--~esavLqF 199 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D--FC-FFTLYSQPGLDIQLSLKQLPPGMSPEP--TESAVLQF 199 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C--cE-EEEEecCCCeEEEEEeccCCCCCCccc--ccceEEEE
Confidence 46778899999 9999999999999977654322 2 21 2222233333334433321 1211111 12245899
Q ss_pred EECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEE
Q 023245 99 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 144 (285)
Q Consensus 99 ~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel 144 (285)
.|.|+.+++.-|=.-..+ ...+ + --..|||||.|-+
T Consensus 200 ~V~~igqLvpLLPnpc~P-------IS~~-r--WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSP-------ISET-R--WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCccc-------ccCC-c--ceeeCCCCCEecc
Confidence 999999886543322211 1112 2 3379999998753
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.36 E-value=0.19 Score=35.89 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=51.2
Q ss_pred cChHHHHHHHHHhcCCee-eeeecCCC------CceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHH
Q 023245 162 GDLDRAINFYKKAFGMEL-LRKRDNPD------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY 234 (285)
Q Consensus 162 ~d~~~a~~FY~~~lG~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~ 234 (285)
.+.+.|.+||+++||-.. ......++ +...-..+..+ +..+-..... ..+..+ ....+++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~-~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFG-NNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS-----TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCC-CcEEEEEEcCCHH
Confidence 789999999999999432 22222221 12222223322 1222222111 122222 3367788887654
Q ss_pred ---HHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEe
Q 023245 235 ---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 275 (285)
Q Consensus 235 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~ 275 (285)
.+.++|.+.|- .. .+...++|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WF-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TC-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------cc-ceeEEEEeCCCCEEEeC
Confidence 47778887774 22 37889999999999986
No 189
>PF15067 FAM124: FAM124 family
Probab=96.08 E-value=0.21 Score=39.61 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred EEEECCCCCeEEEEEcCCCCCCceeEEEeec--ChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCCCCceeEEEec
Q 023245 132 AFIEDPDGYKFELLERGPTPEPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELT 209 (285)
Q Consensus 132 ~~~~dPdG~~iel~~~~~~~~~~~hv~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 209 (285)
||-.+|+-=+|.+-+- -....+..++|.|+ |.+.+++||+-+|+-+..... ++ + .+|.-+... +..+.|.
T Consensus 108 fysl~~~~PlWavr~V-H~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k--~~--F-C~F~lys~~--~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQV-HYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQK--ED--F-CFFTLYSQP--GLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEeee-eccccEEEEEEEecCCCHHHHHHHHHHHhccCcceee--CC--c-EEEEEecCC--CeEEEEE
Confidence 4455554444444322 23467889999998 999999999999998876543 22 2 233333333 2333333
Q ss_pred ccCCCccc-ccCCcceeEEEEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEE
Q 023245 210 YNHGVTEY-DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 274 (285)
Q Consensus 210 ~~~~~~~~-~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei 274 (285)
...-.... .....-.-+.|.|.|+-++...|=.-= .|.+.++ .-.+|||||.|-+
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLLPnpc---------~PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNPC---------SPISETR-WQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccCCCCc---------ccccCCc-ceeeCCCCCEecc
Confidence 22111111 122344679999999887765543211 1222233 4679999999843
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.23 E-value=0.065 Score=36.72 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=39.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCCCceEEEEEeccCCCc---cCCCCCccEEEEE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHFGIA 99 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~~i~~~ 99 (285)
.+.-|.|.|.| +++.+||+++||-... ..+.+.+..++.- ....=++-.+-|.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~-----------------------~~l~f~ea~G~DL~~~~~~twDLe~Lkf~ 60 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP-----------------------FFLTFQEAQGPDLTIENNETWDLEMLKFQ 60 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT-----------------------TTEEEEE---CCGSS-TTSBSSEEEEEEE
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC-----------------------ceEEEeeccCCccccCCCcEEeeEEEEEE
Confidence 46778999999 8899999998862110 0122222222111 0111245567888
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEE
Q 023245 100 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 143 (285)
Q Consensus 100 v~---di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~ie 143 (285)
|+ |+.++.+++.+.++= .+. ...++.+.||.+.-+-
T Consensus 61 V~~~~Dl~~L~~~le~~~~f-------idK-k~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 61 VPKDFDLAALKSHLEEQEFF-------IDK-KEKFLVTSDPSQIELW 99 (101)
T ss_dssp ES-S--HHHHHHHTTTS-EE---------T-T-SEEEEE-TTS-EEE
T ss_pred ecCcccHHHHHHHhcccceE-------ecC-CceEEEEECCcceEEE
Confidence 88 588888888884431 112 1225778999996543
No 191
>PRK11700 hypothetical protein; Provisional
Probab=87.36 E-value=6.1 Score=30.47 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=46.6
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceE-EEEeeeCC---CCceeEEEecccCCCcccccCCcceeEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYT-IAVMGYGP---EDKNAVLELTYNHGVTEYDKGNGYAQIA 227 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (285)
-.++||+++|.+.+.|.+|.+..+.+-.......-.++.. ++.+.-+- +.....+||+++... . .+-.|.-|+-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k-~-Yp~eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEK-R-YPHEGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC-C-CCCCCceEEE
Confidence 3589999999999999999987664433322112222222 22222111 223467788776553 2 3446888999
Q ss_pred EEeC
Q 023245 228 IGTD 231 (285)
Q Consensus 228 ~~v~ 231 (285)
+.++
T Consensus 116 lVlp 119 (187)
T PRK11700 116 LVLP 119 (187)
T ss_pred EEec
Confidence 9875
No 192
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.93 E-value=13 Score=27.33 Aligned_cols=103 Identities=16% Similarity=0.331 Sum_probs=55.9
Q ss_pred EEeCCHHHHHHHHHHccCC-EEeeEeeC----C---CCceEEEEeecCCCCCceEEEEEeccCCCccCCCCCccEEEEEE
Q 023245 29 YRVGDLDKTIKFYTECLGM-KLLRKRDI----P---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 100 (285)
Q Consensus 29 i~v~d~~~a~~FY~~~lG~-~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~i~~~v 100 (285)
..-.+.++|..||.++|-= ++...... + .+.+..+.+.++... .+.+. ......+... -...+.+.+
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~---f~~ld-~g~~~~f~fn-eA~S~~v~~ 85 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQS---FMALD-GGPNTSFKFN-EAFSFQVAC 85 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeE---EEEEc-CCCCcCCCcC-ccEEEEEEc
Confidence 4448999999999998842 22211111 1 123333444443211 11111 1111112222 123455555
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 101 ED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 101 ~d---i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
+| ++.+..+|...|.. ... ..+++|-.|.-|+|+..
T Consensus 86 ~~q~E~Drlwnal~~~g~e----------~~~-cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGE----------AEA-CGWLKDKFGVSWQIVPR 124 (151)
T ss_pred CCHHHHHHHHHHHhccCcc----------hhc-ceeEecccCcEEEEcHH
Confidence 55 88888999988852 112 37899999999998843
No 193
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=84.58 E-value=13 Score=27.51 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=45.6
Q ss_pred ceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCceE-EEEeeeCC---CCceeEEEecccCCCcccccCCcceeEEEE
Q 023245 154 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYT-IAVMGYGP---EDKNAVLELTYNHGVTEYDKGNGYAQIAIG 229 (285)
Q Consensus 154 ~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (285)
++|++++|.+.+.|.+|.+..+.+-.......-.++.. ++.+.-+- +..-..+||+++... .| ...|.-|+-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k-~Y-p~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDK-KY-PQEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CC-CCCCceEEEEE
Confidence 68999999999999999987775433332222222222 22222111 223466778776443 23 44688899998
Q ss_pred eC
Q 023245 230 TD 231 (285)
Q Consensus 230 v~ 231 (285)
++
T Consensus 80 lp 81 (149)
T cd07268 80 IP 81 (149)
T ss_pred ec
Confidence 75
No 194
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=84.50 E-value=11 Score=29.22 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=40.9
Q ss_pred CCceeEEEeecChHHHHHHHHHhcCCeeeeeecCCCCce-EEEEeeeC---CCCceeEEEecccCCCcccccCCcceeEE
Q 023245 152 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYG---PEDKNAVLELTYNHGVTEYDKGNGYAQIA 227 (285)
Q Consensus 152 ~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (285)
-.++|++++|++.+.|.+|-+..+..=.......-.++. .++.+.-+ .+.....+||+++... . ..-.|.-|+-
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K-~-Yp~eGWEHIE 110 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK-R-YPQEGWEHIE 110 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS----SS-EEEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC-C-CCCCCceEEE
Confidence 347999999999999999999887655443322222222 22222211 1223456777776552 2 2346889999
Q ss_pred EEeC
Q 023245 228 IGTD 231 (285)
Q Consensus 228 ~~v~ 231 (285)
|.++
T Consensus 111 ~Vip 114 (185)
T PF06185_consen 111 FVIP 114 (185)
T ss_dssp EE--
T ss_pred EEec
Confidence 9885
No 195
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=80.50 E-value=11 Score=24.75 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcC
Q 023245 102 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 148 (285)
Q Consensus 102 di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~ 148 (285)
+.+++.+++.+.|+.+.. .+..+++.+-+...|.||..+++.=.+
T Consensus 30 ~~~~~~~~l~~~G~~v~~--ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE--VEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEE--EEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 688999999999995543 444334445688999999999997554
No 196
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=76.48 E-value=7.2 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccch
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 280 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 280 (285)
+.+++.++|.+.|..+.....+..+ .+.+...|.||..+|+.-....
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcCCC
Confidence 7889999999999865443321222 4678899999999999866543
No 197
>PRK11700 hypothetical protein; Provisional
Probab=75.12 E-value=37 Score=26.34 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=45.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCC-----CCceEEEEEeccCCCccCCCCCccEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGHF 96 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~~~~i 96 (285)
..++||.+.|++.+.|.+|-+..+..-..-.... -++.-...+.+... ..--+++|..+.+ ..++ -.|.-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~-INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENI-INGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-HEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEE
Confidence 5689999999999999999987664332222211 12223333333221 1122666665432 2222 3478899
Q ss_pred EEEECC
Q 023245 97 GIAVED 102 (285)
Q Consensus 97 ~~~v~d 102 (285)
-+.++.
T Consensus 115 ElVlp~ 120 (187)
T PRK11700 115 ELVLPG 120 (187)
T ss_pred EEEecC
Confidence 999984
No 198
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=73.40 E-value=1.7 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.1
Q ss_pred CCCceeEEEeecChHHHHHHHHHhc
Q 023245 151 PEPLCQVMLRVGDLDRAINFYKKAF 175 (285)
Q Consensus 151 ~~~~~hv~l~v~d~~~a~~FY~~~l 175 (285)
.+.++..++.+++.+++.+||+..|
T Consensus 9 igp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cCccccCCCccccccchhHHHHHHH
Confidence 4667778888899999999999866
No 199
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=66.72 E-value=14 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=34.4
Q ss_pred eEEEEE--e---CCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCC
Q 023245 25 LHVVYR--V---GDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGP 69 (285)
Q Consensus 25 ~hv~i~--v---~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 69 (285)
+|++|. . ..++.-.+++. .||+.+.....++..+....++....
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~-~lGy~~~G~Y~f~~kkl~a~~f~p~d 84 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFA-ALGYEPVGYYDFPAKKLHATWFRPPD 84 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHH-TTTEEEEEEEEEGGGTEEEEEEEETS
T ss_pred eeeEEEecCCCchhHHHHHHHHH-HcCCEEcceecccccCceEEEecCCC
Confidence 899998 3 47888899996 49999998888777776666766543
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.26 E-value=16 Score=22.26 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.6
Q ss_pred cceeEEEEeCCHHHHHHHHHhcCCee
Q 023245 222 GYAQIAIGTDDVYKTAEAIKLSGGKI 247 (285)
Q Consensus 222 ~~~h~~~~v~d~~~~~~~l~~~g~~~ 247 (285)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678899999999999999999875
No 201
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.43 E-value=36 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCE-EEEEEECCCCCeE
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNT-VIAFIEDPDGYKF 142 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~dPdG~~i 142 (285)
+.++.+-+.+.|+.+......-.++.. -+||+.|.+|..+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 667778889999987765444333332 3699999999865
No 202
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=60.52 E-value=19 Score=30.49 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.3
Q ss_pred ccCCcceeEEEEe------CCHHHHHHHHHhcCCeec
Q 023245 218 DKGNGYAQIAIGT------DDVYKTAEAIKLSGGKIT 248 (285)
Q Consensus 218 ~~~~~~~h~~~~v------~d~~~~~~~l~~~g~~~~ 248 (285)
..|..++|+.+.| .|++++.+.|+++|++..
T Consensus 180 ~~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 180 AHGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HHTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 3678999999999 999999999999999977
No 203
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=60.09 E-value=80 Score=24.54 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=44.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCC-----CCCceEEEEEeccCCCccCCCCCccEE
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-----EDSHFVVELTYNYGVDKYDIGTGFGHF 96 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~l~~~~~~~~~~~~~~~~~i 96 (285)
-.++||++.|++.+.|.+|-+..+..-..-....-++ .-...+.+.. ...--+++|..+.+ ..++ -.|.-|+
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~ING-RPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Yp-~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMING-RPICLFKLNQPLQFGGWSIDCVELPYPKD-KRYP-QEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETT-EEEEEEEEEEEEEETTEEEEEEEEE---S-S--S-S-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCC-eeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCCC-CCCceEE
Confidence 5689999999999999999998876554333222222 2222222211 11122667766543 2222 3478899
Q ss_pred EEEECC-HHHHHHHHHH
Q 023245 97 GIAVED-VAKTVDLVKA 112 (285)
Q Consensus 97 ~~~v~d-i~~~~~~l~~ 112 (285)
-|.++. .+...+++++
T Consensus 110 E~Vip~~~~~~~~~~~~ 126 (185)
T PF06185_consen 110 EFVIPSDAQTLLEQALQ 126 (185)
T ss_dssp EEE--S-GGGHHHHHHH
T ss_pred EEEecCCHHHHHHHHHH
Confidence 999984 4445544433
No 204
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.15 E-value=30 Score=21.56 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=20.3
Q ss_pred eeEEEEe--CCHHHHHHHHHhcCCeeccC
Q 023245 224 AQIAIGT--DDVYKTAEAIKLSGGKITRE 250 (285)
Q Consensus 224 ~h~~~~v--~d~~~~~~~l~~~g~~~~~~ 250 (285)
..+.|.+ +|.+.+.+.|+++|+++.++
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3344444 58889999999999988764
No 205
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=49.04 E-value=96 Score=22.13 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCCCCCceeEEEeecChHHHHHHHHHhcCCeeeee
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 182 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~~~~~~hv~l~v~d~~~a~~FY~~~lG~~~~~~ 182 (285)
+..+...|++.|+.+. .+.+.|. +.+.-+.+.|.+.+.|.+-..+ -||.+...
T Consensus 17 L~~~~~~L~eagINiR------------A~tiAdt--------------~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIR------------AFTIADT--------------GDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceE------------EEEeccc--------------cCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 6677888888886532 2434332 4456677788888888888877 68887653
Q ss_pred ec------CCCCceEEEEeeeCCCCceeEEEecccCCCcccccCCcceeEEEEeCCHHHHHHHHHhcCCeeccC
Q 023245 183 RD------NPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITRE 250 (285)
Q Consensus 183 ~~------~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d~~~~~~~l~~~g~~~~~~ 250 (285)
.. ...++..-+.-..+ +...-+..++ .+-....-..+-++|+|++++...|+++|+++...
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~--d~diNldYiY-----AFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLG--DADINLDYIY-----AFVTEKQKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHh--hcCcCceeee-----eeeecCceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 21 00010000000000 0001111111 00011122457789999999999999999987643
No 206
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.60 E-value=1.2e+02 Score=22.59 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=43.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCC-----CCceEEEEEeccCCCccCCCCCccEEEE
Q 023245 24 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGHFGI 98 (285)
Q Consensus 24 i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~~~~i~~ 98 (285)
++||.+.|++.+.|.+|-+..+..-..-.... -++.-...+.+... ..--+++|..+.. ..+ .-.|.-|+-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~-INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Y-p~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENE-INGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKY-PQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 68999999999999999988764433222211 12222333333221 1112566665432 222 2347889999
Q ss_pred EECC
Q 023245 99 AVED 102 (285)
Q Consensus 99 ~v~d 102 (285)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 9974
No 207
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=45.19 E-value=42 Score=20.30 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=21.9
Q ss_pred eCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccc
Q 023245 230 TDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 230 v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 279 (285)
+-++.+..++-...|-.+... .. .-..-..+|||.++.|++...
T Consensus 3 ~~~ls~~ea~~l~~Gr~l~~~-----~~-~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 3 VRELSAEEARDLRHGRRLPAA-----GP-PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EEE--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred ceECCHHHHHHHhCCCccCCC-----CC-CceEEEECCCCcEEEEEEccC
Confidence 345556666666777554332 11 224567899999999997754
No 208
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.69 E-value=93 Score=20.15 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCE-EEEEEECCCCCeE
Q 023245 103 VAKTVDLVKAKGGKVTREPGPVKGGNT-VIAFIEDPDGYKF 142 (285)
Q Consensus 103 i~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~dPdG~~i 142 (285)
+-.+...+...|+.+......-.++.. -.||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 566777888999887765333333222 3699999999865
No 209
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=39.57 E-value=1.7e+02 Score=22.33 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=47.3
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCC------eEEEEEc----------CCCCCC---cee
Q 023245 96 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFELLER----------GPTPEP---LCQ 156 (285)
Q Consensus 96 i~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~------~iel~~~----------~~~~~~---~~h 156 (285)
+-+.+.|.+.+.++|++.|+....... ..-.||-.|++- .+.+-+. +..... -.-
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 456778999999999999965332211 112444444321 1222111 111111 124
Q ss_pred EEEeecChHHHHHHHHHhcCCeeeee
Q 023245 157 VMLRVGDLDRAINFYKKAFGMELLRK 182 (285)
Q Consensus 157 v~l~v~d~~~a~~FY~~~lG~~~~~~ 182 (285)
+.+.|.|.++..+.+. .||++....
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~ 104 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYE 104 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEE
Confidence 7788899999999998 599997554
No 210
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=39.01 E-value=1.3e+02 Score=20.90 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEE--ECCCCCeE--EEEEcCCCCCCceeEEEeecChHHHHHHHH
Q 023245 101 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYKF--ELLERGPTPEPLCQVMLRVGDLDRAINFYK 172 (285)
Q Consensus 101 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~dPdG~~i--el~~~~~~~~~~~hv~l~v~d~~~a~~FY~ 172 (285)
.+.+.+.++|+++++-.+-. +..+. +...+|+ ++..|..+ |+.-.+ ...-..+.+.+.+.+-+..|++
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~-~~~~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDN-GQKFFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT--EEEEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCc-cccEEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 47899999999999865532 33332 3334555 56666543 333222 2346789999999877776665
No 211
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=37.80 E-value=36 Score=24.17 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=51.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEeeEeeCCCCceEEEEeecCCCC----------------CceEEEEEeccCCC
Q 023245 22 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED----------------SHFVVELTYNYGVD 85 (285)
Q Consensus 22 ~~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~l~~~~~~~ 85 (285)
..++-+-+.|.+.+.+.+-.++ -||++....- .-..+...+ ..+...+...
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dV--------laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e---- 106 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDV--------LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE---- 106 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHH-CCcEEEeeeE--------EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeec----
Confidence 4466677889999999999987 8999754321 111111110 1111112211
Q ss_pred ccCCCCCccEEEEEECCHHHHHHHHHHcCCeeecC
Q 023245 86 KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTRE 120 (285)
Q Consensus 86 ~~~~~~~~~~i~~~v~di~~~~~~l~~~g~~~~~~ 120 (285)
..-.-+.++|+|++++.+.|+..|++..+.
T Consensus 107 -----k~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 107 -----KQKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred -----CceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 112347889999999999999999987653
No 212
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.43 E-value=64 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=23.1
Q ss_pred cceeEEEEeCC----HHHHHHHHHhcCCeecc
Q 023245 222 GYAQIAIGTDD----VYKTAEAIKLSGGKITR 249 (285)
Q Consensus 222 ~~~h~~~~v~d----~~~~~~~l~~~g~~~~~ 249 (285)
+...+.++|+| ++.+.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 44567789888 88999999999998754
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=62 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=24.0
Q ss_pred cChHHHHHHHHHhcCCeeeeeecCCCCceEEEEeeeCC
Q 023245 162 GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGP 199 (285)
Q Consensus 162 ~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 199 (285)
.|.++++.||.+.||+++.... +....++|....+
T Consensus 145 a~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdp 179 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDP 179 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc---CceEEEEEeccCC
Confidence 5778889999999999987542 2234555555433
No 214
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.58 E-value=68 Score=19.70 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=18.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCee
Q 023245 225 QIAIGTDDVYKTAEAIKLSGGKI 247 (285)
Q Consensus 225 h~~~~v~d~~~~~~~l~~~g~~~ 247 (285)
.+.+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 44556688889999999999875
No 215
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.00 E-value=1e+02 Score=24.72 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHccCCEEee
Q 023245 32 GDLDKTIKFYTECLGMKLLR 51 (285)
Q Consensus 32 ~d~~~a~~FY~~~lG~~~~~ 51 (285)
.|+.++..||.+.||+++..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 46788899999999999864
No 216
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.61 E-value=2.1e+02 Score=21.29 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=24.7
Q ss_pred CHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeec
Q 023245 232 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 277 (285)
Q Consensus 232 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 277 (285)
.+|++...|.+.|.+ .....|++|--|.-|+|+-+
T Consensus 90 E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 90 EIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcHH
Confidence 466677777777741 13456899999999998743
No 217
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=32.50 E-value=1.3e+02 Score=19.83 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=16.1
Q ss_pred EEeCCHHHHHHHHHHccCCEEeeE
Q 023245 29 YRVGDLDKTIKFYTECLGMKLLRK 52 (285)
Q Consensus 29 i~v~d~~~a~~FY~~~lG~~~~~~ 52 (285)
....+=..|.++|++ |||+...+
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344577789999987 99998754
No 218
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=32.30 E-value=37 Score=17.95 Aligned_cols=20 Identities=30% Similarity=0.752 Sum_probs=14.7
Q ss_pred EeecChHHHHHHHHHhcCCe
Q 023245 159 LRVGDLDRAINFYKKAFGME 178 (285)
Q Consensus 159 l~v~d~~~a~~FY~~~lG~~ 178 (285)
....|.++|+++|++.|.+.
T Consensus 10 ~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 10 RQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHCT-HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 34578999999999977443
No 219
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=2.1e+02 Score=21.66 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.8
Q ss_pred ceEEEEECCCCCeEEEeeccc
Q 023245 259 TKITACLDPDGWKSVFVDNLD 279 (285)
Q Consensus 259 ~~~~~~~DPdG~~iei~~~~~ 279 (285)
.|..|+.|++|....++..-+
T Consensus 120 ~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 120 ERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred cceEEEECCCCeEEEEecCCC
Confidence 478999999999988884433
No 220
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=30.17 E-value=79 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 231 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 231 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
.|++.+.+.|++.|+++... +..+..+|.++|.--+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 58999999999999998763 45555567777776677654
No 221
>PTZ00330 acetyltransferase; Provisional
Probab=29.78 E-value=81 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=19.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHccCCEEeeE
Q 023245 23 RMLHVVYRVGDLDKTIKFYTECLGMKLLRK 52 (285)
Q Consensus 23 ~i~hv~i~v~d~~~a~~FY~~~lG~~~~~~ 52 (285)
++..+.+.++ ..|.+||++ +||+....
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 4556666664 579999976 99998643
No 222
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.59 E-value=1e+02 Score=23.35 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=32.3
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++... +..+..+|.++|.--+|..+
T Consensus 109 IG~rNv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 109 IGNRNGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 33468999999999999998763 45555578887777777654
No 223
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.01 E-value=68 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=9.2
Q ss_pred EEEEECCCCCeEE
Q 023245 261 ITACLDPDGWKSV 273 (285)
Q Consensus 261 ~~~~~DPdG~~ie 273 (285)
...++|++|++|-
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4667999998874
No 224
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.81 E-value=1.1e+02 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=32.4
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++... +..+..+|.++|.--+|..+
T Consensus 102 IG~rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 102 IGARNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 33468999999999999998763 45555578888777777664
No 225
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.88 E-value=1.3e+02 Score=22.95 Aligned_cols=43 Identities=7% Similarity=0.014 Sum_probs=32.1
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++... +..+..+|.++|.--+|..+
T Consensus 111 IG~rNv~~a~~~L~~~gI~i~a~--DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 111 VGLENSEFAVNTLNKYGIPILAK--DFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 34468999999999999998763 55665578777776667553
No 226
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.24 E-value=1.3e+02 Score=23.40 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=32.6
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++.. .+.++..+|.++|..-+|..+
T Consensus 109 IG~rNi~~a~~~L~~~gI~i~a--~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 109 VGEQNAAFAMQFLRDEGIPVVG--SSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHHHcCCcEEE--EeCCCCCCcEEEEECCCCeEE
Confidence 3346899999999999999876 355565578888877777664
No 227
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.10 E-value=1.3e+02 Score=22.97 Aligned_cols=43 Identities=7% Similarity=-0.005 Sum_probs=31.6
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++... +..+..+|.++|.--+|..+
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~--DvGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQ--DLGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 44578999999999999998763 45555567777766667553
No 228
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.84 E-value=1.3e+02 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=32.4
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++.. .+.++..+|.++|.--+|..+
T Consensus 136 IG~rNi~~a~~~L~~~gI~Iva--~DvGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 136 VGEKNVEFVLEYAKREKLNVVA--QDLGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HhHHHHHHHHHHHHHcCCcEEE--EeCCCCCCcEEEEECCCCEEE
Confidence 3446899999999999999876 355665678887777677554
No 229
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=1.9e+02 Score=20.09 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEEEeeccch
Q 023245 234 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 280 (285)
Q Consensus 234 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 280 (285)
..+.+.|+++|+. ..++|+.+|...++..+++.+.
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d~ 61 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYEDF 61 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcCh
Confidence 4566777777754 4578999999999999998853
No 230
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.20 E-value=1.5e+02 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=32.1
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeEE
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSV 273 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ie 273 (285)
--.|++.+.+.|+++|+++... +.++..+|.++|.--+|..+.
T Consensus 113 G~rNie~a~~~L~~~GI~ivae--DvGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 113 GQANAAFARRYLRDEGIRCTAH--SLGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 3468999999999999998763 455555787777776776643
No 231
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=23.86 E-value=1.1e+02 Score=19.25 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=15.7
Q ss_pred CceeEEEee-cChHHHHHHHHHhcCCe
Q 023245 153 PLCQVMLRV-GDLDRAINFYKKAFGME 178 (285)
Q Consensus 153 ~~~hv~l~v-~d~~~a~~FY~~~lG~~ 178 (285)
.+..+.+.| .+-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 344555555 345568888876 7774
No 232
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.55 E-value=1.6e+02 Score=22.26 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=30.8
Q ss_pred EeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 229 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 229 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
--.|++.+.+.|+++|+++... +..+..+|.++|.--+|..+
T Consensus 105 G~rNi~~a~~~L~~~gi~i~a~--dvGG~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 105 GERNIESAKETLKKLGIRIVAE--DVGGDYGRTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHHHCCCcEEEE--EcCCCCCcEEEEECCCCEEE
Confidence 3478999999999999998763 45555567777766666553
No 233
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=23.06 E-value=98 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCeec
Q 023245 224 AQIAIGTDDVYKTAEAIKLSGGKIT 248 (285)
Q Consensus 224 ~h~~~~v~d~~~~~~~l~~~g~~~~ 248 (285)
.|+-..-+|++.+.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4676777899999999999998753
No 234
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.95 E-value=99 Score=19.53 Aligned_cols=14 Identities=50% Similarity=0.859 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCee
Q 023245 165 DRAINFYKKAFGMEL 179 (285)
Q Consensus 165 ~~a~~FY~~~lG~~~ 179 (285)
+++.+||++ +||++
T Consensus 66 ~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEK-LGFEE 79 (79)
T ss_dssp HHHHHHHHH-TTEEE
T ss_pred HHHHHHHHH-CcCCC
Confidence 578999987 99874
No 235
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.39 E-value=1.5e+02 Score=18.25 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=19.4
Q ss_pred CccEEEEEECC---HHHHHHHHHHcCCee
Q 023245 92 GFGHFGIAVED---VAKTVDLVKAKGGKV 117 (285)
Q Consensus 92 ~~~~i~~~v~d---i~~~~~~l~~~g~~~ 117 (285)
....+.+++.+ ++++.+.|++.|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 33456777765 888999999999764
No 236
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.32 E-value=1.6e+02 Score=23.23 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=32.2
Q ss_pred EEeCCHHHHHHHHHhcCCeeccCCccCCCCCceEEEEECCCCCeE
Q 023245 228 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKS 272 (285)
Q Consensus 228 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~i 272 (285)
+--.|++.+.+.|++.|+++.. .+.++..+|.++|.--+|.++
T Consensus 124 IG~rNi~~a~~~L~~~gI~iva--~DvGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 124 VGERNAEFVRDYLQTERIPIVA--EDLLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred chHHHHHHHHHHHHHcCCcEEE--EECCCCCCcEEEEECCCCEEE
Confidence 4447999999999999999876 355665677777766667554
No 237
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=22.04 E-value=1.5e+02 Score=25.96 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=28.9
Q ss_pred ECCCCCeEEEEEcCCCCCCceeEEEeecChHHHHHHHHH
Q 023245 135 EDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKK 173 (285)
Q Consensus 135 ~dPdG~~iel~~~~~~~~~~~hv~l~v~d~~~a~~FY~~ 173 (285)
.||++..+|+..+ ..-+.+.++++|...|..||..
T Consensus 232 ~DpEnR~lEihSp----dg~~tliLR~kdsa~A~~Wf~A 266 (506)
T KOG3551|consen 232 ADPENRQLEIHSP----DGRHTLILRAKDSAEADSWFEA 266 (506)
T ss_pred CCcccceeeeeCC----CCcceEEEEccCcHHHHHHHHH
Confidence 5888888988854 5567888999999999999874
No 238
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=21.76 E-value=1.3e+02 Score=22.39 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=21.7
Q ss_pred eeEEEeec-ChHHHHHHHHHhcCCeeeeee
Q 023245 155 CQVMLRVG-DLDRAINFYKKAFGMELLRKR 183 (285)
Q Consensus 155 ~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 183 (285)
..+.|.|. +-..|+.||++ +||+.....
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 56777774 56699999998 999987653
No 239
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=21.53 E-value=1.5e+02 Score=20.27 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEc
Q 023245 102 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 147 (285)
Q Consensus 102 di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~ 147 (285)
|+.++..+|.+.|+. ..+.|++|+..|+-.+
T Consensus 22 d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgtn 52 (96)
T PF11080_consen 22 DINELNNHLTRAGFS---------------TTLTDEDGNPHELGTN 52 (96)
T ss_pred HHHHHHHHHHhcCce---------------eEEecCCCCEeecCCC
Confidence 588888888888743 5589999999987643
No 240
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.22 E-value=1.2e+02 Score=23.25 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCEEEEEEECCCCCeEEEEEcCCC-----CCCceeEEEeecChHHHHHHHHHhc
Q 023245 101 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----PEPLCQVMLRVGDLDRAINFYKKAF 175 (285)
Q Consensus 101 ~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~dPdG~~iel~~~~~~-----~~~~~hv~l~v~d~~~a~~FY~~~l 175 (285)
+..+++.++..+.-.--..+..-.-.|.. .|.++++||..+.+.-.+.+ ++.-+++.+..++-=+|.+++++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~G-iF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEG-IFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecce-EEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 34777776666544322222122223444 48899999999988776643 3334556665555444444444434
Q ss_pred CCe
Q 023245 176 GME 178 (285)
Q Consensus 176 G~~ 178 (285)
||.
T Consensus 157 gWV 159 (181)
T COG1791 157 GWV 159 (181)
T ss_pred Cce
Confidence 443
No 241
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=21.04 E-value=2e+02 Score=20.83 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=22.5
Q ss_pred CceeEEEee-cChHHHHHHHHHhcCCeeeeeecCCC
Q 023245 153 PLCQVMLRV-GDLDRAINFYKKAFGMELLRKRDNPD 187 (285)
Q Consensus 153 ~~~hv~l~v-~d~~~a~~FY~~~lG~~~~~~~~~~~ 187 (285)
+...|.+.+ .+-.++...|++ +||+.......++
T Consensus 112 ~~~~i~~~~~~~N~~~~~~~~k-~GF~~~g~~~~~~ 146 (152)
T PF13523_consen 112 GVDRIVLDPHEDNTRAIRLYEK-AGFRKVGEFEFPD 146 (152)
T ss_dssp T--EEEEEEBTT-HHHHHHHHH-TT-EEEEEEEESS
T ss_pred CCCEEEEecCcCCHHHHHHHHH-cCCEEeeEEECCC
Confidence 466777777 467888999987 9999988755443
No 242
>PRK10562 putative acetyltransferase; Provisional
Probab=20.88 E-value=3e+02 Score=19.71 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=18.2
Q ss_pred EEEEe-CCHHHHHHHHHHccCCEEeeEe
Q 023245 27 VVYRV-GDLDKTIKFYTECLGMKLLRKR 53 (285)
Q Consensus 27 v~i~v-~d~~~a~~FY~~~lG~~~~~~~ 53 (285)
+.+.| .+=..+.+||++ +||+.....
T Consensus 100 ~~~~v~~~N~~s~~~y~k-~Gf~~~~~~ 126 (145)
T PRK10562 100 LSLEVYQKNQRAVNFYHA-QGFRIVDSA 126 (145)
T ss_pred EEEEEEcCChHHHHHHHH-CCCEEcccc
Confidence 44444 344689999987 999987543
Done!