Query 023246
Match_columns 285
No_of_seqs 391 out of 1577
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9.1E-42 2E-46 259.1 20.9 236 3-270 115-463 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 8E-38 1.7E-42 240.2 16.7 223 3-270 217-442 (459)
3 KOG0263 Transcription initiati 100.0 2.1E-36 4.6E-41 248.7 18.8 202 2-239 450-653 (707)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-36 6.2E-41 231.7 15.3 205 3-243 175-383 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.3E-35 2.9E-40 225.7 16.5 212 3-233 157-479 (480)
6 KOG0279 G protein beta subunit 100.0 6.2E-34 1.3E-38 208.2 20.8 206 3-244 63-271 (315)
7 KOG0279 G protein beta subunit 100.0 3.2E-33 7E-38 204.5 22.6 236 2-269 14-264 (315)
8 KOG0273 Beta-transducin family 100.0 2.9E-33 6.2E-38 218.1 21.2 218 3-241 235-488 (524)
9 KOG0286 G-protein beta subunit 100.0 3.2E-32 7E-37 200.5 23.6 215 3-248 55-272 (343)
10 KOG0263 Transcription initiati 100.0 3.1E-33 6.6E-38 230.2 18.9 245 4-270 379-652 (707)
11 KOG0284 Polyadenylation factor 100.0 2.2E-33 4.9E-38 215.1 14.2 202 3-241 96-300 (464)
12 KOG0286 G-protein beta subunit 100.0 1.1E-31 2.3E-36 197.8 22.0 213 1-243 95-311 (343)
13 KOG0266 WD40 repeat-containing 100.0 3.2E-31 7E-36 221.3 26.2 235 3-269 159-411 (456)
14 KOG0285 Pleiotropic regulator 100.0 4.4E-32 9.6E-37 205.0 17.2 230 3-269 151-391 (460)
15 KOG0645 WD40 repeat protein [G 100.0 2.6E-30 5.5E-35 188.6 24.7 205 2-235 13-225 (312)
16 KOG0266 WD40 repeat-containing 100.0 6.2E-31 1.3E-35 219.6 24.8 221 3-258 203-434 (456)
17 KOG0315 G-protein beta subunit 100.0 1.7E-30 3.6E-35 187.6 19.8 203 2-240 82-293 (311)
18 KOG0273 Beta-transducin family 100.0 1.2E-30 2.5E-35 203.6 20.3 213 2-235 275-523 (524)
19 KOG0284 Polyadenylation factor 100.0 1.2E-31 2.6E-36 205.6 14.3 203 3-240 138-342 (464)
20 KOG0281 Beta-TrCP (transducin 100.0 2.4E-31 5.1E-36 200.7 15.4 231 3-276 237-486 (499)
21 KOG0291 WD40-repeat-containing 100.0 1.3E-29 2.7E-34 208.1 23.4 202 4-241 351-556 (893)
22 PTZ00421 coronin; Provisional 100.0 7.3E-29 1.6E-33 206.8 26.7 213 3-242 75-297 (493)
23 KOG0315 G-protein beta subunit 100.0 4E-29 8.7E-34 180.5 21.5 222 15-269 9-247 (311)
24 KOG0265 U5 snRNP-specific prot 100.0 2.4E-29 5.2E-34 186.0 19.7 230 2-267 46-296 (338)
25 KOG0275 Conserved WD40 repeat- 100.0 4E-30 8.7E-35 192.6 15.1 241 3-271 213-471 (508)
26 KOG0316 Conserved WD40 repeat- 100.0 4.8E-29 1E-33 178.7 18.8 221 3-258 17-282 (307)
27 KOG0292 Vesicle coat complex C 100.0 3.1E-29 6.6E-34 209.3 20.5 215 2-252 50-297 (1202)
28 KOG0295 WD40 repeat-containing 100.0 8.1E-29 1.8E-33 187.6 20.1 196 3-234 193-405 (406)
29 KOG0276 Vesicle coat complex C 100.0 2.1E-29 4.6E-34 203.0 17.5 207 3-243 55-265 (794)
30 KOG0277 Peroxisomal targeting 100.0 4.4E-29 9.5E-34 180.7 16.8 203 4-238 61-268 (311)
31 KOG0296 Angio-associated migra 100.0 1.2E-28 2.5E-33 186.8 19.7 221 2-243 63-364 (399)
32 KOG0295 WD40 repeat-containing 100.0 4.3E-29 9.3E-34 189.1 16.9 233 3-269 108-366 (406)
33 KOG0283 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 205.0 20.3 248 2-270 266-579 (712)
34 KOG0281 Beta-TrCP (transducin 100.0 1.4E-29 3.1E-34 191.1 13.4 224 3-272 197-433 (499)
35 KOG0319 WD40-repeat-containing 100.0 1.1E-28 2.3E-33 202.1 18.6 206 3-234 411-618 (775)
36 KOG0319 WD40-repeat-containing 100.0 1.7E-28 3.6E-33 201.0 19.6 217 4-243 366-585 (775)
37 KOG0645 WD40 repeat protein [G 100.0 4.3E-27 9.2E-32 171.9 24.0 198 2-236 60-262 (312)
38 PTZ00420 coronin; Provisional 100.0 2.1E-27 4.5E-32 199.3 24.8 209 2-237 73-295 (568)
39 KOG0640 mRNA cleavage stimulat 100.0 1.7E-28 3.6E-33 182.7 15.5 224 2-243 111-343 (430)
40 PLN00181 protein SPA1-RELATED; 100.0 3.7E-27 8E-32 210.5 27.0 198 4-237 533-740 (793)
41 KOG0292 Vesicle coat complex C 100.0 1.2E-27 2.6E-32 199.9 20.8 231 2-268 8-281 (1202)
42 KOG0285 Pleiotropic regulator 100.0 1.7E-27 3.7E-32 180.4 19.3 202 4-243 194-397 (460)
43 PTZ00421 coronin; Provisional 100.0 6.9E-27 1.5E-31 195.0 24.6 218 6-239 23-249 (493)
44 PLN00181 protein SPA1-RELATED; 100.0 1.2E-26 2.7E-31 207.1 27.7 234 3-267 483-738 (793)
45 KOG0282 mRNA splicing factor [ 100.0 1.4E-28 3E-33 192.6 12.8 231 3-271 214-466 (503)
46 KOG0274 Cdc4 and related F-box 100.0 3.7E-27 7.9E-32 197.1 22.0 201 2-245 248-451 (537)
47 KOG0313 Microtubule binding pr 100.0 6.1E-27 1.3E-31 178.4 20.8 241 3-269 144-400 (423)
48 cd00200 WD40 WD40 domain, foun 100.0 3.7E-26 8E-31 180.6 25.8 231 2-268 8-250 (289)
49 KOG0291 WD40-repeat-containing 100.0 1E-26 2.2E-31 191.3 22.9 232 2-269 306-552 (893)
50 KOG0276 Vesicle coat complex C 100.0 3.4E-27 7.4E-32 190.4 19.7 227 3-264 13-254 (794)
51 KOG1407 WD40 repeat protein [F 100.0 1.3E-26 2.8E-31 168.6 20.3 223 1-258 18-284 (313)
52 KOG0318 WD40 repeat stress pro 100.0 2.1E-26 4.4E-31 182.4 22.1 219 4-240 60-355 (603)
53 KOG0264 Nucleosome remodeling 100.0 5.2E-27 1.1E-31 182.5 17.5 220 2-237 123-349 (422)
54 PTZ00420 coronin; Provisional 100.0 3.7E-26 8.1E-31 191.7 23.5 189 22-237 50-250 (568)
55 KOG0265 U5 snRNP-specific prot 100.0 1.5E-26 3.3E-31 171.3 17.9 205 2-243 89-304 (338)
56 KOG0310 Conserved WD40 repeat- 100.0 2.9E-26 6.3E-31 179.9 20.4 233 4-274 69-306 (487)
57 KOG0313 Microtubule binding pr 100.0 2.2E-26 4.8E-31 175.4 18.9 210 2-234 192-417 (423)
58 cd00200 WD40 WD40 domain, foun 100.0 2.3E-25 4.9E-30 176.1 25.4 205 3-243 51-257 (289)
59 KOG0277 Peroxisomal targeting 100.0 9.5E-27 2.1E-31 168.7 15.7 199 2-233 103-307 (311)
60 KOG0973 Histone transcription 99.9 4.3E-26 9.2E-31 194.3 20.4 256 4-270 14-358 (942)
61 KOG0264 Nucleosome remodeling 99.9 3.3E-26 7.2E-31 178.0 17.8 207 6-236 180-405 (422)
62 KOG0318 WD40 repeat stress pro 99.9 5.3E-25 1.2E-29 174.4 24.0 198 3-236 147-393 (603)
63 KOG0282 mRNA splicing factor [ 99.9 5.5E-27 1.2E-31 183.7 12.3 196 2-233 257-503 (503)
64 KOG0305 Anaphase promoting com 99.9 1.4E-25 3.1E-30 181.6 20.7 232 3-269 217-463 (484)
65 KOG0293 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 172.8 19.1 232 3-269 269-515 (519)
66 KOG0275 Conserved WD40 repeat- 99.9 5E-26 1.1E-30 170.8 13.9 209 1-243 261-475 (508)
67 KOG0269 WD40 repeat-containing 99.9 4.8E-26 1E-30 187.7 14.8 208 6-243 90-304 (839)
68 KOG0274 Cdc4 and related F-box 99.9 5.7E-25 1.2E-29 184.0 20.7 226 4-271 209-445 (537)
69 KOG0268 Sof1-like rRNA process 99.9 6.7E-26 1.4E-30 172.0 13.5 220 2-241 65-351 (433)
70 KOG0306 WD40-repeat-containing 99.9 2.3E-25 5E-30 183.2 17.6 211 3-237 454-666 (888)
71 KOG0316 Conserved WD40 repeat- 99.9 4.3E-25 9.3E-30 158.6 16.6 192 56-269 12-215 (307)
72 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 161.8 19.8 197 3-237 43-283 (362)
73 KOG0293 WD40 repeat-containing 99.9 8.9E-25 1.9E-29 168.5 18.9 242 3-277 224-480 (519)
74 KOG0300 WD40 repeat-containing 99.9 3.9E-25 8.5E-30 165.5 16.0 217 2-239 147-390 (481)
75 KOG0269 WD40 repeat-containing 99.9 2E-25 4.4E-30 184.0 15.0 203 4-240 134-345 (839)
76 KOG4283 Transcription-coupled 99.9 1.4E-24 3.1E-29 160.8 17.7 215 2-239 42-280 (397)
77 KOG0299 U3 snoRNP-associated p 99.9 1.4E-24 3.1E-29 169.3 18.2 220 2-243 141-364 (479)
78 KOG0647 mRNA export protein (c 99.9 5.3E-24 1.1E-28 158.1 20.0 210 2-244 26-290 (347)
79 KOG0308 Conserved WD40 repeat- 99.9 2.3E-25 5E-30 180.5 13.9 210 8-243 29-251 (735)
80 KOG0643 Translation initiation 99.9 2.7E-23 5.9E-28 151.9 22.8 211 3-250 10-235 (327)
81 KOG0289 mRNA splicing factor [ 99.9 1.5E-23 3.3E-28 162.7 21.9 204 4-243 220-427 (506)
82 KOG0973 Histone transcription 99.9 5.6E-24 1.2E-28 181.6 20.3 216 3-239 69-359 (942)
83 KOG0283 WD40 repeat-containing 99.9 3.5E-24 7.6E-29 178.4 18.5 197 3-237 369-578 (712)
84 KOG0289 mRNA splicing factor [ 99.9 1.2E-23 2.6E-28 163.2 19.9 197 3-233 261-460 (506)
85 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-22 2.7E-27 151.8 24.4 233 3-272 14-267 (311)
86 KOG0641 WD40 repeat protein [G 99.9 2E-22 4.3E-27 144.4 24.2 204 2-237 88-305 (350)
87 KOG1332 Vesicle coat complex C 99.9 9.4E-24 2E-28 152.4 17.3 227 8-264 16-283 (299)
88 KOG0310 Conserved WD40 repeat- 99.9 4.6E-24 9.9E-29 167.6 16.1 200 4-240 27-230 (487)
89 KOG0308 Conserved WD40 repeat- 99.9 9.5E-24 2.1E-28 171.3 17.7 227 5-255 75-306 (735)
90 KOG0306 WD40-repeat-containing 99.9 2.9E-23 6.4E-28 171.0 20.7 232 2-243 372-630 (888)
91 KOG1407 WD40 repeat protein [F 99.9 2.2E-23 4.7E-28 151.9 16.8 190 4-213 65-281 (313)
92 KOG0772 Uncharacterized conser 99.9 1.7E-23 3.7E-28 165.7 17.6 222 3-244 214-454 (641)
93 KOG0278 Serine/threonine kinas 99.9 1.5E-23 3.3E-28 152.0 15.5 200 3-240 100-302 (334)
94 KOG0640 mRNA cleavage stimulat 99.9 7.6E-24 1.6E-28 158.1 14.0 228 3-263 172-422 (430)
95 KOG0646 WD40 repeat protein [G 99.9 6.4E-23 1.4E-27 160.4 19.4 212 4-243 82-315 (476)
96 KOG0267 Microtubule severing p 99.9 1.6E-24 3.4E-29 177.7 10.5 202 6-243 31-234 (825)
97 KOG0278 Serine/threonine kinas 99.9 1.2E-23 2.6E-28 152.5 13.4 232 2-272 58-302 (334)
98 KOG0299 U3 snoRNP-associated p 99.9 6.3E-23 1.4E-27 160.2 17.7 198 2-237 201-412 (479)
99 KOG0305 Anaphase promoting com 99.9 5.2E-23 1.1E-27 166.9 17.2 196 9-243 183-384 (484)
100 KOG0302 Ribosome Assembly prot 99.9 1E-22 2.3E-27 155.5 17.1 218 3-237 151-380 (440)
101 KOG0288 WD40 repeat protein Ti 99.9 6.5E-24 1.4E-28 163.6 10.5 234 2-273 174-423 (459)
102 KOG0288 WD40 repeat protein Ti 99.9 1.1E-22 2.3E-27 157.0 17.0 202 3-243 219-425 (459)
103 KOG0302 Ribosome Assembly prot 99.9 8.4E-23 1.8E-27 156.0 16.1 161 4-193 212-378 (440)
104 KOG0643 Translation initiation 99.9 8.4E-22 1.8E-26 144.2 20.0 237 2-268 51-318 (327)
105 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.5E-27 166.0 17.2 221 9-273 64-294 (745)
106 KOG2048 WD40 repeat protein [G 99.9 5E-22 1.1E-26 162.0 20.7 231 4-267 26-266 (691)
107 KOG2096 WD40 repeat protein [G 99.9 1.8E-21 4E-26 145.9 21.6 214 2-236 85-309 (420)
108 KOG0267 Microtubule severing p 99.9 5.6E-24 1.2E-28 174.5 8.7 160 2-196 69-229 (825)
109 KOG1446 Histone H3 (Lys4) meth 99.9 2.6E-21 5.6E-26 144.7 21.6 198 2-235 99-303 (311)
110 KOG0296 Angio-associated migra 99.9 1.7E-21 3.7E-26 148.2 19.9 167 58-244 61-229 (399)
111 KOG0270 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 154.0 17.9 201 6-240 246-454 (463)
112 KOG0772 Uncharacterized conser 99.9 7.2E-22 1.6E-26 156.6 18.4 219 4-241 168-400 (641)
113 KOG1332 Vesicle coat complex C 99.9 1.8E-21 4E-26 140.7 16.4 204 2-235 55-286 (299)
114 KOG0301 Phospholipase A2-activ 99.9 1.1E-21 2.4E-26 160.4 17.0 189 3-236 101-289 (745)
115 KOG1273 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 140.7 20.2 221 4-243 24-288 (405)
116 KOG1036 Mitotic spindle checkp 99.9 1.6E-20 3.4E-25 140.1 20.0 154 2-195 12-165 (323)
117 KOG4328 WD40 protein [Function 99.9 4.2E-21 9.1E-26 150.1 17.1 203 4-235 187-399 (498)
118 KOG0647 mRNA export protein (c 99.9 8.2E-21 1.8E-25 141.3 17.3 191 58-269 24-230 (347)
119 KOG0270 WD40 repeat-containing 99.9 6.3E-21 1.4E-25 148.6 17.0 205 16-239 192-408 (463)
120 KOG1408 WD40 repeat protein [F 99.9 4.9E-21 1.1E-25 157.5 17.2 217 2-236 458-714 (1080)
121 KOG1007 WD repeat protein TSSC 99.9 2.3E-20 5E-25 138.2 17.9 212 3-238 63-292 (370)
122 KOG0641 WD40 repeat protein [G 99.9 1.6E-19 3.5E-24 129.5 20.8 201 1-235 134-349 (350)
123 KOG0639 Transducin-like enhanc 99.9 3.9E-21 8.4E-26 152.2 13.7 196 4-234 466-703 (705)
124 KOG0639 Transducin-like enhanc 99.9 2.3E-20 5.1E-25 147.8 17.8 226 6-261 422-657 (705)
125 KOG0294 WD40 repeat-containing 99.9 6.7E-20 1.5E-24 137.2 19.1 200 18-246 3-208 (362)
126 KOG0300 WD40 repeat-containing 99.9 9.9E-21 2.1E-25 142.1 14.5 213 3-239 190-432 (481)
127 KOG0307 Vesicle coat complex C 99.9 2.6E-21 5.7E-26 166.3 12.8 214 5-243 66-292 (1049)
128 KOG1274 WD40 repeat protein [G 99.9 4.2E-19 9.2E-24 149.7 25.2 230 3-268 13-263 (933)
129 KOG0303 Actin-binding protein 99.9 4E-20 8.7E-25 142.3 17.2 208 2-238 80-297 (472)
130 KOG0646 WD40 repeat protein [G 99.9 3.9E-20 8.5E-25 145.0 17.2 177 4-207 124-322 (476)
131 KOG4283 Transcription-coupled 99.8 3.2E-19 7E-24 132.6 18.4 159 3-196 101-279 (397)
132 KOG0303 Actin-binding protein 99.8 3.3E-19 7.2E-24 137.3 19.0 202 56-269 76-286 (472)
133 KOG1274 WD40 repeat protein [G 99.8 3.5E-19 7.5E-24 150.2 20.7 195 5-236 58-263 (933)
134 KOG0649 WD40 repeat protein [G 99.8 2.8E-19 6.2E-24 129.5 17.3 236 6-257 13-257 (325)
135 KOG2055 WD40 repeat protein [G 99.8 4.4E-19 9.5E-24 139.1 19.2 203 3-236 213-418 (514)
136 KOG0307 Vesicle coat complex C 99.8 1.9E-20 4.2E-25 161.0 12.4 206 2-238 115-330 (1049)
137 KOG1036 Mitotic spindle checkp 99.8 7E-19 1.5E-23 131.4 18.0 189 3-210 54-280 (323)
138 KOG1007 WD repeat protein TSSC 99.8 5.6E-19 1.2E-23 130.9 17.0 204 4-237 124-363 (370)
139 KOG4378 Nuclear protein COP1 [ 99.8 2.9E-19 6.3E-24 141.5 15.7 201 8-243 84-288 (673)
140 KOG1334 WD40 repeat protein [G 99.8 5.5E-21 1.2E-25 150.6 5.1 205 4-214 282-487 (559)
141 KOG2445 Nuclear pore complex c 99.8 2.9E-18 6.3E-23 128.2 19.1 210 4-236 14-257 (361)
142 KOG0321 WD40 repeat-containing 99.8 2.1E-18 4.6E-23 140.3 19.4 256 2-273 99-397 (720)
143 KOG1034 Transcriptional repres 99.8 4.5E-18 9.7E-23 128.2 19.6 238 2-271 37-341 (385)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.1E-17 6.8E-22 131.1 25.1 228 5-270 32-282 (300)
145 KOG1539 WD repeat protein [Gen 99.8 7.7E-19 1.7E-23 146.8 15.8 199 4-236 449-649 (910)
146 KOG1539 WD repeat protein [Gen 99.8 9.2E-18 2E-22 140.4 21.7 141 122-264 450-645 (910)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.4E-17 3.1E-22 133.1 21.7 204 5-245 74-289 (300)
148 KOG1587 Cytoplasmic dynein int 99.8 1.2E-17 2.6E-22 139.5 21.8 252 3-269 242-518 (555)
149 KOG2919 Guanine nucleotide-bin 99.8 1.9E-18 4E-23 130.1 15.0 197 13-236 121-328 (406)
150 KOG0268 Sof1-like rRNA process 99.8 2E-19 4.4E-24 137.0 9.3 157 4-194 188-346 (433)
151 KOG1188 WD40 repeat protein [G 99.8 4.2E-18 9.1E-23 129.0 15.8 195 17-242 41-249 (376)
152 KOG1408 WD40 repeat protein [F 99.8 5.8E-18 1.3E-22 139.8 17.9 248 7-271 328-675 (1080)
153 KOG0290 Conserved WD40 repeat- 99.8 4.8E-18 1E-22 126.1 15.3 190 3-220 150-351 (364)
154 KOG2445 Nuclear pore complex c 99.8 1.4E-17 2.9E-22 124.6 17.6 214 3-237 59-320 (361)
155 KOG0321 WD40 repeat-containing 99.8 1.2E-17 2.7E-22 135.9 18.2 235 9-271 55-351 (720)
156 KOG1009 Chromatin assembly com 99.8 2.2E-18 4.7E-23 133.2 13.1 181 2-193 12-195 (434)
157 KOG1063 RNA polymerase II elon 99.8 1.3E-17 2.9E-22 136.9 18.3 218 4-237 362-650 (764)
158 KOG2106 Uncharacterized conser 99.8 7.8E-17 1.7E-21 128.1 21.2 231 3-269 200-479 (626)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-17 2.5E-22 132.5 15.0 232 5-268 36-281 (673)
160 KOG1445 Tumor-specific antigen 99.8 6.3E-18 1.4E-22 137.9 13.8 208 2-237 626-846 (1012)
161 KOG2096 WD40 repeat protein [G 99.8 1E-16 2.2E-21 120.7 19.0 212 5-241 134-366 (420)
162 KOG2048 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 131.3 20.3 199 3-236 110-320 (691)
163 KOG1034 Transcriptional repres 99.8 1.5E-17 3.2E-22 125.5 13.9 216 3-235 135-383 (385)
164 KOG1445 Tumor-specific antigen 99.8 1.6E-17 3.4E-22 135.6 15.0 193 22-237 599-800 (1012)
165 KOG0650 WD40 repeat nucleolar 99.8 9.7E-18 2.1E-22 135.7 13.4 225 3-232 400-732 (733)
166 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-17 5.4E-22 132.3 15.3 219 5-241 296-567 (577)
167 KOG0644 Uncharacterized conser 99.8 3E-18 6.4E-23 143.5 10.2 231 2-271 189-472 (1113)
168 KOG2106 Uncharacterized conser 99.8 5.1E-16 1.1E-20 123.5 21.4 209 3-238 246-480 (626)
169 KOG4328 WD40 protein [Function 99.8 1.5E-16 3.3E-21 124.9 18.1 233 2-265 233-493 (498)
170 KOG2055 WD40 repeat protein [G 99.8 3.9E-16 8.5E-21 122.8 20.1 231 1-266 255-511 (514)
171 KOG2394 WD40 protein DMR-N9 [G 99.7 1.4E-16 3.1E-21 127.5 16.2 153 2-173 218-384 (636)
172 KOG0771 Prolactin regulatory e 99.7 7.3E-17 1.6E-21 125.4 14.0 195 7-236 148-355 (398)
173 PF08662 eIF2A: Eukaryotic tra 99.7 5.9E-16 1.3E-20 114.7 17.1 154 7-197 9-183 (194)
174 KOG0322 G-protein beta subunit 99.7 1.7E-16 3.7E-21 116.5 12.7 169 4-192 151-322 (323)
175 KOG2919 Guanine nucleotide-bin 99.7 4.8E-15 1E-19 112.0 20.5 243 7-270 53-331 (406)
176 KOG2110 Uncharacterized conser 99.7 2.6E-15 5.6E-20 115.1 19.0 157 5-196 89-251 (391)
177 KOG1063 RNA polymerase II elon 99.7 1.1E-15 2.4E-20 125.8 17.8 202 3-235 525-763 (764)
178 KOG0290 Conserved WD40 repeat- 99.7 1.4E-15 3.1E-20 113.1 16.0 209 5-237 98-320 (364)
179 KOG1188 WD40 repeat protein [G 99.7 3.7E-15 8E-20 113.2 15.8 161 4-194 71-243 (376)
180 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-15 5.6E-20 120.9 15.1 188 2-196 343-564 (577)
181 KOG1273 WD40 repeat protein [G 99.7 2E-14 4.4E-19 108.3 17.6 160 64-243 26-191 (405)
182 COG2319 FOG: WD40 repeat [Gene 99.7 7.1E-14 1.5E-18 116.5 23.0 200 2-238 154-362 (466)
183 KOG1523 Actin-related protein 99.7 4.2E-15 9.1E-20 112.0 13.6 206 3-238 10-239 (361)
184 KOG2110 Uncharacterized conser 99.7 8.8E-14 1.9E-18 106.9 20.9 193 6-237 49-250 (391)
185 KOG0322 G-protein beta subunit 99.7 1.1E-14 2.3E-19 107.2 14.9 215 3-234 14-322 (323)
186 KOG1272 WD40-repeat-containing 99.6 5.9E-16 1.3E-20 122.0 8.9 209 6-253 132-341 (545)
187 KOG1009 Chromatin assembly com 99.6 3.8E-15 8.2E-20 115.5 12.8 172 61-243 13-203 (434)
188 KOG1524 WD40 repeat-containing 99.6 1.2E-14 2.5E-19 116.8 15.8 206 17-265 76-284 (737)
189 KOG1538 Uncharacterized conser 99.6 5E-14 1.1E-18 116.2 19.5 240 4-263 13-289 (1081)
190 KOG1310 WD40 repeat protein [G 99.6 3.9E-15 8.4E-20 119.9 12.5 167 3-193 50-231 (758)
191 KOG2321 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 114.4 17.9 239 6-263 54-330 (703)
192 KOG1524 WD40 repeat-containing 99.6 1.1E-14 2.4E-19 117.0 13.9 179 3-231 104-282 (737)
193 COG2319 FOG: WD40 repeat [Gene 99.6 2.6E-13 5.7E-18 113.1 22.8 201 3-239 65-275 (466)
194 KOG2139 WD40 repeat protein [G 99.6 4.2E-13 9.1E-18 103.1 19.1 210 4-235 99-311 (445)
195 KOG3881 Uncharacterized conser 99.6 5.5E-14 1.2E-18 108.7 14.4 169 5-197 150-324 (412)
196 PRK01742 tolB translocation pr 99.6 1.3E-13 2.8E-18 115.4 17.9 189 4-235 204-401 (429)
197 KOG2394 WD40 protein DMR-N9 [G 99.6 3.1E-14 6.7E-19 114.4 13.3 179 17-209 186-379 (636)
198 KOG4227 WD40 repeat protein [G 99.6 3.9E-14 8.6E-19 109.8 12.8 176 50-238 46-228 (609)
199 KOG1240 Protein kinase contain 99.6 1.3E-13 2.8E-18 120.5 16.9 229 3-240 1048-1339(1431)
200 PRK11028 6-phosphogluconolacto 99.6 4.6E-12 9.9E-17 102.8 25.2 201 5-238 36-261 (330)
201 KOG0974 WD-repeat protein WDR6 99.6 8.5E-14 1.8E-18 119.7 15.5 189 17-237 100-290 (967)
202 KOG1517 Guanine nucleotide bin 99.6 7.1E-13 1.5E-17 114.6 20.6 213 4-238 1110-1336(1387)
203 KOG0650 WD40 repeat nucleolar 99.6 2.7E-14 5.8E-19 116.1 11.4 154 2-190 565-732 (733)
204 KOG1310 WD40 repeat protein [G 99.6 1E-14 2.2E-19 117.5 8.8 166 52-235 41-231 (758)
205 KOG0644 Uncharacterized conser 99.6 4.5E-15 9.7E-20 124.8 6.5 113 58-193 187-300 (1113)
206 KOG0649 WD40 repeat protein [G 99.5 1.3E-12 2.9E-17 95.3 17.3 190 4-232 115-313 (325)
207 PRK03629 tolB translocation pr 99.5 4.8E-12 1E-16 105.8 23.1 193 4-236 199-407 (429)
208 KOG2111 Uncharacterized conser 99.5 3.1E-12 6.7E-17 96.7 19.4 177 26-237 75-258 (346)
209 KOG1538 Uncharacterized conser 99.5 1.3E-13 2.9E-18 113.8 12.1 215 2-236 52-294 (1081)
210 PF08662 eIF2A: Eukaryotic tra 99.5 5E-13 1.1E-17 99.1 13.4 116 3-159 59-186 (194)
211 KOG4227 WD40 repeat protein [G 99.5 5E-12 1.1E-16 98.4 18.9 166 4-195 57-227 (609)
212 KOG1517 Guanine nucleotide bin 99.5 9.8E-12 2.1E-16 107.7 22.2 209 5-237 1066-1289(1387)
213 PRK04922 tolB translocation pr 99.5 1E-11 2.2E-16 104.3 22.0 193 4-236 204-412 (433)
214 KOG2111 Uncharacterized conser 99.5 5.7E-12 1.2E-16 95.3 18.0 160 3-196 94-259 (346)
215 KOG1064 RAVE (regulator of V-A 99.5 1.3E-13 2.8E-18 124.6 10.6 193 5-247 2210-2410(2439)
216 KOG1963 WD40 repeat protein [G 99.5 3.4E-12 7.3E-17 108.2 18.2 217 3-236 57-323 (792)
217 PRK05137 tolB translocation pr 99.5 1.5E-11 3.4E-16 103.2 22.1 158 3-198 201-371 (435)
218 KOG1587 Cytoplasmic dynein int 99.5 4.8E-12 1E-16 106.3 18.7 219 3-237 291-518 (555)
219 PRK11028 6-phosphogluconolacto 99.5 1.7E-11 3.7E-16 99.4 21.4 204 6-236 82-305 (330)
220 KOG4547 WD40 repeat-containing 99.5 5.9E-12 1.3E-16 102.5 18.2 193 15-238 4-223 (541)
221 KOG2139 WD40 repeat protein [G 99.5 6E-11 1.3E-15 91.5 22.3 163 4-192 141-308 (445)
222 KOG1523 Actin-related protein 99.5 1.9E-12 4E-17 98.0 13.8 157 61-234 10-175 (361)
223 KOG0771 Prolactin regulatory e 99.5 1.7E-12 3.6E-17 101.5 12.9 163 3-194 186-355 (398)
224 KOG1272 WD40-repeat-containing 99.5 7.9E-14 1.7E-18 110.2 5.1 186 5-233 172-360 (545)
225 PRK05137 tolB translocation pr 99.4 9.4E-11 2E-15 98.5 23.3 158 58-237 198-368 (435)
226 KOG1963 WD40 repeat protein [G 99.4 3.8E-11 8.2E-16 102.0 20.4 207 8-243 165-383 (792)
227 KOG2041 WD40 repeat protein [G 99.4 8.8E-12 1.9E-16 104.0 16.3 223 2-243 13-255 (1189)
228 PRK02889 tolB translocation pr 99.4 7.3E-11 1.6E-15 98.8 21.9 162 3-200 195-367 (427)
229 KOG4497 Uncharacterized conser 99.4 3.2E-11 7E-16 91.9 17.2 214 3-237 91-393 (447)
230 KOG2321 WD40 repeat protein [G 99.4 3.9E-12 8.5E-17 103.3 12.9 167 3-192 175-342 (703)
231 PRK01742 tolB translocation pr 99.4 1.4E-11 3.1E-16 103.1 16.5 166 6-212 250-423 (429)
232 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3E-15 97.3 22.2 156 5-198 191-359 (417)
233 KOG0974 WD-repeat protein WDR6 99.4 6.5E-12 1.4E-16 108.4 13.7 147 10-194 140-289 (967)
234 PRK03629 tolB translocation pr 99.4 5.7E-11 1.2E-15 99.4 19.0 169 6-212 245-425 (429)
235 KOG3881 Uncharacterized conser 99.4 5.4E-11 1.2E-15 92.4 17.1 203 17-242 116-327 (412)
236 PRK04922 tolB translocation pr 99.4 1.9E-10 4.2E-15 96.6 20.2 176 26-239 184-372 (433)
237 PRK02889 tolB translocation pr 99.3 6.6E-10 1.4E-14 93.1 21.3 159 59-239 193-364 (427)
238 PRK04792 tolB translocation pr 99.3 1.2E-09 2.5E-14 92.0 22.6 159 4-200 218-389 (448)
239 KOG1354 Serine/threonine prote 99.3 4.2E-11 9.2E-16 91.7 12.3 224 4-239 85-363 (433)
240 KOG1334 WD40 repeat protein [G 99.3 9.3E-11 2E-15 93.7 14.6 245 2-264 141-463 (559)
241 PRK00178 tolB translocation pr 99.3 1.9E-09 4.1E-14 90.7 22.5 159 4-200 199-370 (430)
242 PRK01029 tolB translocation pr 99.3 2.3E-09 5E-14 89.6 22.3 201 5-239 186-407 (428)
243 TIGR02800 propeller_TolB tol-p 99.3 3.4E-09 7.4E-14 88.9 22.3 157 59-237 187-356 (417)
244 KOG0309 Conserved WD40 repeat- 99.3 3.4E-11 7.4E-16 100.9 9.2 203 3-237 114-341 (1081)
245 KOG1409 Uncharacterized conser 99.2 9.6E-10 2.1E-14 84.4 15.4 201 6-237 27-272 (404)
246 PF02239 Cytochrom_D1: Cytochr 99.2 7.4E-10 1.6E-14 90.3 15.2 223 8-264 41-286 (369)
247 PRK00178 tolB translocation pr 99.2 1.6E-08 3.4E-13 85.2 23.5 158 59-238 196-366 (430)
248 KOG3914 WD repeat protein WDR4 99.2 6.5E-10 1.4E-14 86.9 13.6 165 63-243 64-231 (390)
249 KOG1354 Serine/threonine prote 99.2 1.7E-09 3.7E-14 83.1 15.6 183 5-195 27-246 (433)
250 KOG4497 Uncharacterized conser 99.2 1.3E-10 2.8E-15 88.7 9.2 184 5-235 50-240 (447)
251 KOG4190 Uncharacterized conser 99.2 1.9E-10 4.2E-15 93.7 10.7 193 15-237 746-950 (1034)
252 KOG4547 WD40 repeat-containing 99.2 2.9E-09 6.3E-14 87.1 17.0 145 16-194 70-221 (541)
253 KOG1240 Protein kinase contain 99.2 3.9E-09 8.5E-14 93.4 18.1 178 53-243 1041-1281(1431)
254 KOG4532 WD40-like repeat conta 99.1 3.7E-08 8E-13 73.5 19.8 209 8-249 72-296 (344)
255 PF02239 Cytochrom_D1: Cytochr 99.1 1.7E-08 3.7E-13 82.4 19.7 192 17-243 6-210 (369)
256 KOG4714 Nucleoporin [Nuclear s 99.1 1.2E-09 2.6E-14 80.9 11.2 204 17-265 102-316 (319)
257 PRK01029 tolB translocation pr 99.1 1E-08 2.2E-13 85.7 17.9 163 7-200 234-410 (428)
258 KOG3914 WD repeat protein WDR4 99.1 2E-09 4.4E-14 84.2 12.5 156 7-196 66-226 (390)
259 PRK04792 tolB translocation pr 99.1 9.6E-08 2.1E-12 80.5 22.1 158 59-238 215-385 (448)
260 KOG2315 Predicted translation 99.1 1.6E-08 3.5E-13 82.5 16.2 113 61-197 270-394 (566)
261 KOG0280 Uncharacterized conser 99.1 1.9E-08 4.1E-13 75.9 15.3 117 64-196 124-244 (339)
262 PF00400 WD40: WD domain, G-be 99.1 5E-10 1.1E-14 60.0 5.3 39 153-191 1-39 (39)
263 PLN02919 haloacid dehalogenase 99.1 1.2E-07 2.6E-12 87.4 23.5 215 6-239 626-892 (1057)
264 KOG0280 Uncharacterized conser 99.0 3.4E-08 7.4E-13 74.5 15.5 192 17-237 25-243 (339)
265 KOG2695 WD40 repeat protein [G 99.0 1.4E-09 3.1E-14 83.6 8.2 153 75-249 227-390 (425)
266 KOG2695 WD40 repeat protein [G 99.0 1.3E-09 2.7E-14 83.9 7.6 134 3-162 252-387 (425)
267 COG4946 Uncharacterized protei 99.0 1.7E-07 3.7E-12 75.4 18.7 150 11-198 327-482 (668)
268 PRK04043 tolB translocation pr 99.0 5.6E-07 1.2E-11 75.0 22.7 158 5-201 189-365 (419)
269 PLN02919 haloacid dehalogenase 99.0 1.2E-07 2.7E-12 87.3 19.7 186 7-197 686-892 (1057)
270 KOG1064 RAVE (regulator of V-A 99.0 1.3E-09 2.9E-14 99.5 6.6 146 4-196 2252-2401(2439)
271 PF10282 Lactonase: Lactonase, 98.9 2.7E-06 5.8E-11 69.5 24.2 237 7-271 40-316 (345)
272 KOG1409 Uncharacterized conser 98.9 1E-07 2.2E-12 73.6 14.5 176 4-194 69-271 (404)
273 PF15492 Nbas_N: Neuroblastoma 98.9 5.1E-07 1.1E-11 68.3 17.4 168 7-196 47-262 (282)
274 KOG2315 Predicted translation 98.9 1.1E-06 2.5E-11 72.0 20.6 197 2-237 164-392 (566)
275 KOG4714 Nucleoporin [Nuclear s 98.9 3.2E-08 6.9E-13 73.5 10.1 208 6-236 39-255 (319)
276 PF10282 Lactonase: Lactonase, 98.8 4.9E-06 1.1E-10 68.0 23.4 212 7-236 90-323 (345)
277 PF08450 SGL: SMP-30/Gluconola 98.8 3.5E-06 7.5E-11 65.5 21.5 217 8-264 4-243 (246)
278 COG5170 CDC55 Serine/threonine 98.8 4E-08 8.7E-13 74.9 9.7 182 5-201 87-319 (460)
279 KOG0309 Conserved WD40 repeat- 98.8 3E-08 6.5E-13 83.7 9.0 205 3-237 24-234 (1081)
280 COG4946 Uncharacterized protei 98.8 5E-06 1.1E-10 67.3 21.0 225 12-265 275-507 (668)
281 COG2706 3-carboxymuconate cycl 98.8 1.4E-05 3E-10 62.5 22.5 162 5-194 41-222 (346)
282 PF04762 IKI3: IKI3 family; I 98.8 7.7E-06 1.7E-10 74.5 23.6 213 3-239 75-337 (928)
283 COG2706 3-carboxymuconate cycl 98.7 1.7E-05 3.7E-10 62.0 21.8 200 7-237 92-323 (346)
284 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.9E-05 4.1E-10 63.6 22.5 230 11-271 53-324 (352)
285 PRK04043 tolB translocation pr 98.7 1.9E-06 4E-11 71.9 17.0 155 6-200 235-407 (419)
286 KOG1008 Uncharacterized conser 98.7 6.6E-09 1.4E-13 86.2 2.2 201 6-236 59-276 (783)
287 PF04762 IKI3: IKI3 family; I 98.7 3.7E-06 8.1E-11 76.5 19.6 208 4-235 121-379 (928)
288 KOG2041 WD40 repeat protein [G 98.7 3E-06 6.4E-11 72.0 17.5 219 2-239 70-341 (1189)
289 KOG1912 WD40 repeat protein [G 98.7 1.1E-05 2.5E-10 69.1 20.4 154 3-192 15-185 (1062)
290 COG5170 CDC55 Serine/threonine 98.7 1.9E-06 4.2E-11 66.0 14.1 186 4-195 27-254 (460)
291 PF07433 DUF1513: Protein of u 98.7 1.4E-05 3E-10 62.4 19.1 203 5-242 6-254 (305)
292 KOG2066 Vacuolar assembly/sort 98.6 2.2E-06 4.8E-11 73.4 15.6 142 4-196 40-190 (846)
293 KOG4532 WD40-like repeat conta 98.6 3.4E-06 7.4E-11 63.3 14.6 146 18-196 130-285 (344)
294 KOG0882 Cyclophilin-related pe 98.6 5.5E-07 1.2E-11 72.1 11.1 212 1-244 7-240 (558)
295 PF00400 WD40: WD domain, G-be 98.6 8.6E-08 1.9E-12 51.1 4.7 38 109-149 2-39 (39)
296 TIGR03300 assembly_YfgL outer 98.6 1.8E-05 3.8E-10 65.7 19.4 214 17-270 66-300 (377)
297 TIGR03300 assembly_YfgL outer 98.6 1.1E-05 2.5E-10 66.8 17.9 215 17-271 106-342 (377)
298 KOG2314 Translation initiation 98.6 2.7E-05 5.9E-10 64.3 18.9 139 7-181 214-364 (698)
299 KOG1645 RING-finger-containing 98.6 4.7E-06 1E-10 66.0 14.0 75 3-93 193-269 (463)
300 PF15492 Nbas_N: Neuroblastoma 98.5 0.00018 3.9E-09 54.8 21.4 208 9-240 3-264 (282)
301 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00021 4.5E-09 57.8 23.0 102 26-161 27-146 (352)
302 PF13360 PQQ_2: PQQ-like domai 98.5 2E-05 4.2E-10 60.9 16.8 183 17-240 37-235 (238)
303 KOG1912 WD40 repeat protein [G 98.5 2.9E-06 6.2E-11 72.6 11.7 185 17-239 438-660 (1062)
304 KOG2066 Vacuolar assembly/sort 98.5 8.9E-06 1.9E-10 69.8 14.6 149 63-246 41-198 (846)
305 KOG1832 HIV-1 Vpr-binding prot 98.4 1.5E-07 3.2E-12 81.4 3.5 150 4-196 1102-1258(1516)
306 KOG1920 IkappaB kinase complex 98.4 0.00017 3.6E-09 65.2 21.9 216 4-240 69-327 (1265)
307 KOG4190 Uncharacterized conser 98.4 1.4E-06 3E-11 71.8 8.1 155 111-270 728-909 (1034)
308 PF13360 PQQ_2: PQQ-like domai 98.4 8.9E-05 1.9E-09 57.2 17.1 181 25-240 2-196 (238)
309 PF04053 Coatomer_WDAD: Coatom 98.3 1.7E-05 3.6E-10 66.3 13.3 139 6-193 35-173 (443)
310 KOG3621 WD40 repeat-containing 98.3 9.1E-05 2E-09 63.0 17.3 111 11-152 41-155 (726)
311 KOG1275 PAB-dependent poly(A) 98.3 1.3E-05 2.9E-10 69.9 12.4 180 15-233 146-340 (1118)
312 COG5354 Uncharacterized protei 98.3 8.5E-05 1.8E-09 60.8 15.7 159 60-241 31-216 (561)
313 COG5354 Uncharacterized protei 98.3 0.00039 8.4E-09 57.1 19.1 204 2-237 70-308 (561)
314 PF11768 DUF3312: Protein of u 98.3 1E-05 2.3E-10 67.3 10.5 71 123-196 262-332 (545)
315 KOG2314 Translation initiation 98.3 0.00011 2.4E-09 60.9 16.2 110 63-194 212-335 (698)
316 KOG2114 Vacuolar assembly/sort 98.3 0.00032 6.9E-09 61.2 19.3 198 10-237 30-245 (933)
317 PF11768 DUF3312: Protein of u 98.2 3.1E-05 6.6E-10 64.6 12.6 72 3-92 259-331 (545)
318 KOG1275 PAB-dependent poly(A) 98.2 4.4E-05 9.6E-10 66.7 13.6 162 79-265 154-340 (1118)
319 KOG3621 WD40 repeat-containing 98.2 1.8E-05 4E-10 67.1 10.7 135 59-212 31-178 (726)
320 KOG0882 Cyclophilin-related pe 98.2 3.8E-05 8.3E-10 61.9 11.4 159 5-197 55-235 (558)
321 PF08450 SGL: SMP-30/Gluconola 98.2 0.00089 1.9E-08 52.0 18.8 148 66-238 4-167 (246)
322 smart00320 WD40 WD40 repeats. 98.1 1.2E-05 2.7E-10 41.9 5.4 39 153-191 2-40 (40)
323 PRK11138 outer membrane biogen 98.1 0.00073 1.6E-08 56.4 18.3 214 17-270 121-356 (394)
324 PRK11138 outer membrane biogen 98.1 0.0016 3.5E-08 54.4 20.1 194 17-244 161-362 (394)
325 KOG1920 IkappaB kinase complex 98.0 0.00043 9.3E-09 62.7 15.8 171 4-195 110-324 (1265)
326 PF07433 DUF1513: Protein of u 98.0 0.0041 8.9E-08 48.9 19.1 165 9-199 56-253 (305)
327 KOG2114 Vacuolar assembly/sort 98.0 0.0017 3.7E-08 56.9 17.7 167 16-201 77-252 (933)
328 KOG1008 Uncharacterized conser 97.9 4.4E-06 9.6E-11 70.0 0.7 158 5-193 104-275 (783)
329 PF08596 Lgl_C: Lethal giant l 97.8 0.0032 6.9E-08 52.2 17.2 223 4-243 2-298 (395)
330 KOG1645 RING-finger-containing 97.8 0.00019 4.1E-09 57.2 9.2 84 109-196 184-269 (463)
331 PF06977 SdiA-regulated: SdiA- 97.8 0.0035 7.6E-08 48.3 16.0 165 5-195 23-203 (248)
332 COG0823 TolB Periplasmic compo 97.8 0.0034 7.4E-08 52.5 17.0 156 4-196 193-361 (425)
333 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0021 4.6E-08 42.2 12.2 102 6-146 2-109 (111)
334 KOG3617 WD40 and TPR repeat-co 97.8 0.00044 9.5E-09 60.5 11.5 70 5-90 61-131 (1416)
335 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0089 1.9E-07 45.4 20.5 149 11-195 18-167 (354)
336 PF04841 Vps16_N: Vps16, N-ter 97.7 0.0074 1.6E-07 50.6 17.7 190 2-215 79-270 (410)
337 KOG4640 Anaphase-promoting com 97.7 0.00024 5.2E-09 59.9 8.2 72 123-196 23-95 (665)
338 PRK02888 nitrous-oxide reducta 97.7 0.017 3.8E-07 49.9 19.0 92 142-236 295-405 (635)
339 COG0823 TolB Periplasmic compo 97.6 0.017 3.8E-07 48.4 18.7 156 61-238 192-361 (425)
340 PRK02888 nitrous-oxide reducta 97.6 0.0034 7.4E-08 54.1 14.6 113 62-182 321-450 (635)
341 PF06977 SdiA-regulated: SdiA- 97.6 0.012 2.5E-07 45.5 16.0 186 59-265 19-239 (248)
342 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00014 2.9E-09 63.9 4.8 126 109-242 1092-1221(1516)
343 PF08553 VID27: VID27 cytoplas 97.5 0.0032 6.9E-08 56.2 12.9 140 23-192 501-646 (794)
344 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.013 2.7E-07 38.7 13.5 102 123-230 2-109 (111)
345 KOG2079 Vacuolar assembly/sort 97.4 0.0012 2.6E-08 59.3 9.7 101 17-150 100-202 (1206)
346 smart00320 WD40 WD40 repeats. 97.4 0.00046 1E-08 35.5 4.8 37 110-149 4-40 (40)
347 KOG4640 Anaphase-promoting com 97.4 0.001 2.2E-08 56.3 8.8 93 61-173 20-115 (665)
348 COG3391 Uncharacterized conser 97.4 0.056 1.2E-06 45.0 21.2 200 7-243 77-291 (381)
349 KOG4441 Proteins containing BT 97.4 0.019 4.2E-07 50.2 16.5 220 16-271 285-535 (571)
350 PF08596 Lgl_C: Lethal giant l 97.4 0.02 4.4E-07 47.5 15.4 174 1-196 84-293 (395)
351 KOG2395 Protein involved in va 97.3 0.0032 7E-08 52.4 10.4 143 17-192 347-499 (644)
352 KOG3617 WD40 and TPR repeat-co 97.3 0.00066 1.4E-08 59.5 6.4 108 65-193 19-131 (1416)
353 KOG2444 WD40 repeat protein [G 97.3 0.00097 2.1E-08 49.4 6.3 103 74-193 71-177 (238)
354 PF08553 VID27: VID27 cytoplas 97.3 0.03 6.5E-07 50.2 16.3 70 4-90 578-647 (794)
355 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0011 2.5E-08 36.3 5.0 32 4-37 12-43 (47)
356 PF03178 CPSF_A: CPSF A subuni 97.3 0.014 3E-07 47.3 13.6 136 82-236 62-203 (321)
357 PRK13616 lipoprotein LpqB; Pro 97.2 0.12 2.6E-06 45.5 19.3 66 123-191 450-523 (591)
358 PHA02713 hypothetical protein; 97.2 0.028 6E-07 49.2 15.6 92 144-237 433-535 (557)
359 PF03178 CPSF_A: CPSF A subuni 97.2 0.047 1E-06 44.3 16.1 147 16-193 42-202 (321)
360 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.4E-08 35.8 4.9 34 163-196 11-44 (47)
361 cd00216 PQQ_DH Dehydrogenases 97.1 0.15 3.2E-06 44.1 22.8 199 17-243 62-327 (488)
362 PF06433 Me-amine-dh_H: Methyl 97.1 0.11 2.3E-06 41.8 16.8 158 8-196 40-216 (342)
363 KOG4499 Ca2+-binding protein R 97.1 0.037 8E-07 41.6 12.6 96 65-172 161-262 (310)
364 PF04053 Coatomer_WDAD: Coatom 97.0 0.026 5.7E-07 47.6 13.2 139 5-189 70-219 (443)
365 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.039 8.4E-07 42.1 12.3 111 130-243 20-131 (354)
366 COG3391 Uncharacterized conser 97.0 0.18 3.8E-06 42.1 23.4 115 63-198 75-195 (381)
367 COG3386 Gluconolactonase [Carb 96.9 0.15 3.2E-06 40.9 20.4 221 10-268 31-277 (307)
368 PF02897 Peptidase_S9_N: Proly 96.9 0.23 4.9E-06 42.0 18.8 195 7-235 127-357 (414)
369 KOG2079 Vacuolar assembly/sort 96.8 0.0059 1.3E-07 55.1 8.0 101 72-192 98-202 (1206)
370 PF00780 CNH: CNH domain; Int 96.8 0.18 3.9E-06 39.8 19.9 158 16-198 7-170 (275)
371 COG3490 Uncharacterized protei 96.7 0.19 4.2E-06 39.0 16.8 148 7-185 71-247 (366)
372 cd00216 PQQ_DH Dehydrogenases 96.7 0.37 7.9E-06 41.7 20.6 68 130-197 225-323 (488)
373 COG3386 Gluconolactonase [Carb 96.7 0.25 5.5E-06 39.6 15.9 108 58-178 159-270 (307)
374 PF04841 Vps16_N: Vps16, N-ter 96.6 0.34 7.5E-06 40.8 17.1 31 62-92 81-111 (410)
375 PF00780 CNH: CNH domain; Int 96.6 0.25 5.5E-06 39.0 20.5 209 3-244 35-264 (275)
376 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.021 4.5E-07 47.0 8.9 93 70-184 1-121 (353)
377 PHA03098 kelch-like protein; P 96.4 0.42 9.1E-06 41.9 16.9 66 132-199 389-470 (534)
378 PHA02713 hypothetical protein; 96.4 0.35 7.7E-06 42.5 16.1 136 132-269 351-523 (557)
379 PF14727 PHTB1_N: PTHB1 N-term 96.4 0.47 1E-05 39.8 16.3 161 13-192 34-203 (418)
380 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.056 1.2E-06 44.5 10.4 66 130-197 1-75 (353)
381 PRK13616 lipoprotein LpqB; Pro 96.3 0.48 1E-05 41.9 16.2 102 62-189 350-472 (591)
382 KOG4441 Proteins containing BT 96.3 0.54 1.2E-05 41.4 16.5 182 8-227 327-533 (571)
383 PF14870 PSII_BNR: Photosynthe 96.3 0.2 4.3E-06 40.0 12.5 154 4-190 145-301 (302)
384 PF15390 DUF4613: Domain of un 96.2 0.35 7.6E-06 41.6 14.0 124 60-196 55-189 (671)
385 PF10313 DUF2415: Uncharacteri 96.2 0.025 5.4E-07 30.1 4.8 33 4-36 1-35 (43)
386 TIGR02604 Piru_Ver_Nterm putat 96.0 0.49 1.1E-05 39.3 14.3 60 123-184 126-204 (367)
387 COG3204 Uncharacterized protei 95.9 0.59 1.3E-05 36.6 16.8 166 5-196 87-266 (316)
388 KOG2444 WD40 repeat protein [G 95.8 0.025 5.3E-07 42.2 5.1 66 132-197 69-136 (238)
389 PF07569 Hira: TUP1-like enhan 95.7 0.099 2.1E-06 39.7 8.4 80 11-92 18-97 (219)
390 COG3204 Uncharacterized protei 95.7 0.76 1.6E-05 36.1 18.5 118 59-194 83-211 (316)
391 KOG2377 Uncharacterized conser 95.6 1.1 2.5E-05 37.4 14.5 121 58-195 63-187 (657)
392 PHA02790 Kelch-like protein; P 95.3 1.7 3.7E-05 37.6 15.9 61 132-197 362-427 (480)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.57 1.2E-05 39.2 11.7 87 58-161 304-408 (415)
394 KOG4499 Ca2+-binding protein R 95.2 0.4 8.7E-06 36.3 9.6 108 7-138 161-271 (310)
395 PF12234 Rav1p_C: RAVE protein 95.1 1.3 2.9E-05 39.1 14.1 110 64-192 32-155 (631)
396 COG3490 Uncharacterized protei 95.1 1.2 2.7E-05 34.8 13.4 101 65-182 71-180 (366)
397 KOG2395 Protein involved in va 95.1 0.14 3E-06 43.2 7.7 60 17-91 442-501 (644)
398 PF06433 Me-amine-dh_H: Methyl 95.0 1.6 3.4E-05 35.4 15.2 160 13-197 144-324 (342)
399 KOG1897 Damage-specific DNA bi 94.9 1.9 4.2E-05 39.6 14.4 151 63-235 776-942 (1096)
400 PF14870 PSII_BNR: Photosynthe 94.9 1.3 2.8E-05 35.5 12.4 112 61-196 144-263 (302)
401 KOG2247 WD40 repeat-containing 94.7 0.0042 9E-08 51.4 -1.7 143 9-189 40-184 (615)
402 KOG1916 Nuclear protein, conta 94.5 0.041 9E-07 49.2 3.7 110 130-240 192-328 (1283)
403 PF07569 Hira: TUP1-like enhan 94.5 0.33 7.1E-06 36.9 8.1 67 130-197 19-99 (219)
404 PF10313 DUF2415: Uncharacteri 94.5 0.15 3.2E-06 27.2 4.3 31 164-194 1-34 (43)
405 KOG1900 Nuclear pore complex, 94.3 3 6.5E-05 39.6 14.7 148 21-194 94-273 (1311)
406 PRK13684 Ycf48-like protein; P 94.2 2.6 5.6E-05 34.5 14.9 154 4-192 173-330 (334)
407 PF10647 Gmad1: Lipoprotein Lp 94.2 2.2 4.7E-05 33.4 20.5 161 5-197 25-201 (253)
408 KOG3630 Nuclear pore complex, 94.1 0.59 1.3E-05 43.4 9.8 153 3-180 100-260 (1405)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.0 3.9 8.5E-05 35.9 21.7 48 218-265 473-521 (527)
410 PHA03098 kelch-like protein; P 94.0 2.9 6.3E-05 36.7 14.1 64 132-197 342-418 (534)
411 PF05096 Glu_cyclase_2: Glutam 93.9 2.5 5.3E-05 33.0 15.6 151 8-196 49-206 (264)
412 COG5167 VID27 Protein involved 93.4 2.1 4.4E-05 36.5 11.1 142 17-193 481-632 (776)
413 TIGR03118 PEPCTERM_chp_1 conse 93.4 3.3 7.1E-05 33.0 17.0 169 17-196 101-282 (336)
414 PF12234 Rav1p_C: RAVE protein 93.3 3.1 6.6E-05 37.0 12.5 105 21-150 46-155 (631)
415 PF10168 Nup88: Nuclear pore c 93.2 6.6 0.00014 35.8 16.5 69 123-193 87-179 (717)
416 PF10214 Rrn6: RNA polymerase 93.1 4 8.7E-05 37.6 13.7 126 4-152 146-277 (765)
417 KOG1916 Nuclear protein, conta 92.9 0.16 3.4E-06 45.8 4.3 146 17-193 196-374 (1283)
418 KOG2377 Uncharacterized conser 92.8 1.4 3E-05 36.9 9.1 105 2-137 65-169 (657)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 2 4.3E-05 36.1 10.3 82 163-244 307-407 (415)
420 PF12657 TFIIIC_delta: Transcr 92.7 1.1 2.5E-05 32.6 8.1 31 164-194 86-122 (173)
421 PF05694 SBP56: 56kDa selenium 92.5 5.8 0.00013 33.4 14.5 98 82-195 222-344 (461)
422 PF08728 CRT10: CRT10; InterP 92.0 9.1 0.0002 34.6 16.1 127 62-192 101-245 (717)
423 KOG3630 Nuclear pore complex, 91.7 2.9 6.2E-05 39.3 10.6 109 123-234 103-227 (1405)
424 KOG2280 Vacuolar assembly/sort 91.7 9.7 0.00021 34.3 16.3 33 163-195 216-248 (829)
425 PF05694 SBP56: 56kDa selenium 91.7 7.3 0.00016 32.8 15.8 205 17-243 88-350 (461)
426 PHA02790 Kelch-like protein; P 91.3 4.5 9.7E-05 35.1 11.3 64 132-197 318-388 (480)
427 PF13449 Phytase-like: Esteras 91.3 7.1 0.00015 31.9 16.9 157 4-179 20-230 (326)
428 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.3 2.9E-05 23.1 6.0 40 131-171 1-41 (42)
429 TIGR03074 PQQ_membr_DH membran 90.8 6.7 0.00014 36.1 12.2 64 133-197 260-348 (764)
430 PF08728 CRT10: CRT10; InterP 90.5 13 0.00028 33.7 18.1 162 73-235 49-246 (717)
431 PF02897 Peptidase_S9_N: Proly 90.4 9.9 0.00022 32.1 20.7 204 8-239 174-408 (414)
432 PF14761 HPS3_N: Hermansky-Pud 90.4 6.2 0.00014 29.7 11.6 49 17-79 29-77 (215)
433 PF14761 HPS3_N: Hermansky-Pud 90.1 6.7 0.00014 29.6 12.1 103 73-194 29-164 (215)
434 PF10168 Nup88: Nuclear pore c 89.9 15 0.00033 33.6 18.7 89 62-154 85-182 (717)
435 PF15390 DUF4613: Domain of un 89.9 7.4 0.00016 34.0 10.9 114 123-237 59-188 (671)
436 PF05096 Glu_cyclase_2: Glutam 89.9 8 0.00017 30.3 15.7 114 61-196 44-160 (264)
437 PF11715 Nup160: Nucleoporin N 89.4 13 0.00028 32.8 12.8 28 132-159 229-256 (547)
438 PF07995 GSDH: Glucose / Sorbo 89.2 11 0.00024 30.8 15.7 108 63-185 3-135 (331)
439 PF14583 Pectate_lyase22: Olig 89.1 12 0.00026 31.1 17.7 149 10-192 42-221 (386)
440 PF11715 Nup160: Nucleoporin N 88.7 2.3 5E-05 37.5 7.7 67 131-197 156-252 (547)
441 TIGR02604 Piru_Ver_Nterm putat 88.5 13 0.00029 30.9 13.4 103 63-182 15-142 (367)
442 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.4 17 0.00037 32.0 20.6 201 17-241 70-339 (527)
443 KOG4460 Nuclear pore complex, 88.3 9.6 0.00021 32.9 10.3 72 123-195 106-200 (741)
444 TIGR03074 PQQ_membr_DH membran 87.7 23 0.0005 32.8 20.8 28 219-246 461-488 (764)
445 smart00564 PQQ beta-propeller 87.6 2 4.2E-05 21.0 4.1 25 135-159 8-32 (33)
446 PF11635 Med16: Mediator compl 87.4 24 0.00053 32.6 17.9 126 62-188 181-345 (753)
447 PF12657 TFIIIC_delta: Transcr 86.7 6.3 0.00014 28.7 7.8 30 62-91 86-122 (173)
448 PF12341 DUF3639: Protein of u 86.5 2.2 4.8E-05 20.2 3.5 26 4-32 2-27 (27)
449 COG4257 Vgb Streptogramin lyas 86.4 14 0.00031 29.1 16.5 154 3-200 147-312 (353)
450 PRK13684 Ycf48-like protein; P 86.3 17 0.00037 29.8 16.6 114 61-195 172-289 (334)
451 PLN00033 photosystem II stabil 86.2 19 0.00042 30.3 16.8 112 61-190 280-396 (398)
452 PF07676 PD40: WD40-like Beta 86.1 3.2 7E-05 21.3 4.6 27 5-31 10-38 (39)
453 PF02333 Phytase: Phytase; In 85.9 14 0.0003 30.8 10.0 103 131-236 66-190 (381)
454 PF14781 BBS2_N: Ciliary BBSom 85.7 9.5 0.00021 26.4 14.0 124 7-159 2-133 (136)
455 PF01011 PQQ: PQQ enzyme repea 85.4 3.6 7.8E-05 21.2 4.7 27 135-161 2-28 (38)
456 PF12768 Rax2: Cortical protei 83.7 20 0.00044 28.5 12.0 53 25-92 15-74 (281)
457 PF14583 Pectate_lyase22: Olig 83.7 25 0.00053 29.4 13.9 106 61-184 187-303 (386)
458 PF07676 PD40: WD40-like Beta 83.6 4.4 9.6E-05 20.8 5.3 29 162-190 7-38 (39)
459 KOG4460 Nuclear pore complex, 82.9 31 0.00067 30.0 11.6 76 165-240 105-203 (741)
460 COG5276 Uncharacterized conser 82.1 24 0.00052 28.2 13.4 192 59-269 39-234 (370)
461 PF12768 Rax2: Cortical protei 82.0 17 0.00036 29.0 8.7 62 141-202 14-81 (281)
462 KOG2280 Vacuolar assembly/sort 81.8 41 0.00088 30.6 13.9 30 63-92 85-114 (829)
463 COG5167 VID27 Protein involved 81.3 6.7 0.00015 33.6 6.5 61 17-92 574-634 (776)
464 PF07995 GSDH: Glucose / Sorbo 80.9 29 0.00064 28.4 17.6 75 111-188 246-330 (331)
465 PF10647 Gmad1: Lipoprotein Lp 80.3 26 0.00056 27.4 19.6 108 63-192 25-143 (253)
466 PF14727 PHTB1_N: PTHB1 N-term 79.5 38 0.00082 28.8 19.0 204 16-239 145-364 (418)
467 PRK10115 protease 2; Provision 79.5 51 0.0011 30.3 23.5 111 6-150 129-254 (686)
468 COG4590 ABC-type uncharacteriz 79.0 30 0.00065 29.5 9.4 165 5-196 222-389 (733)
469 KOG2247 WD40 repeat-containing 78.0 0.27 5.8E-06 41.3 -2.3 110 129-240 42-152 (615)
470 KOG1898 Splicing factor 3b, su 77.1 70 0.0015 30.5 15.6 54 142-196 911-965 (1205)
471 KOG2063 Vacuolar assembly/sort 76.1 70 0.0015 30.1 15.5 72 17-92 27-98 (877)
472 PF11635 Med16: Mediator compl 75.5 18 0.00039 33.5 8.1 81 4-85 260-345 (753)
473 KOG1900 Nuclear pore complex, 72.9 99 0.0021 30.3 13.6 149 67-237 84-274 (1311)
474 PF14269 Arylsulfotran_2: Aryl 72.9 48 0.001 26.7 13.2 71 122-193 145-220 (299)
475 KOG1520 Predicted alkaloid syn 72.4 55 0.0012 27.2 11.1 52 138-190 194-247 (376)
476 PF14781 BBS2_N: Ciliary BBSom 72.3 30 0.00064 24.0 10.6 116 68-196 5-128 (136)
477 KOG4659 Uncharacterized conser 72.3 1.1E+02 0.0023 30.4 16.4 42 152-194 753-795 (1899)
478 KOG1983 Tomosyn and related SN 71.9 61 0.0013 31.2 10.7 25 172-196 243-267 (993)
479 PF10214 Rrn6: RNA polymerase 70.8 92 0.002 29.1 21.4 137 59-197 77-236 (765)
480 PF13570 PQQ_3: PQQ-like domai 69.6 11 0.00023 19.5 3.3 20 133-152 21-40 (40)
481 TIGR03606 non_repeat_PQQ dehyd 68.5 78 0.0017 27.3 13.3 104 65-185 33-167 (454)
482 PF08801 Nucleoporin_N: Nup133 68.4 74 0.0016 27.1 12.2 31 164-194 190-220 (422)
483 PLN00033 photosystem II stabil 66.3 81 0.0018 26.7 16.5 109 64-194 241-357 (398)
484 PLN02193 nitrile-specifier pro 66.0 90 0.0019 27.1 17.5 64 132-197 278-355 (470)
485 PF13449 Phytase-like: Esteras 66.0 72 0.0016 26.1 12.4 116 61-182 19-165 (326)
486 KOG1896 mRNA cleavage and poly 66.0 1.4E+02 0.003 29.3 14.5 151 17-193 1047-1213(1366)
487 PF01731 Arylesterase: Arylest 65.6 16 0.00035 23.1 4.0 28 7-34 57-84 (86)
488 PLN02153 epithiospecifier prot 63.8 81 0.0018 25.9 17.2 22 17-38 34-62 (341)
489 COG4257 Vgb Streptogramin lyas 63.6 74 0.0016 25.3 18.1 194 8-237 66-264 (353)
490 PF01436 NHL: NHL repeat; Int 63.4 15 0.00033 17.3 3.7 23 167-189 5-27 (28)
491 KOG3522 Predicted guanine nucl 63.1 90 0.002 29.0 9.3 66 122-192 628-696 (925)
492 KOG3616 Selective LIM binding 63.0 29 0.00064 31.6 6.4 67 122-192 16-82 (1636)
493 COG4590 ABC-type uncharacteriz 62.6 44 0.00095 28.6 7.0 159 61-239 220-390 (733)
494 PF03088 Str_synth: Strictosid 61.7 39 0.00085 21.5 8.9 43 139-182 33-75 (89)
495 KOG0783 Uncharacterized conser 59.5 1.6E+02 0.0034 27.7 12.1 33 2-37 227-259 (1267)
496 PF01731 Arylesterase: Arylest 59.2 43 0.00093 21.2 6.5 49 142-193 35-84 (86)
497 TIGR02171 Fb_sc_TIGR02171 Fibr 58.7 1.1E+02 0.0023 28.9 9.2 54 142-195 328-387 (912)
498 PLN02153 epithiospecifier prot 58.6 1E+02 0.0022 25.3 16.3 21 17-37 87-112 (341)
499 KOG3616 Selective LIM binding 58.1 22 0.00048 32.3 4.9 33 163-195 14-46 (1636)
500 PF14779 BBS1: Ciliary BBSome 57.6 73 0.0016 25.0 7.1 56 134-190 196-255 (257)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-42 Score=259.14 Aligned_cols=236 Identities=19% Similarity=0.327 Sum_probs=199.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
..+|.|++|+|++ ..|++|+.|.++|+||+.+.. +....++|...|.|++|+|||+.||+|. |
T Consensus 115 ~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT---------------p~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 115 GEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET---------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred CCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC---------------cceeecCCccEEEEEEECCCcchhhccccC
Confidence 4689999999975 899999999999999999874 3333389999999999999999999976 9
Q ss_pred CcEEEEEcCCCC--------------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEe
Q 023246 82 ELVYLFEKNMGL--------------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 129 (285)
Q Consensus 82 ~~i~iwd~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 129 (285)
|.|++||..++. ++....+.+++.....++..+.+|+.+ |+|+.|
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrw- 255 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRW- 255 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEE-
Confidence 999999987775 222344555666666788888999987 999995
Q ss_pred cCCCcEEEEecCCCeEEEEecCCCceEE----------------------------------------------------
Q 023246 130 GPNDEYVMSGSDCGHLFIWKKKGGKLVR---------------------------------------------------- 157 (285)
Q Consensus 130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~---------------------------------------------------- 157 (285)
.- ..++++|+.|++|++|+...|.+.+
T Consensus 256 GG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 256 GG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred cC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 43 3488999999999999876654322
Q ss_pred ---------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCccccee
Q 023246 158 ---------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK 209 (285)
Q Consensus 158 ---------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 209 (285)
.+.+|+..|+.+.|+||++++|+++.|+.|++|+-++++ +..+.+|...++.
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence 345778889999999999999999999999999999887 5789999999999
Q ss_pred eccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246 210 ANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 210 ~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
+.| +.+.++++++|.|.+++||++++++. ..+|+.++|+ ||.++++.+-
T Consensus 415 vaw-saDsRLlVS~SkDsTLKvw~V~tkKl---------~~DLpGh~DE--Vf~vDwspDG 463 (480)
T KOG0271|consen 415 VAW-SADSRLLVSGSKDSTLKVWDVRTKKL---------KQDLPGHADE--VFAVDWSPDG 463 (480)
T ss_pred EEe-ccCccEEEEcCCCceEEEEEeeeeee---------cccCCCCCce--EEEEEecCCC
Confidence 987 77889999999999999999999877 5789999999 9999987543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-38 Score=240.22 Aligned_cols=223 Identities=16% Similarity=0.248 Sum_probs=193.8
Q ss_pred ccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 3 SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
...|.++.|+|. +...+|||+.||++++|++.... .+..+ .+|...|..++|+|+|++|++++
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--------------~l~~l-~gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--------------PLQDL-EGHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCc--------------chhhh-hcchhhheeeeecCCCceeeeccc
Confidence 567899999997 45799999999999999998654 22222 89999999999999999999976
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|.+-++||+.++ ..+....+|... |.+++| .++|.++++|+.|..-+|||+++|.++..+.
T Consensus 282 D~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~ 342 (459)
T KOG0272|consen 282 DSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA 342 (459)
T ss_pred ccchhhcccccc----------------hhhHhhcccccc--cceeEe-cCCCceeeccCccchhheeecccCcEEEEec
Confidence 999999999988 677777899866 999998 9999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+|..+|.+|+|+|+|..++||+.|++++|||++... +.+++.|...+..+......+.++++++.|+++++|.-.+.+.
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 999999999999999999999999999999998775 5778888888766655445677999999999999999888766
Q ss_pred ceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246 240 LAYRERRYNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
+ ..+++|++. |+.++.+.+.
T Consensus 423 ~---------ksLaGHe~k--V~s~Dis~d~ 442 (459)
T KOG0272|consen 423 L---------KSLAGHEGK--VISLDISPDS 442 (459)
T ss_pred c---------hhhcCCccc--eEEEEeccCC
Confidence 4 567777776 7777766544
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-36 Score=248.71 Aligned_cols=202 Identities=17% Similarity=0.297 Sum_probs=182.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+.++|..++|+|++ ++|++++.|+++|+|.+.+.. +.... .+|..+|+.+.|+|-|.+||+++
T Consensus 450 H~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred CCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence 35899999999986 999999999999999999886 33333 79999999999999999999965
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|++.++|..... .+.+.|.+|-+. +.|+.| +|+..|+++|+.|.+|++||..+|..++.|.
T Consensus 514 D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 514 DQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred CceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 999999999887 788999999988 999998 9999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+|.++|.+++|+|+|++|++|+.|+.|++||+.++. +.++.+|.+.+.++.. +.++..+++++.|.+|++||+.....
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsF-S~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSF-SRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEE-ecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999999998876 5788889666655544 67888999999999999999876543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=231.74 Aligned_cols=205 Identities=16% Similarity=0.208 Sum_probs=184.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEec
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~ 80 (285)
..||..+.|++++ ..|+||+.+|.+++|+..... .... +.+|...|.++.|+|. +.-+|+++
T Consensus 175 ~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~--------------~~~~-l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 175 TRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCN--------------LLQT-LRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred CCcceeeEeecCC-CeEEEeecCCceeEeecCCcc--------------eeEE-EeccccceeeEEEccCCCccceeeec
Confidence 3589999999985 999999999999999998775 2222 3899999999999997 45788865
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
||++++|++.+. .++..+.+|... |..++| +|+|++|+|++.|.+-++||+++++.+...
T Consensus 239 ~Dgtvklw~~~~e----------------~~l~~l~gH~~R--Vs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE----------------TPLQDLEGHLAR--VSRVAF-HPSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred cCCceeeeccCCC----------------cchhhhhcchhh--heeeee-cCCCceeeecccccchhhcccccchhhHhh
Confidence 999999999987 688999999976 999998 999999999999999999999999999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
.+|...|.+++|.|+|..++||+.|..-++||++++. +..+.+|..+++.++| ++++..+++|+.|++++|||++..+
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF-SPNGYHLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE-CCCceEEeecCCCCcEEEeeecccc
Confidence 9999999999999999999999999999999999886 5778889999999877 6677789999999999999999887
Q ss_pred cceeE
Q 023246 239 TLAYR 243 (285)
Q Consensus 239 ~~~~~ 243 (285)
.+..+
T Consensus 379 ~ly~i 383 (459)
T KOG0272|consen 379 ELYTI 383 (459)
T ss_pred cceec
Confidence 76655
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=225.74 Aligned_cols=212 Identities=18% Similarity=0.320 Sum_probs=166.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLI 77 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~ 77 (285)
+.-|.|++|+||+ ..||+|+.||+|++||..+++. .-..+.+|...|++++|.| ..++||
T Consensus 157 ~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~--------------~g~~l~gH~K~It~Lawep~hl~p~~r~la 221 (480)
T KOG0271|consen 157 KNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQ--------------IGRALRGHKKWITALAWEPLHLVPPCRRLA 221 (480)
T ss_pred ccEEEEEEECCCc-chhhccccCCeEEEecCCCCCc--------------ccccccCcccceeEEeecccccCCCcccee
Confidence 4578999999986 8999999999999999999873 2223356666666666654 234555
Q ss_pred Eec-CCcEEEEEcCCCC-------------------------CCCCCCCCCcc---------------------------
Q 023246 78 SYN-DELVYLFEKNMGL-------------------------GPSPLSLSPED--------------------------- 104 (285)
Q Consensus 78 s~~-d~~i~iwd~~~~~-------------------------~~~~~~~~~~~--------------------------- 104 (285)
+++ ||.|+|||+..+. ++...+++.+.
T Consensus 222 s~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred cccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 543 6666666665432 00000000000
Q ss_pred ----------------------------------------------------ccCCCCceEeecccCceeeeeEEEecCC
Q 023246 105 ----------------------------------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPN 132 (285)
Q Consensus 105 ----------------------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 132 (285)
....+++..+.+|... |+.+.| +|+
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l--Vn~V~f-SPd 378 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL--VNHVSF-SPD 378 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh--eeeEEE-CCC
Confidence 2222345566788866 999998 999
Q ss_pred CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeec
Q 023246 133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 211 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 211 (285)
++++++++.|..|++||.++|+.+.+|.+|-+.|+.++|+.|.++|++|+.|.++++|++++.++ ..+++|...++...
T Consensus 379 ~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 379 GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999986 67999999999998
Q ss_pred cccCCCceEEEeCCCCeEEEEE
Q 023246 212 KQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 212 ~~~~~~~~~~~~s~d~~i~vwd 233 (285)
| ++++..++++..|..+++|.
T Consensus 459 w-spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 W-SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred e-cCCCceeecCCCceEEEeec
Confidence 7 66777899999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-34 Score=208.21 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=173.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...|+.+..++++ +++++++.|+++++||+.+++ ....+ .+|...|.+++|+++.+.+++|+ |
T Consensus 63 sH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~--------------~t~~f-~GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 63 SHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE--------------STRRF-VGHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred ceEecceEEccCC-ceEEeccccceEEEEEecCCc--------------EEEEE-EecCCceEEEEecCCCceeecCCCc
Confidence 4568899999986 999999999999999999986 33333 79999999999999999999986 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.+|++|++... +..++..+.....|.++.| +|+ ..+|++++.|++|++||+++.+....+
T Consensus 127 kTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf-sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 127 KTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF-SPNESNPIIVSASWDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred ceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE-cCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence 99999999875 4444444421244999998 887 789999999999999999999999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.+|++.++.++++|||..+++|+.||.+.+||++.++.....++...+..+ ++.+.++.++...+..|+|||+..+..
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl--~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL--CFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE--EecCCceeEeeccCCceEEEeccchhh
Confidence 999999999999999999999999999999999988765555566666555 455667778888888899999999877
Q ss_pred ceeEe
Q 023246 240 LAYRE 244 (285)
Q Consensus 240 ~~~~~ 244 (285)
+..+.
T Consensus 267 v~~l~ 271 (315)
T KOG0279|consen 267 VEELK 271 (315)
T ss_pred hhhcc
Confidence 65553
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-33 Score=204.49 Aligned_cols=236 Identities=16% Similarity=0.236 Sum_probs=192.2
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+.+.|+.++..+.++.++++++.|.++.+|++.... .+...+++. +.+|...|..+..+++|++.++++
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----~~~G~~~r~------~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----IKYGVPVRR------LTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----cccCceeee------eeccceEecceEEccCCceEEeccc
Confidence 356899999999888999999999999999998653 122223332 388999999999999999999965
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|+++++||+.++ +..+.|.+|... |.+++| +++.+.+++|+.|.+|++|+.. +.+..++.
T Consensus 84 D~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 84 DGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred cceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 999999999998 788999999977 999998 9999999999999999999987 66776766
Q ss_pred cc--cccceEeEEcCC--CCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 161 GD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 161 ~h--~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
.+ +..|.++.|+|+ ..++++++.|++|++||+++.++ ..+.+|...+... ..++++.+.++|..||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~-~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV-TVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE-EECCCCCEEecCCCCceEEEEEcc
Confidence 44 789999999998 67899999999999999999886 4566666655444 457788899999999999999999
Q ss_pred ccccceeE---------eeeccccccCCCCCcCeEEEeecCCC
Q 023246 236 RRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 236 ~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.++.+..+ .++|+...+...-++ .|-+++.+.+
T Consensus 223 ~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 223 EGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred CCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence 98776665 355555555443332 2666666654
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-33 Score=218.05 Aligned_cols=218 Identities=17% Similarity=0.257 Sum_probs=184.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
+..|++++|+.+| .+||+|+.||.++||+..... ... +..|.++|.++.|+..|.+|++++ |
T Consensus 235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~t-l~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------IST-LGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred cCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhh-hhccCCceEEEEEcCCCCEEEeccCC
Confidence 5689999999986 999999999999999987542 222 278999999999999999999965 9
Q ss_pred CcEEEEEcCCCC-------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 82 ELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 82 ~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
+++.+||..++. +.....+....+....++.++.+|.++ |.++.| +|.+.+|
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~LL 374 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSLL 374 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCceE
Confidence 999999997664 111112223335555678899999988 999997 9999999
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC---------CeEEEEecCCcEEEEcCCCCC-CCCCCCCccc
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 206 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~ 206 (285)
+++++|+++++|.+......+.+.+|...|..+.|+|++ ..+++++.|++|++||+..+. +..+..|..+
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence 999999999999999999999999999999999999975 369999999999999997665 6888889999
Q ss_pred ceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246 207 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
++.+.. +++++++++|+.||.|++|+.+.++..+
T Consensus 455 Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 455 VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred eEEEEe-cCCCcEEEecCCCCeeEeccccchheeE
Confidence 988865 6778899999999999999999886654
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=200.54 Aligned_cols=215 Identities=15% Similarity=0.170 Sum_probs=180.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
.++|.++.|++|. +++++++.||.+.|||..+... ...+ .-....|..++|+|.|+++|+|. |
T Consensus 55 ~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK--------------~hai-pl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 55 LNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNK--------------VHAI-PLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred ccceeeeEecCCc-CeEEeeccCCeEEEEEcccccc--------------eeEE-ecCceeEEEEEECCCCCeEEecCcC
Confidence 4689999999985 9999999999999999987652 2222 33456899999999999999965 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+...||++.+... ....+..+.+.+|+.- +.++.| - +...|++++.|.+..+||+++++.+..+.+
T Consensus 119 N~Csiy~ls~~d~----------~g~~~v~r~l~gHtgy--lScC~f-~-dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 119 NKCSIYPLSTRDA----------EGNVRVSRELAGHTGY--LSCCRF-L-DDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ceeEEEecccccc----------cccceeeeeecCccce--eEEEEE-c-CCCceEecCCCceEEEEEcccceEEEEecC
Confidence 9999999985410 1112355678899965 999998 3 477899999999999999999999999999
Q ss_pred ccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 162 DRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 162 h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
|.+.|.+++++| +++.+++|+-|+..++||++.+. .++|.+|...+..+.. .+.+..+++|+.|++.++||++..+.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f-fP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF-FPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE-ccCCCeeeecCCCceeEEEeecCCcE
Confidence 999999999999 89999999999999999998775 6889999998877754 56667899999999999999999888
Q ss_pred ceeEeeecc
Q 023246 240 LAYRERRYN 248 (285)
Q Consensus 240 ~~~~~~~~~ 248 (285)
+..+.+...
T Consensus 264 ~a~ys~~~~ 272 (343)
T KOG0286|consen 264 LAVYSHDSI 272 (343)
T ss_pred EeeeccCcc
Confidence 877655443
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-33 Score=230.18 Aligned_cols=245 Identities=16% Similarity=0.197 Sum_probs=205.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccC--------CcC---------CCCCcccccccccCCCCCcceEE
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--------PIS---------SDTPVDTFCPRHLIGKNNIHITG 66 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~h~~~v~~ 66 (285)
..++|..|++++ .+||.|..|-.|++|.+...++.. ... ............ +.+|.++|..
T Consensus 379 ~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVyg 456 (707)
T KOG0263|consen 379 QGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVYG 456 (707)
T ss_pred CcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCceee
Confidence 468999999986 799999999999999998432111 000 000111111222 4799999999
Q ss_pred EEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeE
Q 023246 67 LAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 145 (285)
Q Consensus 67 i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 145 (285)
+.|+|+.++|++++ |+++++|.+.+. .++-.+++|..+ |..+.| +|.|-|++|++.|++.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQTA 517 (707)
T ss_pred eeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCcee
Confidence 99999999999975 999999999988 788999999977 999998 9999999999999999
Q ss_pred EEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeC
Q 023246 146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT 224 (285)
Q Consensus 146 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s 224 (285)
++|.....++++.+.+|.+.|.|+.|+|+..|++|||.|.++|+||..++. ++.+.+|..++..+.. ++.++++++|+
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~-Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF-SPCGRYLASGD 596 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-cCCCceEeecc
Confidence 999999999999999999999999999999999999999999999998776 5778899999877765 56888999999
Q ss_pred CCCeEEEEEecccccc----------eeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246 225 PDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 225 ~d~~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
.|+.|.+||+..+..+ ..+.++.++..++++..++.|-++++..-.
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999986443 345788889999999888889888876443
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=215.07 Aligned_cols=202 Identities=17% Similarity=0.320 Sum_probs=176.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
+.+|..+.|.|+| +.|++|+..|.+.+|+..+- ....++..|..+|+++.|++++.++++|+ +
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 5689999999986 99999999999999998543 44556689999999999999999999986 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|.|++|+.... .++.+..|. .. |++++| +|+...|+++++||+|+|||....+....+.
T Consensus 160 G~iKyWqpnmn-----------------nVk~~~ahh~ea--IRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 160 GMIKYWQPNMN-----------------NVKIIQAHHAEA--IRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred ceEEecccchh-----------------hhHHhhHhhhhh--hheecc-CCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 99999998765 566666665 44 999998 9999999999999999999999888888999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+|...|.+++|+|....+++++.|..|++||++++. +.++..|...+..+.+... ..+|+++|.|..++++|++.-+.
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH
Confidence 999999999999999999999999999999998875 6888889988888877444 47999999999999999995443
Q ss_pred ce
Q 023246 240 LA 241 (285)
Q Consensus 240 ~~ 241 (285)
+.
T Consensus 299 l~ 300 (464)
T KOG0284|consen 299 LF 300 (464)
T ss_pred HH
Confidence 33
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=197.82 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=178.5
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 80 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 80 (285)
|+..-|+.++|+|.+ +++|+|+-|+...||++.+.+.... ......+.+|++-+.++.|-+|+++|.++.
T Consensus 95 l~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~---------~~v~r~l~gHtgylScC~f~dD~~ilT~SG 164 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEGN---------VRVSRELAGHTGYLSCCRFLDDNHILTGSG 164 (343)
T ss_pred cCceeEEEEEECCCC-CeEEecCcCceeEEEeccccccccc---------ceeeeeecCccceeEEEEEcCCCceEecCC
Confidence 567789999999975 9999999999999999986532111 023333489999999999999888888888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|.+..+||++++ +.+..|.+|... |.++++ +| +++.+++|+-|+..++||++.+.++.+|
T Consensus 165 D~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 165 DMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred CceEEEEEcccc----------------eEEEEecCCccc--EEEEec-CCCCCCeEEecccccceeeeeccCcceeEee
Confidence 999999999999 799999999988 999997 88 9999999999999999999999999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
.+|.+.|+++.|.|+|.-|++|+.|++.|+||++.... ..+. ....++..+ ..+..++++++|..|..+.+||.-.
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv-~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV-AFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE-EEcccccEEEeeecCCceeEeeccc
Confidence 99999999999999999999999999999999988653 2222 112233333 3456788999999999999999887
Q ss_pred cccceeE
Q 023246 237 RQTLAYR 243 (285)
Q Consensus 237 ~~~~~~~ 243 (285)
++....+
T Consensus 305 ~e~vg~L 311 (343)
T KOG0286|consen 305 GERVGVL 311 (343)
T ss_pred cceEEEe
Confidence 7665443
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=221.33 Aligned_cols=235 Identities=17% Similarity=0.304 Sum_probs=192.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...|.++.|+|++ ..+++++.|+.+++|+....+. . ....+ .+|...|.+++|+|+++++++++ |
T Consensus 159 ~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~-------~-----~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS-------N-----LLREL-SGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred cCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc-------h-----hhccc-cccccceeeeEECCCCcEEEEecCC
Confidence 4678899999986 7899999999999999965541 0 11222 78999999999999999999965 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|+|||+.... ..++++.+|... |++++| +|.++++++|+.|++|++||+++++++..+.+
T Consensus 225 ~tiriwd~~~~~---------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~ 286 (456)
T KOG0266|consen 225 KTLRIWDLKDDG---------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG 286 (456)
T ss_pred ceEEEeeccCCC---------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence 999999993321 688999999977 999998 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCccc-ceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
|.+.|++++|++++++|++++.|+.|++||+.++. ...+.++... .+......++..++++++.|+.+++||+++.
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999998887 3455555555 5555566778889999999999999999976
Q ss_pred ccceeEe-------------eeccccccCCCCCcCeEEEeecCCC
Q 023246 238 QTLAYRE-------------RRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 238 ~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
..+.... ..+.+..+.++..++.|++++...+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 5443331 1233444555566777777777654
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=205.04 Aligned_cols=230 Identities=17% Similarity=0.294 Sum_probs=185.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
.+-|.|+++.|-+ ..|++|+.|++++|||+.++++ ...+.+|...|..+++|+-..|++++ .|
T Consensus 151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L---------------kltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL---------------KLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE---------------EEeecchhheeeeeeecccCceEEEecCC
Confidence 4678999999965 8999999999999999999963 33338899999999999999998885 69
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|+.||+... +.++.+.+|-.. |.+++. .|.-..|++|+.|.++++||+++...+..+.+
T Consensus 215 k~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 215 KQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred CeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEEecC
Confidence 99999999988 789999999977 999997 89999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|..+|..+.+.|....+++|+.|++|++||++.++ ..++..|...+.++.. .+....+++++.| .++-|++..+..+
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l-hP~e~~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL-HPKENLFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec-CCchhhhhccCCc-cceeccCCccchh
Confidence 99999999999999999999999999999998887 4556656666555432 2233345555555 6799999887665
Q ss_pred eeE-eeecccc--------ccCCCCCcCeEEEeecCCC
Q 023246 241 AYR-ERRYNAA--------DFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 241 ~~~-~~~~~~~--------~~~~~~~~~~v~~~~~~~~ 269 (285)
.-+ .+..... .+..+.+.|.+++++..+|
T Consensus 354 ~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred hccccccceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence 543 1111122 2344455566677766665
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-30 Score=188.64 Aligned_cols=205 Identities=18% Similarity=0.298 Sum_probs=171.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++++|..++|+|-.+.+||+|+.|+.|+||+...+... .|...+-.+|+..|++++|+|.|++|++++
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~-----------~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW-----------TCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE-----------EEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 45689999999952579999999999999999853310 144455578999999999999999999976
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC---ceEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVR 157 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~ 157 (285)
|.++.||.-..+ .++++.++.+|.+. |.+++| +++|++|++++.|..|-+|.+..+ +++.
T Consensus 82 D~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfec~a 144 (312)
T KOG0645|consen 82 DATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFECIA 144 (312)
T ss_pred cceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence 999999987654 34688999999988 999996 999999999999999999998743 4788
Q ss_pred EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC-CC---CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PT---DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.++.|.+.|..+.|+|....|++++.|.+|++|.-. .. ..+++.+|...+-.+.. .+.+..+++++.|++++||.
T Consensus 145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F-~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF-DNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe-cCCCceEEEecCCcceEeee
Confidence 899999999999999999999999999999999875 33 25778888877666543 33355789999999999998
Q ss_pred ec
Q 023246 234 LQ 235 (285)
Q Consensus 234 ~~ 235 (285)
..
T Consensus 224 ~~ 225 (312)
T KOG0645|consen 224 LY 225 (312)
T ss_pred ec
Confidence 54
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=219.64 Aligned_cols=221 Identities=19% Similarity=0.342 Sum_probs=181.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
...|.+++|+|++ .++++++.|++++|||+... . +...+ .+|...|++++|+|+++++++|+
T Consensus 203 ~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~--------------~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 203 TRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR--------------NLKTL-KGHSTYVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred ccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe--------------EEEEe-cCCCCceEEEEecCCCCEEEEecC
Confidence 4579999999986 89999999999999999433 3 44444 79999999999999999999975
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc--eEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRL 158 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~ 158 (285)
|++|+|||+.++ ++...+.+|... |.+++| +++++++++++.|+.|++||+.+++ ++..
T Consensus 267 D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 267 DGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred CCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE-CCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 999999999987 799999999987 999998 9999999999999999999999998 5677
Q ss_pred Eeccccc--ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceee--ccccCCCceEEEeCCCCeEEEEE
Q 023246 159 MVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKA--NKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 159 ~~~h~~~--v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
+..+... +++++|+|++.+++++..|+.+++||++... ...+.+|...+.+. ........++++++.|+.|++|+
T Consensus 328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 7766655 9999999999999999999999999998665 45666666543222 11233577999999999999999
Q ss_pred ecccccceeEeee--ccccccCCCCCc
Q 023246 234 LQRRQTLAYRERR--YNAADFESDEEE 258 (285)
Q Consensus 234 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 258 (285)
+.++..+..+... .....+..+..+
T Consensus 408 ~~s~~~~~~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 408 SSSGGILQRLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred CCccchhhhhcCCCCCceeccccCCCc
Confidence 9988777666433 333344444444
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1.7e-30 Score=187.56 Aligned_cols=203 Identities=14% Similarity=0.275 Sum_probs=165.9
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
+.+.|+++.|..+| +.++||+.||+++|||++... +.+. ..|..+|+++..+|+...|+++ .
T Consensus 82 h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~qR~--~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------CQRN--YQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred cCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------cchh--ccCCCCcceEEecCCcceEEeecC
Confidence 35679999999986 999999999999999999754 3333 3567899999999987777776 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC------c
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------K 154 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------~ 154 (285)
+|.|++||+... .+...+..... ..|.++.. .|+|.+++.+...|..++|++-+. +
T Consensus 145 sg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 145 SGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred CCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 999999999876 34444332222 45999997 999999999999999999998654 3
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 232 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw 232 (285)
++..++.|++.+..+.++|++++|++++.|++++||+.+.. ++ ..+.+|...+-... .+.++++++++++|+.+++|
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~-FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA-FSADGEYLVTASSDHTARLW 285 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee-eccCccEEEecCCCCceeec
Confidence 56778899999999999999999999999999999999887 32 45666766654332 46688899999999999999
Q ss_pred Eecccccc
Q 023246 233 RLQRRQTL 240 (285)
Q Consensus 233 d~~~~~~~ 240 (285)
++..++.+
T Consensus 286 ~~~~~k~v 293 (311)
T KOG0315|consen 286 DLSAGKEV 293 (311)
T ss_pred ccccCcee
Confidence 99988755
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=1.2e-30 Score=203.59 Aligned_cols=213 Identities=13% Similarity=0.209 Sum_probs=174.0
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCC---------------------cccc-----cccc
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP---------------------VDTF-----CPRH 55 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------------------~~~~-----~~~~ 55 (285)
+++||.++.|+.+| ++|++++.|+++.+||..+++....+..... +..+ .+..
T Consensus 275 HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~ 353 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK 353 (524)
T ss_pred cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence 58999999999986 9999999999999999988765333221110 0000 1222
Q ss_pred cCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 56 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 56 ~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+.+|.++|.++.|.|.|.+|++++ |++++||..... ...+.+..|... |..+.| +|.+.
T Consensus 354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~w-sp~g~ 414 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIKW-SPTGP 414 (524)
T ss_pred eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEee-cCCCC
Confidence 3368999999999999999999975 999999998776 688889999865 999985 77653
Q ss_pred ---------EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcc
Q 023246 135 ---------YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE 205 (285)
Q Consensus 135 ---------~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 205 (285)
.+++++.|++|++||+..+.+++.|..|+.+|++++|+|+++++|+|+.||.|.+|+.+.+++..-.....
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 68999999999999999999999999999999999999999999999999999999999998754444555
Q ss_pred cceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 206 KIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
.++.+.|... +.++.....|+.+.+.|++
T Consensus 495 ~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAA-GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence 5777766444 4677778889999999986
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=1.2e-31 Score=205.63 Aligned_cols=203 Identities=13% Similarity=0.222 Sum_probs=179.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
..+|.++.|++++ .++++|..+|.|++|+..-.. +..+...|...|++++|+|....|+++ .|
T Consensus 138 Ds~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdD 201 (464)
T KOG0284|consen 138 DSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDD 201 (464)
T ss_pred cccceeEEEccCC-CEEEEcCCCceEEecccchhh---------------hHHhhHhhhhhhheeccCCCCceeEEecCC
Confidence 3579999999975 999999999999999987542 333335566999999999988888886 59
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|+|||.... +....+.+|.-. |.++.| +|...++++++.|..|++||.++++++.++.+
T Consensus 202 g~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-HP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 202 GTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-HPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred CeEEEEeccCC----------------chhheeccCCCC--cceecc-CCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 99999999887 677888999977 999995 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|...|..+.|+|++++|+|+|.|..++++|++.. ++..+.+|...+.++.|......++.+++.||.|..|.+...+.+
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 9999999999999999999999999999999955 478899999999999888778889999999999999998844333
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=2.4e-31 Score=200.67 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=169.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
.+.|.|+.|.. ..+++|++|.+|+|||..+++ +...+ .+|...|..+.|+.. +++++ .|
T Consensus 237 tGSVLCLqyd~---rviisGSSDsTvrvWDv~tge--------------~l~tl-ihHceaVLhlrf~ng--~mvtcSkD 296 (499)
T KOG0281|consen 237 TGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE--------------PLNTL-IHHCEAVLHLRFSNG--YMVTCSKD 296 (499)
T ss_pred CCcEEeeeccc---eEEEecCCCceEEEEeccCCc--------------hhhHH-hhhcceeEEEEEeCC--EEEEecCC
Confidence 35566666654 477777777777777777776 33333 567777777777643 55554 47
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.++.+||+..+. ...+.+.+.+|... |+.+.| +.+++++++.|.+|++|++.+++.++++.+
T Consensus 297 rsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 297 RSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc---ccceEEEecCCceEEEEeccceeeehhhhc
Confidence 777777776541 12355677899977 999987 567999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|+..|.|+.+ .++++++|+.|.+|++||+..+. +..+.+|..-+.++-. ++..+++|..||+|++||+.....+
T Consensus 359 HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceEEEEecccccCC
Confidence 9999999887 57899999999999999998886 5678888877765532 4458999999999999999876544
Q ss_pred e-----------------eEeeeccccccCCCCCcCeEEEeecCCCCCCCCCC
Q 023246 241 A-----------------YRERRYNAADFESDEEEGETYLLGFSDSDASSEGG 276 (285)
Q Consensus 241 ~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 276 (285)
. .+....+...+.+...+..+.+++|.++..+..+.
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~~~ 486 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAAEE 486 (499)
T ss_pred cccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcccccc
Confidence 1 12222233333333334449999999987765554
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=208.13 Aligned_cols=202 Identities=16% Similarity=0.335 Sum_probs=166.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
.++++++++||| .++|||+.||.|+|||..++- |..++ ..|+..|+.++|+..|+.+++++ ||
T Consensus 351 ~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--------------C~vTF-teHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 351 DRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--------------CFVTF-TEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred cceeeEEECCCC-cEEEeccCCCcEEEEeccCce--------------EEEEe-ccCCCceEEEEEEecCCEEEEeecCC
Confidence 478999999986 899999999999999999885 66666 88999999999999999888865 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~ 161 (285)
+|+.||+... +..++|..... ....+++. +|.|..+.+|+.|. .|++|++++|+.+-.+.+
T Consensus 415 tVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 415 TVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred eEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 9999999877 56677765432 34678886 89999999999876 599999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
|.++|.+++|+|.+..|++++.|++||+||+-.. ...++. ....+..+.. .++++-++.++-||+|.+||.....+
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf-rPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF-RPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE-cCCCCeEEEEEecceEEEEEhhhcee
Confidence 9999999999999999999999999999998433 343343 3334444433 44566778888899999999877655
Q ss_pred ce
Q 023246 240 LA 241 (285)
Q Consensus 240 ~~ 241 (285)
..
T Consensus 555 ~~ 556 (893)
T KOG0291|consen 555 VG 556 (893)
T ss_pred ec
Confidence 43
No 22
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.3e-29 Score=206.79 Aligned_cols=213 Identities=10% Similarity=0.126 Sum_probs=161.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-c
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~ 80 (285)
.++|++++|+|.++++|++|+.|++|++||+.++..... .. .+...+.+|...|.+++|+|++ .+|+++ .
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC------cceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 568999999994458999999999999999986532110 00 1112237899999999999986 588885 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|++|+|||+.++ +....+.+|... |.+++| +|++.+|++++.|+.|++||+++++.+..+.
T Consensus 147 DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 147 DMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred CCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 999999999887 577788888866 999997 9999999999999999999999999999999
Q ss_pred ccccc-ceEeEEcCCCCeEEEEe----cCCcEEEEcCCCCC-C-CCCCCCcccceeeccccCCCceEEEeC-CCCeEEEE
Q 023246 161 GDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-F-PPLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVL 232 (285)
Q Consensus 161 ~h~~~-v~~~~~~p~~~~l~t~~----~d~~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~i~vw 232 (285)
+|.+. +..+.|.+++..+++++ .|+.|++||++... . .....+............+..++++++ .|+.|++|
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 88765 45678999888877765 47899999997643 2 222212222222222344555666665 59999999
Q ss_pred Eeccccccee
Q 023246 233 RLQRRQTLAY 242 (285)
Q Consensus 233 d~~~~~~~~~ 242 (285)
|+..++....
T Consensus 288 dl~~~~~~~~ 297 (493)
T PTZ00421 288 ELMNERLTFC 297 (493)
T ss_pred EeeCCceEEE
Confidence 9998765543
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=4e-29 Score=180.46 Aligned_cols=222 Identities=15% Similarity=0.205 Sum_probs=178.4
Q ss_pred CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCC
Q 023246 15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLG 94 (285)
Q Consensus 15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~ 94 (285)
.+-+|++++.|.+||+|...+|. |..++ ......|+.+...|++++||++....|++||+++..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~--------------C~rTi-qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n- 72 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGI--------------CSRTI-QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNN- 72 (311)
T ss_pred CceEEEeccCcceeeeeehhcCe--------------EEEEE-ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCC-
Confidence 35799999999999999999998 55554 555778999999999999999999999999999872
Q ss_pred CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 174 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 174 (285)
..++.+|.+|+.. |+++.| ..+|+.+++|++||+++|||++...+-+.+. |..+|+++..+|+
T Consensus 73 -------------p~Pv~t~e~h~kN--VtaVgF-~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn 135 (311)
T KOG0315|consen 73 -------------PNPVATFEGHTKN--VTAVGF-QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN 135 (311)
T ss_pred -------------CCceeEEeccCCc--eEEEEE-eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC
Confidence 2478899999866 999998 8999999999999999999999866665555 7799999999999
Q ss_pred CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc-------------
Q 023246 175 IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------- 240 (285)
Q Consensus 175 ~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~------------- 240 (285)
...|++|..+|.|++||+.... -.++.......+......+++.+++++...|..++|++-..+..
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 9999999999999999997763 23332222233333334566778888999999999998764322
Q ss_pred ---eeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 241 ---AYRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.....+|+...++..+.+..++++..++-
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 12346788888888877778888876654
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=186.03 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=186.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
.++.|..+.|+|+| .+||+|+.|..|.+|++.... .-...+.+|.+.|..+.|.+++..+++ +.
T Consensus 46 h~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEEecC
Confidence 36789999999975 899999999999999987432 222333799999999999999998888 56
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|.+|+.||++++ +.++.+++|..- ++.+.- ..- ...+.++++|+++++||+++...+.++
T Consensus 111 Dk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p-~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 111 DKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDP-SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred CceEEEEecccc----------------eeeehhccccce--eeecCc-cccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 999999999999 788999999865 777763 333 456678999999999999999888887
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
.. .-+++++.|..++..+.+|+-|+.|++||++... ...+.+|...+..+.. ++++.++++-+-|.++++||++...
T Consensus 172 ~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl-s~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 EN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL-SRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred cc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEe-ccCCCccccccccceEEEEEecccC
Confidence 63 5689999999999999999999999999997776 5778889888876654 5667788999999999999998642
Q ss_pred c------------------ceeEeeeccccccCCCCCcCeEEEeecC
Q 023246 239 T------------------LAYRERRYNAADFESDEEEGETYLLGFS 267 (285)
Q Consensus 239 ~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 267 (285)
. +.+..++|+...+..+..+.-+|+++..
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 2 2223456777777777666677777643
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4e-30 Score=192.61 Aligned_cols=241 Identities=14% Similarity=0.187 Sum_probs=191.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
+..+.|..|+||+ ++|++|+.||.|.+||..+|++.+-++.. ....+ .-+..+|.|+.|+.|.++||+|+ |
T Consensus 213 KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQ------Aqd~f-MMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 213 KSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------AQDNF-MMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred ccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhh------hhcce-eecccceEEEeecccHHHhhccCcC
Confidence 4567899999986 99999999999999999999864433221 11122 45788999999999999999976 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|.|++|.+.++ .+++.|. .|... |+++.| +.++..+++++.|.++++--+.+|+++..+.
T Consensus 285 GkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 285 GKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred CcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHHhc
Confidence 99999999999 7888887 77755 999998 9999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+|.+.|+...|.++|.++++++.||+|++|+..+.. +.+++. ..-++..+...+.....++.+....++++.+++..
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 999999999999999999999999999999997665 444443 33445555555556667888888999999987653
Q ss_pred ccceeE-------------eeeccccccCCCCCcCeEEEeecCCCCC
Q 023246 238 QTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 238 ~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
.+..+ ..+|.+..+-+-.+++.+|.+....|..
T Consensus 426 -vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 426 -VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 22222 2344555555556667778777666654
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=178.75 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=183.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
.++|.++.|+-+| ++.++++.|.+|++|+...+.+ +++. .+|...|..++.+.|...|+++ .|
T Consensus 17 qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~l--------------iktY-sghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 17 QGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGAL--------------IKTY-SGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred ccceEEEEEccCC-CEEEEcCCCceEEeecccccce--------------eeee-cCCCceeeeccccccccccccCCCC
Confidence 5789999999986 9999999999999999998863 3333 8999999999999999988885 69
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--ceEEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLM 159 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~ 159 (285)
..+.+||+.++ +..+.|.+|... |+.+.| +.+...+++|+.|..+++||.++. +++..+
T Consensus 81 k~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 81 KAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 99999999999 899999999977 999998 889999999999999999997753 222211
Q ss_pred ------------ec--------------------------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC
Q 023246 160 ------------VG--------------------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL 200 (285)
Q Consensus 160 ------------~~--------------------------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~ 200 (285)
.. -..+|+++.|+++++..+.++.|+++++.|-.++++ ...
T Consensus 142 dea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred hhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence 01 135899999999999999999999999999999884 778
Q ss_pred CCCcccceeeccccCC-CceEEEeCCCCeEEEEEecccccceeEeee--ccccccCCCCCc
Q 023246 201 PDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLRLQRRQTLAYRERR--YNAADFESDEEE 258 (285)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 258 (285)
++|...-+.+.++... ...++++|+||.+++||+....++..+... +....+..++..
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 8999888888776664 457899999999999999998888776432 234566666543
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-29 Score=209.27 Aligned_cols=215 Identities=17% Similarity=0.280 Sum_probs=184.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+.++|.+++|+|+. .+|++|+.|-.|++|+..+.+ |..++ .+|-+-|+.+.|++.-..+++++
T Consensus 50 HdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--------------clftL-~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--------------CLFTL-LGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred cCCccceeeecCCC-CeEEecCCccEEEEEecccce--------------ehhhh-ccccceeEEeeccCCCceEEEccC
Confidence 35899999999985 899999999999999999887 55655 79999999999999999999965
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC--------
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------- 152 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-------- 152 (285)
|.+|+||+.++. +++..+.+|..- |.|..| .|....+++++-|.+|+|||+..
T Consensus 114 DQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-hptEDlIVSaSLDQTVRVWDisGLRkk~~~p 174 (1202)
T KOG0292|consen 114 DQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-HPTEDLIVSASLDQTVRVWDISGLRKKNKAP 174 (1202)
T ss_pred CCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-CCccceEEEecccceEEEEeecchhccCCCC
Confidence 999999999998 899999999965 999998 89999999999999999999751
Q ss_pred C-------------------c--eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccce
Q 023246 153 G-------------------K--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIM 208 (285)
Q Consensus 153 ~-------------------~--~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~ 208 (285)
+ . ..+.+.+|...|+-++|+|.-..+++|+.|..|++|..+..+ +.+..+|...+-
T Consensus 175 g~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 175 GSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 1 0 123567999999999999999999999999999999986654 567788988886
Q ss_pred eeccccCCCceEEEeCCCCeEEEEEecccccceeEeeecccccc
Q 023246 209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADF 252 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (285)
+..+ .+...++++.+.|++|+|||+.++..+..+.+..+..++
T Consensus 255 svlf-hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 255 SVLF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred eEEe-cCccceeEecCCCccEEEEecccccceeeeeccCCeEEE
Confidence 6654 344568999999999999999999888888666555443
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-29 Score=187.62 Aligned_cols=196 Identities=13% Similarity=0.223 Sum_probs=168.8
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...|.++.|-|.| .++++++.|.+|+.|++.++. |.+++ .+|...|..++.+.||.++++++ |
T Consensus 193 ~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 193 EHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred ccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEecCCC
Confidence 3568899999986 999999999999999999997 66665 88999999999999999999965 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---------------CcEEEEecCCCeEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---------------DEYVMSGSDCGHLF 146 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~l~~~~~dg~v~ 146 (285)
.+|++|-+.+. .+...++.|..+ |.+++| .|. ++++++++.|++|+
T Consensus 257 qtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 257 QTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred ceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccceEE
Confidence 99999999988 688889999977 888885 332 25899999999999
Q ss_pred EEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246 147 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP 225 (285)
Q Consensus 147 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 225 (285)
+||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++.. ...+..|..-+..+. ......++++|+-
T Consensus 318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD-fh~~~p~VvTGsV 396 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD-FHKTAPYVVTGSV 396 (406)
T ss_pred EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe-cCCCCceEEeccc
Confidence 99999999999999999999999999999999999999999999998775 455655555444443 2444559999999
Q ss_pred CCeEEEEEe
Q 023246 226 DVIMHVLRL 234 (285)
Q Consensus 226 d~~i~vwd~ 234 (285)
|-.+++|..
T Consensus 397 dqt~KvwEc 405 (406)
T KOG0295|consen 397 DQTVKVWEC 405 (406)
T ss_pred cceeeeeec
Confidence 999999964
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-29 Score=203.01 Aligned_cols=207 Identities=15% Similarity=0.152 Sum_probs=176.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
..||.+..|-+. .+.+++|+.|..|+||+..+++ .+..+ ..|.+-|++++.+|.-.++.+++ |
T Consensus 55 ~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt~e--------------kV~~F-eAH~DyIR~iavHPt~P~vLtsSDD 118 (794)
T KOG0276|consen 55 EVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNTGE--------------KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDD 118 (794)
T ss_pred ccchhhheeeec-cceEEEecCCceEEEEecccce--------------eeEEe-eccccceeeeeecCCCCeEEecCCc
Confidence 357888888886 4899999999999999999997 44444 89999999999999999888865 8
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
-+|++||.+.. +.+.++|.+|..- |.+++|.+.+.+.+++++-|++|++|.+.+..+..++.+
T Consensus 119 m~iKlW~we~~---------------wa~~qtfeGH~Hy--VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g 181 (794)
T KOG0276|consen 119 MTIKLWDWENE---------------WACEQTFEGHEHY--VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG 181 (794)
T ss_pred cEEEEeeccCc---------------eeeeeEEcCcceE--EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence 99999999865 4788999999955 999999555778999999999999999999999999999
Q ss_pred ccccceEeEEcCC--CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 162 DRHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 162 h~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
|...|+++.+-|- .++|++|+.|.+|++||..+.. ++++.+|...+.... ..+.-.++++|+.||++++|+..+.+
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~-fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF-FHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE-ecCCCcEEEEecCCccEEEecCccee
Confidence 9999999999874 4689999999999999998775 688999988875443 24455689999999999999988765
Q ss_pred cceeE
Q 023246 239 TLAYR 243 (285)
Q Consensus 239 ~~~~~ 243 (285)
+...+
T Consensus 261 lE~tL 265 (794)
T KOG0276|consen 261 LEKTL 265 (794)
T ss_pred hhhhh
Confidence 54443
No 30
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-29 Score=180.74 Aligned_cols=203 Identities=14% Similarity=0.197 Sum_probs=168.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d 81 (285)
..+..++|++...+++++++.||+++|||+.... .+...++.|...|.++.|++-.+ .+++++ |
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------cchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 4577899999888999999999999999965443 33344489999999999998654 455555 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|++|+...+ +.+.+|.+|... |....|.....+.+++++.|+.+++||++..-....+..
T Consensus 127 ~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a 188 (311)
T KOG0277|consen 127 GTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA 188 (311)
T ss_pred CceEeecCCCC----------------cceEeecCCccE--EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence 99999999887 788999999976 999997334678999999999999999876444444899
Q ss_pred ccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 162 DRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 162 h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
|...+.++.|+.- ...++||+.|+.|+.||++..+ +..+.+|.-.+.++.+.+.....+++++.|-++++||.....
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 9999999999874 4569999999999999998765 466778888888887766667789999999999999988653
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=186.81 Aligned_cols=221 Identities=17% Similarity=0.279 Sum_probs=180.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++.+|.+++.+|+ .++++||+.|..-.||++.+++ ....+ .+|...|+++.|+.+|.+||+|.
T Consensus 63 H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge--------------~~~el-tgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 63 HTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGE--------------FAGEL-TGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred cCCceEEEEeCCC-CceEEecCCCceEEEEEccCCc--------------ceeEe-cCCCCceEEEEEccCceEEEecCC
Confidence 4678999999995 5999999999999999999986 22333 89999999999999999999986
Q ss_pred CCcEEEEEcCCCC--------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 81 DELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 81 d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
+|.|.||...++. +....++-.+.+++....+.+.+|..+ +++=.| .|+|+
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~pdGK 203 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IPDGK 203 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cCCCc
Confidence 9999999998875 233344444556676788899999977 888887 89999
Q ss_pred EEEEecCCCeEEEEecCCCceEEEEec---------------------------------------------------cc
Q 023246 135 YVMSGSDCGHLFIWKKKGGKLVRLMVG---------------------------------------------------DR 163 (285)
Q Consensus 135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------------------------------------------h~ 163 (285)
.++++..||+|++|++.+++++..+.. +.
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 999999999999999999988775441 11
Q ss_pred ccceE---eEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 164 HVVNQ---LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 164 ~~v~~---~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
..+.+ +.|+..-++.|+|+.||+|.|||+....++....|...++.+.|.. ..++++++.+|.|+.||.++++.+
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceE
Confidence 11222 3333344568899999999999999999888888999999998865 568999999999999999999876
Q ss_pred eeE
Q 023246 241 AYR 243 (285)
Q Consensus 241 ~~~ 243 (285)
...
T Consensus 362 ~~y 364 (399)
T KOG0296|consen 362 FTY 364 (399)
T ss_pred EEE
Confidence 554
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-29 Score=189.11 Aligned_cols=233 Identities=13% Similarity=0.186 Sum_probs=197.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
+.+|+.+-|+|. -.++++++.|++|++||..+++ +...+ .+|...+..|+|+..|++|++++ |
T Consensus 108 r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~--------------~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 108 RSSVTRVIFHPS-EALVVSASEDATIKVFDTETGE--------------LERSL-RGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred ccceeeeeeccC-ceEEEEecCCceEEEEEccchh--------------hhhhh-hccccceeEEEEecCccEEEecCCc
Confidence 467899999996 4899999999999999999998 43333 89999999999999999999965 7
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
-.+.+||..... ++++.+.+|... |.++.| -|.|.++++++.|.+|+.|++.++.++.++.+
T Consensus 172 l~~~LWd~~~~~---------------~c~ks~~gh~h~--vS~V~f-~P~gd~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 172 LSAKLWDFDTFF---------------RCIKSLIGHEHG--VSSVFF-LPLGDHILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred cchhheeHHHHH---------------HHHHHhcCcccc--eeeEEE-EecCCeeeecccccceeEEecccceeEEeccC
Confidence 779999998642 677888888866 999998 68899999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCC--------------CceEEEeCCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE--------------DHSRITLTPD 226 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~d 226 (285)
|...|..++.+.||..+++++.|.++++|-+.++. ...+..|..++-++.|.... ..++.+++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 99999999999999999999999999999998774 35566677666666554321 2488999999
Q ss_pred CeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEeecCCC
Q 023246 227 VIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 227 ~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
++|++||+..+..+..+ .++|.+..+.+..|++.+-+++....
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 99999999998776654 35677888888888888888877654
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=204.98 Aligned_cols=248 Identities=17% Similarity=0.170 Sum_probs=184.9
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--------------------------C------CcC------
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--------------------------S------PIS------ 43 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--------------------------~------~~~------ 43 (285)
.++.|+++.||+|| .|||+|+.|+.|+||.+...+.. . ...
T Consensus 266 h~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred cCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46899999999986 99999999999999998761100 0 000
Q ss_pred CCC-----Cc--ccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec
Q 023246 44 SDT-----PV--DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 116 (285)
Q Consensus 44 ~~~-----~~--~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (285)
.+. .+ -.-.+...+.+|.+.|..|.||.++.+|.++-|.+|++|++... .++..|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe-
Confidence 000 00 00022334479999999999999877777777999999999887 7888886
Q ss_pred ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
|.+- |+|++|++-|.+||++|+-||.|+||++...+.+.-...+ .-|++++|.|+|++.+.|+.+|.+++|+....+
T Consensus 408 Hndf--VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDF--VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCe--eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 6644 9999996668999999999999999999977777655544 789999999999999999999999999987765
Q ss_pred CCC---CC------CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE------------eeeccccccCCC
Q 023246 197 FPP---LP------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR------------ERRYNAADFESD 255 (285)
Q Consensus 197 ~~~---~~------~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~ 255 (285)
+++ +. .....|..+-..+.....++..+.|..|+|+|.+....+.++ .+..++..+.+.
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 321 11 112245555444444445777899999999999766555544 344577778888
Q ss_pred CCcCeEEEeecCCCC
Q 023246 256 EEEGETYLLGFSDSD 270 (285)
Q Consensus 256 ~~~~~v~~~~~~~~~ 270 (285)
.++..||++....-+
T Consensus 565 seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCceEEEEeCCCCc
Confidence 888889999875433
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=191.12 Aligned_cols=224 Identities=18% Similarity=0.297 Sum_probs=183.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
...|.|+.+.. ..+++|..|++|+|||..+.. |.+.+ .+|++.|.|+.|.. +.+++| +|
T Consensus 197 skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~--------------c~~~L-~GHtGSVLCLqyd~--rviisGSSD 256 (499)
T KOG0281|consen 197 SKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLE--------------CLKIL-TGHTGSVLCLQYDE--RVIVSGSSD 256 (499)
T ss_pred CCceEEEEecc---hhhhcccccCceEEeccccHH--------------HHHhh-hcCCCcEEeeeccc--eEEEecCCC
Confidence 45788888865 589999999999999998776 55555 89999999999954 488886 59
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRL 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~ 158 (285)
.+|++||.+++ +++.++-+|... |..+.| +..++++++.|.++.+||+.... +.+.
T Consensus 257 sTvrvWDv~tg----------------e~l~tlihHcea--VLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 257 STVRVWDVNTG----------------EPLNTLIHHCEA--VLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred ceEEEEeccCC----------------chhhHHhhhcce--eEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 99999999999 799999999977 999998 36699999999999999987654 3456
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+.+|...|+.+.|+ .+++++++.|.+|++|++.+.. +.++.+|...+-+... .++++++||+|.+|++||+..+
T Consensus 316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEecccc
Confidence 77999999999995 5699999999999999998876 5788888888766544 4559999999999999999988
Q ss_pred ccceeEe--------eeccccccCCCCCcCeEEEeecCCCCCC
Q 023246 238 QTLAYRE--------RRYNAADFESDEEEGETYLLGFSDSDAS 272 (285)
Q Consensus 238 ~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 272 (285)
..+..++ ...+...+.++.=+|.+-++++..+.+.
T Consensus 391 ~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence 7665542 2223455666767778888888776554
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=202.15 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=177.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...|.+++++.-+..+|++++.|+++++|++...+.. .+...+........|...|++++.+|+.+++|+|+ |
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~------~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET------AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCCcccc------cccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 4578899999888899999999999999999863211 11111222333468999999999999999999976 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++.+||++... ....++.+|+.. +.++.| ++..+.++|++.|++|++|.+.+..++.++.+
T Consensus 485 ktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-s~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 485 KTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-SKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred cceeeecccCc----------------eEEEEeeCCccc--eEEEEe-ccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 99999999866 788999999966 999998 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
|...|..+.|-.+++.|++++.||.|++|++++.. +.++..|..++-.+.. .+....+++|+.||.|.+|.=
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~-~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV-SPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee-cCccceeEecCCCeEEEEeec
Confidence 99999999999999999999999999999998775 6889999999876655 334448999999999999953
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=201.04 Aligned_cols=217 Identities=15% Similarity=0.215 Sum_probs=171.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-ND 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d 81 (285)
..|++++...+| .+|+||+.|+++++|.+..+... ..+.. ...+|+..|.+++++..+. +|+++ .|
T Consensus 366 e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~----------~~~~a-~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 366 EAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK----------SLCVA-QANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred hheeeeeecccC-cEEEEecCCceEEEEEecCCcch----------hhhhh-hhcccccccceeeecccCccEEEEecCC
Confidence 457788855545 89999999999999999543210 01222 2379999999999988774 78885 59
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.++++|++...... ..........+...|.-. |+++++ +|+.++++||+.|.+.++|+++....+.++.+
T Consensus 434 ~tlK~W~l~~s~~~-------~~~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 434 CTLKLWDLPKSKET-------AFPIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ceEEEecCCCcccc-------cccceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEEEeeC
Confidence 99999999763100 001111122233456644 999998 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|+..|.++.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...+..... -..+..+++++.||.|++|++.+...+
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F-~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF-IRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee-eeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999999999999999999999998775 6889999999877755 345667899999999999999998776
Q ss_pred eeE
Q 023246 241 AYR 243 (285)
Q Consensus 241 ~~~ 243 (285)
..+
T Consensus 583 ~tl 585 (775)
T KOG0319|consen 583 MTL 585 (775)
T ss_pred hhh
Confidence 554
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.3e-27 Score=171.91 Aligned_cols=198 Identities=15% Similarity=0.259 Sum_probs=165.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++..|.+++|+|.+ ++||+|+.|.++.||.-..++.. +.. .+.+|...|.+++|+++|.+||+++
T Consensus 60 hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe------------cv~-~lEGHEnEVK~Vaws~sG~~LATCSR 125 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE------------CVA-TLEGHENEVKCVAWSASGNYLATCSR 125 (312)
T ss_pred chheeeeeeecCCC-cEEEEeeccceEEEeecCCCcee------------EEe-eeeccccceeEEEEcCCCCEEEEeeC
Confidence 35679999999986 89999999999999987766531 333 3489999999999999999999975
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---CCceEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLVR 157 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~~~~~~ 157 (285)
|+.|-||.+... ....+...++.|... |..+.| +|...+|++++.|.+|++|+-. .-+++.
T Consensus 126 DKSVWiWe~ded-------------dEfec~aVL~~HtqD--VK~V~W-HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~ 189 (312)
T KOG0645|consen 126 DKSVWIWEIDED-------------DEFECIAVLQEHTQD--VKHVIW-HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ 189 (312)
T ss_pred CCeEEEEEecCC-------------CcEEEEeeecccccc--ccEEEE-cCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence 999999999744 123678889999977 999996 9999999999999999999866 345789
Q ss_pred EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
++.+|...|.+++|+|.|..|++++.|++++||..... +.. |...++.+.|. +..+++++.|+.|+++.-..
T Consensus 190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeeec---ccceEeccCCCEEEEEEecC
Confidence 99999999999999999999999999999999986532 221 44566666665 55899999999999997653
No 38
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.1e-27 Score=199.26 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=154.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~- 79 (285)
+.++|.+++|+|+++.+||+|+.|++|+|||+.++..... ... .+...+.+|...|.+++|+|++.. |+++
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIK------DPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccc------cceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 3568999999997568999999999999999986431000 000 111123789999999999999875 4564
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.|++|++||+.++ +....+. +... |.+++| +++|.+|++++.|+.|++||+++++.+.++
T Consensus 146 ~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 146 FDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 5999999999877 4445554 3333 999996 999999999999999999999999999999
Q ss_pred ecccccceEe-----EEcCCCCeEEEEecCC----cEEEEcCCC-CCC-CCCCCCc-ccceeeccccCCCceEEEeCCCC
Q 023246 160 VGDRHVVNQL-----EPHPHIPMFATCGIEK----TVKLWAPMP-TDF-PPLPDNA-EKIMKANKQGREDHSRITLTPDV 227 (285)
Q Consensus 160 ~~h~~~v~~~-----~~~p~~~~l~t~~~d~----~i~iwd~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~ 227 (285)
.+|.+.+... .|++++.++++++.|+ +|++||++. ... ..+..+. ...+...+....+.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 9998765433 3458889999988775 799999985 332 2221111 12222223333466889999999
Q ss_pred eEEEEEeccc
Q 023246 228 IMHVLRLQRR 237 (285)
Q Consensus 228 ~i~vwd~~~~ 237 (285)
.|++|++..+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 9999999765
No 39
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=182.74 Aligned_cols=224 Identities=13% Similarity=0.203 Sum_probs=174.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC---cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 78 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 78 (285)
++.++.+.+|+||| .++|||+.|-+|+|.|++.. .....+..+.+-....+...+..|...|+++.|+|....|++
T Consensus 111 HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 46788999999986 89999999999999998721 111111111111111222233689999999999999999999
Q ss_pred ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246 79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
++ |++|++||.... ...+.++..+...++.++.| +|.|.+++.|.+..++++||+++-++..
T Consensus 190 ~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred ccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEeccceeEee
Confidence 75 999999999765 23334444444455999998 9999999999999999999999988865
Q ss_pred EEe---cccccceEeEEcCCCCeEEEEecCCcEEEEcC-CCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246 158 LMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-MPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVL 232 (285)
Q Consensus 158 ~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw 232 (285)
... .|.+.|+++.+++.+++.+|++.||.|++||- .+.++.++. .|.+..++......+++++++.+.|..+++|
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 543 68899999999999999999999999999996 444555543 4666666766667788999999999999999
Q ss_pred EecccccceeE
Q 023246 233 RLQRRQTLAYR 243 (285)
Q Consensus 233 d~~~~~~~~~~ 243 (285)
.+.+++.+...
T Consensus 333 Ei~t~R~l~~Y 343 (430)
T KOG0640|consen 333 EISTGRMLKEY 343 (430)
T ss_pred eecCCceEEEE
Confidence 99998776554
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.7e-27 Score=210.46 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=160.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec-C
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-D 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~-d 81 (285)
.+|.+++|+|....+|++++.||+|++||+.+++ ....+ .+|...|++++|+| ++.+|++++ |
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--------------~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--------------LVTEM-KEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 4678999998656899999999999999998775 22222 68999999999997 678888865 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 160 (285)
++|++||+..+ ..+..+..+ .. +.++.|.++++.++++|+.||.|++||+++.+ .+..+.
T Consensus 598 g~v~iWd~~~~----------------~~~~~~~~~-~~--v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 598 GSVKLWSINQG----------------VSIGTIKTK-AN--ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred CEEEEEECCCC----------------cEEEEEecC-CC--eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 99999999876 566666644 23 88898756789999999999999999998765 567788
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-------CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
+|...|.++.|. ++.+|++++.|++|++||++.. .+..+.+|...+..+.+ ...+.++++++.|+.+++|+
T Consensus 659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-SVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-cCCCCEEEEEeCCCEEEEEE
Confidence 999999999997 6788999999999999998642 23456667665544433 44567999999999999999
Q ss_pred eccc
Q 023246 234 LQRR 237 (285)
Q Consensus 234 ~~~~ 237 (285)
....
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 7654
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=199.88 Aligned_cols=231 Identities=15% Similarity=0.216 Sum_probs=180.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
+..+|.+++|+|.. ..++++-..|.|++||.+.+.+ +..+ ..|.++|+.+.|+|+..+|++| .
T Consensus 8 kSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl--------------i~rF-deHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL--------------IDRF-DEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred ccccccceecCCCC-CEEEEeecCceeeeehhhhhhH--------------Hhhh-hccCCccceeeecCCCCeEEecCC
Confidence 45689999999975 7999999999999999998863 2333 8999999999999999999996 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|-.|+||+.... +++.++.+|-+- |..+.| ++.-.+++++++|.+|+||+..+++++..+.
T Consensus 72 DykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 72 DYKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred ccEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 999999999988 799999999976 999997 8999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC------------------------------CCCCCcccceee
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP------------------------------PLPDNAEKIMKA 210 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~------------------------------~~~~~~~~~~~~ 210 (285)
+|...|.|..|+|....++++|.|.+||+||+.+-+.. .+.+|...+...
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 99999999999999999999999999999998542211 011233332222
Q ss_pred ccccCCCceEEEeCCCCeEEEEEecccccce------------eEeeeccccccCCCCCcCeEEEeecCC
Q 023246 211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
.. .+.-.++++|+.|+.|++|.+...+... ..-+.|...-+.+.++++.+-+++.+.
T Consensus 213 Af-hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 213 AF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred Ee-cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 11 1223589999999999999987643321 122333333344445555566666543
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=180.39 Aligned_cols=202 Identities=18% Similarity=0.292 Sum_probs=175.9
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
..|..+++|+.. .++++++.|+.|+.||+...+. +++. .+|-..|.+++.+|.-..|+++ .|.
T Consensus 194 ~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkv--------------IR~Y-hGHlS~V~~L~lhPTldvl~t~grDs 257 (460)
T KOG0285|consen 194 ETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKV--------------IRHY-HGHLSGVYCLDLHPTLDVLVTGGRDS 257 (460)
T ss_pred heeeeeeecccC-ceEEEecCCCeeEEEechhhhh--------------HHHh-ccccceeEEEeccccceeEEecCCcc
Confidence 457789999975 7999999999999999998863 3333 7899999999999999988885 599
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
+++|||+++. ..+..+.+|... |..+.+ .|....+++|+.|++|++||++.|+...++..|
T Consensus 258 t~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~-~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 258 TIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC-QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred eEEEeeeccc----------------ceEEEecCCCCc--ceeEEe-ecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 9999999988 789999999987 999998 888889999999999999999999999999999
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
...|.+++.+|....|++++.| .|+-|++..+. +..+.+|..-+..+. ...+..+++|+.+|.|..||.+++...+
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~--~nsD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS--VNSDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee--eccCceEEEcCCceEEEEEecCcCcccc
Confidence 9999999999999999999987 59999987665 566777777776663 3456689999999999999999886665
Q ss_pred eE
Q 023246 242 YR 243 (285)
Q Consensus 242 ~~ 243 (285)
..
T Consensus 396 ~~ 397 (460)
T KOG0285|consen 396 RG 397 (460)
T ss_pred cc
Confidence 54
No 43
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=6.9e-27 Score=195.02 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=155.4
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-cCCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~d~~ 83 (285)
|.....++++ ..+++++.+.....|+...+.........+.+. .....+.+|.+.|.+++|+| ++++|+++ .|++
T Consensus 23 i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 23 VTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred cccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 4444556653 456777777888888876543221111111110 11122378999999999999 77888886 5999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
|++||+...... ......+..+.+|... |.+++| +|++ ++|++++.|+.|++||+++++.+..+.+|
T Consensus 100 IkIWdi~~~~~~---------~~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 100 IMGWGIPEEGLT---------QNISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EEEEecCCCccc---------cccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 999999754100 0011345678888866 999997 8875 79999999999999999999999999999
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccce-eeccccCCCceEEE-e---CCCCeEEEEEecc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM-KANKQGREDHSRIT-L---TPDVIMHVLRLQR 236 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-~---s~d~~i~vwd~~~ 236 (285)
...|.+++|+|++.+|++++.|++|++||++.+.. ..+..|..... ...| ......+++ + +.|+.|++||++.
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w-~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW-AKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE-cCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 99999999999999999999999999999987763 45555654432 2333 333344544 3 3579999999986
Q ss_pred ccc
Q 023246 237 RQT 239 (285)
Q Consensus 237 ~~~ 239 (285)
...
T Consensus 247 ~~~ 249 (493)
T PTZ00421 247 MAS 249 (493)
T ss_pred CCC
Confidence 543
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.2e-26 Score=207.14 Aligned_cols=234 Identities=12% Similarity=0.182 Sum_probs=178.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-c
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-N 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~ 80 (285)
...|.+++|+|++ .+||+|+.|++|+||++........ ....++ .. ..+...+.+++|++. +.+|+++ .
T Consensus 483 ~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~-----~~--~~~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 483 SNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPV-----VE--LASRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccce-----EE--ecccCceeeEEeccCCCCEEEEEeC
Confidence 4579999999975 8999999999999999864210000 000001 11 123467999999885 5688886 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|++|++||+.++ +.+..+.+|... |.+++| +| ++.+|++|+.|+.|++||+++++.+..+
T Consensus 554 Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~-~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 554 EGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY-SSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred CCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE-cCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 999999999877 677888889876 999997 65 7899999999999999999999998888
Q ss_pred ecccccceEeEEc-CCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 160 VGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 160 ~~h~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
..+ ..|.++.|+ +++.+|++|+.|+.|++||++... +..+.+|...+..+.+. ++..+++++.|+.|++||+..
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence 754 679999995 578899999999999999997654 34566787777766552 556899999999999999874
Q ss_pred c------ccce----------eEeeeccccccCCCCCcCeEEEeecC
Q 023246 237 R------QTLA----------YRERRYNAADFESDEEEGETYLLGFS 267 (285)
Q Consensus 237 ~------~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~ 267 (285)
. ..+. .+.+.+....++++..++.+++++..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 2 1111 23455566677777778888887743
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=192.61 Aligned_cols=231 Identities=13% Similarity=0.203 Sum_probs=188.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
...|+++.|.|....+|++++.|+.|+||++.. ++ |+.++ .+|..+|.+++|+++|..|.++ -
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------CLRTF-KGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcc--------------eehhh-hcchhhhhhhhccccCCeeeeeec
Confidence 467899999995569999999999999999987 43 44444 8999999999999999977775 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|+.|++||++++ +++..|.... .++++.| .|++ +.+++|+.|+.|+.||+++++.+..+
T Consensus 279 D~~lKlwDtETG----------------~~~~~f~~~~---~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 279 DRFLKLWDTETG----------------QVLSRFHLDK---VPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred ceeeeeeccccc----------------eEEEEEecCC---Cceeeec-CCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 999999999999 6777776443 3889998 7877 88999999999999999999999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC----CCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP----DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
..|-+.|..+.|-++++++++.+.|++++||+.+..-...+. .|..+.+.+ .+....+++-+-|..|.++.+.
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~---~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL---HPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec---CCCCCeehhhccCceEEEEecc
Confidence 999999999999999999999999999999998776533222 233333333 3445578888889999998865
Q ss_pred ccccc---------------eeEeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246 236 RRQTL---------------AYRERRYNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 236 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
..-.+ ..+.++|++..+.+++.+|.++++++..-..
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 43221 1247899999999999999999999876543
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=197.07 Aligned_cols=201 Identities=18% Similarity=0.283 Sum_probs=173.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+.+.|.++++.. ++.++++|+.|.++++||+.+++ |...+ .+|...|.++...+ .++++|+
T Consensus 248 H~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l-~gh~stv~~~~~~~--~~~~sgs~ 309 (537)
T KOG0274|consen 248 HFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--------------CTHSL-QGHTSSVRCLTIDP--FLLVSGSR 309 (537)
T ss_pred CCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc--------------EEEEe-cCCCceEEEEEccC--ceEeeccC
Confidence 568899999988 56899999999999999999998 55555 79999999987754 3666655
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|.+|++|++.++ ..++.+.+|..+ |.++.+ + +.++++|+.|+.|++||+.++++++++.
T Consensus 310 D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 310 DNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-D--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred CceEEEEeccCc----------------ceEEEecccccc--EEEEEe-c--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 999999999988 788999989877 999987 4 8899999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
+|...|.++.+.+. .++++|+.|++|++||+++. ++..+.+|..-+...... ...+++++.|++|++||..+++
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCc
Confidence 99999999988765 78999999999999999888 467787777776444333 3489999999999999999998
Q ss_pred cceeEee
Q 023246 239 TLAYRER 245 (285)
Q Consensus 239 ~~~~~~~ 245 (285)
.+..+..
T Consensus 445 ~~~~~~~ 451 (537)
T KOG0274|consen 445 CLRTLEG 451 (537)
T ss_pred eeeeecc
Confidence 8877754
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.1e-27 Score=178.40 Aligned_cols=241 Identities=12% Similarity=0.168 Sum_probs=184.1
Q ss_pred ccceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246 3 SIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 80 (285)
.++|.+++|.-.++ ..|++++.|.++++|-...++.... +.... .+|...|.++...++|..+++++
T Consensus 144 t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~----------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 144 TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK----------ALKVC-RGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh----------HHhHh-cccccceeEEEecCCCCeEEeec
Confidence 45777777744332 3699999999999999987763211 11111 59999999999999999999987
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCC---------ccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSP---------EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 150 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 150 (285)
|.+|.||+..+........... .......++..+.+|+.+ |.++.| ++ ...+++++.|.+|+.||+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~--Vs~V~w-~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP--VSSVVW-SD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc--eeeEEE-cC-CCceEeecccceEEEEEe
Confidence 9999999944332111111111 112233567788999977 999996 65 778999999999999999
Q ss_pred CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCC
Q 023246 151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPD 226 (285)
Q Consensus 151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 226 (285)
.++....++.. ....+++..+|..++|++|+.|..|++||++.+. .+++.+|...+-.+.|...+...+++++.|
T Consensus 289 etg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 289 ETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred ecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 99999988885 4689999999999999999999999999998764 367889999998888877788899999999
Q ss_pred CeEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 227 VIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
+++++||+++...+. ..+..+.+. |+.++..++
T Consensus 368 ~t~klWDvRS~k~pl--------ydI~~h~DK--vl~vdW~~~ 400 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPL--------YDIAGHNDK--VLSVDWNEG 400 (423)
T ss_pred CeEEEEEeccCCCcc--------eeeccCCce--EEEEeccCC
Confidence 999999999876332 233333333 666666554
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.7e-26 Score=180.56 Aligned_cols=231 Identities=18% Similarity=0.291 Sum_probs=180.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
++.+|++++|+|++ .+|++++.||.+++|++.+++ .... ...|...+..+.|+|++++++++ .
T Consensus 8 h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~--------------~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 8 HTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--------------LLRT-LKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred cCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC--------------cEEE-EecCCcceeEEEECCCCCEEEEEcC
Confidence 46789999999975 899999999999999998764 1122 25778889999999999888875 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
++.|++|++... +....+..|... +.++.| .++++++++++.++.|++||+++++....+.
T Consensus 72 ~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 72 DKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred CCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 999999999876 567777777755 999997 8888899999889999999999899998888
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.|...|.+++|+|++.++++++.|+.|++||++..+ ...+..+...+..+.+ .+++..+++++.++.+++||++..+.
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF-SPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE-CCCcCEEEEecCCCcEEEEECCCCce
Confidence 899999999999998888888889999999998665 4455555556655554 34455777788899999999986554
Q ss_pred ceeE----------eeeccccccCCCCCcCeEEEeecCC
Q 023246 240 LAYR----------ERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 240 ~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
...+ .+.++...+.....++.+++++...
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 4433 2333333334444456677776654
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1e-26 Score=191.26 Aligned_cols=232 Identities=13% Similarity=0.197 Sum_probs=189.8
Q ss_pred CccceeEEEEcCCCCcEEEEeeCC-CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
...+|..++|+..| ..||.|+.. |.+-||+..+...+ -. ..+|...+++++++|||+++|+|
T Consensus 306 s~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYV--------------lK-QQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 306 SDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYV--------------LK-QQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred ccceeeEEEecccC-CEEEEcCCccceEEEEEeecccee--------------ee-ccccccceeeEEECCCCcEEEecc
Confidence 45789999999986 888888765 89999999876421 11 17899999999999999999996
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.||+|+|||..++ -+..+|..|+.. |+.+.| ...++.+++.+-||+|+.||+......+++
T Consensus 370 eDgKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 370 EDGKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CCCcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-EecCCEEEEeecCCeEEeeeecccceeeee
Confidence 5999999999988 699999999987 999997 899999999999999999999999999988
Q ss_pred eccc-ccceEeEEcCCCCeEEEEecCC-cEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 160 VGDR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 160 ~~h~-~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
.... -...+++..|.|..++.|+.|. .|.+|++.++++ ..+.+|.+++..+.. .+....++++|.|.+|++||+-.
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f-~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF-SPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE-ccccCeEEeccccceEEEEEeec
Confidence 7543 4567899999999998888776 699999998885 678899999877654 44555899999999999999876
Q ss_pred cc-cce---------eEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 237 RQ-TLA---------YRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 237 ~~-~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.. +.. .+.+.|++..++...-+|.+-+++..++
T Consensus 510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 52 222 2356677777777666667777665543
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=190.37 Aligned_cols=227 Identities=16% Similarity=0.268 Sum_probs=186.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
..+|.++.++|.. ..++++-..|.|.|||..+..+.+. | .-..-+|++..|-+-.+.+++|+ |
T Consensus 13 SdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVks---------f------eV~~~PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 13 SDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKS---------F------EVSEVPVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred CCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeee---------e------eecccchhhheeeeccceEEEecCC
Confidence 4689999999986 6888899999999999998874332 2 22345888999999888999875 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~ 160 (285)
..|+||+.++. +.++.|..|.+- |.+++. +|...+++++++|-.|++||.+. ..+..++.
T Consensus 77 ~~IrVfnynt~----------------ekV~~FeAH~Dy--IR~iav-HPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 77 MQIRVFNYNTG----------------EKVKTFEAHSDY--IRSIAV-HPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred ceEEEEecccc----------------eeeEEeeccccc--eeeeee-cCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 99999999998 799999999976 999997 99999999999999999999875 35788999
Q ss_pred cccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccC-CCceEEEeCCCCeEEEEEeccc
Q 023246 161 GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 161 ~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+|...|.+++|+|. .+.|++++.|++|++|.+.+.. ..++.+|...+.++..... +..++++|+.|.+++|||.+++
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 99999999999995 5569999999999999996654 5788999999988877655 3459999999999999999998
Q ss_pred ccceeEe----------eeccccccCCCCCcCeEEEe
Q 023246 238 QTLAYRE----------RRYNAADFESDEEEGETYLL 264 (285)
Q Consensus 238 ~~~~~~~----------~~~~~~~~~~~~~~~~v~~~ 264 (285)
..++.++ +.|.-+-+.+++++|.+-++
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 7666553 23333334455555555444
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=168.61 Aligned_cols=223 Identities=10% Similarity=0.145 Sum_probs=168.6
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS- 78 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s- 78 (285)
|+..+|.+++|+.+| ..|++|+.|+++++|++...+. .......+|.+.|-.++|+|.. .+|++
T Consensus 18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred hhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 456789999999986 9999999999999999987653 2223337899999999999876 46776
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-------
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------- 151 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~------- 151 (285)
+.|.+|++||++.+ ++.......... +. +. |+|+|++++.++.|..|.+.|.+
T Consensus 84 s~dk~ir~wd~r~~----------------k~~~~i~~~~en--i~-i~-wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSG----------------KCTARIETKGEN--IN-IT-WSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred cCCceEEEEEeccC----------------cEEEEeeccCcc--eE-EE-EcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 46999999999988 455554433322 22 23 36666666666666555555544
Q ss_pred ----------------------------------CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-
Q 023246 152 ----------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD- 196 (285)
Q Consensus 152 ----------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~- 196 (285)
.-+++..+++|.....|+.|+|+|++||+|+.|..+.+||+...-
T Consensus 144 ~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC 223 (313)
T KOG1407|consen 144 EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC 223 (313)
T ss_pred hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh
Confidence 334555777899899999999999999999999999999997654
Q ss_pred CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCc
Q 023246 197 FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEE 258 (285)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
++.+..+.=++..+ ..+.++++++++|+|..|-|-+++++.++..+........++.|+..
T Consensus 224 ~R~isRldwpVRTl-SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 224 ERCISRLDWPVRTL-SFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR 284 (313)
T ss_pred heeeccccCceEEE-EeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence 45555444444444 34678889999999999999999999888888777667777777665
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=2.1e-26 Score=182.35 Aligned_cols=219 Identities=14% Similarity=0.207 Sum_probs=160.3
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-- 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-- 80 (285)
.+++-..|+|.| .++|+|...|+|||||....+. .++..+.--.++|..|+|+++++.++. |.
T Consensus 60 ~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr 125 (603)
T KOG0318|consen 60 HQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR 125 (603)
T ss_pred ceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence 467888999975 8999999999999999875332 222222445779999999999987766 53
Q ss_pred C--CcEEEEEcCCCCCCCC-------------------------CCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246 81 D--ELVYLFEKNMGLGPSP-------------------------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 133 (285)
Q Consensus 81 d--~~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 133 (285)
+ |.+.+||..+..+... ..+....-++.+...+++.|. +.|.++.| +|+|
T Consensus 126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs--kFV~~VRy-sPDG 202 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS--KFVNCVRY-SPDG 202 (603)
T ss_pred cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc--cceeeEEE-CCCC
Confidence 2 4567777654431110 011111123334444555666 45999998 9999
Q ss_pred cEEEEecCCCeEEEEecCCCceEEEEe---cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-------------
Q 023246 134 EYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------------- 197 (285)
Q Consensus 134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~------------- 197 (285)
.++++++.||++++||-.+++.+..+. +|.+.|.+++|+||+..|+|++.|++++|||....++
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence 999999999999999999999999998 8999999999999999999999999999999864331
Q ss_pred -------------------------------CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 198 -------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 198 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
..+.+|...+..+.. .++..++++++.||.|.-|+..++..-
T Consensus 283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE-cCCCCEEEeeccCceEEEEecCCcccc
Confidence 122334444433322 344578999999999999999877554
No 53
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.2e-27 Score=182.50 Aligned_cols=220 Identities=20% Similarity=0.279 Sum_probs=177.9
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-e
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~ 79 (285)
+.+.|+.+.+-|+++.++|+++..+.|.|||..+..-... ....+.+...+.+|...-++++|++... .|++ +
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----ccccCCCceEEEeecccccccccccccceeEeecc
Confidence 3567889999999999999999999999999976542111 1113344555688998889999999765 4555 5
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC--CCceEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVR 157 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~--~~~~~~ 157 (285)
.|++|++||+...... -+.......+.+|... |..++|...+...|+++++|+.+.|||++ +.++..
T Consensus 198 ~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 198 DDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred CCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 6999999999866210 1112355678889877 99999844567788999999999999999 566777
Q ss_pred EEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 158 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
...+|.+.|++++|+|.+.. ||||+.|++|.+||+|..+ +..+.+|...++++.|.+.....+++.+.|+.+.|||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 88899999999999996665 9999999999999998764 68899999999999998888889999999999999999
Q ss_pred ccc
Q 023246 235 QRR 237 (285)
Q Consensus 235 ~~~ 237 (285)
.+-
T Consensus 347 s~i 349 (422)
T KOG0264|consen 347 SRI 349 (422)
T ss_pred ccc
Confidence 764
No 54
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.7e-26 Score=191.72 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=139.8
Q ss_pred eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-cCCcEEEEEcCCCCCCCCCC
Q 023246 22 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS 99 (285)
Q Consensus 22 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 99 (285)
|+.++.|++|+..... ... .+.+|.+.|.+++|+|+ +.+|+++ .|++|+|||+.......
T Consensus 50 GG~~gvI~L~~~~r~~--------------~v~-~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~--- 111 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------------PVI-KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV--- 111 (568)
T ss_pred CCceeEEEeeecCCCc--------------eEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---
Confidence 4556777777765432 222 23789999999999997 6788886 59999999997541000
Q ss_pred CCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeE
Q 023246 100 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 178 (285)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 178 (285)
. .....+..+.+|... |.+++| +|++.. +++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus 112 ---~--~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 112 ---K--EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ---c--ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 0 000234567788866 999997 898875 5789999999999999998887776 56789999999999999
Q ss_pred EEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccc----cCCCceEEEeCCC----CeEEEEEeccc
Q 023246 179 ATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ----GREDHSRITLTPD----VIMHVLRLQRR 237 (285)
Q Consensus 179 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~s~d----~~i~vwd~~~~ 237 (285)
++++.|+.|++||++++.. .++.+|...+.....+ ..+..++++++.+ ++|++||++..
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 9999999999999998764 5566676554322221 2455577776655 48999999963
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=171.30 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=165.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~ 80 (285)
+++.|+.+.|.+++ +.+++++.|.+|+.||+++++ +.... .+|..-|+++.-+.-|. ++.+++
T Consensus 89 HsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~--------------~~rk~-k~h~~~vNs~~p~rrg~~lv~Sgs 152 (338)
T KOG0265|consen 89 HSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK--------------RIRKH-KGHTSFVNSLDPSRRGPQLVCSGS 152 (338)
T ss_pred ccceeEeeeeccCC-CEEEEecCCceEEEEecccce--------------eeehh-ccccceeeecCccccCCeEEEecC
Confidence 57889999999986 899999999999999999998 33333 78999999998555565 555565
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|+++++||+++. ..++++... -.++++.| ...+..+.+|+-|+.|++||++....++.+
T Consensus 153 dD~t~kl~D~R~k----------------~~~~t~~~k---yqltAv~f-~d~s~qv~sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 153 DDGTLKLWDIRKK----------------EAIKTFENK---YQLTAVGF-KDTSDQVISGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred CCceEEEEeeccc----------------chhhccccc---eeEEEEEe-cccccceeeccccCceeeeccccCcceEEe
Confidence 999999999977 566666432 23899997 889999999999999999999999999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-----CCCCCCCc--cc--ceeeccccCCCceEEEeCCCCeEE
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNA--EK--IMKANKQGREDHSRITLTPDVIMH 230 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~--~~--~~~~~~~~~~~~~~~~~s~d~~i~ 230 (285)
.+|..+|+.+..+|+|.++.+-+.|.++++||.+... +..+.++. -. ..... +++..+.+-+++.|..++
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-wsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-WSPNGTKITAGSADRFVY 291 (338)
T ss_pred ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-ccCCCCccccccccceEE
Confidence 9999999999999999999999999999999986432 23333332 22 22232 345667888999999999
Q ss_pred EEEecccccceeE
Q 023246 231 VLRLQRRQTLAYR 243 (285)
Q Consensus 231 vwd~~~~~~~~~~ 243 (285)
+||......+.++
T Consensus 292 vwd~~~r~~lykl 304 (338)
T KOG0265|consen 292 VWDTTSRRILYKL 304 (338)
T ss_pred EeecccccEEEEc
Confidence 9998887666554
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=179.86 Aligned_cols=233 Identities=15% Similarity=0.209 Sum_probs=181.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d 81 (285)
..|.++.|-.|| .+||+|...|.|+|+|+.+.. .-..+.+|+.+|..+.|+|++. +|++|+ |
T Consensus 69 ~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~---------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV---------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred cceeEEEeecCC-eEEEccCCcCcEEEeccccHH---------------HHHHHhhccCceeEEEecccCCeEEEecCCC
Confidence 467889999986 999999999999999966532 2222389999999999999876 566665 7
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~ 160 (285)
+.+++||+.+. .....+.+|++- |.+.+|.+.++..+++|+.||.|++||++.. ..+.++.
T Consensus 133 ~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 133 KVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred ceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 88999999887 344578889976 9999984445668999999999999999876 5666665
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
|..+|..+.+-|.|..+++++. ..|++||+.++ +. ..+..|...+.++.... ++..+++++-|+.+++||+.+.+
T Consensus 195 -hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 195 -HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred -CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceE
Confidence 8899999999999999999985 58999999744 33 44545888887776544 55789999999999999988877
Q ss_pred cceeEeeeccccccCCCCCcCeEEEeecCCCCCCCC
Q 023246 239 TLAYRERRYNAADFESDEEEGETYLLGFSDSDASSE 274 (285)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 274 (285)
.......+.....++..+++ ...++|.++|-.+..
T Consensus 272 vv~s~~~~~pvLsiavs~dd-~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 272 VVHSWKYPGPVLSIAVSPDD-QTVVIGMSNGLVSIR 306 (487)
T ss_pred EEEeeecccceeeEEecCCC-ceEEEecccceeeee
Confidence 77666666555555544433 366678887755443
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.2e-26 Score=175.39 Aligned_cols=210 Identities=13% Similarity=0.296 Sum_probs=165.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--CCc--------CCCCCcccccccccCCCCCcceEEEEEec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPI--------SSDTPVDTFCPRHLIGKNNIHITGLAYSN 71 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 71 (285)
++..|-+++..+++ ..+++|+.|.+|+||+..+.... ... +.++....-.+...+.+|+.+|.++.|++
T Consensus 192 Hk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred cccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 35789999999986 89999999999999994322110 000 01111122234455589999999999999
Q ss_pred CCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246 72 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 151 (285)
Q Consensus 72 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 151 (285)
.+..+.++-|.+|+.||+.++ .....+.+.. .++++.+ .+..++|++|+.|..+++||.+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k---sl~~i~~-~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK---SLNCISY-SPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred CCceEeecccceEEEEEeecc----------------cceeeeecCc---ceeEeec-ccccceeeecCCCCceeecCCC
Confidence 544444456999999999988 5666665543 3899998 8999999999999999999988
Q ss_pred CCc---eEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246 152 GGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP 225 (285)
Q Consensus 152 ~~~---~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 225 (285)
++. ...++.+|++.|.++.|+|...+ |++++.|+++++||++..+ +..+.+|...+++..|. +..++++|+.
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGa 408 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGA 408 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccC
Confidence 654 45788899999999999998776 9999999999999998765 56788899999888774 4458999999
Q ss_pred CCeEEEEEe
Q 023246 226 DVIMHVLRL 234 (285)
Q Consensus 226 d~~i~vwd~ 234 (285)
|.+|+++.-
T Consensus 409 D~~l~i~~~ 417 (423)
T KOG0313|consen 409 DNKLRIFKG 417 (423)
T ss_pred cceEEEecc
Confidence 999999853
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=2.3e-25 Score=176.06 Aligned_cols=205 Identities=20% Similarity=0.346 Sum_probs=168.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...+..+.|+|++ .++++++.||.|++|++.+++ ....+ ..|...+.++.|++++++++++. +
T Consensus 51 ~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 114 (289)
T cd00200 51 TGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE--------------CVRTL-TGHTSYVSSVAFSPDGRILSSSSRD 114 (289)
T ss_pred CcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc--------------ceEEE-eccCCcEEEEEEcCCCCEEEEecCC
Confidence 4567899999975 899999999999999998764 22222 56788999999999988998876 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+.|++|++.+. +....+..|... +.++.| +++++++++++.++.|++||+++++.+..+..
T Consensus 115 ~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 115 KTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-SPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175 (289)
T ss_pred CeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-cCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence 99999999866 566777777755 999997 89899999998899999999999999989999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|...+.+++|+|+++.+++++.|+.|++||++.... ..+..+...+..+.+ .++..++++++.++.+++|++...+..
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE-cCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 989999999999999999999999999999987653 445456666666654 334667777777999999999876555
Q ss_pred eeE
Q 023246 241 AYR 243 (285)
Q Consensus 241 ~~~ 243 (285)
..+
T Consensus 255 ~~~ 257 (289)
T cd00200 255 QTL 257 (289)
T ss_pred EEc
Confidence 444
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-27 Score=168.70 Aligned_cols=199 Identities=14% Similarity=0.185 Sum_probs=164.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~- 79 (285)
++.+|.++.|++...+.+++++.|++|++|+...++ .+.++ .+|...|...+|+|.. .+++++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTF-NGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCc--------------ceEee-cCCccEEEEEecCCCCCCeEEEcc
Confidence 356899999999877899999999999999988665 22222 8899999999999965 577875
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL 158 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~ 158 (285)
.|+++++||++.. .....+..|... +.++.|...+.+.++||+.|+.|+.||++. ..++..
T Consensus 168 gd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 168 GDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred CCceEEEEEecCC----------------CceeEEEeccce--eEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 5999999999876 344458888866 999997445778899999999999999886 457889
Q ss_pred EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
+.+|.-.|..++|+|... .|++++.|=+++|||+..+. +.+...|.+-+..+.|.......+++.+-|..++||+
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 999999999999999765 49999999999999997443 4455567777777777666777999999999999997
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.3e-26 Score=194.35 Aligned_cols=256 Identities=17% Similarity=0.223 Sum_probs=191.3
Q ss_pred cceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCc-cc--CCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246 4 IRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH-WY--SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 78 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 78 (285)
..|.+++.+|++ ..+|||+ .|+.++||+...-- .. .....++ .......|.+.|+|+.|+|||++||+
T Consensus 14 ~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k------~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 14 KSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK------HLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred eeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccch------hheeeccccCceeEEEECCCCCeEee
Confidence 468899999986 8999999 99999999976321 00 0000111 12223789999999999999999999
Q ss_pred ec-CCcEEEEEcCCCCCCCC---CCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246 79 YN-DELVYLFEKNMGLGPSP---LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 154 (285)
Q Consensus 79 ~~-d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 154 (285)
|+ |..|.||..... ++.. .+-.......++....+.+|... |..++| +|++.++++++.|++|.+|+..+.+
T Consensus 87 GSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred ccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccccce
Confidence 76 888999998741 1111 11123345667888999999988 999995 9999999999999999999999999
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--------------------------------------
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------------------------------------- 196 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------------------------------------- 196 (285)
.+..+.+|.+.|..+.|+|-|++|++-+.|++|++|++..-.
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 999999999999999999999999999999999999853200
Q ss_pred ---------------CCCCCCCcccceeeccccC----CCc------------eEEEeCCCCeEEEEEeccccccee---
Q 023246 197 ---------------FPPLPDNAEKIMKANKQGR----EDH------------SRITLTPDVIMHVLRLQRRQTLAY--- 242 (285)
Q Consensus 197 ---------------~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~s~d~~i~vwd~~~~~~~~~--- 242 (285)
-..+-+|.+++......+. ... .+++|+.|++|.||.....+.+..
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 0012234443322211110 011 467899999999999876544433
Q ss_pred --------EeeeccccccCCCCCcCeEEEeecCCCC
Q 023246 243 --------RERRYNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 243 --------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
+.+++++..|-..+-+|.|+++.|++++
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 3678888888888888999999998764
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.3e-26 Score=178.05 Aligned_cols=207 Identities=15% Similarity=0.227 Sum_probs=166.6
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-ecCCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~~d~~ 83 (285)
=.+++|++...-.|++|+.|++|.+||+...... -....+...+.+|...|..++|++... +|++ +.|+.
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccC--------CccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 3568999987779999999999999999865421 011145556689999999999999775 5566 56999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEecc
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGD 162 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h 162 (285)
+.|||+++. +.+..+...+|..+ +.+++|...++..||+|+.|++|++||+++- ++++++.+|
T Consensus 252 L~iwD~R~~--------------~~~~~~~~~ah~~~--vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 252 LMIWDTRSN--------------TSKPSHSVKAHSAE--VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH 315 (422)
T ss_pred EEEEEcCCC--------------CCCCcccccccCCc--eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence 999999952 01566777888877 9999984446778899999999999999874 578999999
Q ss_pred cccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC-C--------------CCCCCCCcccceeeccccCCCceEEEeCCC
Q 023246 163 RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT-D--------------FPPLPDNAEKIMKANKQGREDHSRITLTPD 226 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 226 (285)
...|..|.|+|+... |++++.|+.+.+||+..- . +....+|...+....|.......+++.+.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 999999999997665 999999999999998532 1 123446888888888888888899999999
Q ss_pred CeEEEEEecc
Q 023246 227 VIMHVLRLQR 236 (285)
Q Consensus 227 ~~i~vwd~~~ 236 (285)
+.++||.+..
T Consensus 396 N~LqIW~~s~ 405 (422)
T KOG0264|consen 396 NILQIWQMAE 405 (422)
T ss_pred ceEEEeeccc
Confidence 9999998764
No 62
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=5.3e-25 Score=174.41 Aligned_cols=198 Identities=17% Similarity=0.291 Sum_probs=166.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d 81 (285)
...|++++|-|..+.+++||+.|++|.+|.=..- ..+.....|..-|+++.|+|||.++++ ++|
T Consensus 147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF---------------KFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF---------------KFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe---------------eeeecccccccceeeEEECCCCCeEEEecCC
Confidence 4579999999998999999999999999975432 334444789999999999999999999 679
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR- 157 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~- 157 (285)
|++.+||-.++ +.+..+. +|+.. |.+++| +|+++.+++++.|.++++||+.+.+++.
T Consensus 212 gki~iyDGktg----------------e~vg~l~~~~aHkGs--IfalsW-sPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 212 GKIYIYDGKTG----------------EKVGELEDSDAHKGS--IFALSW-SPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred ccEEEEcCCCc----------------cEEEEecCCCCcccc--EEEEEE-CCCCceEEEecCCceEEEEEeeccceEEE
Confidence 99999999988 6777777 78876 999995 9999999999999999999988765543
Q ss_pred ------------------------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 158 ------------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 158 ------------------------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
.+.+|...|+++..+|++++|.+|+.||.|.-|+...+
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 45688999999999999999999999999999999888
Q ss_pred CCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 196 DFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 196 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
....+ ..|...+..+... +...+++.+-|.++++.++..
T Consensus 353 ~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 353 TSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred cccccccccccceEEEEeec--CCCcEEEEecCCeEEEEeccc
Confidence 75544 5577777666432 334688899999999998754
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=5.5e-27 Score=183.70 Aligned_cols=196 Identities=13% Similarity=0.192 Sum_probs=163.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-e
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-Y 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~ 79 (285)
++.+|.+++|++++ ..|++++.|+.+++||+++|++... + .-...++|+.|.|++ +.|++ +
T Consensus 257 H~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~--------------f--~~~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 257 HRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSR--------------F--HLDKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred chhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEE--------------E--ecCCCceeeecCCCCCcEEEEec
Confidence 46789999999986 8999999999999999999984322 1 224467899999998 55555 5
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE--
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-- 157 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-- 157 (285)
+|+.|+.||++++ +.++.+..|-.. |..+.| -++++++++.++|+.+++|+.+....+.
T Consensus 320 sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i~F-~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 320 SDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDITF-VDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred CCCcEEEEeccch----------------HHHHHHHhhhhh--eeeeEE-ccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 7999999999998 788888888876 999998 7999999999999999999977543221
Q ss_pred --------------------------------------------EEeccc--ccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246 158 --------------------------------------------LMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWA 191 (285)
Q Consensus 158 --------------------------------------------~~~~h~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd 191 (285)
.+++|. +.-..+.|||||.+|++|+.||.+.+||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 223443 3456689999999999999999999999
Q ss_pred CCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 192 PMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.++.+ +..++.|.+.++...|-......+++++.+|.|++|+
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 98877 4678889888888888777788899999999999996
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-25 Score=181.59 Aligned_cols=232 Identities=17% Similarity=0.243 Sum_probs=183.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
...|+++.|+++| .+||+|..+|.|.|||..+.+ ....+...|...|-+++|. +..+.+|. +
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~ 279 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRD 279 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------ccccccCCcCceeEEEecc--CceEEEecCC
Confidence 4679999999986 899999999999999998776 4444423499999999998 55777765 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+.|..+|++... ....++.+|... |..+.| +++++++++|+.|+.+.|||....+++..+..
T Consensus 280 ~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~ 341 (484)
T KOG0305|consen 280 GKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE 341 (484)
T ss_pred CcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CCCCCeeccCCCccceEeccCCCccccEEEec
Confidence 999999998772 233347788866 999996 99999999999999999999988889999999
Q ss_pred ccccceEeEEcCCCC-eEEEEe--cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE-eCCCCeEEEEEeccc
Q 023246 162 DRHVVNQLEPHPHIP-MFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR 237 (285)
Q Consensus 162 h~~~v~~~~~~p~~~-~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~i~vwd~~~~ 237 (285)
|...|.+++|+|-.. .||+|+ .|++|++||..++...........|..+.|.....+++.+ |..+..|.||+..+.
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 999999999999544 588876 7999999999988765554566777788776666555555 566789999999765
Q ss_pred cccee----------EeeeccccccCCCCCcCeEEEeecCCC
Q 023246 238 QTLAY----------RERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 238 ~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
..+.. +..+|++..+.....++.+-++.+.+.
T Consensus 422 ~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 44333 355677777776666666777765553
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=172.84 Aligned_cols=232 Identities=12% Similarity=0.145 Sum_probs=183.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
..+|.-+.||||+ ++|++++.|..+.+||+.++.+ ......+|...+.+++|.|||..+++|+ |
T Consensus 269 ~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~--------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d 333 (519)
T KOG0293|consen 269 SQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDL--------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPD 333 (519)
T ss_pred cCceEEEEECCCC-CeEEecCchHheeeccCCcchh--------------hhhcccCcCCCcceeEEccCCceeEecCCC
Confidence 3578899999986 8999999999999999999983 3333345678899999999999888875 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+++..||+... .....++-+. ..|.+++. .++|+++++.+.|..+++++.++.........
T Consensus 334 r~i~~wdlDgn-----------------~~~~W~gvr~-~~v~dlai-t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 334 RTIIMWDLDGN-----------------ILGNWEGVRD-PKVHDLAI-TYDGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred CcEEEecCCcc-----------------hhhccccccc-ceeEEEEE-cCCCcEEEEEecccceeeechhhhhhhccccc
Confidence 99999999865 3344444332 24899997 99999999999999999999987666554443
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccC--CCceEEEeCCCCeEEEEEecccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
..+|+++.++.+++++++.=.+..+++||++..+ +..+.+|...-+.+..++. ++.++++||+|+.|+||+..+++
T Consensus 395 -~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 395 -EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred -cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 4689999999999998888889999999998665 4677787766544444443 55789999999999999999987
Q ss_pred cceeEe----------eec-cccccCCCCCcCeEEEeecCCC
Q 023246 239 TLAYRE----------RRY-NAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 239 ~~~~~~----------~~~-~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.+..+. ..| +...+++.+|+|.|-+++..+.
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 776652 233 3445788889999998887654
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5e-26 Score=170.77 Aligned_cols=209 Identities=16% Similarity=0.208 Sum_probs=176.1
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
|-..+|.|+.|+.|. .++|+|+.||.|++|.+.+|. |...+...|+..|+++.|+.|+..+.++
T Consensus 261 Mmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--------------CLRRFDRAHTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred ecccceEEEeecccH-HHhhccCcCCcEEEEEEecch--------------HHHHhhhhhccCeeEEEEccCcchhhccc
Confidence 556789999999985 999999999999999999998 7777767999999999999999877775
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.|.++++.-+.++ ++++.|++|..- |+...| .++|.++++++.||+|++|+..+.+++.++
T Consensus 326 fD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f-t~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 326 FDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF-TDDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred ccceEEEeccccc----------------hhHHHhcCcccc--ccceEE-cCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 5999999999998 899999999966 999998 999999999999999999999999999888
Q ss_pred ec--ccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCCCCCCCCcc--cceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 160 VG--DRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAE--KIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 160 ~~--h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
+. ..-+|+++..-|.+. .++.|....+|.+.++.+.-++.+..... .-+-....++.+..+.+...|+.++.|..
T Consensus 387 k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 387 KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 73 446788888888654 58899999999999998877766543221 11222224566778999999999999999
Q ss_pred cccccceeE
Q 023246 235 QRRQTLAYR 243 (285)
Q Consensus 235 ~~~~~~~~~ 243 (285)
.++.....+
T Consensus 467 ~sG~LE~tl 475 (508)
T KOG0275|consen 467 LSGKLERTL 475 (508)
T ss_pred ecCceeeee
Confidence 998776554
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-26 Score=187.68 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=161.2
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEec-CCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~ 83 (285)
+..+.|+.-..++|||++..|.|.+||+...-. + .....+..|...++++.|++.. .+|++|+ ||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------n------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~ 157 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------N------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGT 157 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcccc------c------hhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence 445778765568999999999999999985210 0 2333448899999999999976 4777865 999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEecc
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGD 162 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h 162 (285)
|++||++.. +...++.+.... |..+.|....+.+|+++.+.|.+.+||++.. ++...+.+|
T Consensus 158 vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 158 VKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred EEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 999999987 677777775544 9999983346789999999999999999864 467788899
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEe--CCCCeEEEEEecccc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQ 238 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--s~d~~i~vwd~~~~~ 238 (285)
.++|.++.|+|++.+|||||.|++|+||+..+.+...+ .....++-++.|++.....+++. ..|-.|+|||+++..
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 99999999999999999999999999999976553221 12345566666665544444443 347899999999988
Q ss_pred cceeE
Q 023246 239 TLAYR 243 (285)
Q Consensus 239 ~~~~~ 243 (285)
.+...
T Consensus 300 IP~~t 304 (839)
T KOG0269|consen 300 IPYAT 304 (839)
T ss_pred cccee
Confidence 77554
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=184.01 Aligned_cols=226 Identities=17% Similarity=0.288 Sum_probs=185.8
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..+++..|+. ..+++++.|++|++|+..++. ....-+.+|.+.|+++++..-+.+|++|+ |.
T Consensus 209 ~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~--------------~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 209 HVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGY--------------LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK 271 (537)
T ss_pred chhhhheeec---CeEEecCCCceeEEeecccce--------------EEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence 3566777773 589999999999999999886 34442389999999999998778999976 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
++++||..++ .+.+.+.+|... +.++.. ...++++|+.|.+|++|++.+++.+..+.+|
T Consensus 272 t~rvWd~~sg----------------~C~~~l~gh~st--v~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 272 TERVWDCSTG----------------ECTHSLQGHTSS--VRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred cEEeEecCCC----------------cEEEEecCCCce--EEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccc
Confidence 9999999998 899999999976 887764 5668888999999999999999999999999
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc-ccc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR-QTL 240 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~-~~~ 240 (285)
..+|.++..+ +.++++|+.|++|++|++...+ +..+.+|..++.++..... ..+++|+.|+.|++||+++. +.+
T Consensus 331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh
Confidence 9999999997 7899999999999999998776 5889999999988744331 58999999999999999998 555
Q ss_pred eeEee--------eccccccCCCCCcCeEEEeecCCCCC
Q 023246 241 AYRER--------RYNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 241 ~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
..+.. ......+.+...++.|.+++.++++.
T Consensus 407 ~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred hhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence 44422 12244456667777788887666543
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.7e-26 Score=171.96 Aligned_cols=220 Identities=11% Similarity=0.183 Sum_probs=168.0
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 81 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d 81 (285)
++.+|.|++=+|.....+|+|+.||.|+|||+...+ +...+ ..|.+.|+.|++.. +.+|.+|.|
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tvgdD 128 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTVGDD 128 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEecCC
Confidence 467899999999655789999999999999999776 44444 89999999999988 567777899
Q ss_pred CcEEEEEcCCCC----------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEE
Q 023246 82 ELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS 138 (285)
Q Consensus 82 ~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~ 138 (285)
.+|+.|-+.... .++...+..|+.....+++.+.-.... |.++.| +|... .|++
T Consensus 129 KtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsILas 205 (433)
T KOG0268|consen 129 KTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSILAS 205 (433)
T ss_pred cceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchheee
Confidence 999999865432 222334556666666677777766654 888887 66554 5566
Q ss_pred ecCCCeEEEEecCCCceEE------------------------------------------EEecccccceEeEEcCCCC
Q 023246 139 GSDCGHLFIWKKKGGKLVR------------------------------------------LMVGDRHVVNQLEPHPHIP 176 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~------------------------------------------~~~~h~~~v~~~~~~p~~~ 176 (285)
+..|+.|.+||+++++++. ...+|.+.|.+++|+|.|+
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred eccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 7789999999988776543 2346778899999999999
Q ss_pred eEEEEecCCcEEEEcCCCCCCCCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246 177 MFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 177 ~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
-|++||.|++|+||..+.+.-..+- ...+.++++.| +.++.++++||.|+.|++|.....+.+.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999999999877543321 12344566655 7788899999999999999877655543
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=183.23 Aligned_cols=211 Identities=16% Similarity=0.214 Sum_probs=173.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
-+.|++++.+||+ ..++||+.|.+|++||..--..... ....+-....... -.-...|.|+++||||++||.+- |
T Consensus 454 dgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~g--t~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 454 DGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPG--TQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred ccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCc--ccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEecc
Confidence 4679999999986 8999999999999999763211000 0000000000011 12356899999999999999985 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.+++||-+.+. +..-.+.+|.-+ |.++.+ +|+++.++||+.|.+|++|-+.-|.|-..+.+
T Consensus 530 nTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 530 NTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred CeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 99999999877 677888999977 999998 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
|...|.++.|.|....+.+||.|+.|+-||-..-+ ++.+.+|...+.+++. .+.+++++++|.|.+|++|.....
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav-~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV-SPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE-cCCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999899999999999999986654 6889999999877765 567779999999999999986554
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-25 Score=158.59 Aligned_cols=192 Identities=14% Similarity=0.210 Sum_probs=156.3
Q ss_pred cCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 56 LIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 56 ~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+..|.++|.++.|+-+|++.++ |+|.+|++|+...+ .+++++.+|... |..++. +.++.
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------~liktYsghG~E--VlD~~~-s~Dns 72 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------ALIKTYSGHGHE--VLDAAL-SSDNS 72 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------ceeeeecCCCce--eeeccc-ccccc
Confidence 34789999999999999998777 67999999999988 799999999977 999996 88999
Q ss_pred EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeec
Q 023246 135 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKAN 211 (285)
Q Consensus 135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~ 211 (285)
.+++|+.|..+.+||+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+... ++.+......+..+.
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999997764 334444445554443
Q ss_pred cccCCCceEEEeCCCCeEEEEEeccccc--------ceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 212 KQGREDHSRITLTPDVIMHVLRLQRRQT--------LAYRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 212 ~~~~~~~~~~~~s~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.. ...+++||.||+++.||++.++. +..+.+++++.....+.-++.+-+++-+.|
T Consensus 153 v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 153 VA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 33 33789999999999999998743 334456666665555544545555554444
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=161.83 Aligned_cols=197 Identities=16% Similarity=0.190 Sum_probs=154.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE-e
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-Y 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s-~ 79 (285)
-++|++++.+. .++|+|+.|.+|+|||+++.. ....+ -.|.+.|+++.|.++-. .|++ +
T Consensus 43 ~~sitavAVs~---~~~aSGssDetI~IYDm~k~~--------------qlg~l-l~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 43 AGSITALAVSG---PYVASGSSDETIHIYDMRKRK--------------QLGIL-LSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred ccceeEEEecc---eeEeccCCCCcEEEEeccchh--------------hhcce-eccccceEEEEecCCcchhheeeec
Confidence 46789999875 699999999999999999775 22222 67899999999999874 5555 5
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.||.|.+|+...- .++..+++|... |+.+++ +|.+++.++.+.|+.+++||+-.|+.-..+
T Consensus 105 dDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 105 DDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred CCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCccceee
Confidence 6999999999766 789999999987 999998 999999999999999999998776543322
Q ss_pred ec-c--------------------------------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC
Q 023246 160 VG-D--------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP 199 (285)
Q Consensus 160 ~~-h--------------------------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~ 199 (285)
.- + ...+.++.|- ++..|++|+.|+.|++||..... +..
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE 244 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee
Confidence 10 0 0113333333 34578888889999999988654 567
Q ss_pred CCCCcccceeeccc-cCCCceEEEeCCCCeEEEEEeccc
Q 023246 200 LPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+.+|..++..+... .++..+++++++||.|+|||++..
T Consensus 245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 88898888766532 335679999999999999999875
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.9e-25 Score=168.53 Aligned_cols=242 Identities=14% Similarity=0.179 Sum_probs=183.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
..+|+-+.||++| .+||+++.|.+..||.+..... +.....+.+|..+|..+.||||.++|+++ .+
T Consensus 224 tdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 224 TDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred CCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 5689999999975 9999999999999999875431 24445558999999999999999988885 58
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
..+.+||+.++ ...+.+... ....+.+++| .|+|..+++|+.|+.+..||+. |+.+...++
T Consensus 291 e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g 351 (519)
T KOG0293|consen 291 EVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG 351 (519)
T ss_pred HheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence 88999999998 455555433 1233888885 9999999999999999999998 666666665
Q ss_pred cc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
-+ ..|.+++..+||+++++.+.|..|++++.....-..+.....++... ..+.++++++.--.+..+++||+....++
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~-~iS~d~k~~LvnL~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF-SISKDGKLALVNLQDQEIHLWDLEENKLV 430 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEE-EEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence 33 67999999999999999999999999998765433233233333333 23556778888888999999999976544
Q ss_pred eeE------------eee-ccccccCCCCCcCeEEEeecCCCCCCCCCCC
Q 023246 241 AYR------------ERR-YNAADFESDEEEGETYLLGFSDSDASSEGGG 277 (285)
Q Consensus 241 ~~~------------~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 277 (285)
.+. .+. .+..-++++++++.||++.-..|+.-..-.|
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 332 122 2334567888899999998877765444433
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=165.50 Aligned_cols=217 Identities=16% Similarity=0.267 Sum_probs=173.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++..|+.++.... ..++.+++.|.+.+||.++++. |+... .+|.+.|++|+|++.+.++++++
T Consensus 147 HkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTaSG 210 (481)
T KOG0300|consen 147 HKDGIWHVAADST-QPICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTASG 210 (481)
T ss_pred cccceeeehhhcC-CcceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEccC
Confidence 4678888888875 4799999999999999999998 54444 89999999999999999999965
Q ss_pred CCcEEEEEc------CCCCCCCCCCCCCc----c--------------ccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 81 DELVYLFEK------NMGLGPSPLSLSPE----D--------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 81 d~~i~iwd~------~~~~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
|++-+||.. ..+..+...+-..+ + ..-..++..|.+|... |.+..| -..++.+
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~Q~ 287 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQQM 287 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCccee
Confidence 999999983 22221111111000 0 0001245667888876 888885 7889999
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeecccc
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQG 214 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~ 214 (285)
++++.|.+..+||+++++++..+.+|....+.++-+|..+++++.+.|.+.++||++... +..|.+|...+.... +
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v--F 365 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV--F 365 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE--E
Confidence 999999999999999999999999999999999999999999999999999999998543 456888888876663 3
Q ss_pred CCCceEEEeCCCCeEEEEEeccccc
Q 023246 215 REDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 215 ~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
..+..+++++.|.+|++||+++-+.
T Consensus 366 ~~dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 366 NTDDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ecCCceeecCCCceEEEeeeccccC
Confidence 4455789999999999999997543
No 75
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-25 Score=184.03 Aligned_cols=203 Identities=15% Similarity=0.240 Sum_probs=165.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-cC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-ND 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~d 81 (285)
..|+++.|++..+++|++|++||+|++||++..+. .. ...+....|+.++|+|.. ..|+++ ..
T Consensus 134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------------~~-t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------------KS-TFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cceeeeeeccCCccEEEecCCCceEEEEeeecccc--------------cc-cccccchhhhceeeccCCCceEEEecCC
Confidence 46899999999999999999999999999997752 11 125567899999999954 577776 58
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce--EEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM 159 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~ 159 (285)
|.+.+||++... ++...+..|.++ |.++.| +|++.+||||+.|++|+|||+.+++. +.++
T Consensus 199 G~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw-hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI 260 (839)
T KOG0269|consen 199 GYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW-HPNREWLATGGRDKMVKIWDMTDSRAKPKHTI 260 (839)
T ss_pred ceEEEeeccCch---------------hHHHHhhcccCc--eEEEee-cCCCceeeecCCCccEEEEeccCCCccceeEE
Confidence 999999998763 567788899987 999996 99999999999999999999886553 4444
Q ss_pred ecccccceEeEEcCCCCe-EEEEe--cCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 160 VGDRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
. ...+|..|+|-|..++ |++++ .|..|++||++..-+ .++..|...+..+.|...+...+.+++.||.+..-.+
T Consensus 261 n-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 261 N-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred e-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 4 2478999999998877 88876 588999999987754 5677788777777777767778999999999887777
Q ss_pred cccccc
Q 023246 235 QRRQTL 240 (285)
Q Consensus 235 ~~~~~~ 240 (285)
+....+
T Consensus 340 knat~p 345 (839)
T KOG0269|consen 340 KNATTP 345 (839)
T ss_pred hcccCh
Confidence 665443
No 76
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.4e-24 Score=160.82 Aligned_cols=215 Identities=16% Similarity=0.221 Sum_probs=159.0
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccc--ccccCCCCCcceEEEEEecCCC-EEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LLIS 78 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~i~~s~~~~-~l~s 78 (285)
+++.|+++.+.+..++++++|+.||.+.+||++...-... ..-.....| ...-..+|...|..+.|-|-.. +|.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999998889999999999999999985431000 000000011 2222367999999999999654 7777
Q ss_pred ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---CcEEEEecCCCeEEEEecCCCc
Q 023246 79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGK 154 (285)
Q Consensus 79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~~ 154 (285)
++ |.+++|||.++. +....|.-. ..|++-++ +|- .-++++|..+-.|++.|+.+|.
T Consensus 120 sSFDhtlKVWDtnTl----------------Q~a~~F~me---~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL----------------QEAVDFKME---GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ccccceEEEeecccc----------------eeeEEeecC---ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 65 999999999876 444444422 23666664 553 4578889999999999999999
Q ss_pred eEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC--CCCC--------------CCCCcccceeeccccCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPP--------------LPDNAEKIMKANKQGRED 217 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~ 217 (285)
..+++.+|.+.|.++.|+|...+ |++|+.||.|++||++.. ++.. -..|...+..+.| ..+.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~-tSd~ 258 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW-TSDA 258 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee-cccc
Confidence 99999999999999999999888 999999999999998632 2222 2234444444444 4456
Q ss_pred ceEEEeCCCCeEEEEEeccccc
Q 023246 218 HSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 218 ~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+++++...|..+++|+..+++.
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hhhhhccCccceEEeecccCcc
Confidence 6888889999999999987643
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=169.30 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=174.0
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc-CCcCCCCCcc-cccccccC-CCCCcceEEEEEecCCCEEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELLIS 78 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s 78 (285)
++-+|.+++++|++ .+.++++.+++|.-|++.+++.. ..++.+.-.. ...+.... .+|...+.+++.++||++|++
T Consensus 141 H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 141 HQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 45689999999986 89999999999999999998754 2222211011 00111111 389999999999999999999
Q ss_pred ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246 79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
|. |..|.||+..+. +.++.|.+|... |.+++| -.....+++++.|+.|++|+++....+.
T Consensus 220 gg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred cCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHHHH
Confidence 75 999999999988 788999999987 999998 6667789999999999999999888999
Q ss_pred EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
++.+|+..|.++....-++.+-.|+.|+++++|.+.......+.++...+-+. ..-++..+++||.+|.|.+|++.+.
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv--~~In~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCV--AFINDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeE--EEecccceeeccCCceEEEeeeccc
Confidence 99999999999988877776767779999999999554444455555444333 2345568999999999999999988
Q ss_pred ccceeE
Q 023246 238 QTLAYR 243 (285)
Q Consensus 238 ~~~~~~ 243 (285)
+.+...
T Consensus 359 kplf~~ 364 (479)
T KOG0299|consen 359 KPLFTS 364 (479)
T ss_pred CceeEe
Confidence 766554
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.3e-24 Score=158.09 Aligned_cols=210 Identities=15% Similarity=0.164 Sum_probs=155.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
+...|.+++|||....++++|+.||+||+|++.. +.. .......|.++|.+++|+.+|..++++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------~~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------VPKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------cchhhhccCCCeEEEEEccCCceEEeec
Confidence 3467899999996557888999999999999986 342 222336789999999999999988885
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec-CCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-PNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
.|+.+++||+.++ .+..+..|..+ |..+.|.. .....|++|+-|.+|+.||++...++.+
T Consensus 92 ~Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 92 CDKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred cCCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 5999999999987 66778889977 99998743 2345899999999999999997766553
Q ss_pred Eec-------------------------------------c----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-
Q 023246 159 MVG-------------------------------------D----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD- 196 (285)
Q Consensus 159 ~~~-------------------------------------h----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~- 196 (285)
+.- + .-.+.+++..++....+.|+.+|.+-+..+..+.
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 321 1 1246778888887778888888888888776542
Q ss_pred --CCCCCCCc------ccceeeccc--cCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246 197 --FPPLPDNA------EKIMKANKQ--GREDHSRITLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 197 --~~~~~~~~------~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
-..++-|. ..++.++.. .+....+++.+.||++.+||-+.+..+...+
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 12222221 123333322 2345689999999999999988877765543
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-25 Score=180.49 Aligned_cols=210 Identities=19% Similarity=0.300 Sum_probs=168.3
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL 86 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~i 86 (285)
++..++.++++|+||+.||.|++|++........ . .....+..|...|..+....+++.|+++ +|-+|++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s----~-----~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS----T-----PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc----c-----chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 5666666778999999999999999875431100 0 1122237899999999999999888885 5999999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--ceEE-------
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVR------- 157 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~------- 157 (285)
|+..... --+..++..|.+- |.++++..++...+++|+-|+.|.+||++++ +.+.
T Consensus 100 W~~~~~~--------------~~c~stir~H~DY--Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 100 WNAHKDN--------------TFCMSTIRTHKDY--VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred eecccCc--------------chhHhhhhcccch--heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 9998651 1367788889966 9999975678889999999999999999977 2222
Q ss_pred -EEe-cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 158 -LMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 158 -~~~-~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
.+. ++...|++++.++.+..+++|+..+.+++||+++.+ +..+.+|...+..+.. ..++..++++|+||+|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~-~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV-NDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE-cCCCCeEeecCCCceEEeeec
Confidence 222 778899999999999999999999999999998875 6788899888766543 567778999999999999999
Q ss_pred cccccceeE
Q 023246 235 QRRQTLAYR 243 (285)
Q Consensus 235 ~~~~~~~~~ 243 (285)
..++.+..+
T Consensus 243 gqQrCl~T~ 251 (735)
T KOG0308|consen 243 GQQRCLATY 251 (735)
T ss_pred cccceeeeE
Confidence 988776654
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-23 Score=151.92 Aligned_cols=211 Identities=11% Similarity=0.097 Sum_probs=173.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
..+++.+.|+.+| .+|++++.|.+..+|-...|+. +-+. .+|++.|+++..+-+.+.+++|+ |
T Consensus 10 ERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGer--------------lGty-~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 10 ERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGER--------------LGTY-DGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred ccccceEEecCCC-cEEEEecCCCCceEEEecCCce--------------eeee-cCCCceEEEEEecCCcceeeecccc
Confidence 3589999999986 8999999999999999888873 2222 89999999999999999999975 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-----CCeEEEEecC-----
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK----- 151 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~vwd~~----- 151 (285)
.++++||+.++ +.+..++.. .+|..+.| ++++++++...+ .+.|.++|++
T Consensus 74 ~t~kLWDv~tG----------------k~la~~k~~---~~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 74 QTAKLWDVETG----------------KQLATWKTN---SPVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred ceeEEEEcCCC----------------cEEEEeecC---CeeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 99999999999 677777643 33999998 999999887654 5679999988
Q ss_pred --CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246 152 --GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDV 227 (285)
Q Consensus 152 --~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 227 (285)
..+++..+..+.+.++.+-|.|-++.+++|..||.|.+||++++. +.....|...+..+ ..+++..+++++|.|.
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSRDRTYFITGSKDT 212 (327)
T ss_pred hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccCCcceEEecccCc
Confidence 445688888888999999999999999999999999999999875 34444566655433 3466777999999999
Q ss_pred eEEEEEecccccceeEeeecccc
Q 023246 228 IMHVLRLQRRQTLAYRERRYNAA 250 (285)
Q Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~ 250 (285)
+-++||+.+-+.+.......+..
T Consensus 213 takl~D~~tl~v~Kty~te~PvN 235 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERPVN 235 (327)
T ss_pred cceeeeccceeeEEEeeeccccc
Confidence 99999999988877764443333
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=162.65 Aligned_cols=204 Identities=18% Similarity=0.278 Sum_probs=171.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
..+.++...|. ...++||+.|..+.++|..+++. +.. +.+|...|+.+.|+|+...++++ .|.
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~--------------l~~-~~Gh~kki~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQI--------------LAT-LKGHTKKITSVKFHKDLDTVITASADE 283 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhh--------------hhh-ccCcceEEEEEEeccchhheeecCCcc
Confidence 46778888886 48999999999999999998863 222 38999999999999999888886 499
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG- 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~- 161 (285)
.|+||..... ........|..+ |+.+.. +|.|.||++++.|+...+.|++++..+.....
T Consensus 284 ~i~vws~~~~----------------s~~~~~~~h~~~--V~~ls~-h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 284 IIRVWSVPLS----------------SEPTSSRPHEEP--VTGLSL-HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred eEEeeccccc----------------cCcccccccccc--ceeeee-ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 9999999776 466677788877 999996 99999999999999999999999998866553
Q ss_pred -ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 162 -DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 162 -h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
..-.+++.+|+|||..|.+|..|+.++|||+..+. +..|++|.+++..+.. +.++.++++++.|+.|++||++.-..
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF-SENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe-ccCceEEEEEecCCeEEEEEehhhcc
Confidence 22458999999999999999999999999997775 6789999999877744 44566888999999999999998665
Q ss_pred ceeE
Q 023246 240 LAYR 243 (285)
Q Consensus 240 ~~~~ 243 (285)
...+
T Consensus 424 ~kt~ 427 (506)
T KOG0289|consen 424 FKTI 427 (506)
T ss_pred ccee
Confidence 5444
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.6e-24 Score=181.57 Aligned_cols=216 Identities=17% Similarity=0.306 Sum_probs=169.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC---cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 79 (285)
.+.|+|+.|+|+| .+||+|+.|+.|.||..... ..-..-.....+..+.....+.+|...|..++|+|++.+|+++
T Consensus 69 ~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 69 DGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred cCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 5689999999986 99999999999999998741 1111111233445555666668999999999999999999996
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR- 157 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~- 157 (285)
+ |++|.||+..+. +.+.++.+|... |..+.| +|-|+||++-++|++|++|++.+....+
T Consensus 148 s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred cccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceeeEe
Confidence 5 999999999987 799999999977 999996 9999999999999999999965422111
Q ss_pred ---------------------------------------------------EEecccccceEeEEcCC-----CC-----
Q 023246 158 ---------------------------------------------------LMVGDRHVVNQLEPHPH-----IP----- 176 (285)
Q Consensus 158 ---------------------------------------------------~~~~h~~~v~~~~~~p~-----~~----- 176 (285)
.|-+|..++.++.|+|. .+
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 45589999999999972 11
Q ss_pred -------eEEEEecCCcEEEEcCCCCCC-CCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 177 -------MFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 177 -------~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.+|+|+.|++|.||.....+. .... -....+....| ++++..++++|-||+|.++.++....
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW-spdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW-SPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE-cCCCCeEEEEecCCeEEEEEcchHHh
Confidence 478999999999999855542 2221 13455556655 66777899999999999999987644
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=178.38 Aligned_cols=197 Identities=13% Similarity=0.176 Sum_probs=151.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~- 80 (285)
-+.|..++||.. ++|++++.|++||||++...+ |+.. ..|..-|+||+|+| |.++|++|+
T Consensus 369 t~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~--------------CL~~--F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 369 TADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKE--------------CLKV--FSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred chhheecccccC--CeeEeccccccEEeecCCCcc--------------eeeE--EecCCeeEEEEecccCCCcEeeccc
Confidence 357889999994 699999999999999999877 3333 47999999999999 557999987
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|+.|+||++... .+.....-.. -|++++| .|+|++.+.|+.+|.+++|+....+....+.
T Consensus 431 D~KvRiWsI~d~-----------------~Vv~W~Dl~~--lITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 431 DGKVRLWSISDK-----------------KVVDWNDLRD--LITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred ccceEEeecCcC-----------------eeEeehhhhh--hheeEEe-ccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 999999999765 3333333333 3999998 9999999999999999999999777665443
Q ss_pred c--c------cccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC-CCCCCCCcccce-eeccccCCCceEEEeCCCCeE
Q 023246 161 G--D------RHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM-KANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 161 ~--h------~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d~~i 229 (285)
- | ...|+.+.|.|... .++..+.|..|||+|.+... +..+++....-- ..+....++.++++++.|..|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 1 23799999998655 37777789999999997765 355655433221 111233478899999999999
Q ss_pred EEEEeccc
Q 023246 230 HVLRLQRR 237 (285)
Q Consensus 230 ~vwd~~~~ 237 (285)
++|++...
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99998544
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=163.17 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=158.8
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
...|+.+.|+|+. ..+++++.|..|+||...... ++ .....|..+|+.+..+|.|.||+++ +|
T Consensus 261 ~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 261 TKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------EP-TSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred ceEEEEEEeccch-hheeecCCcceEEeecccccc--------------Cc-cccccccccceeeeeccCCcEEEEecCC
Confidence 3578899999975 899999999999999987654 22 2337899999999999999999986 59
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++....|++++ ..+...........+++.+| +|||..|.+|..||.|++||+.+...+..|.+
T Consensus 325 ~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 325 GTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred ceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 99999999988 45555544334345899998 99999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcc-cceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE-KIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
|.++|..++|+.+|.+|++++.|+.|++||++..+ +.++..... .+..+. ....+.+++.++.+-+|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~-fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS-FDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE-EcCCCCeEEeecceeEEEEEe
Confidence 99999999999999999999999999999998765 344432222 233332 234566888887777777766
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-22 Score=151.76 Aligned_cols=233 Identities=13% Similarity=0.146 Sum_probs=181.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~- 80 (285)
+++|+++.|+++| .++++++.|.+++|||..+++. ...+ ..+...+..++|..... .+.++.
T Consensus 14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~--------------~~ti-~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQ--------------VKTI-NSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCce--------------eeEe-ecccccccEEEEecCCceEEEccCC
Confidence 5789999999986 8999999999999999999873 3333 44556788889987665 444444
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
|.+|+..++... +.++.|.+|... |.+++. +|-+..+++++.|++|++||++..++...+
T Consensus 78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 899999999988 899999999976 999997 999999999999999999999988887776
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC---CCCCCCCC--cccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT---DFPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
... .-...+|+|+|-++|++.....|++||++.- ....+... ...-......++++++++..+..+.+++.|.
T Consensus 139 ~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLS--GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecC--CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 643 3344789999999999998889999999754 22332221 1222233334667788888888999999998
Q ss_pred cccccceeE-------------eeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246 235 QRRQTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSDAS 272 (285)
Q Consensus 235 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 272 (285)
-++..+..+ .+.|+..-+.+++++|++.+++.+.|..-
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 777655544 34566667778888899999998777543
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-22 Score=144.36 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=164.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLI 77 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~ 77 (285)
+++.|.|.+|+|.+ +++|+|+.|++|++..+....+... ....-+.-|.+.|..++|-.+ +.+|+
T Consensus 88 hkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred cCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 47899999999986 9999999999999977654332110 111222568999999999754 35888
Q ss_pred Ee--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246 78 SY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 155 (285)
Q Consensus 78 s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 155 (285)
++ .|..|++-|...+ +..+.+.+|+.- |.++- +-++-.+++|++|.+|++||++-..+
T Consensus 157 s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilaly--swn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILALY--SWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred ecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEEE--EecCcEEEccCCCceEEEEeeeccce
Confidence 85 3888888898888 788999999976 88874 44788999999999999999998888
Q ss_pred EEEEec--c-----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246 156 VRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDV 227 (285)
Q Consensus 156 ~~~~~~--h-----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 227 (285)
+.++.. | .+.|.+++..|.|++|++|-.|....+||++++. ++.+..|...+.++. .++...++++++.|.
T Consensus 217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAHYLLTCSYDM 295 (350)
T ss_pred eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCceEEEEecccc
Confidence 877742 2 3579999999999999999999999999999887 577877887776653 355667999999999
Q ss_pred eEEEEEeccc
Q 023246 228 IMHVLRLQRR 237 (285)
Q Consensus 228 ~i~vwd~~~~ 237 (285)
.|++-|++..
T Consensus 296 ~ikltdlqgd 305 (350)
T KOG0641|consen 296 KIKLTDLQGD 305 (350)
T ss_pred eEEEeecccc
Confidence 9999999863
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.4e-24 Score=152.45 Aligned_cols=227 Identities=12% Similarity=0.136 Sum_probs=170.6
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEec-CCcE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELV 84 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~-d~~i 84 (285)
.+..+-- +.+|||+++|++|+|+..+..... .+...+.+|.++|+.++|.. .|.+||+++ ||+|
T Consensus 16 da~lDyy-gkrlATcsSD~tVkIf~v~~n~~s------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 16 DAQLDYY-GKRLATCSSDGTVKIFEVRNNGQS------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred Hhhhhhh-cceeeeecCCccEEEEEEcCCCCc------------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 3333333 379999999999999999865411 22222389999999999987 788999976 9999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCC-c--eEEEE
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K--LVRLM 159 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~-~--~~~~~ 159 (285)
.||.-..+ ++.....+..|... +++++| .|. |-.|++++.||.|.+.+.+.. . .....
T Consensus 83 IiWke~~g--------------~w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 83 IIWKEENG--------------RWTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred EEEecCCC--------------chhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 99998776 34566677788876 999996 664 567899999999999997754 2 23345
Q ss_pred ecccccceEeEEcCC---C-----------CeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCC---Cce
Q 023246 160 VGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGRE---DHS 219 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~---~-----------~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~ 219 (285)
..|.-.|++++|.|. | +.|++|+.|..|+||+..... -.++.+|...+....|++.. ...
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 689999999999986 4 469999999999999998754 24588899999888887763 458
Q ss_pred EEEeCCCCeEEEEEeccccc-------------ceeEeeeccccccCCCCCcCeEEEe
Q 023246 220 RITLTPDVIMHVLRLQRRQT-------------LAYRERRYNAADFESDEEEGETYLL 264 (285)
Q Consensus 220 ~~~~s~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~v~~~ 264 (285)
+++++.||++.||..+.... +-...++..+..|+....++.+.++
T Consensus 226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred eEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 89999999999998764311 1112345555556655555556555
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.6e-24 Score=167.60 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=154.3
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..|.+++|+|..+.-+|+.+. -.+.||+..+.... +.+ ......|.++.|-.||++|++|. .|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~--------------k~~-srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR--------------KTF-SRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhh--------------hhH-HhhccceeEEEeecCCeEEEccCCcC
Confidence 478999999988877777665 57899998876522 111 34467899999999999999986 89
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
.|+|||..+. ..++.+.+|+.+ +....|...++..+++|++|+.+++||+.+......+.+|
T Consensus 91 ~V~vfD~k~r----------------~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 91 HVKVFDMKSR----------------VILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred cEEEeccccH----------------HHHHHHhhccCc--eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 9999997654 467888999977 8888883345677888999999999999988877788999
Q ss_pred cccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 163 RHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 163 ~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+..|.+.+|+|... +++|||.||+|++||++... +.++ .|..++-.....+ .+.. ++......++|||+.++.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp-sgs~-iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP-SGSL-IASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC-CCCE-EEEcCCCeEEEEEecCCce
Confidence 99999999999655 69999999999999998763 2333 3666654443322 2233 4444567899999996544
Q ss_pred c
Q 023246 240 L 240 (285)
Q Consensus 240 ~ 240 (285)
+
T Consensus 230 l 230 (487)
T KOG0310|consen 230 L 230 (487)
T ss_pred e
Confidence 3
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.5e-24 Score=171.25 Aligned_cols=227 Identities=16% Similarity=0.215 Sum_probs=172.1
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCCCEEEEec-CC
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYN-DE 82 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~~~l~s~~-d~ 82 (285)
-|+.++...+ ++.|++++.|-+|++|+...+. .+|...+ ..|...|.|+++ .++..++|+|. |+
T Consensus 75 WVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 75 WVNDIILCGN-GKTLISASSDTTVKVWNAHKDN------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred HHhhHHhhcC-CCceEEecCCceEEEeecccCc------------chhHhhh-hcccchheeeeecccCceeEEecCCCc
Confidence 3555555554 4799999999999999998653 2266666 889999999999 67777888865 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.|.+||++++......++.. .....+. ++..+ |++++. ++.+..+++|+..+.+++||.++++.+..+.+
T Consensus 141 ~IflWDin~~~~~l~~s~n~------~t~~sl~sG~k~s--iYSLA~-N~t~t~ivsGgtek~lr~wDprt~~kimkLrG 211 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNN------VTVNSLGSGPKDS--IYSLAM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG 211 (735)
T ss_pred cEEEEEccCcchhhhhhccc------cccccCCCCCccc--eeeeec-CCcceEEEecCcccceEEeccccccceeeeec
Confidence 99999999773200000000 0111222 66655 999996 89999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
|+..|..+..+++|..+++++.||+|++||+..++ +.++..|...+-.... .+.-..+++|+.|+.|..-|+++....
T Consensus 212 HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~-~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 212 HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS-SPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee-CCCcceEEecCCCCcEEecccCCchhh
Confidence 99999999999999999999999999999997765 6777777777544432 344558999999999999999986443
Q ss_pred eeE-eeeccccccCCC
Q 023246 241 AYR-ERRYNAADFESD 255 (285)
Q Consensus 241 ~~~-~~~~~~~~~~~~ 255 (285)
..+ +.......+..+
T Consensus 291 tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLH 306 (735)
T ss_pred eEeecCCCchhhhhhc
Confidence 333 333333344444
No 90
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.9e-23 Score=171.01 Aligned_cols=232 Identities=12% Similarity=0.150 Sum_probs=174.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc--------------------cc-----ccccc
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD--------------------TF-----CPRHL 56 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~ 56 (285)
++..|.++++|.++ ..+++| ..++++||+..+.+++..+...-.+. -| .....
T Consensus 372 HR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred chhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence 46678888888864 444444 45788888888887766655321110 00 11223
Q ss_pred CCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246 57 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 57 ~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (285)
..+|.+.|+.++.+|+++.+++++ |.+|++||...-.. .+.+.. ..-+.+..+++.-. +. |.++.+ +|++++
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLel~-dd--vL~v~~-Spdgk~ 522 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLELE-DD--VLCVSV-SPDGKL 522 (888)
T ss_pred hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEecc-cc--EEEEEE-cCCCcE
Confidence 368999999999999999888865 99999999864421 111000 00111222333322 22 999998 999999
Q ss_pred EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeecccc
Q 023246 136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQG 214 (285)
Q Consensus 136 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 214 (285)
++.+--|.+|++|-+.+-+...++.+|.-||.+|.++|++++++||+.|+.|++|-+.-+.. ..+.+|...+.++...+
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999987764 67888999988886644
Q ss_pred CCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 215 REDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 215 ~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
....+.+++.|+.++-||-.....++.+
T Consensus 603 -~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 603 -KTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred -cceeEEEecCcceEEeechhhhhhheee
Confidence 6678899999999999998776665554
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=151.92 Aligned_cols=190 Identities=15% Similarity=0.196 Sum_probs=149.3
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..|-.++|+|.++.+|++++.|.+|++||++.+++. ..+ ...+.=.-+.|+|+|.+++.++ |.
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------------~~i--~~~~eni~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------------ARI--ETKGENINITWSPDGEYIAVGNKDD 128 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEeccCcEE--------------EEe--eccCcceEEEEcCCCCEEEEecCcc
Confidence 357789999998999999999999999999988742 222 1122334578999998888864 88
Q ss_pred cEEEEEcCCCCCCC-------------------------CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 83 LVYLFEKNMGLGPS-------------------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 83 ~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
.|...|.++..... ...+.+-..+..+++..++.|... ..++.| +|+|++++
T Consensus 129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn--CicI~f-~p~GryfA 205 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN--CICIEF-DPDGRYFA 205 (313)
T ss_pred cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc--eEEEEE-CCCCceEe
Confidence 88888887654111 112222224556778888899966 899998 99999999
Q ss_pred EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccc
Q 023246 138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ 213 (285)
Q Consensus 138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 213 (285)
+|+.|..+.+||++.--+++.+..+.-+|..+.|+.+|++||++++|..|-|=+..++. +.+++ +.++.+.+.|-
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWH 281 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWH 281 (313)
T ss_pred eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEec
Confidence 99999999999999888999999999999999999999999999999999998887775 44553 55566666663
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=165.72 Aligned_cols=222 Identities=11% Similarity=0.107 Sum_probs=159.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEec
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~ 80 (285)
...|++++|++.+ ..|++.+..-..+|+|-...+.....+.++.+.. .... ++|...+++.+|+|..+ +|.++.
T Consensus 214 ~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D--m~nT-KGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 214 THQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD--MYNT-KGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred ccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhh--hhcc-CCceeeeeccccccCcccceEEecC
Confidence 3578999999986 6777777778999999876665555554444432 2222 79999999999999875 555567
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc---cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc--e
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L 155 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~ 155 (285)
|++++||++.... +..+.+... .....++.++| +++++.|++|..||.|.+|+..... +
T Consensus 290 DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~tsC~~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p 353 (641)
T KOG0772|consen 290 DGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPVTSCAW-NRDGKLIAAGCLDGSIQIWDKGSRTVRP 353 (641)
T ss_pred CCcEEEEecCCch---------------hheeEEeeccCCCcccCceeeec-CCCcchhhhcccCCceeeeecCCccccc
Confidence 9999999998662 333444321 11233788886 9999999999999999999975332 2
Q ss_pred -EEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeec-cccCCCceEEEeCC----
Q 023246 156 -VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKAN-KQGREDHSRITLTP---- 225 (285)
Q Consensus 156 -~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~---- 225 (285)
...-.+|.. .|+++.|+++|++|++-+.|+++++||+++.+ +....+.....-..+ +.+++.+++++|+.
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 233346776 89999999999999999999999999998765 333333222222222 24556778888765
Q ss_pred --CCeEEEEEecccccceeEe
Q 023246 226 --DVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 226 --d~~i~vwd~~~~~~~~~~~ 244 (285)
.|.+++||..+...++.+.
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred CCCceEEEEeccceeeEEEec
Confidence 3889999988777666653
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=151.98 Aligned_cols=200 Identities=15% Similarity=0.215 Sum_probs=165.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d 81 (285)
+.-|.+++|+.|. ++|+||+.++.+||||+...+ .+..-+.+|++.|..+.|....+.+++ +.|
T Consensus 100 khivk~~af~~ds-~~lltgg~ekllrvfdln~p~--------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 100 KHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPK--------------APPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hheeeeEEecccc-hhhhccchHHHhhhhhccCCC--------------CCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 4568899999985 899999999999999998776 334444899999999999998887777 569
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|++||.+++ ..++++.... + |+++.+ +++|+++.++. .+.|.+||..+..++..++.
T Consensus 165 ~tVRLWD~rTg----------------t~v~sL~~~s-~--VtSlEv-s~dG~ilTia~-gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 165 KTVRLWDHRTG----------------TEVQSLEFNS-P--VTSLEV-SQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred CceEEEEeccC----------------cEEEEEecCC-C--Ccceee-ccCCCEEEEec-CceeEEeccccccceeeccC
Confidence 99999999998 6777776432 3 899997 89998776654 68899999999888887764
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC-CCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
...|.+...+|+...++.|++|..++.||..++. +.. .++|..++.++.. ++++...++||.||+|++|.....+.
T Consensus 224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF-SPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE-CCCCceeeccCCCceEEEEEecCCCc
Confidence 3578999999999999999999999999998876 333 3788888877754 66778889999999999998877654
Q ss_pred c
Q 023246 240 L 240 (285)
Q Consensus 240 ~ 240 (285)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 3
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=7.6e-24 Score=158.07 Aligned_cols=228 Identities=11% Similarity=0.162 Sum_probs=163.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
-.+|+++.|+|.. .+|++|+.|++|+++|+...... ..........+|.++.|+|.|.+|+.|. -
T Consensus 172 ~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saK-------------rA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 172 VDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAK-------------RAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred cCcccceeecchh-heEEeccCCCeEEEEecccHHHH-------------HHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 4589999999975 89999999999999999754311 1111123356899999999999999986 6
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceE---eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV---YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
.++++||+++. ++... -..|... |+++.| ++.+++.++++.||.|++||--+++++.+
T Consensus 238 p~~rlYdv~T~----------------QcfvsanPd~qht~a--i~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 238 PTLRLYDVNTY----------------QCFVSANPDDQHTGA--ITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred CceeEEeccce----------------eEeeecCcccccccc--eeEEEe-cCCccEEEEeccCCcEEeeccccHHHHHH
Confidence 88999999876 22111 1245555 999998 99999999999999999999888999988
Q ss_pred Ee-ccc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCc---ccceeeccccC-CCceEEEe-CCCCeEE
Q 023246 159 MV-GDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA---EKIMKANKQGR-EDHSRITL-TPDVIMH 230 (285)
Q Consensus 159 ~~-~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-s~d~~i~ 230 (285)
+. +|. ..|.+..|..+++++++.+.|..+++|.+.+++ +....+.. .........+. ...+++.- -..+.+.
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc 378 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC 378 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence 85 565 579999999999999999999999999998775 34443321 11111111122 23343332 2236778
Q ss_pred EEEeccc-----------ccceeEeeeccccccCCCCCcCeEEE
Q 023246 231 VLRLQRR-----------QTLAYRERRYNAADFESDEEEGETYL 263 (285)
Q Consensus 231 vwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (285)
-||.++. ....++.++|....+...+++-+.-+
T Consensus 379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 8887764 34456677887777766666544433
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=160.42 Aligned_cols=212 Identities=12% Similarity=0.123 Sum_probs=167.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
++|.+++-+|.| .+|+.|+..|.+++|.+.+|.++. .+ .+|=.+|+++.|+.||.+|+++ .||
T Consensus 82 g~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~--------------v~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 82 GPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLN--------------VL-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cceeeeecCCCc-eEEEeecccCcEEEEEeccccHHH--------------HH-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 579999999975 888888899999999999997432 22 7888999999999999999996 599
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
.|.+|.+..-.. ...-...+..+.|..|.-+ |+++.+ .+ ...++++++.|.++++||+..+.++.++.
T Consensus 146 ~V~vW~l~~lv~-------a~~~~~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 146 AVLVWLLTDLVS-------ADNDHSVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred cEEEEEEEeecc-------cccCCCccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 999999865421 1111134677889999976 998876 43 45689999999999999999999988877
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-----------------CCCCCCCcc--cceeeccccCCCceEE
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE--KIMKANKQGREDHSRI 221 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~~ 221 (285)
- ...+.+++.+|.+..+..|+.+|.|.+.++.... ...+.+|.. .+.++. .+.++.+++
T Consensus 216 f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~DgtlLl 293 (476)
T KOG0646|consen 216 F-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-ISTDGTLLL 293 (476)
T ss_pred c-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-EecCccEEE
Confidence 4 4689999999999999999999999887753221 123445555 444443 356777999
Q ss_pred EeCCCCeEEEEEecccccceeE
Q 023246 222 TLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 222 ~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
+|+.||.+.|||+.+++.+..+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHH
Confidence 9999999999999988766554
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-24 Score=177.67 Aligned_cols=202 Identities=18% Similarity=0.274 Sum_probs=169.9
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV 84 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i 84 (285)
|.++..-. ..+.+++|+.|..+-+|.+.... +... +.+|..+|.++.|++...+|++|. +|+|
T Consensus 31 v~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 31 VGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hceeeeec-cceeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhcccccCCce
Confidence 34444423 24789999999999999987543 2222 389999999999999999988875 9999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 164 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 164 (285)
++||+... +.++++.+|... +..+.| +|-+.|+++|+.|+.+++||.+...+.+.+.+|..
T Consensus 95 K~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 95 KVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred eeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99999987 788999999987 999997 99999999999999999999998889999999999
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.|..+.|+|+|++++.++.|.+++|||+..+++ ..+..|...+..+. ..+..-++.+|+.|+++++||+++.+.+...
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 999999999999999999999999999988875 67887888876665 2333447788999999999999977665444
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=152.52 Aligned_cols=232 Identities=15% Similarity=0.195 Sum_probs=183.2
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
+++.|++...+.+ ..+.|+++.|-+-+|||.-++..+.. ..|..-|.+++|+.|.++|++| .
T Consensus 58 hkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhs----------------f~hkhivk~~af~~ds~~lltgg~ 120 (334)
T KOG0278|consen 58 HKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHS----------------FEHKHIVKAVAFSQDSNYLLTGGQ 120 (334)
T ss_pred cCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhh----------------hhhhheeeeEEecccchhhhccch
Confidence 4678888888884 58899999999999999999873322 3677789999999999998886 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
++.++|||++... .+...+.+|... |..+-| ....+.+++.++|++|++||.+++..+.++.
T Consensus 121 ekllrvfdln~p~---------------App~E~~ghtg~--Ir~v~w-c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 121 EKLLRVFDLNRPK---------------APPKEISGHTGG--IRTVLW-CHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred HHHhhhhhccCCC---------------CCchhhcCCCCc--ceeEEE-eccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 9999999998764 466788899977 999986 7888889998999999999999999999988
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
- ..+|+++.++++|++|.++- -+.|.+||...-.+ .... ....+ ......+....+++|..|..++.||..++..
T Consensus 183 ~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV-~SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 183 F-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNV-ESASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred c-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Ccccc-ccccccCCCceEEecCcceEEEEEeccCCce
Confidence 4 57899999999998876654 56899999977654 2222 11112 1112234456899999999999999988754
Q ss_pred cee-----------EeeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246 240 LAY-----------RERRYNAADFESDEEEGETYLLGFSDSDAS 272 (285)
Q Consensus 240 ~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 272 (285)
+.. +.++|++...++++++|.+.++-...++-.
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 433 367888888888888888888876665543
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.3e-23 Score=160.20 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=155.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+...|.+++.+||+ .+||+|+.|..|.||+..+.+ .++. +.+|.+.|.+++|-.....+.+ +.
T Consensus 201 h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~e--------------hv~~-~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 201 HVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLE--------------HVKV-FKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ccceeEEEEEcCCC-cEEEecCCCceEEEecCcccc--------------hhhc-ccccccceeeeeeecCccceeeeec
Confidence 34678999999986 999999999999999999986 2333 3899999999999987766666 56
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|..|++|++... ..+.++.+|++. |.++.. ..-++.+-.|+.|+++++|++.. +.-..+.
T Consensus 265 Drsvkvw~~~~~----------------s~vetlyGHqd~--v~~Ida-L~reR~vtVGgrDrT~rlwKi~e-esqlifr 324 (479)
T KOG0299|consen 265 DRSVKVWSIDQL----------------SYVETLYGHQDG--VLGIDA-LSRERCVTVGGRDRTVRLWKIPE-ESQLIFR 324 (479)
T ss_pred CCceEEEehhHh----------------HHHHHHhCCccc--eeeech-hcccceEEeccccceeEEEeccc-cceeeee
Confidence 999999999877 688899999987 999986 55666777777999999999953 3344567
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC-CCc-----------ccceeeccccCCCceEEEeCCCC
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNA-----------EKIMKANKQGREDHSRITLTPDV 227 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~s~d~ 227 (285)
+|.+.+.|++|-.+ ..|++|+.+|.|.+|++...++ .... .|. .++..+. ..+...++++|+.+|
T Consensus 325 g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 325 GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSDLLASGSWSG 402 (479)
T ss_pred CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCceEEecCCCC
Confidence 88889999999754 5789999999999999866552 1111 010 1222222 234567999999999
Q ss_pred eEEEEEeccc
Q 023246 228 IMHVLRLQRR 237 (285)
Q Consensus 228 ~i~vwd~~~~ 237 (285)
.|++|-+..+
T Consensus 403 ~vrLW~i~~g 412 (479)
T KOG0299|consen 403 CVRLWKIEDG 412 (479)
T ss_pred ceEEEEecCC
Confidence 9999998876
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.2e-23 Score=166.87 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=162.9
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEE
Q 023246 9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 87 (285)
Q Consensus 9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iw 87 (285)
++|+.. +.||+|. ...|.+|+..+++.. .+..-+...|+++.|+++|.+|+.|. +|.|.||
T Consensus 183 ldWss~--n~laVal-g~~vylW~~~s~~v~---------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iw 244 (484)
T KOG0305|consen 183 LDWSSA--NVLAVAL-GQSVYLWSASSGSVT---------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIW 244 (484)
T ss_pred hhcccC--CeEEEEe-cceEEEEecCCCceE---------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEE
Confidence 578863 5777665 468999999988622 11122377899999999999999975 9999999
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eeccccc
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHV 165 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~h~~~ 165 (285)
|.... +.+..+.+ |... |.+++| . +..+.+|+.++.|..+|++..+.... +.+|...
T Consensus 245 D~~~~----------------k~~~~~~~~h~~r--vg~laW-~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe 303 (484)
T KOG0305|consen 245 DVKEQ----------------KKTRTLRGSHASR--VGSLAW-N--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE 303 (484)
T ss_pred ehhhc----------------cccccccCCcCce--eEEEec-c--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence 99887 67788887 7755 999996 4 77899999999999999998876555 8899999
Q ss_pred ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEe--CCCCeEEEEEeccccccee
Q 023246 166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQTLAY 242 (285)
Q Consensus 166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~i~vwd~~~~~~~~~ 242 (285)
|..++|++++.++|+|+.|+.+.|||..... ...+..|...+..+.|++....+|++| +.|+.|++||..++..+..
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 9999999999999999999999999995544 577888999999999999888888884 6699999999988765554
Q ss_pred E
Q 023246 243 R 243 (285)
Q Consensus 243 ~ 243 (285)
+
T Consensus 384 v 384 (484)
T KOG0305|consen 384 V 384 (484)
T ss_pred c
Confidence 4
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1e-22 Score=155.46 Aligned_cols=218 Identities=18% Similarity=0.221 Sum_probs=161.5
Q ss_pred ccceeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCc-ccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe
Q 023246 3 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~ 79 (285)
.+.++.+.-++.+ ..+.|+-+..|.|+||++...- .+...+....-..+.+.....+|...-+++.|||-.. .|++|
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3456666666652 3577777889999999986321 1111111111112223333388999999999999443 46666
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc---
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK--- 154 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~--- 154 (285)
. -+.|++|...++. +.. -..-|.+|... |-.++| +|. ...|++|+-||.|+|||++.+.
T Consensus 231 Dc~~~I~lw~~~~g~---------W~v----d~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGS---------WKV----DQRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ccccceEeeeeccCc---------eee----cCccccccccc--hhhhcc-CCccCceEEeeecCceEEEEEecCCCccc
Confidence 4 8889999998762 111 12335568765 999995 775 5678999999999999999873
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 230 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~ 230 (285)
++.+ ++|.+.|+.+.|+....+||+|+.||+++|||++.-+ +.++..|..++.++.|...+...+++++.|.+|.
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred eeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 3433 7899999999999998899999999999999998655 3578889999999999888888999999999999
Q ss_pred EEEeccc
Q 023246 231 VLRLQRR 237 (285)
Q Consensus 231 vwd~~~~ 237 (285)
+||+.-.
T Consensus 374 iWDlsvE 380 (440)
T KOG0302|consen 374 IWDLSVE 380 (440)
T ss_pred EEEeecc
Confidence 9999743
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=6.5e-24 Score=163.65 Aligned_cols=234 Identities=14% Similarity=0.216 Sum_probs=186.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+.++|..+.|-++ ...|++|+.|..|++|+....+. .....+.+..++|+.+.|.++++.+++ +.
T Consensus 174 h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 174 HEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred cccccceeEEccC-cchhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 4678999999995 48999999999999999986652 223333677889999999999986555 67
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|+.+++|++... +...++.+|... |+++.| ......+++|+.|.+|+.||+....+..++.
T Consensus 240 d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 240 DKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred CCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheecccc
Confidence 999999999988 789999999988 999997 5555559999999999999999888887765
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
. .+.+..++.+ ...++++-.|++|++||.++... ...+.+ +.+..+ ....+...+++.+.|.++.+.|+++.+.
T Consensus 301 ~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl-~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 301 P-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSL-DLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred c-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeE-eeccCCeEEeeecCCCceeeeecccccE
Confidence 3 4567777765 45688999999999999988765 344333 344333 3355666778889999999999998766
Q ss_pred ceeE--------------eeeccccccCCCCCcCeEEEeecCCCCCCC
Q 023246 240 LAYR--------------ERRYNAADFESDEEEGETYLLGFSDSDASS 273 (285)
Q Consensus 240 ~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (285)
...+ .++|+..+++.++.+|.||++....++.+.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 5543 478889999999999999999988876543
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=156.96 Aligned_cols=202 Identities=10% Similarity=0.063 Sum_probs=161.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
.++|+++.|.+++ ..+++.+.|+.+++|++...+ ...++ .+|++.|+++.|......+++++ |
T Consensus 219 ~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r--------------~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~D 282 (459)
T KOG0288|consen 219 LGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLR--------------LRHTL-SGHTDKVTAAKFKLSHSRVVSGSAD 282 (459)
T ss_pred CCCcceeeecCCC-ceEEeecCCCceeeeeccchh--------------hhhhh-cccccceeeehhhccccceeecccc
Confidence 5689999999987 788889999999999999875 23333 88999999999988776678865 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.+|++||+... .+.+++.... .+..+.. + ...+++|..|+.|++||.++..+......
T Consensus 283 RtiK~WDl~k~----------------~C~kt~l~~S---~cnDI~~-~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~ 340 (459)
T KOG0288|consen 283 RTIKLWDLQKA----------------YCSKTVLPGS---QCNDIVC-S--ISDVISGHFDKKVRFWDIRSADKTRSVPL 340 (459)
T ss_pred chhhhhhhhhh----------------heeccccccc---cccceEe-c--ceeeeecccccceEEEeccCCceeeEeec
Confidence 99999999876 4554443222 1666665 3 56788999999999999999999999987
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC-CCCC---cccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+. .|+++..++++..+++++.|.++.+.|+++..+.. +... ...-......++++.|+++|+.||.|+||++.++
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 65 99999999999999999999999999999876532 2111 1111333345778889999999999999999988
Q ss_pred ccceeE
Q 023246 238 QTLAYR 243 (285)
Q Consensus 238 ~~~~~~ 243 (285)
+....+
T Consensus 420 KlE~~l 425 (459)
T KOG0288|consen 420 KLEKVL 425 (459)
T ss_pred eEEEEe
Confidence 776554
No 103
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=8.4e-23 Score=155.98 Aligned_cols=161 Identities=17% Similarity=0.318 Sum_probs=129.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d 81 (285)
+.=.+++|||...-.|++|..-+.|++|...++... . ...-+ .+|+..|-.++|||... .|++++ |
T Consensus 212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~----v-------d~~Pf-~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK----V-------DQRPF-TGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccceeeecccccccccccCccccceEeeeeccCcee----e-------cCccc-cccccchhhhccCCccCceEEeeecC
Confidence 344679999965457999999999999999987632 1 11112 56999999999999875 788865 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC---CceEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVRL 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~ 158 (285)
++|+|||++.+. .+.....+.|... |+.+.| +....+|++|++||+++|||++. ++++.+
T Consensus 280 gsIrIWDiRs~~--------------~~~~~~~kAh~sD--VNVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 280 GSIRIWDIRSGP--------------KKAAVSTKAHNSD--VNVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred ceEEEEEecCCC--------------ccceeEeeccCCc--eeeEEc-cCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence 999999999872 1222333677766 999996 87777999999999999999875 678999
Q ss_pred EecccccceEeEEcCCCCe-EEEEecCCcEEEEcCC
Q 023246 159 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM 193 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~ 193 (285)
++.|..+|+++.|+|.... |++++.|.+|.+||+.
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999999999997654 8888999999999985
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=8.4e-22 Score=144.19 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=165.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+.+.|+|++.+.+. ..++||+.|.++++||+.+|+.+..++ -..+|..+.|+++|++++.+.
T Consensus 51 HtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k----------------~~~~Vk~~~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 51 HTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK----------------TNSPVKRVDFSFGGNLILASTD 113 (327)
T ss_pred CCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee----------------cCCeeEEEeeccCCcEEEEEeh
Confidence 35789999999974 899999999999999999998543322 245788999999999766643
Q ss_pred -----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246 81 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 155 (285)
Q Consensus 81 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 155 (285)
.+.|.++|++.... ......+...+..+... ++.+- |+|-+++|++|.+||.|..||+++|+.
T Consensus 114 ~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~-Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 114 KQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSAL-WGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred hhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeee-ecccCCEEEEecCCCcEEEEEcccCce
Confidence 35699999985410 11112445666666655 78777 599999999999999999999999854
Q ss_pred -EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeE-----
Q 023246 156 -VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM----- 229 (285)
Q Consensus 156 -~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i----- 229 (285)
+.....|...|+.+.++|+..+++|++.|.+-++||.++-.++.......++.+....+..+ .++.++.....
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d-~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD-HVILGGGQEAMDVTTT 260 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc-eEEecCCceeeeeeee
Confidence 56667899999999999999999999999999999998776533222333333333222222 33333222111
Q ss_pred ---------EEEEeccc----------ccceeEeeeccccccCCCCCcCeEEEeecCC
Q 023246 230 ---------HVLRLQRR----------QTLAYRERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 230 ---------~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
+.+++--. ..+..+.+.|++....++.++|.|-+.-|+.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11111100 1234456777888888888887776665543
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.2e-22 Score=166.05 Aligned_cols=221 Identities=17% Similarity=0.261 Sum_probs=176.6
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEE
Q 023246 9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 87 (285)
Q Consensus 9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iw 87 (285)
++|-+-....+++|+.|..+.+|...... +...+.+|...|.++....++. +++|+ |.++++|
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW 127 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVW 127 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCC---------------chhhhhccccceeeeecCCcCc-eEecccccceEEe
Confidence 66665223579999999999999998764 3333489999999999888877 67765 9999999
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccce
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 167 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 167 (285)
... ++...+.+|+.. |.++.+ -|++ .++||+.|.+|++|.- ++.+.++.+|...|.
T Consensus 128 ~~~------------------~l~~~l~gH~as--VWAv~~-l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR 183 (745)
T KOG0301|consen 128 RIG------------------ELVYSLQGHTAS--VWAVAS-LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR 183 (745)
T ss_pred cch------------------hhhcccCCcchh--eeeeee-cCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee
Confidence 986 456678999977 999987 4555 8899999999999986 788999999999999
Q ss_pred EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeec
Q 023246 168 QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY 247 (285)
Q Consensus 168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (285)
.+++-|++ .|++|+.||.|++|++.+..+.++.+|..-++++. ....++.+++.++|+++++|+... ..+.+....
T Consensus 184 gL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e--~~q~I~lPt 259 (745)
T KOG0301|consen 184 GLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIWKKDE--CVQVITLPT 259 (745)
T ss_pred eeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEeecCc--eEEEEecCc
Confidence 99999864 58899999999999998888999999999998886 355677999999999999998763 333332221
Q ss_pred ---------cccccCCCCCcCeEEEeecCCCCCCC
Q 023246 248 ---------NAADFESDEEEGETYLLGFSDSDASS 273 (285)
Q Consensus 248 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (285)
...++..+..+|+|+++..+.....+
T Consensus 260 tsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As 294 (745)
T KOG0301|consen 260 TSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKAS 294 (745)
T ss_pred cceEEEEEeeCCCEEEeccCceEEEEEecccccCC
Confidence 23456666778899998776544433
No 106
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-22 Score=161.95 Aligned_cols=231 Identities=11% Similarity=0.149 Sum_probs=173.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 83 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~ 83 (285)
.+|.++||+.+. +.||.+-.||.|.||++..+-. +...+..+-...|.+++|++.++++.++.+|.
T Consensus 26 s~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~-------------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 26 SEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWF-------------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGS 91 (691)
T ss_pred cceEEEEEeccC-CceeeeccCCcEEEEccCCCce-------------eeEEEecCCCCceeeEEEccCCeEEeecCCce
Confidence 478999999975 8999999999999999986531 33333334467899999998777877788999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE--EEec
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMVG 161 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~ 161 (285)
|.-||+.+. +....+...... |.+++. +|.+..++.|++||.++.++...++..+ .+..
T Consensus 92 i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 92 ITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred EEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence 999999987 566666666655 999997 9999999999999988888888777653 3444
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CC----CCCCCcccceeeccc--cCCCceEEEeCCCCeEEEEEe
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP----PLPDNAEKIMKANKQ--GREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~----~~~~~~~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~ 234 (285)
..+.|.+++|+|++..+++|+.||.|++||...+. +. ++......-..+.|. ...+..+++|.+-|+|.+||.
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS 232 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence 56899999999999999999999999999987654 22 122222211222221 124557899999999999999
Q ss_pred cccccceeE-eeeccccccCCCCCcCeEEEeecC
Q 023246 235 QRRQTLAYR-ERRYNAADFESDEEEGETYLLGFS 267 (285)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 267 (285)
..+.+++.+ .+..+...++..+.+.+++..|.+
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence 988776655 444455556666655556555443
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=145.89 Aligned_cols=214 Identities=14% Similarity=0.233 Sum_probs=154.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~- 79 (285)
+++.|++++|+.+| ..|||++.|++|+||+++.-.... .. +++..+. -+..+.+.|+||.+-++. .
T Consensus 85 H~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e--------Hr-~~R~nve--~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE--------HR-CIRQNVE--YDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred cCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh--------hh-Hhhcccc--CCCceEEEECCCcceEEEEEc
Confidence 46789999999986 999999999999999998643110 00 1111111 125678999999985444 3
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
+..++++|-+..... ...++... .+.....-+.|... +..+-. ..++.++++++.|..|.+|+++ |+.+..+
T Consensus 153 ~g~~l~vyk~~K~~d-G~~~~~~v---~~D~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD-GSGSHHFV---HIDNLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred cCCEEEEEEeeeccc-CCCCcccc---cccccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 588899998865421 11111000 00111122234433 556665 6788999999999999999999 9999999
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcC---CCC------CCCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 230 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~ 230 (285)
...+..-+..+.+|+|+++++++..--|++|.+ +.+ ++.++.+|...+..... +++++.+++.|.||+++
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-sn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-SNSSTRAVTVSKDGKWR 303 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-CCCcceeEEEecCCcEE
Confidence 877778888999999999999999999999996 222 24568889988876654 56777899999999999
Q ss_pred EEEecc
Q 023246 231 VLRLQR 236 (285)
Q Consensus 231 vwd~~~ 236 (285)
+||..-
T Consensus 304 iwdtdV 309 (420)
T KOG2096|consen 304 IWDTDV 309 (420)
T ss_pred Eeeccc
Confidence 999763
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.6e-24 Score=174.47 Aligned_cols=160 Identities=21% Similarity=0.386 Sum_probs=144.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
+..+|.++.|++.. .+|++|+.+|+|++||+...+ .+.++ .+|...+..+.|+|-+.++++++
T Consensus 69 hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~gSt 132 (825)
T KOG0267|consen 69 HESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASGST 132 (825)
T ss_pred cCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccccc
Confidence 35689999999974 899999999999999999876 33333 89999999999999999999975
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|..+++||.+.. .+.+.+.+|... +..+.| +|+|++++.|++|..+++||+..|+.+..|.
T Consensus 133 dtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 133 DTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred cccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccccc
Confidence 999999999865 588999998865 889997 9999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
.|.+.+..+.|+|..-.+++|+.|+++++||+++-.
T Consensus 194 ~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 194 SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 999999999999999899999999999999998654
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-21 Score=144.74 Aligned_cols=198 Identities=13% Similarity=0.184 Sum_probs=148.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++..|++++.+|-+ +.+++++.|++|++||++..++ +..+ +...-..++|.|+|-++|.+.
T Consensus 99 H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--------------qg~l---~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--------------QGLL---NLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--------------ceEE---ecCCCcceeECCCCcEEEEecC
Confidence 46789999999975 9999999999999999997763 2222 122334679999999999976
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.+.|++||++.-.+ .+..+|.-. ......+.+.| +|+|++++.++..+.+++.|.-+|..+.++
T Consensus 161 ~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred CCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 44999999986520 233333322 22233899998 999999999999999999999999999988
Q ss_pred ecccccc---eEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 160 VGDRHVV---NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 160 ~~h~~~v---~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
..+...- -...|.|+++++++|+.||+|.+|+++++. +..+.+ +...+.+..+ ..++..-.+.+..+-+|=.
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f---nP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF---NPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc---CCceeeeeecCceEEEEec
Confidence 8765432 567899999999999999999999998876 455554 3444433332 2336666777888888854
Q ss_pred c
Q 023246 235 Q 235 (285)
Q Consensus 235 ~ 235 (285)
.
T Consensus 303 ~ 303 (311)
T KOG1446|consen 303 D 303 (311)
T ss_pred c
Confidence 4
No 110
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=148.24 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=146.7
Q ss_pred CCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 58 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
..|+.+|.+++.+|+.+++++| .|..-.+|++.++ ..+..+.+|+.. |.++.| +.++.+|
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g----------------e~~~eltgHKDS--Vt~~~F-shdgtlL 121 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG----------------EFAGELTGHKDS--VTCCSF-SHDGTLL 121 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------cceeEecCCCCc--eEEEEE-ccCceEE
Confidence 7899999999999988899996 5999999999998 688889999987 999998 9999999
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCCCCcccceeeccccC
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGR 215 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (285)
++|+.+|.|+||+..++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+..+ ..+.+.+|..+..+-. ..+
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~-f~p 200 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE-FIP 200 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc-ccC
Confidence 99999999999999999988888655677888999999999999999999999999774 4577778777764443 345
Q ss_pred CCceEEEeCCCCeEEEEEecccccceeEe
Q 023246 216 EDHSRITLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
+++.++++..||+|++|+..+++.+.++.
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEec
Confidence 67899999999999999999998887764
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.4e-22 Score=154.03 Aligned_cols=201 Identities=14% Similarity=0.215 Sum_probs=150.9
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEec-CCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~ 83 (285)
|.+++|+..-.++||+|+.|.+|++||+.+++ +...+ ..|.+.|.++.|+|.. .+|++|+ |++
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cceeh-hhcCCceeEEEecCCCceEEEeccccce
Confidence 45778887666899999999999999999997 33333 6899999999999976 5778876 999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCC-CceEEEEec
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG-GKLVRLMVG 161 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~ 161 (285)
|.+.|.+... ..-..++ .... |-.++| .+. ...++++.+||+|+-+|++. ++++.++++
T Consensus 311 V~l~D~R~~~---------------~s~~~wk-~~g~--VEkv~w-~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A 371 (463)
T KOG0270|consen 311 VALKDCRDPS---------------NSGKEWK-FDGE--VEKVAW-DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA 371 (463)
T ss_pred EEeeeccCcc---------------ccCceEE-eccc--eEEEEe-cCCCceeEEEecCCceEEeeecCCCCCceeEEEe
Confidence 9999998531 1222222 2223 788886 654 45678889999999999886 489999999
Q ss_pred ccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcc---cceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 162 DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAE---KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
|.++|.++++++.-+. ++|++.|+.|++|++..........|.. ...+..........++.|+..+.++|||+...
T Consensus 372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999999987665 8999999999999986544332222222 22333333334557788888889999998876
Q ss_pred ccc
Q 023246 238 QTL 240 (285)
Q Consensus 238 ~~~ 240 (285)
...
T Consensus 452 ~~V 454 (463)
T KOG0270|consen 452 SPV 454 (463)
T ss_pred hhH
Confidence 443
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=7.2e-22 Score=156.58 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=151.8
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~ 82 (285)
.-|.++++.|.| ..|++|+.|-+|++||+...... .+ ..+.+...-...|++++|++.|..|++ +...
T Consensus 168 k~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas--------~~--~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 168 KIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDAS--------MR--SFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eEEEEeeecCCC-ceeeeccccceEEEEeccccccc--------ch--hhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 358899999975 89999999999999999854321 11 122233444567999999999986555 6688
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGK-LVRLMV 160 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 160 (285)
..+|+|-....-. ....-...+ .-+..-++|... +++.+| +| +.+.+++++.||++++||+...+ .+..++
T Consensus 237 qakl~DRdG~~~~-e~~KGDQYI---~Dm~nTKGHia~--lt~g~w-hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 237 QAKLLDRDGFEIV-EFSKGDQYI---RDMYNTKGHIAE--LTCGCW-HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred ceeEEccCCceee-eeeccchhh---hhhhccCCceee--eecccc-ccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 8999997654100 000000000 111223567755 899996 66 55688999999999999987544 344443
Q ss_pred -----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC----CCCCcc--cceeeccccCCCceEEEeCCCCeE
Q 023246 161 -----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAE--KIMKANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 161 -----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~i 229 (285)
+-.-+++.++|+|+++.+|+|+.||.|.+|+.....+.. -..|.. .+.++ ..+.++.+|++-+.|+++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi-~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI-SFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE-EeccccchhhhccCCCce
Confidence 234578999999999999999999999999985543211 122433 44444 346678899999999999
Q ss_pred EEEEecccccce
Q 023246 230 HVLRLQRRQTLA 241 (285)
Q Consensus 230 ~vwd~~~~~~~~ 241 (285)
++||++..+...
T Consensus 389 KvWDLrq~kkpL 400 (641)
T KOG0772|consen 389 KVWDLRQFKKPL 400 (641)
T ss_pred eeeeccccccch
Confidence 999999876543
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.8e-21 Score=140.69 Aligned_cols=204 Identities=15% Similarity=0.214 Sum_probs=152.9
Q ss_pred CccceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246 2 NSIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 78 (285)
Q Consensus 2 ~~~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s 78 (285)
+++||+.++| +|.-+.+||++++||.|.||.-..++. ........|...|++++|.|.+. +|++
T Consensus 55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------~k~~e~~~h~~SVNsV~wapheygl~Lac 121 (299)
T KOG1332|consen 55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------TKAYEHAAHSASVNSVAWAPHEYGLLLAC 121 (299)
T ss_pred CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------hhhhhhhhhcccceeecccccccceEEEE
Confidence 4689999999 555459999999999999999988764 22233368999999999999764 6777
Q ss_pred e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---C-----------cEEEEecCCC
Q 023246 79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---D-----------EYVMSGSDCG 143 (285)
Q Consensus 79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-----------~~l~~~~~dg 143 (285)
+ +||.|.|.+..... .+...+....|.-. ++++++ .|. | +.|++|+.|.
T Consensus 122 asSDG~vsvl~~~~~g-------------~w~t~ki~~aH~~G--vnsVsw-apa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSG-------------GWTTSKIVFAHEIG--VNSVSW-APASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred eeCCCcEEEEEEcCCC-------------Cccchhhhhccccc--cceeee-cCcCCCccccccCcccccceeeccCCcc
Confidence 4 69999999987641 11233455677765 999995 765 4 5699999999
Q ss_pred eEEEEecCCCc--eEEEEecccccceEeEEcCCC----CeEEEEecCCcEEEEcCCCC----CCCCCCCCcccceeeccc
Q 023246 144 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKANKQ 213 (285)
Q Consensus 144 ~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~ 213 (285)
.|+||+..+++ ...+|.+|.+.|..++|.|.- .++++|+.||++.||..+.. +...+......+..+.|
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW- 264 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW- 264 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE-
Confidence 99999988764 345688999999999999964 35999999999999987632 11223233344555554
Q ss_pred cCCCceEEEeCCCCeEEEEEec
Q 023246 214 GREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 214 ~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
+..+..|.....|..+.+|.-.
T Consensus 265 S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eccccEEEEecCCcEEEEEEeC
Confidence 4455577777889999999643
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.1e-21 Score=160.40 Aligned_cols=189 Identities=16% Similarity=0.264 Sum_probs=146.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
+..|.|++...++ .+++|+.|.++++|...... .. ..+|+.+|+++++-|++.++..+.|+
T Consensus 101 ~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------~~-l~gH~asVWAv~~l~e~~~vTgsaDK 161 (745)
T KOG0301|consen 101 KSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------YS-LQGHTASVWAVASLPENTYVTGSADK 161 (745)
T ss_pred ccceeeeecCCcC--ceEecccccceEEecchhhh----------------cc-cCCcchheeeeeecCCCcEEeccCcc
Confidence 3456666655543 49999999999999876322 12 38999999999999998666556799
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
+|++|.-. +.+++|.+|.+- |+++++. ++..|++++.||.|++|++ +|+++..+.+|
T Consensus 162 tIklWk~~------------------~~l~tf~gHtD~--VRgL~vl--~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 162 TIKLWKGG------------------TLLKTFSGHTDC--VRGLAVL--DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeeeccCC------------------chhhhhccchhh--eeeeEEe--cCCCeEeecCCceEEEEec-cCceeeeeecc
Confidence 99999874 588999999977 9999973 4557889999999999999 69999999999
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
+..|+++...+++..++++++|++++||+.. .+.+.+.-....+-.. . ...+.-+++|++||.|+||....
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa-~-~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSA-K-VLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEE-E-EeeCCCEEEeccCceEEEEEecc
Confidence 9999999988888899999999999999976 2222222111122111 1 12334688999999999998764
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=140.74 Aligned_cols=221 Identities=11% Similarity=0.140 Sum_probs=151.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..-+|+.|++-| .+||+|+.||.|.|||+.+.. +...+.+|..+|++++||++|++|++++ |.
T Consensus 24 ~~a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 24 PLAECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred CccceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCc
Confidence 346789999964 999999999999999999874 3344489999999999999999988865 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCcc-------------------ccCCCCceEee-------cccCcee----eeeEEEecCC
Q 023246 83 LVYLFEKNMGLGPSPLSLSPED-------------------LQKREEPQVYS-------GHRNSQT----VKGVNFFGPN 132 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-------~~~~~~~----i~~~~~~~~~ 132 (285)
.|.+||+..+. ....+.... +.....+..+. ....... -.+..| ++.
T Consensus 88 si~lwDl~~gs--~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~ 164 (405)
T KOG1273|consen 88 SIKLWDLLKGS--PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRR 164 (405)
T ss_pred eeEEEeccCCC--ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCC
Confidence 99999998774 111111100 00000111111 0000000 111224 788
Q ss_pred CcEEEEecCCCeEEEEecCCCceEEEEeccc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-------CCCCCCCCc
Q 023246 133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNA 204 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~ 204 (285)
|+++++|...|.+.++|..+.++++.++-.. ..|..+.++..|+.|+.-+.|..||.|+++.- .+.......
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 9999999999999999999999999888655 78999999999999999999999999997521 111110011
Q ss_pred ccceeecc----ccCCCceEEEeCCC-CeEEEEEecccccceeE
Q 023246 205 EKIMKANK----QGREDHSRITLTPD-VIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 205 ~~~~~~~~----~~~~~~~~~~~s~d-~~i~vwd~~~~~~~~~~ 243 (285)
.-+....| .+.++.++++++.. ..++||.-..+.++..+
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 11222211 23355677766643 78999997777665544
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.6e-20 Score=140.10 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=124.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 81 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d 81 (285)
+...|.++.|+|.+ ..|++++.||++++|++...++... ..|..++.+++|.++.+.+..+.|
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~----------------~~~~~plL~c~F~d~~~~~~G~~d 74 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLK----------------FKHGAPLLDCAFADESTIVTGGLD 74 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhh----------------eecCCceeeeeccCCceEEEeccC
Confidence 45679999999975 6777778999999999987643211 468889999999997666666779
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
|.|+.+|+.++ ....+..|..+ +.++.+ .+....+++|+.|++|++||.+.......+..
T Consensus 75 g~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 75 GQVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred ceEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEecccccccccccc
Confidence 99999999987 44556667766 999998 88888999999999999999997666655553
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
...|.++.. .++.|+.|+.|..+.+||++..
T Consensus 135 -~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 -GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -CceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 347888766 4678999999999999998753
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=4.2e-21 Score=150.09 Aligned_cols=203 Identities=14% Similarity=0.184 Sum_probs=151.7
Q ss_pred cceeEEEEcCCCC-cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEec
Q 023246 4 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYN 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~ 80 (285)
.+|++++|+|... .++|+|..-|+|-+||+.+.+.. . .-..+...|..+|.++.|+|... ++.++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----~------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----K------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----c------CceEEeccCCccccceEecCCChhheeeecc
Confidence 6899999999765 68999999999999999743311 1 11222378999999999999763 455567
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLM 159 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~ 159 (285)
||+|++-|++.. ..-..+........+..+.| +.+...++.+..=|...+||++++.. ...+
T Consensus 256 DGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 256 DGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred Cceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccchhh
Confidence 999999999876 22222333233344777887 77777888888888999999998665 6667
Q ss_pred ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.-|...|..|+++|...+ |+|++.|++++|||++.-.. .....|...+ ..+..++.+..+++-+.|..|+|||
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEEee
Confidence 778899999999998877 99999999999999875321 2223344444 4444566566699999999999999
Q ss_pred ec
Q 023246 234 LQ 235 (285)
Q Consensus 234 ~~ 235 (285)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 83
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=8.2e-21 Score=141.25 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=140.4
Q ss_pred CCCCcceEEEEEecCCC-EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246 58 GKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (285)
..-.+.|.+|+|||... ++++++ |++|++|+++.... ...+....|..+ +.+++| +.+|..
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------~~~ka~~~~~~P--vL~v~W-sddgsk 86 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------LVPKAQQSHDGP--VLDVCW-SDDGSK 86 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCc--------------ccchhhhccCCC--eEEEEE-ccCCce
Confidence 34467899999999554 555565 99999999986310 122344456655 999996 999999
Q ss_pred EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCC--eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccc
Q 023246 136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP--MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ 213 (285)
Q Consensus 136 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 213 (285)
+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+... .|+||+.|++|++||++...........++++.....
T Consensus 87 Vf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL 165 (347)
T ss_pred EEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc
Confidence 999999999999999988 5556777999999999987666 5999999999999999987653333345555555433
Q ss_pred cCCCceEEEeCCCCeEEEEEecccccceeE------------eeeccccccCCCCCcCeEEEeecCCC
Q 023246 214 GREDHSRITLTPDVIMHVLRLQRRQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.+ +++.+..++.|.++++++.....+. .--.+....+.+.-||++.+...+++
T Consensus 166 ~p---m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 166 YP---MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred Cc---eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 33 7888999999999999765332221 22233444566677788887777665
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.3e-21 Score=148.56 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=156.2
Q ss_pred CcEEEEeeCCCcEEEEEccCCccc-CCcCCCC-----CcccccccccCCCCCcceEEEEEecCCC-EEEEec-CCcEEEE
Q 023246 16 PNYFAVGGSDEYARVYDIRKCHWY-SPISSDT-----PVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLF 87 (285)
Q Consensus 16 ~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d~~i~iw 87 (285)
++++|.|+.|..|.|||+.-...+ ..+.... ....-.......+|+..|..++|+..-+ .||+|+ |.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 479999999999999998643211 1111110 0000011222357999999999998765 788875 9999999
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-EEEecccccc
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMVGDRHVV 166 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~~~~~h~~~v 166 (285)
|+.++ ++..++..|..+ |.++.|++....++++|+.|++|.+.|.+..... ..++ -.+.|
T Consensus 272 D~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V 332 (463)
T KOG0270|consen 272 DVDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV 332 (463)
T ss_pred EcCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce
Confidence 99999 788888878766 9999986667899999999999999999853332 2222 35789
Q ss_pred eEeEEcCCCCe-EEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 167 NQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 167 ~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
-.++|.|.... ++++..||+++-+|+|.. .+.++..|..++-.+........++++++.|+.+++|++...+.
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 99999998776 777789999999999865 35778889998877766666677899999999999999986544
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=4.9e-21 Score=157.54 Aligned_cols=217 Identities=18% Similarity=0.262 Sum_probs=165.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---CEEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS 78 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~s 78 (285)
+|..+.+++++|++ ..||+|..-|.++||++...+. ...+..|...|.|+.|+... ++||+
T Consensus 458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhh
Confidence 46789999999985 8999999999999999987652 22237899999999999643 58888
Q ss_pred ec-CCcEEEEEcCCCCCCCC---------CCCCC--cc------------------ccCCCCceEeecccC---ceeeee
Q 023246 79 YN-DELVYLFEKNMGLGPSP---------LSLSP--ED------------------LQKREEPQVYSGHRN---SQTVKG 125 (285)
Q Consensus 79 ~~-d~~i~iwd~~~~~~~~~---------~~~~~--~~------------------~~~~~~~~~~~~~~~---~~~i~~ 125 (285)
++ |..|+|||+.....+.. .+++. .. .++......|..|.. ...++.
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 65 99999999976651110 00000 00 000001112222221 123888
Q ss_pred EEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec---ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCC
Q 023246 126 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 201 (285)
Q Consensus 126 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 201 (285)
++. .|+.+++++++.|..|+|||+++++....|++ |.+..-.+...|.|.|+++.+.|+++.++|..+++ +.++.
T Consensus 602 m~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 887 99999999999999999999999999999974 66778888999999999999999999999997766 57788
Q ss_pred CCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
+|...+.... ..++-+.+++.+.||.|.||.+..
T Consensus 681 GHsE~VTG~k-F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAVTGVK-FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred Ccchheeeee-ecccchhheeecCCceEEEEECch
Confidence 8887765543 356777899999999999999864
No 121
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=138.24 Aligned_cols=212 Identities=17% Similarity=0.200 Sum_probs=157.8
Q ss_pred ccceeEEEEcCCCCcEEEEeeCC-------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 75 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 75 (285)
-++|+.++-+|.++.+|+|+..+ -.+.||.+......... .++. ++..+-..+-+.|.|+.|.|++..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCCCe
Confidence 36789999999888889888653 23678998754311000 0011 334443456679999999999999
Q ss_pred EEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-----cccCceeeeeEEEecC--CCcEEEEecCCCeEEEE
Q 023246 76 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIW 148 (285)
Q Consensus 76 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vw 148 (285)
+++-.|..|.+|++.... +....+. .++.. .++-+| +| +++.+++.+ |+++..|
T Consensus 138 lasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred eEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEeC-CCcEEEE
Confidence 999889999999998762 1112211 12222 566664 76 667776655 8999999
Q ss_pred ecCCCceEEEEe-cccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeC
Q 023246 149 KKKGGKLVRLMV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT 224 (285)
Q Consensus 149 d~~~~~~~~~~~-~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s 224 (285)
|+++-++...+. +|...|..+.|+|+.++ |++|+.||.|+|||.+..+ +.++.+|...+-++-+....+.++++++
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 999887776664 78899999999998776 9999999999999998765 6789999999887766666788999999
Q ss_pred CCCeEEEEEecccc
Q 023246 225 PDVIMHVLRLQRRQ 238 (285)
Q Consensus 225 ~d~~i~vwd~~~~~ 238 (285)
.|..|.+|...+-.
T Consensus 279 SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 279 SDSAVNLSCASSVS 292 (370)
T ss_pred CCceeEEEeccccc
Confidence 99999999876543
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-19 Score=129.54 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=155.7
Q ss_pred CCccceeEEEEcC---CCCcEEEEee-CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246 1 MNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 76 (285)
Q Consensus 1 ~~~~~v~~~~~s~---~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 76 (285)
|+.+.|..++|-. .++.+|++++ .|..|.+-|..+++ . .+.+.+|++.|.++ ++-++-++
T Consensus 134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--------------~-~~a~sghtghilal-yswn~~m~ 197 (350)
T KOG0641|consen 134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--------------G-FHALSGHTGHILAL-YSWNGAMF 197 (350)
T ss_pred ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--------------c-ceeecCCcccEEEE-EEecCcEE
Confidence 6778899999943 2446777765 46667777777775 2 22338999999887 44567799
Q ss_pred EEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec--ccC---ceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246 77 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRN---SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 150 (285)
Q Consensus 77 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 150 (285)
++|+ |.+|+.||++-. .++.++.. |.. ...|.+++. +|.|+++++|-.|....+||+
T Consensus 198 ~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 198 ASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred EccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEEe
Confidence 9976 999999999876 35444432 111 133888997 999999999999999999999
Q ss_pred CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC-----CCCcccceeeccccCCCceEEEeCC
Q 023246 151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-----PDNAEKIMKANKQGREDHSRITLTP 225 (285)
Q Consensus 151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~ 225 (285)
+.+..+..+..|...|.++.|+|.-.++++|+.|..|++-|+.+....++ ..|...++...| .+.+-.+++.+.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw-h~~d~sfisssa 339 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW-HPQDFSFISSSA 339 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe-cCccceeeeccC
Confidence 99999999999999999999999999999999999999999977643333 346666666655 334456788999
Q ss_pred CCeEEEEEec
Q 023246 226 DVIMHVLRLQ 235 (285)
Q Consensus 226 d~~i~vwd~~ 235 (285)
|.++.+|.+.
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999753
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=3.9e-21 Score=152.20 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=154.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~ 82 (285)
.-|.++...|++ +.|++|+.-.++.|||+..... .++.-+....-..++++.+||.++.++ ++||
T Consensus 466 nyiRSckL~pdg-rtLivGGeastlsiWDLAapTp-------------rikaeltssapaCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 466 NYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP-------------RIKAELTSSAPACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred cceeeeEecCCC-ceEEeccccceeeeeeccCCCc-------------chhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence 457788999986 8999999999999999986642 112222333446788999999997666 6799
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-----
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----- 157 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~----- 157 (285)
.|.|||+... ..++.|++|.+. +.++.+ +++|..|-+|+-|.+|+.||++++..+.
T Consensus 532 nI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-s~dGtklWTGGlDntvRcWDlregrqlqqhdF~ 592 (705)
T KOG0639|consen 532 NIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS 592 (705)
T ss_pred cEEEEEcccc----------------eeeecccCCCCC--ceeEEe-cCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence 9999999987 789999999988 999997 9999999999999999999998764321
Q ss_pred -----------------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCC
Q 023246 158 -----------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLP 201 (285)
Q Consensus 158 -----------------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~ 201 (285)
.+..|.+.|.++.|.+.|+++++.+.|..+..|..-.+ .+.+.+
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 33456788999999999999999999999999987544 344444
Q ss_pred CCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
. ...+.+.. .+.+++++|+||.|..-.||.+
T Consensus 673 E-~SsVlsCD-IS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 E-SSSVLSCD-ISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-cCcceeee-eccCceEEEecCCCcceEEEEE
Confidence 2 23333322 3567889999999988887764
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=2.3e-20 Score=147.84 Aligned_cols=226 Identities=14% Similarity=0.147 Sum_probs=162.4
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV 84 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i 84 (285)
|.++.+|... +.++||+. |-|+|||+..... ..|+..+.. .....-|+++...|+|+.|++| .-.++
T Consensus 422 VcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------k~PvsqLdc----l~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 422 VCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------KSPVSQLDC----LNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred EEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------CCccccccc----cCcccceeeeEecCCCceEEecccccee
Confidence 4457777754 78888885 8899999975421 112221110 1234578999999999977775 58899
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 164 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 164 (285)
.|||+.... ......+.... ...++++. +|+.+..+++..||.|.|||+.+...++.|++|..
T Consensus 490 siWDLAapT--------------prikaeltssa--paCyALa~-spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 490 SIWDLAAPT--------------PRIKAELTSSA--PACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred eeeeccCCC--------------cchhhhcCCcc--hhhhhhhc-CCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 999998761 11222222222 22778887 99999999999999999999999999999999999
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc----
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL---- 240 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~---- 240 (285)
.+.|+.++++|..|-||+.|.+||.||++.++...-......++.+..+ +.+..++.|-.++.+.|......+..
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~kyqlhl 631 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPEKYQLHL 631 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC-CCccceeeecccCcEEEEecCCccceeecc
Confidence 9999999999999999999999999999987643333345566666553 34557778888888888876654332
Q ss_pred -----eeEeeeccccccCCCCCcCeE
Q 023246 241 -----AYRERRYNAADFESDEEEGET 261 (285)
Q Consensus 241 -----~~~~~~~~~~~~~~~~~~~~v 261 (285)
..+.+.+.+..+++..-++.+
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhh
Confidence 233566667766665444333
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.7e-20 Score=137.20 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=144.1
Q ss_pred EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCC
Q 023246 18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPS 96 (285)
Q Consensus 18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~ 96 (285)
.|++|++...|.-+++..... ..-... --.+.+......|.+++++++.+ +.++|+| +|.+|+|||+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-~~~~s~--~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~---- 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-GCTDSV--KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR---- 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-cccccc--ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch----
Confidence 577888888877777653220 000000 01112333447899999999984 6799996 5999999999887
Q ss_pred CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 174 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 174 (285)
..+..+..|.+. |+++.| .+... .|++|++||.|.+|+....+++.++++|.+.|+.++++|.
T Consensus 74 ------------~qlg~ll~Hags--itaL~F-~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 74 ------------KQLGILLSHAGS--ITALKF-YPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred ------------hhhcceeccccc--eEEEEe-cCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 677888888876 999998 55543 8999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCcEEEEcCCCCCC---CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246 175 IPMFATCGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR 246 (285)
Q Consensus 175 ~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~ 246 (285)
++.-++.+.|+.+++|++-.++. ..+. +.... +.| .+.+.+++.+. ...|-+|.+........++.+
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~--v~w-~~~Gd~F~v~~-~~~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL--VSW-SPQGDHFVVSG-RNKIDIYQLDNASVFREIENP 208 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeeccC-Cccee--eEE-cCCCCEEEEEe-ccEEEEEecccHhHhhhhhcc
Confidence 99999999999999999966553 3332 22222 333 34444444444 345778887776555444433
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.9e-21 Score=142.10 Aligned_cols=213 Identities=12% Similarity=0.185 Sum_probs=157.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC----Ccc------------cCCcC----------CCCCccccccccc
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK----CHW------------YSPIS----------SDTPVDTFCPRHL 56 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~----~~~------------~~~~~----------~~~~~~~~~~~~~ 56 (285)
-+.|+++.|++.+ .++++++.|++..||...- .+. ....+ .+.+..- .+..-
T Consensus 190 ~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~ 267 (481)
T KOG0300|consen 190 TGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMR 267 (481)
T ss_pred ccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeee
Confidence 4689999999975 8999999999999998321 110 00000 0000000 12223
Q ss_pred CCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246 57 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 57 ~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (285)
+.+|...|.+..|-..|+.+++++ |.+..+||++++ ..+..+.+|... .+.++- .|..++
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------e~v~~LtGHd~E--LtHcst-HptQrL 328 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----------------EVVNILTGHDSE--LTHCST-HPTQRL 328 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------ceeccccCcchh--cccccc-CCcceE
Confidence 368999999999999999888876 999999999999 799999999977 888885 899999
Q ss_pred EEEecCCCeEEEEecCCC-ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeecc
Q 023246 136 VMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANK 212 (285)
Q Consensus 136 l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~ 212 (285)
+++.+.|.+.++||.+.. +.+..|++|...|+++.|..+ ..+++++.|.+|++||+++.. +.++. ...++..++.
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvav 406 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAV 406 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEe
Confidence 999999999999998743 457889999999999999876 458899999999999998765 33332 2222222221
Q ss_pred ccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 213 QGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 213 ~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+.....++.--.+.+|++||+...+.
T Consensus 407 -s~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 407 -SKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred -ecCCceEEeccCCceEEEEecCCCcc
Confidence 22233455555668999999886544
No 127
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.6e-21 Score=166.29 Aligned_cols=214 Identities=15% Similarity=0.164 Sum_probs=162.7
Q ss_pred ceeEEEEcCCCCc---EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246 5 RLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY- 79 (285)
Q Consensus 5 ~v~~~~~s~~~~~---~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~- 79 (285)
+-+.++|.+.+.. +||.|..||.|.+||...-.. +. ..........|++.|..+.|++... +||+|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~---~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NA---SEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhcc------Cc---chHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 4567899886544 599999999999999875200 00 0011122278999999999999765 89996
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
+||.|.|||+.... ....+........|.+++|.-.....|++++.+|.+.|||++..+.+-.+
T Consensus 137 ~~geI~iWDlnn~~----------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPE----------------TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred CCCcEEEeccCCcC----------------CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence 59999999998762 22222111122339999963345667889999999999999988887777
Q ss_pred eccc--ccceEeEEcCCCCe-EEEEecCC---cEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 160 VGDR--HVVNQLEPHPHIPM-FATCGIEK---TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 160 ~~h~--~~v~~~~~~p~~~~-l~t~~~d~---~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
..|. ..+..++|+|+... +++++.|. .|.+||+|... ++.+.+|...++.+.|+..+.+++++...|+.+.+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE
Confidence 6554 35788999998765 77777654 79999997654 57778899999999999999999999999999999
Q ss_pred EEecccccceeE
Q 023246 232 LRLQRRQTLAYR 243 (285)
Q Consensus 232 wd~~~~~~~~~~ 243 (285)
|+..+++.+..+
T Consensus 281 wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 281 WNPNTGEVLGEL 292 (1049)
T ss_pred ecCCCceEeeec
Confidence 999998776554
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.2e-19 Score=149.68 Aligned_cols=230 Identities=13% Similarity=0.176 Sum_probs=181.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d 81 (285)
..+.+.++|.|+| +.|++++.||.|++|+...... .+..+ ..+...|.+++-... +|++ +.+
T Consensus 13 t~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~--~f~~~s~~ 75 (933)
T KOG1274|consen 13 TGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN--HFLTGSEQ 75 (933)
T ss_pred cCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc--ceEEeecc
Confidence 4567889999986 7999999999999999876521 23333 336777777776544 5555 569
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
++|.+|.+..+ ..-..+...+-+ +..++| +.+|++++.|++|-.|++.++.+......+.+
T Consensus 76 ~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 76 NTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred ceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 99999999877 333334444444 889998 89999999999999999999999999999999
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-------CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------NAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
|.++|.++.|+|.+++||+.+-||.|++|++..+.+ .++.+ ....++....|.+.++.++..+.|+.|++++
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 999999999999999999999999999999987754 22221 1144555555677778888899999999998
Q ss_pred eccccc------------ceeEeeeccccccCCCCCcCeEEEeecCC
Q 023246 234 LQRRQT------------LAYRERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 234 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
...... ...+.++|++.+++...-+|.|.+++.+.
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 765532 33447899999999999999999998875
No 129
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4e-20 Score=142.29 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=155.2
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-e
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~ 79 (285)
++++|..++|+|.+.+.+|+|+.|.+|.||.+..+.+..... .+...+.+|...|--++|+|... .|++ |
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeecccchhhHhhcc
Confidence 467899999999988999999999999999998765432211 22233389999999999999774 5565 6
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.|.+|.+|++.++ +.+.++. |.+. |.++.| +.+|.++++.+.|..|+|||.++++.+..-
T Consensus 152 ~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred CCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 7999999999998 5555565 7766 999997 999999999999999999999999999988
Q ss_pred ecccc-cceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 160 VGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 160 ~~h~~-~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
.+|.+ .-..+.|-.++..+-||- .+..+-+||...-. +.++. ....++-..+-...+-..++|-.|+.|+.
T Consensus 212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 88874 344566777888444442 46789999986543 12232 22333222221222335678888999999
Q ss_pred EEecccc
Q 023246 232 LRLQRRQ 238 (285)
Q Consensus 232 wd~~~~~ 238 (285)
|.+....
T Consensus 291 yEit~d~ 297 (472)
T KOG0303|consen 291 FEITNEP 297 (472)
T ss_pred EEecCCC
Confidence 9988754
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-20 Score=145.00 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=135.4
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEE-ec
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YN 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s-~~ 80 (285)
..|+|+.|+-|+ .+|+||+.||.|.+|.+.+---....... .+...+..|+-+|+++...+.| .+|++ +.
T Consensus 124 Q~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~------~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 124 QSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSV------KPLHIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred cceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCc------cceeeeccCcceeEEEEecCCCccceEEEecC
Confidence 479999999986 89999999999999998643111011112 3344448999999999988765 36666 56
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-------
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------- 153 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------- 153 (285)
|.++++||+..+ ..+.++.-. ..+.+++. +|.++.++.|+.+|.|.+.++...
T Consensus 197 D~t~k~wdlS~g----------------~LLlti~fp---~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 197 DRTIKLWDLSLG----------------VLLLTITFP---SSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred CceEEEEEeccc----------------eeeEEEecC---CcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccc
Confidence 999999999988 566555432 33999997 999999999999999999886432
Q ss_pred ---------ceEEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccc
Q 023246 154 ---------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 207 (285)
Q Consensus 154 ---------~~~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 207 (285)
..+..+.+|.+ .|+|++++-||..|++|+.||.|++||+.+.. ++++....+++
T Consensus 257 ~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred cccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 23556778887 99999999999999999999999999997665 34443233444
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=3.2e-19 Score=132.62 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=127.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---CEEEEe
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISY 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~s~ 79 (285)
+-.|.++.|-|-+.-+|.+++.|.++++||..+.+....+ .-.+.|.+-++||-. .++|+|
T Consensus 101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F----------------~me~~VYshamSp~a~sHcLiA~g 164 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF----------------KMEGKVYSHAMSPMAMSHCLIAAG 164 (397)
T ss_pred eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe----------------ecCceeehhhcChhhhcceEEEEe
Confidence 4468889999965579999999999999999987632211 224467777777743 366777
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCC-ceE
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGG-KLV 156 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~-~~~ 156 (285)
. +-.|++.|+.++ ...+++.+|++. |.++.| +|...++ ++|+.||.|++||++.. .+.
T Consensus 165 tr~~~VrLCDi~SG----------------s~sH~LsGHr~~--vlaV~W-sp~~e~vLatgsaDg~irlWDiRrasgcf 225 (397)
T KOG4283|consen 165 TRDVQVRLCDIASG----------------SFSHTLSGHRDG--VLAVEW-SPSSEWVLATGSADGAIRLWDIRRASGCF 225 (397)
T ss_pred cCCCcEEEEeccCC----------------cceeeeccccCc--eEEEEe-ccCceeEEEecCCCceEEEEEeeccccee
Confidence 5 889999999999 789999999988 999995 8877764 78999999999998743 233
Q ss_pred EEE--------------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 157 RLM--------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 157 ~~~--------------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
..+ .+|.+.|+.++|..++.++++++.|..+++|+...+.
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 322 3577889999999999999999999999999986654
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=3.3e-19 Score=137.30 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=144.4
Q ss_pred cCCCCCcceEEEEEecCC-CEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246 56 LIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 133 (285)
Q Consensus 56 ~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 133 (285)
+..+|+++|..++|+|.. +.+|+|+ |.+|.||.+..+.-.. ...+.+..+.+|... |.-+.|+....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------~ltepvv~L~gH~rr--Vg~V~wHPtA~ 144 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------DLTEPVVELYGHQRR--VGLVQWHPTAP 144 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---------CcccceEEEeeccee--EEEEeecccch
Confidence 347999999999999966 5778865 9999999997652111 111467788899855 99999743456
Q ss_pred cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeecc
Q 023246 134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANK 212 (285)
Q Consensus 134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 212 (285)
+.|++++.|.+|.+|++.+|+.+-++. |...|.++.|+.+|.+|+|.+.|+.||+||++.+++. .-..|.+.-.....
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 788999999999999999999988888 9999999999999999999999999999999998853 33344433222222
Q ss_pred ccCCCceEEEe---CCCCeEEEEEecccccceeEee--eccccccCCC-CCcCeEEEeecCCC
Q 023246 213 QGREDHSRITL---TPDVIMHVLRLQRRQTLAYRER--RYNAADFESD-EEEGETYLLGFSDS 269 (285)
Q Consensus 213 ~~~~~~~~~~~---s~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~ 269 (285)
+..+...+.+| .++.++-+||-..-+.+..+.. ..++.-++.. ++.+-||+.|-.|+
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred EeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 22333344443 3468999998776555433311 1123334433 45567788886665
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.5e-19 Score=150.21 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=157.1
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.|.+++... ++|++|+.+++|.+|.+..++. ..++...+-++++++|+.+|+++|.|+ |-.
T Consensus 58 ~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~---------------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~ 119 (933)
T KOG1274|consen 58 LVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE---------------DTILARFTLPIRDLAVSGSGKMIAAGSDDTA 119 (933)
T ss_pred eeEEEeecc---cceEEeeccceEEEeeCCCCCc---------------cceeeeeeccceEEEEecCCcEEEeecCcee
Confidence 455555544 5999999999999999998752 222234466899999999999999965 889
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD- 162 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h- 162 (285)
|++-+.... .....+++|..+ |.++.| +|++++|++.+-||.|++||+.++.+..++.+-
T Consensus 120 vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 120 VKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred EEEEecccc----------------chheeecccCCc--eeeeeE-cCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 999999877 678899999987 999998 999999999999999999999998887766421
Q ss_pred -------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 163 -------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 163 -------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
...+..++|+|++..|+..+.|++|++|+..+... ..+.. +....+....+++.+.|++++.-+|.|.|||
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 34567799999988899999999999999988763 23322 2233355555677789999999999999999
Q ss_pred ecc
Q 023246 234 LQR 236 (285)
Q Consensus 234 ~~~ 236 (285)
.++
T Consensus 261 v~t 263 (933)
T KOG1274|consen 261 VDT 263 (933)
T ss_pred ccc
Confidence 994
No 134
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=129.50 Aligned_cols=236 Identities=12% Similarity=0.115 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcC-CCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 84 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i 84 (285)
|.+-+|+|-+ .+|++|..+|+|.+..+.+........ ...++.. ..+|.++++.++|. ..+|.++.||.|
T Consensus 13 vf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~------eqahdgpiy~~~f~--d~~Lls~gdG~V 83 (325)
T KOG0649|consen 13 VFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP------EQAHDGPIYYLAFH--DDFLLSGGDGLV 83 (325)
T ss_pred HHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceee------ccccCCCeeeeeee--hhheeeccCceE
Confidence 4556889964 899999999999999987532111110 1111111 27899999999998 458888889999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 164 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 164 (285)
+=|.-+....+ ......+.+.......... - ..|+++-. .|..+-++.++.|+.++.||+++|+..+++++|+.
T Consensus 84 ~gw~W~E~~es-~~~K~lwe~~~P~~~~~~e--v--PeINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 84 YGWEWNEEEES-LATKRLWEVKIPMQVDAVE--V--PEINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred EEeeehhhhhh-ccchhhhhhcCccccCccc--C--CccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 99887654211 1111111111111111111 1 12788875 88888888888999999999999999999999999
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccc-eeecc------ccCCCceEEEeCCCCeEEEEEecc
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKANK------QGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~------~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
.|.+++-......+++|++||++|+||.++++. ..+.....+- ....+ ...+...+++| ..-.+.+|.+++
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccC
Confidence 999999866667799999999999999998863 2222111111 00000 01123344443 346789999999
Q ss_pred cccceeEeeeccccccCCCCC
Q 023246 237 RQTLAYRERRYNAADFESDEE 257 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ 257 (285)
.+....+........+...++
T Consensus 237 se~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 237 SESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred CCceEEEecccceeEeeeecc
Confidence 887777765554444444433
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=139.09 Aligned_cols=203 Identities=10% Similarity=0.155 Sum_probs=152.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-c
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~ 80 (285)
.++|+++.|+|. ..+|++++.|++++||-+..... ..+.+. .--..+|.+.+|.|+|+ .++++ .
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N-------~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVN-------PKLQSI------HLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccC-------hhheee------eeccCccceeeecCCCceEEEeccc
Confidence 468999999996 58999999999999999974331 111111 22345899999999998 66664 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
...++.||+.+.. ...+....++.. ..+..... ++++++|+..+..|.|.+....+++.+.+++
T Consensus 279 rky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 279 RKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred ceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence 8899999998761 112233333332 23667776 8999999999999999999999999999888
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
- .+.|..++|+.+++.|+.++.+|.|.+||++...+ ..+.....---...+.+....++++||..|.|.|||..+
T Consensus 343 i-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 343 I-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred e-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 4 67899999999999999999999999999988764 444322222222222344666999999999999999654
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-20 Score=161.04 Aligned_cols=206 Identities=14% Similarity=0.200 Sum_probs=165.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccccccc-CCCCCcceEEEEEecCC-CEEEEe
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTS-ELLISY 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~-~~l~s~ 79 (285)
+.+.|.++.|++..+++||+|+.||.|.|||+...+ .+.+. ...-...|.+++|+..- +.|+++
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence 467899999999887899999999999999998654 11111 12345689999999866 477776
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCC---eEEEEecCCC-
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCG---HLFIWKKKGG- 153 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg---~v~vwd~~~~- 153 (285)
+ +|.+.|||++.. +.+..+..+.....+..++| +|+. ..++++++|. .|.+||++..
T Consensus 181 s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S~l~W-hP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCSVLAW-HPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred CCCCCceeccccCC----------------CcccccccCCCccceeeeee-CCCCceeeeeecCCCCCceeEeecccccC
Confidence 5 889999999977 56666666655444778886 7754 5666666543 6999998854
Q ss_pred ceEEEEecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
.++..+.+|+..|.+|.|++.+ +++++++.|+.|.+|+.+++++ -.+.....+.+.+.|+..+...+.+.+-||.|.|
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 4678888999999999999977 6799999999999999999874 6777778889999998888888899999999999
Q ss_pred EEecccc
Q 023246 232 LRLQRRQ 238 (285)
Q Consensus 232 wd~~~~~ 238 (285)
+.+....
T Consensus 324 ~sl~~~~ 330 (1049)
T KOG0307|consen 324 YSLQGTD 330 (1049)
T ss_pred eeeecCC
Confidence 9998754
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7e-19 Score=131.39 Aligned_cols=189 Identities=21% Similarity=0.207 Sum_probs=135.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
.+++.+++|.++ ..+++|+.||.|+.+|+.+++.. .+..|..+|++|.+++....+++|+ |
T Consensus 54 ~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~----------------~igth~~~i~ci~~~~~~~~vIsgsWD 115 (323)
T KOG1036|consen 54 GAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED----------------QIGTHDEGIRCIEYSYEVGCVISGSWD 115 (323)
T ss_pred CCceeeeeccCC--ceEEEeccCceEEEEEecCCcce----------------eeccCCCceEEEEeeccCCeEEEcccC
Confidence 578999999994 68999999999999999987521 2267999999999998777777755 9
Q ss_pred CcEEEEEcCCCCC-----------------------CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246 82 ELVYLFEKNMGLG-----------------------PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 82 ~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 138 (285)
++|++||.+.... .....+..+++++.......+...-+-.+.++++ -|++.-++.
T Consensus 116 ~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~eGy~~ 194 (323)
T KOG1036|consen 116 KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGEGYVV 194 (323)
T ss_pred ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCCceEE
Confidence 9999999984320 1111111222333332222222222234889997 678888899
Q ss_pred ecCCCeEEEEecCCC----ceEEEEeccc---------ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCc
Q 023246 139 GSDCGHLFIWKKKGG----KLVRLMVGDR---------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA 204 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~----~~~~~~~~h~---------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~ 204 (285)
++-||.|.+=.++.. +.-..|+.|. -+|++++|+|-...|+||+.||.|.+||+...+ +.++....
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 999999998776655 3445666664 379999999998899999999999999997765 56665554
Q ss_pred ccceee
Q 023246 205 EKIMKA 210 (285)
Q Consensus 205 ~~~~~~ 210 (285)
..+..+
T Consensus 275 ~SI~sl 280 (323)
T KOG1036|consen 275 TSISSL 280 (323)
T ss_pred CceEEE
Confidence 444343
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=5.6e-19 Score=130.95 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=156.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEecC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYND 81 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~d 81 (285)
++|.|+.|.|+ +..+++-. |..|.+|++..+..+ +........ .+|....++-+|+| +|+.+++.+|
T Consensus 124 g~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~--------vaev~ss~s-~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 124 GKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKI--------VAEVLSSES-AEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred CceeeEEEcCC-CCeeEEec-cCceEEEEcccCcch--------heeeccccc-ccccceecccccCCCCccceEEEeCC
Confidence 57899999995 46666554 899999999876531 000011111 34677788899999 6789999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCC-CceEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLVRL 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~-~~~~~~ 158 (285)
+++..||+++. +....+ ..|... +..+.| +|+.+ +|++|++||.|++||.+. ..++.+
T Consensus 193 ~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 193 STLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred CcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 99999999876 333332 345544 999998 78765 568899999999999875 557899
Q ss_pred EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCC------------------------------CCCCCCCCCcccc
Q 023246 159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAEKI 207 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~~~ 207 (285)
+.+|...|.++.|+|... ++++++.|..|.+|.... +.+.++..|...+
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 999999999999999654 588999999999996421 1123455678889
Q ss_pred eeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 208 MKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+...|.+.+.-++++.|.||.+.|=.+.+.
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 999998888889999999999998776654
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.9e-19 Score=141.49 Aligned_cols=201 Identities=11% Similarity=0.188 Sum_probs=154.2
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 86 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~i 86 (285)
|++..... .++++|+..+.|+|||++... +. ..+.+|...|+++.++-...+||+.+ .|.|.|
T Consensus 84 Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl--------------~h-r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 84 CVACASQS-LYEISGGQSGCVKIWDLRAKL--------------IH-RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred HHhhhhcc-eeeeccCcCceeeehhhHHHH--------------Hh-hhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence 45555553 799999999999999999543 33 33389999999999999999999976 789999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEEEE-ecccc
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLM-VGDRH 164 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~ 164 (285)
..+.++ .....|. +.....+.-+.| ++..++ |.+++++|.|.+||+....++..+ +.|..
T Consensus 148 h~~~t~----------------~~tt~f~-~~sgqsvRll~y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 148 HGTKTK----------------QKTTTFT-IDSGQSVRLLRY-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred EecccC----------------cccccee-cCCCCeEEEeec-ccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 999887 4555554 333345778888 777665 567899999999999876666554 57999
Q ss_pred cceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 165 VVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 165 ~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
+...++|+|.... |++.+.|+.|.+||.+......-.....+. ........+.++++|+..|.|..||++....+...
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl-stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL-STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceeeecCCc-ceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 9999999997665 899999999999999877643222233333 23333556679999999999999999987666544
No 140
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.5e-21 Score=150.63 Aligned_cols=205 Identities=54% Similarity=0.991 Sum_probs=163.8
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~d~ 82 (285)
....+++.+|.+.+++++|+.|..+++||.+.-... .....+..|++.++.....-.|++++|+.++ .+|++.+|-
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence 467889999999889999999999999998754321 2234678889998877777789999999655 688888999
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
.|++|....+.++.+.+.... .....+.+++|.+..+|.++-||.|..+|+++|++-|.|.+|+-.+++.+..+.+.
T Consensus 359 ~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 999997776655554444433 12233448999999899999999999999999999999999999999999999987
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeecccc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG 214 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 214 (285)
..-|+||.-+|.-..||+++.|.-|+||.+.+.+..........++..+...
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~~~ 487 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNKRE 487 (559)
T ss_pred cceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhccc
Confidence 7899999999999999999999999999986655444443444454444433
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.9e-18 Score=128.16 Aligned_cols=210 Identities=16% Similarity=0.200 Sum_probs=152.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEec-
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN- 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~- 80 (285)
.-|+++.|++-| +.+|||+.|++|+|||..+.. .++......+.|.+.|..+.|.+ -|+.+|+++
T Consensus 14 DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 14 DLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred ceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 458999999975 999999999999999986443 12233333478999999999986 468999965
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCc----
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK---- 154 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~---- 154 (285)
|+++.||.-.... ....-..+....++...+.. |+++.| .|. |-.+++++.||.++||+....-
T Consensus 82 Drtv~iWEE~~~~-------~~~~~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 82 DRTVSIWEEQEKS-------EEAHGRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred CCceeeeeecccc-------cccccceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 9999999874220 00001223344556666655 999998 764 6688999999999999865432
Q ss_pred --eEEEEe-------cccccceEeEEcCC---CCeEEEEecC-----CcEEEEcCCCC--C---CCCCCCCcccceeecc
Q 023246 155 --LVRLMV-------GDRHVVNQLEPHPH---IPMFATCGIE-----KTVKLWAPMPT--D---FPPLPDNAEKIMKANK 212 (285)
Q Consensus 155 --~~~~~~-------~h~~~v~~~~~~p~---~~~l~t~~~d-----~~i~iwd~~~~--~---~~~~~~~~~~~~~~~~ 212 (285)
+.+.+. .+..+..|+.|+|. .++|+.|+.+ +.+.||..... + +.++.++..++..+.|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 223333 35678899999984 3457777755 37888876322 2 4678889999999988
Q ss_pred ccCCC---ceEEEeCCCCeEEEEEecc
Q 023246 213 QGRED---HSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 213 ~~~~~---~~~~~~s~d~~i~vwd~~~ 236 (285)
.+.-+ .++++++.|| |+||.+..
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEee
Confidence 77643 3678899999 99999985
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=2.1e-18 Score=140.27 Aligned_cols=256 Identities=7% Similarity=0.058 Sum_probs=165.7
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~- 79 (285)
+...|..+.|-| +..+|++.+.|.++++||+.+.++.. ..+..+|.+.|.+++|.|... .|++|
T Consensus 99 H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G-------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 99 HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG-------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec-------------ceeecccccccchhhhccCCCcceeecc
Confidence 456789999999 77899999999999999999887421 113479999999999999886 66666
Q ss_pred cCCcEEEEEcCCCCCCCC----------CCC-CCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEecC-CCeE
Q 023246 80 NDELVYLFEKNMGLGPSP----------LSL-SPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSD-CGHL 145 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~-dg~v 145 (285)
.||.|.|||++-...... ... ....-+..+.+..-..+... ..|+.+.| .|...|++++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcce
Confidence 499999999975430000 000 00000000112222222222 11444544 67778888777 9999
Q ss_pred EEEecCCCceEEE--------Eecc---cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC---CCCCCCcc-cceee
Q 023246 146 FIWKKKGGKLVRL--------MVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PPLPDNAE-KIMKA 210 (285)
Q Consensus 146 ~vwd~~~~~~~~~--------~~~h---~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~-~~~~~ 210 (285)
+|||++....... +..| .-.+.++..+..|.+|...+.|+.|.+|++....+ ..+.++.. ..+..
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk 322 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK 322 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee
Confidence 9999986544322 2223 23577888888899977777799999999976543 33433322 23333
Q ss_pred ccccCCCceEEEeCCCCeEEEEEecccccceeE-----------eeec-cccccCCCCCcCeEEEeecCCCCCCC
Q 023246 211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRY-NAADFESDEEEGETYLLGFSDSDASS 273 (285)
Q Consensus 211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (285)
...+.++.++++++.|...++|.+...+....+ .+.+ ....++...++.++-++.+.++-++.
T Consensus 323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 334567889999999999999999876543321 1222 12223333667778888886665544
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=4.5e-18 Score=128.24 Aligned_cols=238 Identities=13% Similarity=0.216 Sum_probs=168.0
Q ss_pred CccceeEEEEcC----CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---C
Q 023246 2 NSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E 74 (285)
Q Consensus 2 ~~~~v~~~~~s~----~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~ 74 (285)
++.+|.+++|++ +.+..+||.+. ..+.+|.....-.+.. .+...-..|......++|+-+- .
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~----------lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL----------LQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee----------eeeccCCCCCcceEEEEEEecCCCCC
Confidence 457899999985 34456776665 5788898764321110 1111113477788888997653 2
Q ss_pred -EEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246 75 -LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 152 (285)
Q Consensus 75 -~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 152 (285)
++|. |.-|.|+|.|+.+. +....+.+|... |+.+.+...+.+++++++.|..|++|++++
T Consensus 106 p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred eeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6666 56999999999988 788999999987 999998444568999999999999999999
Q ss_pred CceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-----C-----------CC------------
Q 023246 153 GKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-----P-----------LP------------ 201 (285)
Q Consensus 153 ~~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-----~-----------~~------------ 201 (285)
..++..+ .+|...|.++.|++++.++++++.|.++++|++...... . ++
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9998887 479999999999999999999999999999998733210 0 00
Q ss_pred -CCcccceeeccccCCCceEEEeCCCCeEEEEEecc-cccc---------e----------------eEeeeccccccCC
Q 023246 202 -DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQTL---------A----------------YRERRYNAADFES 254 (285)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~-~~~~---------~----------------~~~~~~~~~~~~~ 254 (285)
.|...+-+.-|. +.++++-|.++.|..|.... .+.+ . .+.+.+-...++.
T Consensus 248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 011111111111 34788888999999998721 1110 0 1122334455778
Q ss_pred CCCcCeEEEeecCCCCC
Q 023246 255 DEEEGETYLLGFSDSDA 271 (285)
Q Consensus 255 ~~~~~~v~~~~~~~~~~ 271 (285)
+...|.+|+++++..+.
T Consensus 325 gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEP 341 (385)
T ss_pred ccCCCcEEEEECCCCCC
Confidence 88889999999887665
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=3.1e-17 Score=131.09 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=149.3
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCC
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE 82 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~ 82 (285)
.+.+++|+|++..++++++.++.|++||+.+++.. ..+ ..+. .+..++|+|+++.++. + .++
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--------------~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--------------GTL-PSGP-DPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--------------Eec-cCCC-CccEEEECCCCCEEEEEcCCCC
Confidence 46789999987444577888999999999887632 111 2222 2467899999986654 4 489
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~ 161 (285)
.|++||+.+. +.+..+.... . +.+++| +|++++++++..++ .+.+||.++++.+..+..
T Consensus 96 ~l~~~d~~~~----------------~~~~~~~~~~-~--~~~~~~-~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 96 LVTVIDIETR----------------KVLAEIPVGV-E--PEGMAV-SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred eEEEEECCCC----------------eEEeEeeCCC-C--cceEEE-CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 9999999875 4555554322 2 677886 99999999888765 567889988877665543
Q ss_pred ccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCCC-CCCCCCc-----cc--ceeeccccCCCce-EEEeCCCCeEEE
Q 023246 162 DRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF-PPLPDNA-----EK--IMKANKQGREDHS-RITLTPDVIMHV 231 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~-~~~~~~~-----~~--~~~~~~~~~~~~~-~~~~s~d~~i~v 231 (285)
...+..++|+|++++|+ ++..++.|++||+++++. ..+..+. .. ...+.+ .++++. +++...++.+.+
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEEE
Confidence 34567899999999875 445689999999987653 2221111 11 111211 333444 455566788999
Q ss_pred EEecccccceeE---------eeeccccccCCC-CCcCeEEEeecCCCC
Q 023246 232 LRLQRRQTLAYR---------ERRYNAADFESD-EEEGETYLLGFSDSD 270 (285)
Q Consensus 232 wd~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 270 (285)
||+++.+....+ .+.+++..+... ..++.|.+++...++
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999876554332 244455544432 345667777777655
No 145
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=7.7e-19 Score=146.76 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=158.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~ 82 (285)
..+++++.++= +++.+.|...|+|-+||+++|-....+. -...|.++|++++...-++.+++ +.+|
T Consensus 449 ~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~------------~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 449 INATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFG------------DSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccc------------cCccccCceeEEEecCCCceEEEccCcc
Confidence 46788899985 5999999999999999999986322110 12579999999999988888887 5699
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
.+..||.... ..+..+.-.. .+.++.+ +.....++.+.+|-.|+++|..+.+.++.+.+|
T Consensus 516 ilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 516 ILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eEEEEecCCc----------------ceeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 9999999876 4555554332 2777776 777788999999999999999999999999999
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC-CeEEEEEecc
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRLQR 236 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~i~vwd~~~ 236 (285)
.+.|++++|||+|++|++++.|++|++||+-++.+.-...-..+...+. .++...++++...| .-|++|.-..
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls-~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLS-FSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeE-ECCCCCEEEEEEecCceEEEEEchh
Confidence 9999999999999999999999999999998877533222333333333 35567788888888 7899996443
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=9.2e-18 Score=140.41 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=109.5
Q ss_pred eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--
Q 023246 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-- 196 (285)
Q Consensus 122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-- 196 (285)
.+++++. ++.|++.+.|+..|.|-+|++.+|-...++ ..|.++|+.++....++.+++++.+|.+++||.....
T Consensus 450 ~~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 3788886 999999999999999999999999887777 5899999999999999999999999999999975432
Q ss_pred ----------------------------------------CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 197 ----------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 197 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
++.+.+|...+.... .+++++.+++++-|++|++||+.+
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccC
Confidence 122334555554443 366788999999999999999999
Q ss_pred cccceeE---------eeeccccccC-CCCCcCeEEEe
Q 023246 237 RQTLAYR---------ERRYNAADFE-SDEEEGETYLL 264 (285)
Q Consensus 237 ~~~~~~~---------~~~~~~~~~~-~~~~~~~v~~~ 264 (285)
...+-.+ ..+|++..++ .|.+...||++
T Consensus 608 ~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 608 GTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8765543 4566666554 33444446554
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=1.4e-17 Score=133.10 Aligned_cols=204 Identities=8% Similarity=0.059 Sum_probs=136.3
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C-C
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-E 82 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d-~ 82 (285)
.+..++|+|++..+++++..++.+++||+.+.+.. ..+ .+...+.+++|+|++++++++. + .
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEI--PVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEe--eCCCCcceEEECCCCCEEEEEecCCC
Confidence 35678999987444455667899999999876522 111 1123467899999999888764 4 4
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCceEEEEec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.+.+||..+. +....+... .. ...++| ++++++++. +..++.|++||+++++.+..+..
T Consensus 138 ~~~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~-s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 138 MAHFIDTKTY----------------EIVDNVLVD-QR--PRFAEF-TADGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred eEEEEeCCCC----------------eEEEEEEcC-CC--ccEEEE-CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 5778898765 333333222 12 566886 999998854 45699999999999888776643
Q ss_pred cc-----c--cceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEe-CCCCeEEEE
Q 023246 162 DR-----H--VVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL-TPDVIMHVL 232 (285)
Q Consensus 162 h~-----~--~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~i~vw 232 (285)
+. . ....++|+|+++++ ++.+.++.+.+||+++.++.....+...+..+.+ .+++.+++++ ..++.|.+|
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF-TPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE-CCCCCEEEEEcCCCCeEEEE
Confidence 21 1 23468899999984 4445567899999987765322122333444443 4455566654 568999999
Q ss_pred EecccccceeEee
Q 023246 233 RLQRRQTLAYRER 245 (285)
Q Consensus 233 d~~~~~~~~~~~~ 245 (285)
|+++.+.+..+..
T Consensus 277 d~~~~~~~~~~~~ 289 (300)
T TIGR03866 277 DVAALKVIKSIKV 289 (300)
T ss_pred ECCCCcEEEEEEc
Confidence 9999877666543
No 148
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1.2e-17 Score=139.48 Aligned_cols=252 Identities=15% Similarity=0.139 Sum_probs=173.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE-e
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-Y 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s-~ 79 (285)
..+|+|+.|+|..++++|.|+.+|+|.+||++.+.... . .........|..+++.+.|..+.. -|++ +
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~--s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------P--SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------C--cccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 46899999999999999999999999999999775311 1 123333467999999999987543 2555 6
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-----
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----- 154 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----- 154 (285)
.||.|+.|+++.-..+.......... .....+.. ...++.++|...+...++.|+++|.|..-+....+
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~---~~~~~~~~---~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKK---HKGQQSSK---AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred cCCcEeeeeccccccchhhccccccc---cccccccc---ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 79999999887652111110000000 00001111 12378899855577789999999999884433221
Q ss_pred ---eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246 155 ---LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 155 ---~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i 229 (285)
....+..|.++|+++.++|-+..++..+.|.+++||... ...+..+..+...+....|.......++++..+|.+
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 133455688999999999988875444449999999875 233455555666677788766667788999999999
Q ss_pred EEEEecccccce------------eEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 230 HVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 230 ~vwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
.+||+....... ...+++.+..++.++..|.++++.+.+.
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 999998653222 2234555777888888888888887654
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=130.10 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=142.6
Q ss_pred CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc---ceEEEEEecCCCEEEEecCCcEEEEEc
Q 023246 13 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNTSELLISYNDELVYLFEK 89 (285)
Q Consensus 13 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~~~~~l~s~~d~~i~iwd~ 89 (285)
|+ ..++|+.+.+.-|++||..+|++...+.. ..|.. ...+++|+|||..|++|....|++||+
T Consensus 121 P~-t~l~a~ssr~~PIh~wdaftG~lraSy~~-------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt 186 (406)
T KOG2919|consen 121 PS-TNLFAVSSRDQPIHLWDAFTGKLRASYRA-------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDT 186 (406)
T ss_pred Cc-cceeeeccccCceeeeeccccccccchhh-------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeec
Confidence 54 47999999999999999999986433221 12222 345899999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccCCCCceEeec-cc-CceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246 90 NMGLGPSPLSLSPEDLQKREEPQVYSG-HR-NSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166 (285)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 166 (285)
.... +......++.. .. ...-|.+++| +| +.+.++.|+....+-+|.-....++..+.+|.+.|
T Consensus 187 ~RpG------------r~c~vy~t~~~~k~gq~giisc~a~-sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 187 SRPG------------RDCPVYTTVTKGKFGQKGIISCFAF-SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred cCCC------------CCCcchhhhhcccccccceeeeeec-cCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 5431 00011111111 11 1123778887 66 55688999999999999988889999999999999
Q ss_pred eEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC--CCCCCCCcccceeecc--ccCCCceEEEeCCCCeEEEEEecc
Q 023246 167 NQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
+.+.|+++|+.|.+|. .|..|..||++... +..+..|......... ..+.++.+++|+.||.|++||++.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999999999999887 46789999998654 3344434331111111 234567899999999999999988
No 150
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=2e-19 Score=137.04 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=128.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
..|.++.|+|-...+|+++..|++|.|||++.+..+... --...-+.|+|+|.+-.|+++ .|.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV----------------i~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV----------------ILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCcccee----------------eeeccccceecCccccceeeccccc
Confidence 357899999987789999999999999999988743221 112345689999977666666 499
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG- 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~- 161 (285)
.++.||++... ..+..+.+|.+. |.++.| +|.|+.+++|+.|.+|+||..+.+..-.....
T Consensus 252 nlY~~DmR~l~---------------~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 252 NLYTYDMRNLS---------------RPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred cceehhhhhhc---------------ccchhhccccee--EEEecc-CCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 99999998764 577888899977 999998 99999999999999999999987754433321
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
.-+.|.++.|+-|.+++++|+.|+.|++|....
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 236799999999999999999999999998653
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.2e-18 Score=128.96 Aligned_cols=195 Identities=14% Similarity=0.222 Sum_probs=143.1
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEE-ecCCcEEEEEcCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGL 93 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s-~~d~~i~iwd~~~~~ 93 (285)
..+|++.+.|+|++||..+++.+ ..+ .+|...+..+.|..+ .+.+.+ ++||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 56999999999999999998632 222 677778888999874 456666 469999999998762
Q ss_pred CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC----CCeEEEEecCCCce-EEEE-ecccccce
Q 023246 94 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN 167 (285)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~vwd~~~~~~-~~~~-~~h~~~v~ 167 (285)
......+..+. +.+..+++. +-+++.+++|.. +-.|.+||++..+. +..+ ..|...|+
T Consensus 106 --------------e~a~~~~~~~~-~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 106 --------------ESARISWTQQS-GTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred --------------hhhheeccCCC-CCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 01122233333 223566664 557778888764 77899999998776 6555 47999999
Q ss_pred EeEEcCCCC-eEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246 168 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 242 (285)
Q Consensus 168 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~ 242 (285)
++.|+|..+ +|++|+.||.|.++|++... +.....+...+-.+.|....-..+.+.+......+|++..+.....
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999999655 69999999999999996553 3344446666777777666544688899999999999988764433
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=5.8e-18 Score=139.76 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=164.4
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec------------CCC
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------------TSE 74 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~------------~~~ 74 (285)
-++.|+|++ ..|.+.-.|..++|||++.-..... + ...-.|...|+.+.--| .+.
T Consensus 328 IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk----------~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c 394 (1080)
T KOG1408|consen 328 IACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGK----------C--SSMLYHSACIWDVENLPCNVHSPTAACLPRGC 394 (1080)
T ss_pred eEEEecCCC-ceEEEEEcCceEEEEeccccccccc----------e--eeeeeccceeeeeccccccccCcccccCCccc
Confidence 367899986 7888899999999999986542211 1 11134666666665544 233
Q ss_pred EEEEecCCcEEEEEcCCCCCCCC-----C-----CCCCcc------------ccCCCCceEeecccCceeeeeEEEecCC
Q 023246 75 LLISYNDELVYLFEKNMGLGPSP-----L-----SLSPED------------LQKREEPQVYSGHRNSQTVKGVNFFGPN 132 (285)
Q Consensus 75 ~l~s~~d~~i~iwd~~~~~~~~~-----~-----~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 132 (285)
++.+++|++|++|++........ . .+...+ +........ ...+. .+.+++. +|+
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~-~d~r~--G~R~~~v-Sp~ 470 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST-CDSRF--GFRALAV-SPD 470 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh-cCccc--ceEEEEE-CCC
Confidence 44446799999999986320000 0 000000 000001111 12232 3899997 999
Q ss_pred CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcC---CCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccc
Q 023246 133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKI 207 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 207 (285)
+++|++|..-|+++||++...+.+..+.+|...|.|+.++. ..++|++++.|..|++||..... ++++.+|...+
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999888889999999999999974 34569999999999999985432 34455544443
Q ss_pred eeeccc------------------------------------------------cCCCceEEEeCCCCeEEEEEeccccc
Q 023246 208 MKANKQ------------------------------------------------GREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 208 ~~~~~~------------------------------------------------~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
..+... .+...++++++.|..|+||+++++++
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 222111 11234788999999999999999877
Q ss_pred ceeEee-------------eccccccCCCCCcCeEEEeecCCCCC
Q 023246 240 LAYRER-------------RYNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 240 ~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
...++. .|.+.+++....+..+-+++|..|+-
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 766532 33344555555555677778877654
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=4.8e-18 Score=126.14 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=141.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-ec
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~~ 80 (285)
.++++++.|+.-.++++.+.+-|-+..|||++++.. ..+++.+-.|...|..|+|...+. .||+ |.
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccc------------cceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 368999999998889999999999999999998731 134555578999999999999774 7777 67
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCC-CceEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKG-GKLVRL 158 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~-~~~~~~ 158 (285)
||.+++||++... .....++......+...++|...+-+++++-. +...|.+.|++. ..++..
T Consensus 218 DGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 218 DGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred CCcEEEEEecccc---------------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9999999998762 22223333322344788886344667777744 456799999875 567899
Q ss_pred EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC-------CCCCCCcccceeeccccCCCceE
Q 023246 159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-------PPLPDNAEKIMKANKQGREDHSR 220 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 220 (285)
+.+|++.|+.++|.|... .++||+.|..+.+||+.+... ... .....+..+.|.+.....+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEE
Confidence 999999999999999765 599999999999999865321 112 1445566777655444443
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.4e-17 Score=124.64 Aligned_cols=214 Identities=11% Similarity=0.146 Sum_probs=146.7
Q ss_pred ccceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEEe
Q 023246 3 SIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISY 79 (285)
Q Consensus 3 ~~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~ 79 (285)
.+.|..+.| +|.=+..+|+++.|+++.||.-..... +..-..+.....+......|+.++|.|.. -++|++
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred CCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence 467889999 455458999999999999998642211 11112233344446678899999999965 477775
Q ss_pred -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-------cccCceeeeeEEEecCC---CcEEEEecCC-----C
Q 023246 80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------GHRNSQTVKGVNFFGPN---DEYVMSGSDC-----G 143 (285)
Q Consensus 80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~---~~~l~~~~~d-----g 143 (285)
.||.++||+.... .++..+...+.++ .+.. ...|+.| ++. ..+|+.|+.+ +
T Consensus 133 ~aDG~lRIYEA~dp----------~nLs~W~Lq~Ei~~~~~pp~~~~~--~~~CvsW-n~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 133 SADGILRIYEAPDP----------MNLSQWTLQHEIQNVIDPPGKNKQ--PCFCVSW-NPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred ccCcEEEEEecCCc----------cccccchhhhhhhhccCCcccccC--cceEEee-ccccccCceEEEEcccCCcccc
Confidence 5999999998654 3344444444444 2332 3677885 653 4578888776 5
Q ss_pred eEEEEecCCC----ceEEEEecccccceEeEEcCC----CCeEEEEecCCcEEEEcCCCCC-------------------
Q 023246 144 HLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPH----IPMFATCGIEKTVKLWAPMPTD------------------- 196 (285)
Q Consensus 144 ~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~----~~~l~t~~~d~~i~iwd~~~~~------------------- 196 (285)
.++||....+ ..+.++..|..+|++++|.|+ ..+||+++.|| |+||.+....
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 7888875433 245677899999999999995 34599999999 9999976311
Q ss_pred --CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 197 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+..+.+|...+-...| ...+..+.+.+.||.|++|...-.
T Consensus 279 ~~vs~~~~H~~~VWrv~w-NmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRW-NMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEeeeccCCCCceEEEEE-eeeeeEEeecCCCceeeehhhhhh
Confidence 1224456666655544 334557888899999999975533
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=135.87 Aligned_cols=235 Identities=14% Similarity=0.179 Sum_probs=157.3
Q ss_pred EEEcC--CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEE
Q 023246 9 IVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 85 (285)
Q Consensus 9 ~~~s~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~ 85 (285)
..|++ ....+||.+..||.|.++|......... + +.......|...|..+.|.|....|++. .|.+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e---e------~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE---E------RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh---h------hhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 45654 3447999999999999999875542100 0 1112226899999999999944567774 599999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceE--eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---------
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--------- 154 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--------- 154 (285)
+||+... ++... +.+|... +.+++|...+...|++|+.||.|.|||++-..
T Consensus 126 ~Wdvk~s----------------~l~G~~~~~GH~~S--vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~ 187 (720)
T KOG0321|consen 126 PWDVKTS----------------RLVGGRLNLGHTGS--VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN 187 (720)
T ss_pred eeeeccc----------------eeecceeecccccc--cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence 9999887 45544 8899977 99999844456678999999999999986321
Q ss_pred ------------------eEEEEecccccceE---eEEcCCCCeEEEEec-CCcEEEEcCCCCCC---------CCCCCC
Q 023246 155 ------------------LVRLMVGDRHVVNQ---LEPHPHIPMFATCGI-EKTVKLWAPMPTDF---------PPLPDN 203 (285)
Q Consensus 155 ------------------~~~~~~~h~~~v~~---~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~---------~~~~~~ 203 (285)
.++..++|...|.+ +.+..|...||+++. |+.|++||++.... ..+..+
T Consensus 188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~ 267 (720)
T KOG0321|consen 188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH 267 (720)
T ss_pred hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc
Confidence 01122234445555 556678889999997 99999999975421 122223
Q ss_pred ccc---ceeeccccCCCceEEEeCCCCeEEEEEecccccce--------------eEeeeccccccCCCCCcCeEEEeec
Q 023246 204 AEK---IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA--------------YRERRYNAADFESDEEEGETYLLGF 266 (285)
Q Consensus 204 ~~~---~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~ 266 (285)
... +..+.. ...+.++++-+.|+.|++|++.+..+-. +-..+++...+.++..+...|.+-.
T Consensus 268 skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 268 SKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred ccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 111 222221 1223466666669999999998643211 1145677888888877777887766
Q ss_pred CCCCC
Q 023246 267 SDSDA 271 (285)
Q Consensus 267 ~~~~~ 271 (285)
+.-+.
T Consensus 347 s~~e~ 351 (720)
T KOG0321|consen 347 SSPEA 351 (720)
T ss_pred cCccC
Confidence 55433
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=2.2e-18 Score=133.18 Aligned_cols=181 Identities=16% Similarity=0.242 Sum_probs=141.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
...+|.++.|.+...+.+|||+.|..|+||-+..++.... .........+..|...|+++.|+|+|++||+|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence 3568899999997655999999999999999987653211 011123344478999999999999999999975
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCcc--ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
+|.|.+|-...-. +..... ..+ ...+...+.+.+|... +..++| +++++++++++.|..+++||+..|+.+..
T Consensus 86 ~g~v~lWk~~~~~-~~~~d~-e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 86 GGEVFLWKQGDVR-IFDADT-EADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred CceEEEEEecCcC-Cccccc-hhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEee
Confidence 8999999876321 101100 011 1224455677788866 999995 99999999999999999999999999999
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
+..|...|..++|.|.++++++-+.|...+.+.+.
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999999999999999999999999877666654
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.3e-17 Score=136.86 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=158.9
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
+.|..++|+|.| .+|++.+.|.+-|++---..+. ....+..+ .-|...++|++|-+....|++| ..+
T Consensus 362 ~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~--------~wHEiaRP---QiHGyDl~c~~~vn~~~~FVSgAdEK 429 (764)
T KOG1063|consen 362 DGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ--------EWHEIARP---QIHGYDLTCLSFVNEDLQFVSGADEK 429 (764)
T ss_pred ccceeeeecCCC-CEEEEeccccceeeeccccccc--------ceeeeccc---ccccccceeeehccCCceeeecccce
Confidence 578999999976 8999999999999986542210 01111111 4588889999999865666775 578
Q ss_pred cEEEEEcCCCC---------------------------CCCCCCCCC---cc----------------------------
Q 023246 83 LVYLFEKNMGL---------------------------GPSPLSLSP---ED---------------------------- 104 (285)
Q Consensus 83 ~i~iwd~~~~~---------------------------~~~~~~~~~---~~---------------------------- 104 (285)
.+++|+..... +.....+-. ..
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 88999985322 000000000 00
Q ss_pred --ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC-----CeEEEEecCCCceEEEEecccccceEeEEcCCCCe
Q 023246 105 --LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM 177 (285)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 177 (285)
..-+..++.+.+|... |++++. +|+++++++++.. ..|++|+..+-.....+.+|.-.|+.++|+|++++
T Consensus 510 q~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred HHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence 1112345667788877 999998 9999999998763 46999999988888899999999999999999999
Q ss_pred EEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 178 FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 178 l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
|++.+.|.++.+|....... ...+.|. +++-...+.+++.+++++|.|.+|++|.....
T Consensus 587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEeecCceEEeeeeecccchhhhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999998744322 1233343 44444445677778999999999999998776
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=7.8e-17 Score=128.08 Aligned_cols=231 Identities=14% Similarity=0.217 Sum_probs=163.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
+..|....|+|.+++++++.+. +.+..|+.+.+.+.+.. ..+.......|.|++|.++|..+..-++|
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~-----------~~fek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQ-----------GIFEKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEe-----------eccccccceEEEEEEEcCCCCEEeecCCc
Confidence 3456788999998888887765 88999999887643221 11112223679999999999988888899
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-------
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------- 155 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------- 155 (285)
.|.||+..+. +..+....|... |.+++. -.+|.++- |+.|+.|..||-.-.+.
T Consensus 268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLLS-GGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEee-cCccceEEeccccccccccccCch
Confidence 9999999766 455555578866 999986 67776555 99999999999321100
Q ss_pred ----EE-----------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC
Q 023246 156 ----VR-----------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD 202 (285)
Q Consensus 156 ----~~-----------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 202 (285)
++ ...+|......++.+|+.+.++|++.|+.+++|+-.......+
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-- 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-- 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE--
Confidence 00 2246777889999999999999999999999999211111111
Q ss_pred CcccceeeccccCCCceEEEeCCCCeEEEEEecccc---------cceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246 203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (285)
-..+..+.. ......++.|+..|...+.|..+.. ++.....+|++..++.++.++.+|++..+.+
T Consensus 406 ~~d~~~~~~--fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 406 IEDPAECAD--FHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ecCceeEee--ccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 111222221 2223378888889999998887643 3444567888888888888888998887654
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-17 Score=132.53 Aligned_cols=232 Identities=14% Similarity=0.092 Sum_probs=167.7
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~ 83 (285)
.+.++.|+..+--.+++.+.|..+++|.-.... .. ........+ ..-.|++......+++++ ..+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~---------Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PE---------VPRVRKLTG--DNAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCC--Cc---------cceeecccc--chHHHHhhhhcceeeeccCcCce
Confidence 478899999652223334568889999754321 00 011111111 123344444445788885 5999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD- 162 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h- 162 (285)
|+|||++.. .+.+.+.+|+.. |+++.| +....||++++..|.|.+..+.++.....|...
T Consensus 103 Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 103 VKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred eeehhhHHH----------------HHhhhccCCcce--eEEEEe-cCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 999999876 566778889855 999998 888899999999999999999998888777644
Q ss_pred cccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 163 RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
...|.-+.++|..+. |.+++.+|.|.+||..+... .....|..+...+........++++.+-|..|.+||.+.+..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 345668999998877 78889999999999987653 334456666555555555677899999999999999987654
Q ss_pred cee---------EeeeccccccCCCCCcCeEEEeecCC
Q 023246 240 LAY---------RERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 240 ~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
... +.+.+++..|..+...|++|.+++..
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 433 35677788888888888888888654
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=6.3e-18 Score=137.91 Aligned_cols=208 Identities=14% Similarity=0.193 Sum_probs=151.8
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY- 79 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~- 79 (285)
++.-|+.+.|+|.+...||+++.||.|++|.+..+.+... ...+..++..|...|+++.|+|-. ..|+++
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 4567999999998889999999999999999987653221 114555568899999999999965 477775
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 158 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~ 158 (285)
.|-+|++||+.+. +....+.+|++. |.+++| +|+|+.+++.+.||+|++|+-+.++ +++.
T Consensus 698 yd~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW-SpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 698 YDSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred ccceeeeeehhhh----------------hhhheeccCcCc--eeEEEE-CCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 5999999999988 678889999988 999995 9999999999999999999987654 4444
Q ss_pred Eeccc-ccceEeEEcCCCCeEEEEecCC----cEEEEcCCCCCCCC-----CCCCcccceeeccccCCCceEEEeCCCCe
Q 023246 159 MVGDR-HVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLTPDVI 228 (285)
Q Consensus 159 ~~~h~-~~v~~~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 228 (285)
-++.. ..-..+.|--+|++++..+.|+ .|.+||...-.... +....... -.......+-++++|-.|..
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L-vP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL-VPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc-cccccCCCceEEEecCCCce
Confidence 33221 2234467777899987777664 68888865433211 11111111 11111112347899999999
Q ss_pred EEEEEeccc
Q 023246 229 MHVLRLQRR 237 (285)
Q Consensus 229 i~vwd~~~~ 237 (285)
|++|.+-..
T Consensus 838 v~~yEv~~e 846 (1012)
T KOG1445|consen 838 VNMYEVIYE 846 (1012)
T ss_pred EEEEEecCC
Confidence 999987654
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=120.71 Aligned_cols=212 Identities=12% Similarity=0.136 Sum_probs=147.2
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.-+.+.|+||-..++++.-...++++|-+...+-- .. .-+...+...++...|...+..+-....+.++++++ |..
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG-~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG-SG--SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccC-CC--CcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 34679999987667777777889999988654311 00 001111122234467888888888888889999965 999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---CC-----ce
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GG-----KL 155 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~~-----~~ 155 (285)
|++|++. + +.+..+...... .+..+. +|+|+++++++..--|++|..- .| ..
T Consensus 211 i~lw~lk-G----------------q~L~~idtnq~~--n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r 270 (420)
T KOG2096|consen 211 ICLWDLK-G----------------QLLQSIDTNQSS--NYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR 270 (420)
T ss_pred EEEEecC-C----------------ceeeeecccccc--ccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhhhh
Confidence 9999998 4 466776665544 566675 9999999999999999999853 22 24
Q ss_pred EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-----CCCCCC-------CCcccceeeccccCCCceEEEe
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLP-------DNAEKIMKANKQGREDHSRITL 223 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 223 (285)
+..+++|++.|..++|+|+...++|.+.||++++||.+-. ....++ ........+.. + .+...++.
T Consensus 271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l-s-P~g~~lA~ 348 (420)
T KOG2096|consen 271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL-S-PSGDSLAV 348 (420)
T ss_pred hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe-C-CCCcEEEe
Confidence 6788999999999999999999999999999999997522 111111 11122223322 1 22345566
Q ss_pred CCCCeEEEEEecccccce
Q 023246 224 TPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 224 s~d~~i~vwd~~~~~~~~ 241 (285)
+....++++..++++...
T Consensus 349 s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYP 366 (420)
T ss_pred ecCCceEEEEcccCccch
Confidence 667788999887765443
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=131.28 Aligned_cols=199 Identities=14% Similarity=0.192 Sum_probs=149.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
.+.|++++.+|.+ ..++.|+.||.+..++...++. .....+...+++|.+++|+|++..+++|+ |
T Consensus 110 gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I-------------~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 110 GGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKI-------------TYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CcceeEEEeCCcc-ceEEeecCCceEEEEecCCceE-------------EEEeecccccceEEEEEecCCccEEEecccC
Confidence 5789999999975 8999999999777777776653 22333345578999999999999888875 9
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCce-----Eeeccc-CceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 155 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 155 (285)
|.|++||...+ ..++ ...... .+.-|.++.|. ....+++|...|+|.+||...+.+
T Consensus 176 g~Iriwd~~~~----------------~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 176 GVIRIWDVKSG----------------QTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred ceEEEEEcCCC----------------ceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcch
Confidence 99999999887 2322 111111 22237888874 455899999999999999999999
Q ss_pred EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 230 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~ 230 (285)
+..+..|...|.+++..+++.++++++.|+.|..+...+.+- .....|...+.+...... .+++|+.|..+.
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLA 314 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEE
Confidence 999999999999999999999999999999998888765521 112224433433322222 788899998888
Q ss_pred EEEecc
Q 023246 231 VLRLQR 236 (285)
Q Consensus 231 vwd~~~ 236 (285)
+=..+.
T Consensus 315 i~~s~~ 320 (691)
T KOG2048|consen 315 ICSSRE 320 (691)
T ss_pred Eccccc
Confidence 876655
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=1.5e-17 Score=125.46 Aligned_cols=216 Identities=14% Similarity=0.157 Sum_probs=147.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
...|+.+.++|++++++++++.|.+||+|++++..++ ++..=..+|.+.|.++.|+++|.+++++ .|
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv------------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV------------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE------------EEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence 5689999999999999999999999999999998744 2222237899999999999999999995 59
Q ss_pred CcEEEEEcCCCCCCC------CC--CCCCccccCC-CCce---EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246 82 ELVYLFEKNMGLGPS------PL--SLSPEDLQKR-EEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~------~~--~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 149 (285)
..|.+|++....-.. .. ......+++. .... +-..|++. |-|+.|+ |.++++-+-++.|..|.
T Consensus 203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny--VDCvrw~---gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY--VDCVRWF---GDFILSKSCENAIVCWK 277 (385)
T ss_pred ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch--HHHHHHH---hhheeecccCceEEEEe
Confidence 999999998443000 00 0000001111 0111 22335544 7777763 68999999999999998
Q ss_pred c-CCCc-------------eEEEEecccccceEe--EEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC----Cccccee
Q 023246 150 K-KGGK-------------LVRLMVGDRHVVNQL--EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEKIMK 209 (285)
Q Consensus 150 ~-~~~~-------------~~~~~~~h~~~v~~~--~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~ 209 (285)
. +-++ .+..+......|.-+ +|+|-+++||.|...|.|.+||++......... .....+.
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 6 2111 233444444555555 456778899999999999999997665422211 1222333
Q ss_pred eccccCCCceEEEeCCCCeEEEEEec
Q 023246 210 ANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 210 ~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
....+.++..++....|++|--||..
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 33345567788999999999888854
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.6e-17 Score=135.64 Aligned_cols=193 Identities=14% Similarity=0.146 Sum_probs=136.9
Q ss_pred eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-ecCCcEEEEEcCCCCCCCCCC
Q 023246 22 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLS 99 (285)
Q Consensus 22 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~ 99 (285)
.+..|.|-||++.....+. .. ....+ -....|+.+.|.|-. +.|+. +.||.|++|.+..+..+
T Consensus 599 ~g~gG~iai~el~~PGrLP-----Dg----v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~---- 663 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLP-----DG----VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP---- 663 (1012)
T ss_pred cCCCceEEEEEcCCCCCCC-----cc----ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC----
Confidence 3557999999998543110 00 11122 134579999999954 56776 57999999999766311
Q ss_pred CCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEE
Q 023246 100 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179 (285)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 179 (285)
.........+..|..+ |+.+.|+.-....|++++.|-+|++||+.+++....+.+|++.|..++|+|+|+.++
T Consensus 664 -----e~~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 664 -----ENEMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred -----cccCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 1122455677888876 999998444678899999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEcCCCCCC--CCCCCCc-ccceeeccccCCCceEEEeCC----CCeEEEEEeccc
Q 023246 180 TCGIEKTVKLWAPMPTDF--PPLPDNA-EKIMKANKQGREDHSRITLTP----DVIMHVLRLQRR 237 (285)
Q Consensus 180 t~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~s~----d~~i~vwd~~~~ 237 (285)
+.+.||+|++|+++.++. ..-.+.. .+--.+.| .-++++++..+- ..+|.+||.+.-
T Consensus 737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w-acdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW-ACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eeecCceEEEeCCCCCCCccccCCCCccCcceeEEE-EecCcEEEEecccccchhhhhhhhhhhc
Confidence 999999999999987753 2222221 11222333 234455544333 477888887653
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.7e-18 Score=135.66 Aligned_cols=225 Identities=16% Similarity=0.225 Sum_probs=158.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccc-------------------------------
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF------------------------------- 51 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------------------- 51 (285)
.+.|.+++.+|. +..|++|+.||+|+||.+.+++++..+..+..+...
T Consensus 400 tg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 400 TGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE 478 (733)
T ss_pred CCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence 567999999996 499999999999999999999876554432211110
Q ss_pred ------------------------ccc---------ccCCCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCC
Q 023246 52 ------------------------CPR---------HLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLG 94 (285)
Q Consensus 52 ------------------------~~~---------~~~~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~ 94 (285)
... .+.-.|..+|+.+.|+..|.||++.. ...|.|+++.....
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 000 01124677899999999999999832 46799999976663
Q ss_pred CCCCCCC-------------------------CccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246 95 PSPLSLS-------------------------PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149 (285)
Q Consensus 95 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 149 (285)
..+-..+ ..++.+...++.+.. +...|..+++ +|.|..++.|+.|+.+..||
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t--g~kwiS~msi-hp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT--GSKWISSMSI-HPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc--CCeeeeeeee-cCCCCeEEEecCCCeeEEEE
Confidence 3221111 111111122222222 2244788887 89999999999999999999
Q ss_pred cCCC-ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC-------CCC---CCCCCCCccc----ceeecccc
Q 023246 150 KKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-------PTD---FPPLPDNAEK----IMKANKQG 214 (285)
Q Consensus 150 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-------~~~---~~~~~~~~~~----~~~~~~~~ 214 (285)
+.-+ ++..++..|...+++|+|++.-.+|++|+.||++.++.-. +.. +..+.+|... +....| .
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w-H 714 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW-H 714 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc-c
Confidence 8744 5778888899999999999999999999999999988531 111 3456666554 444433 3
Q ss_pred CCCceEEEeCCCCeEEEE
Q 023246 215 REDHSRITLTPDVIMHVL 232 (285)
Q Consensus 215 ~~~~~~~~~s~d~~i~vw 232 (285)
+....+++++.||+|++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 455688999999999998
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.5e-17 Score=132.33 Aligned_cols=219 Identities=11% Similarity=0.165 Sum_probs=156.5
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.|..++|+|-. ..|++++.||++++|++..... .....-.|+. .+.+|.++|.|++.+++++.+.+|. ||+
T Consensus 296 ~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~-s~~~~~epi~------tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 296 CIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK-SAEKDVEPIL------TFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhhhhcCCCC-CeEEEeccccchhhhhhcccCC-ccccceeeeE------EEecccCceEEEEecCCceEEEeeccCce
Confidence 46678888864 7999999999999999943211 1111112333 3389999999999999999999965 999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-E-----
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-R----- 157 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~----- 157 (285)
|+.|++.....+ ... ..+......+.+|... +..+++ ++....|++++.||+++.|+.....+. .
T Consensus 368 I~~w~~p~n~dp----~ds--~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 368 IRCWNLPPNQDP----DDS--YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred eeeeccCCCCCc----ccc--cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccCCccc
Confidence 999988622100 000 1111345678899987 999998 888888999999999999996543330 0
Q ss_pred --------------------------------------EEe-------cccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 158 --------------------------------------LMV-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 158 --------------------------------------~~~-------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
.+. .....+.-+.++|.....+++..|+.|+++|.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 000 00134667888999999999999999999999
Q ss_pred CCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246 193 MPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
..+++ .....|...+..+. ..+.+.++++++.|+.+++|.+..+....
T Consensus 519 ~~~~~l~s~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 519 KTGKILHSMVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred cccccchheeeccceeccee-ecCCCceEEeecCCceeehhhccchheee
Confidence 88774 55555555543332 24456699999999999999987765543
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=3e-18 Score=143.51 Aligned_cols=231 Identities=16% Similarity=0.298 Sum_probs=171.8
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++..|.|+.|...+ .++++|+.|..|+||.+.+.. |...+ .+|.+.|+.++.+....++++++
T Consensus 189 H~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIAAASN 252 (1113)
T ss_pred hhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhhhccc
Confidence 34579999999975 999999999999999999887 55555 89999999999999988888865
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE---
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--- 157 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--- 157 (285)
|..|++|.+..+ .++..+.+|++. |++++| +|-. +.+.||++++||.+-.-.+.
T Consensus 253 D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 253 DKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred CceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccccCCC
Confidence 999999999988 789999999988 999998 8765 77899999999987110000
Q ss_pred -----------EE----------------ecccccceEeEEcCCCCeEEE-----------EecCCcEEEEcCCCCC-CC
Q 023246 158 -----------LM----------------VGDRHVVNQLEPHPHIPMFAT-----------CGIEKTVKLWAPMPTD-FP 198 (285)
Q Consensus 158 -----------~~----------------~~h~~~v~~~~~~p~~~~l~t-----------~~~d~~i~iwd~~~~~-~~ 198 (285)
.+ .+.......++|....-.+++ +-.+..+++|++..+. .+
T Consensus 310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred CCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 00 000111222333332222333 3344557778876664 45
Q ss_pred CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee----------EeeeccccccCCCCCcCeEEEeecCC
Q 023246 199 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSD 268 (285)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (285)
.+.+|...++.+..-..+.+...++..||...|||+-.+-.+.. ..++++++.++..++-|.+|+.++..
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 66667777666655555677888999999999999987644332 25788888999999999999999877
Q ss_pred CCC
Q 023246 269 SDA 271 (285)
Q Consensus 269 ~~~ 271 (285)
++.
T Consensus 470 s~s 472 (1113)
T KOG0644|consen 470 SKS 472 (1113)
T ss_pred Ccc
Confidence 654
No 168
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.76 E-value=5.1e-16 Score=123.51 Aligned_cols=209 Identities=11% Similarity=0.121 Sum_probs=155.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
|.-|.|++|.+++ -++||.++|.|.||+..+.+ ..+.. ..|.+.|.+++.-.+|.+|..+.|.
T Consensus 246 kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~k~~-~aH~ggv~~L~~lr~GtllSGgKDR 308 (626)
T KOG2106|consen 246 KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------ISKQV-HAHDGGVFSLCMLRDGTLLSGGKDR 308 (626)
T ss_pred ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EEeEe-eecCCceEEEEEecCccEeecCccc
Confidence 3679999999964 68899999999999997665 33344 3899999999999999998855699
Q ss_pred cEEEEEcCCCCCCCCCCCCCcc--------------------------ccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPED--------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
.|..||-.... ..+.++.... +.+ .......+|... ...++. .|+.+.+
T Consensus 309 ki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~-~f~~~v~gh~de--lwgla~-hps~~q~ 383 (626)
T KOG2106|consen 309 KIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN-GFTLTVQGHGDE--LWGLAT-HPSKNQL 383 (626)
T ss_pred eEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC-CceEEEEecccc--eeeEEc-CCChhhe
Confidence 99999943221 1111111000 000 112223456655 788886 8999999
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCC
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE 216 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (285)
++++.|+.+++|+ ..+++.+.. -..++.++.|+|.| .++.|...|...+.|.++..+.++... ...+.....+++
T Consensus 384 ~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred eeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 9999999999999 456665544 35789999999999 999999999999999988766555444 334455555777
Q ss_pred CceEEEeCCCCeEEEEEecccc
Q 023246 217 DHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 217 ~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
+.+++.++.|+.|++|.+....
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCC
Confidence 8899999999999999987653
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=1.5e-16 Score=124.88 Aligned_cols=233 Identities=13% Similarity=0.056 Sum_probs=159.1
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+.++|.++.|+|.+...+++.+.||+|++-|++....... ..+ ......+..+.|+.+...++. ..
T Consensus 233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v------------~s~-~~d~~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV------------LSL-DTDNIWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred CCccccceEecCCChhheeeeccCceeeeeeecchhhHHH------------hhc-CccceeeeeccccCCCccEEEeec
Confidence 3578999999999989999999999999999997642111 111 123445677888887765555 45
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc----eE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----LV 156 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~ 156 (285)
=|.+.+||.++.. .....+.-|... |.+++++.-...++++++.|++++|||++.-. ++
T Consensus 300 ~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 300 VGNFNVIDLRTDG---------------SEYENLRLHKKK--ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred ccceEEEEeecCC---------------ccchhhhhhhcc--cceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence 5699999999873 234455566654 99999833356788999999999999987522 23
Q ss_pred EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC----CCCCCCCCCCc----cc--ceeeccccCCCceEEEeCCC
Q 023246 157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTDFPPLPDNA----EK--IMKANKQGREDHSRITLTPD 226 (285)
Q Consensus 157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~s~d 226 (285)
.....|...|.+..|+|++-.|+|.+.|..|+|||.. ..+......|. .. .+...| .++..+++.+.--
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVVGRYP 441 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee-CCCccEEEEeccC
Confidence 3344699999999999998889999999999999974 21221111122 11 123333 3455678888888
Q ss_pred CeEEEEEecccccceeE------------eeecccc-ccCCCCCcCeEEEee
Q 023246 227 VIMHVLRLQRRQTLAYR------------ERRYNAA-DFESDEEEGETYLLG 265 (285)
Q Consensus 227 ~~i~vwd~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~v~~~~ 265 (285)
..|-|+|-..++.+..+ +..|-.. .++++...|.+|++-
T Consensus 442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 88999987666533221 2233222 345556667777654
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.9e-16 Score=122.75 Aligned_cols=231 Identities=11% Similarity=0.147 Sum_probs=162.3
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-CcceEEEEEecCCCEEEE-
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLIS- 78 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s- 78 (285)
+.+.||.+..|.|+|...+++++....+..||+.+.+..+. ... .++ ...+.....++++++|+.
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~------------~~~-~g~e~~~~e~FeVShd~~fia~~ 321 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL------------KPP-YGVEEKSMERFEVSHDSNFIAIA 321 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccc------------cCC-CCcccchhheeEecCCCCeEEEc
Confidence 35678999999998755999999999999999998874321 111 222 346778889999998888
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
|..|.|++....++ +.+..++-.. .+..++| +.+++.|++.+.+|.|++||++...+++.
T Consensus 322 G~~G~I~lLhakT~----------------eli~s~KieG---~v~~~~f-sSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTK----------------ELITSFKIEG---VVSDFTF-SSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred ccCceEEeehhhhh----------------hhhheeeecc---EEeeEEE-ecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 67999999999888 6777776433 2899997 88999999999999999999999999998
Q ss_pred Eecccccc--eEeEEcCCCCeEEEEecCCcEEEEcCCCCC-------CCCCCCCcccceeeccccCCCceEEEeCC----
Q 023246 159 MVGDRHVV--NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNAEKIMKANKQGREDHSRITLTP---- 225 (285)
Q Consensus 159 ~~~h~~~v--~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 225 (285)
+.. .+.| ++++.++++.+||+|+..|.|.|||.++.. +..+..-...+..+ ...++..+++.+|.
T Consensus 382 f~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 382 FVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRVKKN 459 (514)
T ss_pred Eee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhcccc
Confidence 874 3444 456777999999999999999999964321 12222111222111 11222233222222
Q ss_pred ---------CCeEEEEEeccc--ccceeEeeeccccccCCCCCcCeEEEeec
Q 023246 226 ---------DVIMHVLRLQRR--QTLAYRERRYNAADFESDEEEGETYLLGF 266 (285)
Q Consensus 226 ---------d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 266 (285)
-....-|-.... ..+..+.++|.+..++.+.+.|+|-++.+
T Consensus 460 alrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 460 ALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 122222443432 23344589999999999999988877643
No 171
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=127.47 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=115.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc--ccCCcCCCCCcccccc-----------cccCCCCCcceEEEE
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCP-----------RHLIGKNNIHITGLA 68 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~i~ 68 (285)
.+.+|+|+.|-|-+..+|+.+-.+|.+.+||..-.- ....+...+.-..|.+ .....--.+.|...+
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 457899999999777889999999999999863211 0000000000001100 000012245788999
Q ss_pred EecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEE
Q 023246 69 YSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 147 (285)
Q Consensus 69 ~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v 147 (285)
|+|||++||+ +.||.++|||..+. +++..++..-.. ..|++| +|||+||++|++|--|.|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEEE-cCCccEEEecCCcceEEE
Confidence 9999999999 67999999999876 566666555544 899995 999999999999999999
Q ss_pred EecCCCceEEEEecccccceEeEEcC
Q 023246 148 WKKKGGKLVRLMVGDRHVVNQLEPHP 173 (285)
Q Consensus 148 wd~~~~~~~~~~~~h~~~v~~~~~~p 173 (285)
|.+..++.+..-++|.+.|..|+|+|
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999997
No 172
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.3e-17 Score=125.45 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=137.9
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEE
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVY 85 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~ 85 (285)
.+++|+++| ..+++|+.||++|||+...... .... ..|...|.++.|+|||++|++ +.| ..+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t--------------~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLT--------------ILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchh--------------hhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence 578999986 8999999999999999776542 1222 678889999999999999999 567 999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-----cEEEEecCCCeEEEEecCCCce-----
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL----- 155 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~v~vwd~~~~~~----- 155 (285)
||+.+++ ..+..............+.| +.++ ..++.....+.|..|++.....
T Consensus 211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999988 34444442222223556666 6555 3334445566777776542211
Q ss_pred EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.++.......|.+++.+++|++++.|+.||.|-|++....+. +..+. |.. .+......++.+++++.+.+....+..
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEEE
Confidence 112222235799999999999999999999999999866543 33332 444 445545567888888888898888887
Q ss_pred ecc
Q 023246 234 LQR 236 (285)
Q Consensus 234 ~~~ 236 (285)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 765
No 173
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=5.9e-16 Score=114.66 Aligned_cols=154 Identities=12% Similarity=0.154 Sum_probs=109.4
Q ss_pred eEEEEcCCCCcEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246 7 NAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 77 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 77 (285)
..+.|+|+|..+++.... -+...||.++.... ....+.....++|.+++|+|+|+.|+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-------------~~~~i~l~~~~~I~~~~WsP~g~~fa 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-------------PVESIELKKEGPIHDVAWSPNGNEFA 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-------------ccceeeccCCCceEEEEECcCCCEEE
Confidence 358899987555555541 13466666643321 11112123345799999999998765
Q ss_pred E--ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---CCeEEEEecC
Q 023246 78 S--YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKK 151 (285)
Q Consensus 78 s--~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~vwd~~ 151 (285)
. |. +..|.+||++. +.+..+.. .. +..+.| +|+|+++++++. .|.|.+||.+
T Consensus 76 vi~g~~~~~v~lyd~~~-----------------~~i~~~~~--~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVKG-----------------KKIFSFGT--QP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEccCCcccEEEcCcc-----------------cEeEeecC--CC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECC
Confidence 4 43 78999999963 35555543 22 778885 999999999864 4679999999
Q ss_pred CCceEEEEecccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCC
Q 023246 152 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 197 (285)
Q Consensus 152 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 197 (285)
+.+.+.... | ..++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 888887765 3 35789999999999998874 77899999876654
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=116.46 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=124.2
Q ss_pred cceeEEEEcCCC--CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 4 IRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 4 ~~v~~~~~s~~~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+.++|..+.-+. ..++++|-.+|.|.+||+.++..+..+. + .+....-...|..+|.++.|.+....=++ +.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~---~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--Q---SSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--c---ccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 456676654322 2467788899999999999874321111 1 11222222578999999999876554444 44
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
+..+..|.++... ...+........... +..+.+ -||++.+++++-|+.|+||..++.+++..++
T Consensus 226 ~dkl~~~Sl~~s~------------gslq~~~e~~lknpG--v~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 226 DDKLVMYSLNHST------------GSLQIRKEITLKNPG--VSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred cccceeeeecccc------------CcccccceEEecCCC--ccceEE-ccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 7788899887541 111222222222222 788887 8999999999999999999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
.|...|++++|+|+...+|.++.|++|.+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=4.8e-15 Score=111.97 Aligned_cols=243 Identities=9% Similarity=0.142 Sum_probs=166.6
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-------cCCCEEEEe
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLISY 79 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-------~~~~~l~s~ 79 (285)
..+.|+||| ..|++-+.|..+++|++...-..... +.++..-....+.......|...+|- |+..+++++
T Consensus 53 kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~--~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 53 KGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKA--DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred ccceeCCCC-ceEEeecccCeeeEEecChhhcccCC--CCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 468899986 78889999999999998743211110 11111101111111224467777776 455677775
Q ss_pred -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc--cCc-eeeeeEEEecCCCcEEEEecCCCeEEEEec-CCCc
Q 023246 80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGK 154 (285)
Q Consensus 80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~-~~~~ 154 (285)
.+.-|++||.-++ +....++.. ... ....+++| +|+|.+|++|. ...|++||+ +.|.
T Consensus 130 sr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred cccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCCC
Confidence 5999999999988 455555432 222 11467887 99999998776 689999998 5554
Q ss_pred eEE---EE----ecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246 155 LVR---LM----VGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP 225 (285)
Q Consensus 155 ~~~---~~----~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 225 (285)
-.. ++ .+..+-+.+++|+|... .++.++.-..+-||.-..+. +..+.+|...+..+.|....++++.-+-.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 322 11 12357789999999766 68888888888888765554 56677888888888776666655555555
Q ss_pred CCeEEEEEecccc--------------cceeEeeeccccccCCCCCcCeEEEeecCC-CC
Q 023246 226 DVIMHVLRLQRRQ--------------TLAYRERRYNAADFESDEEEGETYLLGFSD-SD 270 (285)
Q Consensus 226 d~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 270 (285)
+..|..||++... +...+...+.+..|++++.+|.|-+++..+ |+
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 8999999998642 223345677788899999999999999877 55
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.6e-15 Score=115.15 Aligned_cols=157 Identities=16% Similarity=0.224 Sum_probs=124.8
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--C
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN--D 81 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~--d 81 (285)
+|.++.++.+ .|++.-. ..|.|||+++.+++..+... ..+...+.++++++.+.++|- ++ .
T Consensus 89 ~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~------------~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 89 SILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETT------------PPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhcc------------CCCccceEeeccCCCCceEEecCCCCC
Confidence 5677777773 3444433 45999999998865443211 234556777777777788887 43 8
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-EEEEecCCCceEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~ 160 (285)
|.|.+||..+- +.+..+..|... +-+++| +++|.+++++++.|+ |+|+.+.+|+.+.+|+
T Consensus 153 GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 153 GDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred ceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 99999999877 788889999977 999998 999999999999887 6799999999999997
Q ss_pred cc--cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 161 GD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 161 ~h--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
.- -..|.+++|+|++++|+..+..++|+++.+....
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 32 2468899999999999999999999999986543
No 177
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=1.1e-15 Score=125.83 Aligned_cols=202 Identities=14% Similarity=0.184 Sum_probs=144.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCC-----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 77 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 77 (285)
.-.|.+++.+|++ +++|+++... .|++|+..+-. ... .+.+|.-.|+.++|||+|++|+
T Consensus 525 GyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~--------------~~~-~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 525 GYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL--------------QVQ-ELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred ceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh--------------hhh-eecccceEEEEEEECCCCcEEE
Confidence 3479999999975 9999998754 48899987553 222 2378999999999999999988
Q ss_pred E-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--c
Q 023246 78 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--K 154 (285)
Q Consensus 78 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~ 154 (285)
+ +.|.++.+|....... ........+.|+.- |.++.| +|++.+++|++.|.+|++|..... +
T Consensus 589 svsRDRt~sl~~~~~~~~------------~e~~fa~~k~HtRI--IWdcsW-~pde~~FaTaSRDK~VkVW~~~~~~d~ 653 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIK------------DEFRFACLKAHTRI--IWDCSW-SPDEKYFATASRDKKVKVWEEPDLRDK 653 (764)
T ss_pred EeecCceEEeeeeecccc------------hhhhhccccccceE--EEEccc-CcccceeEEecCCceEEEEeccCchhh
Confidence 8 5699999999865410 00112224567644 899995 999999999999999999998876 4
Q ss_pred eEEE--EecccccceEeEEcCC----CC-eEEEEecCCcEEEEcCC-CCC------------CCCCCCCcccceeecccc
Q 023246 155 LVRL--MVGDRHVVNQLEPHPH----IP-MFATCGIEKTVKLWAPM-PTD------------FPPLPDNAEKIMKANKQG 214 (285)
Q Consensus 155 ~~~~--~~~h~~~v~~~~~~p~----~~-~l~t~~~d~~i~iwd~~-~~~------------~~~~~~~~~~~~~~~~~~ 214 (285)
.+.. ...+...|+++++.|- .. .++.|-..|.|.+|... ..+ ......+...+..+.|..
T Consensus 654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p 733 (764)
T KOG1063|consen 654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRP 733 (764)
T ss_pred hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecc
Confidence 4433 2357789999999873 22 46677788999999853 111 112233555666666653
Q ss_pred C---------CCceEEEeCCCCeEEEEEec
Q 023246 215 R---------EDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 215 ~---------~~~~~~~~s~d~~i~vwd~~ 235 (285)
. ....+..++.|-.++++++.
T Consensus 734 ~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 734 TCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccccccccceeEEeeecccceeEEeecc
Confidence 3 12256788889999998764
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.4e-15 Score=113.14 Aligned_cols=209 Identities=11% Similarity=0.145 Sum_probs=151.4
Q ss_pred ceeEEEEcCCC----CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe
Q 023246 5 RLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY 79 (285)
Q Consensus 5 ~v~~~~~s~~~----~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~ 79 (285)
+++.+-|.|+. +.+|||.+ ..+|+|.+...+.... ............+..++++..|+.-. +++.++
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~------~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE------LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee------hhhhhccCcccccCCcccccccccCCcceeEee
Confidence 67888999863 35777654 5899999874321000 00000111124567799999998855 566666
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEE
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
+ |.+..|||++++. .......+-.|..+ |..++| ... -+.|++.+.||.|++||++..+--.
T Consensus 170 SiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf-~~~s~~~FASvgaDGSvRmFDLR~leHST 233 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAF-LKGSRDVFASVGADGSVRMFDLRSLEHST 233 (364)
T ss_pred cccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEe-ccCccceEEEecCCCcEEEEEecccccce
Confidence 6 9999999998761 00234556678855 999998 553 4678999999999999998765433
Q ss_pred EE---ecccccceEeEEcCCCC-eEEEEecC-CcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246 158 LM---VGDRHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 230 (285)
Q Consensus 158 ~~---~~h~~~v~~~~~~p~~~-~l~t~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~ 230 (285)
.+ .....+...++|++... ++||-..| ..|.|.|++..+ +.++.+|...+..+.|.......+++++.|.+..
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 33 23245788899998655 47776655 479999998775 5789999999999999888888999999999999
Q ss_pred EEEeccc
Q 023246 231 VLRLQRR 237 (285)
Q Consensus 231 vwd~~~~ 237 (285)
+||+..-
T Consensus 314 iWDl~q~ 320 (364)
T KOG0290|consen 314 IWDLQQM 320 (364)
T ss_pred EEecccc
Confidence 9999864
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.7e-15 Score=113.22 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=113.6
Q ss_pred cceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCC-cceEEEEEecCCCEEEEec-
Q 023246 4 IRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 4 ~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~- 80 (285)
..++.++|... .+..+.+++.||+|++||+++..... ......|. .+..+++..-.++.+++|.
T Consensus 71 ~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 71 ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-------------RISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-------------heeccCCCCCcceEeeccCcCCeEEeccc
Confidence 34667777553 67899999999999999999775321 11113333 4566666666777888863
Q ss_pred ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-
Q 023246 81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK- 154 (285)
Q Consensus 81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~- 154 (285)
+..|.+||++... +.+. -...|.+. |++++|++.+.+.|++|+-||-|.+||+....
T Consensus 138 ~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred cccCceEEEEEEecccc---------------chhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 6789999998762 2233 34567777 99999966678899999999999999987432
Q ss_pred --eEEEEecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCC
Q 023246 155 --LVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 155 --~~~~~~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~ 194 (285)
.+...-.|...|..+.|...+ +.+.+-+...+..+|+++.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 122222366778888887765 2366677778888887653
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.6e-15 Score=120.92 Aligned_cols=188 Identities=20% Similarity=0.274 Sum_probs=134.8
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
++++|.|+++.+. ...+++|+.||+|+.|++.... - ..... ........+.||++.|+.+++|+....|+++ .
T Consensus 343 H~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~-d-p~ds~---dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 343 HEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQ-D-PDDSY---DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred ccCceEEEEecCC-ceEEEeeccCceeeeeccCCCC-C-ccccc---CcchhccceeccccceeeeeecccccceeeecC
Confidence 4689999999996 5999999999999999887322 0 00000 0113445557999999999999988888886 5
Q ss_pred CCcEEEEEcCCCCC-----CC----CCCCCC----------------ccccCCCC---ceEeec-----ccCceeeeeEE
Q 023246 81 DELVYLFEKNMGLG-----PS----PLSLSP----------------EDLQKREE---PQVYSG-----HRNSQTVKGVN 127 (285)
Q Consensus 81 d~~i~iwd~~~~~~-----~~----~~~~~~----------------~~~~~~~~---~~~~~~-----~~~~~~i~~~~ 127 (285)
||++++|....... +. +.++.. ..+..+.. ...+.. ......+..+.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 99999999875531 00 000000 00111111 111111 10001255555
Q ss_pred EecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 128 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 128 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.|...+.+++..|+.|+++|..++++++....|...++++++.|+|.+|++++.|+.+++|.+....
T Consensus 497 -s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 497 -SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred -ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 47888999999999999999999999999999999999999999999999999999999999986543
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2e-14 Score=108.27 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=117.8
Q ss_pred eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246 64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 142 (285)
Q Consensus 64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 142 (285)
..|+.|++.|.+||.| .+|.|.|||+.+. ...+.+.+|..+ |.+++| +++|++|++++.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------~iar~lsaH~~p--i~sl~W-S~dgr~LltsS~D 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------RIARMLSAHVRP--ITSLCW-SRDGRKLLTSSRD 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc----------------chhhhhhccccc--eeEEEe-cCCCCEeeeecCC
Confidence 7799999999999996 5999999999887 677888999976 999995 9999999999999
Q ss_pred CeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCccc----ceeeccccCCC
Q 023246 143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEK----IMKANKQGRED 217 (285)
Q Consensus 143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~ 217 (285)
..|.+||+..|.+++.+.- .++|..+.|+|.... ++.+-.+..-.+-++...+-.-++..... .-........+
T Consensus 87 ~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 9999999999999988874 679999999996554 33333444444444443321112111111 10101122346
Q ss_pred ceEEEeCCCCeEEEEEecccccceeE
Q 023246 218 HSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 218 ~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.++++|...|.+.++|..+.+.+..+
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~ 191 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASF 191 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeee
Confidence 69999999999999998876554433
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.66 E-value=7.1e-14 Score=116.51 Aligned_cols=200 Identities=20% Similarity=0.339 Sum_probs=148.5
Q ss_pred CccceeEEEEcCCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS- 78 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s- 78 (285)
+...|.+++|+|++ ..+++++. |+.+++|++..+. .. ....+|...|.+++|+|++. ++++
T Consensus 154 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 154 HSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK--------------PL-STLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred CcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc--------------eE-EeeccCCCceEEEEEcCCcceEEEEe
Confidence 34678899999986 68888875 9999999998743 12 22255899999999999998 6666
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-E
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-V 156 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~ 156 (285)
+.|+.|++||...+ .... .+..|.... +. .| ++++.++++++.|+.+++|++..... +
T Consensus 218 ~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 218 SSDGTIRLWDLSTG----------------KLLRSTLSGHSDSV-VS--SF-SPDGSLLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred cCCCcEEEEECCCC----------------cEEeeecCCCCcce-eE--eE-CCCCCEEEEecCCCcEEEeeecCCCcEE
Confidence 45999999988754 4445 577777542 22 55 88888899999999999999987665 5
Q ss_pred EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC--CCCcccceeeccccCC-CceEEEeCCCCeEEEE
Q 023246 157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL--PDNAEKIMKANKQGRE-DHSRITLTPDVIMHVL 232 (285)
Q Consensus 157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~d~~i~vw 232 (285)
..+..|...+.++.|+|++..+++++.|+.+++|+...... ... ..|...+..+.+ ... ......+..|+.+.+|
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEee
Confidence 55567889999999999888888888899999998876653 222 244444555544 322 2344444678999999
Q ss_pred Eecccc
Q 023246 233 RLQRRQ 238 (285)
Q Consensus 233 d~~~~~ 238 (285)
++....
T Consensus 357 ~~~~~~ 362 (466)
T COG2319 357 DLRTGK 362 (466)
T ss_pred ecCCCc
Confidence 988776
No 183
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=4.2e-15 Score=112.04 Aligned_cols=206 Identities=11% Similarity=0.166 Sum_probs=149.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
..+|+|.+|++|. ..+|++.....|.||.....+.. ...+.+..|...|+.|.|+|....|+++ .|
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4689999999986 89999999999999998866521 4445558899999999999999888886 49
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE----E
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV----R 157 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~ 157 (285)
..-++|....+ .+++..-.+..+... .+++.| +|.++.|++|+....|.||-++..+-- +
T Consensus 77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 99999998544 234455555556644 899995 999999999999999999987744321 1
Q ss_pred EEecccccceEeEEcCCCCeEEEEecCCcEEEEcC-----CCCCC--------------CCCCCCcccceeeccccCCCc
Q 023246 158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-----MPTDF--------------PPLPDNAEKIMKANKQGREDH 218 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~-----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 218 (285)
.-+.+++.|.+++|+|++-+|+.|+.|+..|++.. +...- .++....+.+....+ ++.+.
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f-s~sG~ 219 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF-SPSGN 219 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe-CCCCC
Confidence 22356788999999999999999999999999974 11110 011112223333322 23334
Q ss_pred eEEEeCCCCeEEEEEecccc
Q 023246 219 SRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 219 ~~~~~s~d~~i~vwd~~~~~ 238 (285)
.+.-.+.|+.+.+-|.....
T Consensus 220 ~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEecCCCceEEeecCCCc
Confidence 55556677788777766553
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=8.8e-14 Score=106.90 Aligned_cols=193 Identities=10% Similarity=0.172 Sum_probs=137.6
Q ss_pred eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~ 83 (285)
|--+-|+. .++|..+.+. .+++++++.+..+ |...+ ..+|.++.++.+ .|+..-...
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee~ 107 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNRK--RLVVCLEES 107 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEccc--eEEEEEccc
Confidence 33445555 3555555443 4888888766532 22222 446788888654 666665555
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEe--cCCCeEEEEecCCCceEEEEe
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~--~~dg~v~vwd~~~~~~~~~~~ 160 (285)
|+|||++.. +.++++... .++..+.++++ ++.+.+++-- ...|.|.+||+.+-+.+..+.
T Consensus 108 IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~ 170 (391)
T KOG2110|consen 108 IYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN 170 (391)
T ss_pred EEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEEE
Confidence 999999877 677777654 33334677765 6666688763 347899999999999999999
Q ss_pred cccccceEeEEcCCCCeEEEEecCCc-EEEEcCCCCC-CCCCCCC--cccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
+|.+.+.+++|+|+|.+|||++..|+ ||++.+..+. +.++... ...++.+. ..++..++.+.+..++|++|.+..
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999999999999999986 6999986654 5555432 23344443 355667888888899999999875
Q ss_pred c
Q 023246 237 R 237 (285)
Q Consensus 237 ~ 237 (285)
.
T Consensus 250 ~ 250 (391)
T KOG2110|consen 250 V 250 (391)
T ss_pred c
Confidence 4
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=107.16 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=140.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
.+.|+++.|..+ .+|.+|..-|.|++|++.+.+ ....+...|...|+.+.--|++.+..-+.|.
T Consensus 14 ~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r--------------~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~ 77 (323)
T KOG0322|consen 14 SSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTER--------------DLPLIRLFGRLFITNLQSIPNDSLDTQGRDP 77 (323)
T ss_pred cchheehhhccc--hhhhcccccceEEEEEeecCc--------------cchhhhhhccceeeceeecCCcchhhcCCCc
Confidence 356788888884 579999999999999999876 3333323677889999999986666668899
Q ss_pred cEEEEEcCCCCCCCCCCC----------C-------C----------------ccccCCCCceEeecccCc--eeeeeEE
Q 023246 83 LVYLFEKNMGLGPSPLSL----------S-------P----------------EDLQKREEPQVYSGHRNS--QTVKGVN 127 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~----------~-------~----------------~~~~~~~~~~~~~~~~~~--~~i~~~~ 127 (285)
.+.+|++....-....++ + . .+......+......... ..+.+..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 999999986330000000 0 0 000000000110000000 0144443
Q ss_pred EecCCC--cEEEEecCCCeEEEEecCCCceEEEE----------ecc---------------------------------
Q 023246 128 FFGPND--EYVMSGSDCGHLFIWKKKGGKLVRLM----------VGD--------------------------------- 162 (285)
Q Consensus 128 ~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~----------~~h--------------------------------- 162 (285)
+-...+ -++++|.++|.+.+||+.++..+-.+ ..|
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 211122 25677899999999999876221100 011
Q ss_pred -------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCe
Q 023246 163 -------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVI 228 (285)
Q Consensus 163 -------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 228 (285)
+..|..+.+.||++.+||++.|+.||+|.-++.. +..+..|...+..+.. .++..++++++.|..
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf-spd~~lmAaaskD~r 316 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF-SPDCELMAAASKDAR 316 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe-CCCCchhhhccCCce
Confidence 2356778888999999999999999999998876 4556668877766654 555678999999999
Q ss_pred EEEEEe
Q 023246 229 MHVLRL 234 (285)
Q Consensus 229 i~vwd~ 234 (285)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 186
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=5.9e-16 Score=121.96 Aligned_cols=209 Identities=15% Similarity=0.181 Sum_probs=168.5
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY 85 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~ 85 (285)
-..+.|+.+| ..++.|+..|.|-.+|..++++...+. -...|.++.|-.+.+++|.+....++
T Consensus 132 PY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------v~Etv~Dv~~LHneq~~AVAQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN----------------VMETVRDVTFLHNEQFFAVAQKKYVY 194 (545)
T ss_pred CeeeeecCCc-cEEEecCCccceeeeecccceeeeeee----------------hhhhhhhhhhhcchHHHHhhhhceEE
Confidence 3457888865 899999999999999999987542221 13467889999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccccc
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 165 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 165 (285)
|||-... .++-++.+.. +..+.| -|..-+|++++..|.+..-|+.+|+.+..+..-.+.
T Consensus 195 vYD~~Gt-----------------ElHClk~~~~---v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~ 253 (545)
T KOG1272|consen 195 VYDNNGT-----------------ELHCLKRHIR---VARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR 253 (545)
T ss_pred EecCCCc-----------------EEeehhhcCc---hhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCCc
Confidence 9997643 5555555433 888998 788889999999999999999999999999877889
Q ss_pred ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246 166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
+..++-+|-+..+-+|...|+|.+|.+.... +..+..|..++..+.. ...++++++.+.|..++|||++...++....
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv-~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV-DRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE-CCCCcEEeecccccceeEeeeccccccceee
Confidence 9999999998899999999999999998776 4566667777755543 5677899999999999999999988776664
Q ss_pred eeccccccC
Q 023246 245 RRYNAADFE 253 (285)
Q Consensus 245 ~~~~~~~~~ 253 (285)
.......+.
T Consensus 333 tp~~a~~ls 341 (545)
T KOG1272|consen 333 TPHPASNLS 341 (545)
T ss_pred cCCCccccc
Confidence 433333333
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=3.8e-15 Score=115.52 Aligned_cols=172 Identities=18% Similarity=0.266 Sum_probs=130.6
Q ss_pred CcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246 61 NIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 61 ~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 138 (285)
..+|..+.|.++.. .|+++ .|..|++|-+........ ..+.+....+..|... |+.+.| +|+|..+++
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLAS 82 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLAS 82 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeeee
Confidence 45789999999876 88885 699999999987631100 0122345667788866 999997 999999999
Q ss_pred ecCCCeEEEEecC--------C--------CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCC
Q 023246 139 GSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP 201 (285)
Q Consensus 139 ~~~dg~v~vwd~~--------~--------~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~ 201 (285)
|+++|.|.+|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..+.+. .+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 9999999999765 2 1123456689999999999999999999999999999999988864 444
Q ss_pred CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.|...+.-.+| .+.+.++++-+.|...+.+.+...+.+...
T Consensus 163 dh~~yvqgvaw-Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 163 DHEHYVQGVAW-DPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred ccccccceeec-chhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 55555544443 555668888888887788877766555444
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=116.84 Aligned_cols=206 Identities=9% Similarity=0.105 Sum_probs=149.9
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP 95 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~ 95 (285)
..|+.++.||.+.|.+-. ++ +......|.+.+.+-.|+|+|.-|++ |.||.|++|.-...
T Consensus 76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--- 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--- 136 (737)
T ss_pred ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---
Confidence 578889999999888754 32 22223789999999999999986666 78999999997543
Q ss_pred CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC
Q 023246 96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 175 (285)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 175 (285)
...++.... ..|+|++| .|+.+.++-+.. +.+.+=-+.....+-.+++|.+-|.++.|+|..
T Consensus 137 --------------LRStl~Q~~--~~v~c~~W-~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 137 --------------LRSTVVQNE--ESIRCARW-APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred --------------HHHHHhhcC--ceeEEEEE-CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence 333343334 34999996 888776655443 455555566556666789999999999999999
Q ss_pred CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc--ceeEeeeccccccC
Q 023246 176 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT--LAYRERRYNAADFE 253 (285)
Q Consensus 176 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~ 253 (285)
..+++|++|-..++||..+..+..-..|.-++.++.|... ..++.+| -.+++ +.+.+. +.-+.+++++..++
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd--~~~~v~S-~nt~R---~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE--KDYLLWS-YNTAR---FSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred cceeecCCceeEEeecccCcccccCChhccceeeeeeccc--cceeeee-eeeee---ecCCCccceEEEEEcCCCceee
Confidence 9999999999999999988887777667777777766433 3333333 23333 333332 33458899999999
Q ss_pred CCCCcCeEEEee
Q 023246 254 SDEEEGETYLLG 265 (285)
Q Consensus 254 ~~~~~~~v~~~~ 265 (285)
++...|.+++.-
T Consensus 273 ~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 273 CGTSTGQLIVAY 284 (737)
T ss_pred ccccCceEEEee
Confidence 998888776654
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=5e-14 Score=116.19 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=153.6
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
..|..++|-|||..+++++ +..+.+||...|.. ...+ ++|.+.|.+++|+.+|+.+++| .|+
T Consensus 13 hci~d~afkPDGsqL~lAA--g~rlliyD~ndG~l--------------lqtL-KgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA--GSRLLVYDTSDGTL--------------LQPL-KGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred cchheeEECCCCceEEEec--CCEEEEEeCCCccc--------------cccc-ccccceEEEEEEccCCceeccCCCce
Confidence 3688999999986665554 45799999998863 2333 8999999999999999999996 599
Q ss_pred cEEEEEcCCCC---------------CCCCCCCC---CccccCCC-CceEeecccCceeeeeEEEecCCCcEEEEecCCC
Q 023246 83 LVYLFEKNMGL---------------GPSPLSLS---PEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 143 (285)
Q Consensus 83 ~i~iwd~~~~~---------------~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 143 (285)
.|.+|+.+-.. .|....+. ..+..-|. ..+....++....+.+++| ..+|++++.|-.+|
T Consensus 76 ~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsW-tnDGqylalG~~nG 154 (1081)
T KOG1538|consen 76 SVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSW-TNDGQYLALGMFNG 154 (1081)
T ss_pred eEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeee-cCCCcEEEEeccCc
Confidence 99999875331 00000000 00000000 0011122444445788885 99999999999999
Q ss_pred eEEEEecCCCceEEEEe---cccccceEeEEcCCC-----CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccC
Q 023246 144 HLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR 215 (285)
Q Consensus 144 ~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 215 (285)
+|.+-+.. ++..-.+. +.+++|.+++|+|.. ..++......++.++.+.+..+-.-....-...++.. ..
T Consensus 155 TIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY-f~ 232 (1081)
T KOG1538|consen 155 TISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY-FT 232 (1081)
T ss_pred eEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee-cc
Confidence 99998754 44333333 467899999999963 3577888888999999877654322111222223332 44
Q ss_pred CCceEEEeCCCCeEEEEEeccccc------ce---eEeeeccccccCCCCCcCeEEE
Q 023246 216 EDHSRITLTPDVIMHVLRLQRRQT------LA---YRERRYNAADFESDEEEGETYL 263 (285)
Q Consensus 216 ~~~~~~~~s~d~~i~vwd~~~~~~------~~---~~~~~~~~~~~~~~~~~~~v~~ 263 (285)
++.+++.|+.|+.+++|-...-.. -. .....|+.+..+.+..+|.+..
T Consensus 233 NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 667899999999999996432111 11 1134555555555555555543
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.9e-15 Score=119.86 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=123.8
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEEe-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISY- 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~- 79 (285)
.+-|+|+.|+.+| .+|++|+.|-.+.|||....+ ....+-.+|...|.++.|-|.. +++++|
T Consensus 50 ~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 50 TGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred cceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 4679999999986 999999999999999998766 3444447999999999999965 477776
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceE--
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLV-- 156 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~-- 156 (285)
.|..|++||+....+.. .+-........+..|... |..++- .|++ ..+.++++||+++-+|++.....
T Consensus 115 gDk~i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGG------MDHGMEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CcceEEEEecccccccc------cccCccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCccCCc
Confidence 59999999998531000 000011344556778866 888885 7777 78899999999999999863211
Q ss_pred --------EEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCC
Q 023246 157 --------RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM 193 (285)
Q Consensus 157 --------~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~ 193 (285)
..+....-...++.++|...+ |+.|+.|-..++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111112234678899997765 9999999999999953
No 191
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.4e-14 Score=114.38 Aligned_cols=239 Identities=15% Similarity=0.175 Sum_probs=165.7
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccc--------------ccc-----CCCC-----C
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--------------RHL-----IGKN-----N 61 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--------------~~~-----~~~h-----~ 61 (285)
-+.|..+|||..++|+|.+.-.|++||+....+-.....+..+..|.+ ..+ ...| .
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Confidence 467899999988999999999999999975433211111111111110 000 0001 1
Q ss_pred cceEEEEEec-CCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246 62 IHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 140 (285)
Q Consensus 62 ~~v~~i~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 140 (285)
..-..++++. ...+++.|+...|+-+++..+ ..+..|...... ++++.. ++...+|++|+
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----------------rfL~P~~~~~~~--lN~v~i-n~~hgLla~Gt 194 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----------------RFLNPFETDSGE--LNVVSI-NEEHGLLACGT 194 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEcccc----------------cccccccccccc--ceeeee-cCccceEEecc
Confidence 1223444443 334677777888888899887 566667666555 889987 88889999999
Q ss_pred CCCeEEEEecCCCceEEEEec------ccc-----cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCC--cccc
Q 023246 141 DCGHLFIWKKKGGKLVRLMVG------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKI 207 (285)
Q Consensus 141 ~dg~v~vwd~~~~~~~~~~~~------h~~-----~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~ 207 (285)
.+|.|-.||.++...+.++.. |.+ .|+++.|+.+|-.++.|..+|.+.|||++..+......| .-++
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999998877666542 333 499999999998899999999999999998876544444 4456
Q ss_pred eeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEE
Q 023246 208 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYL 263 (285)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (285)
..+.|...+....+.......++|||-..++....++...+..++-.-++.|-+|+
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEE
Confidence 67766555444455556678899999999998888877776665555455544443
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=116.95 Aligned_cols=179 Identities=11% Similarity=0.151 Sum_probs=133.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
.+.|.+-.|+|+| .-|++++.||.|++|.-. |- .+..+.....+|+|++|.|+...++-+..+
T Consensus 104 ~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GM---------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 104 AAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GM---------------LRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred hhhhhhcccCCCC-ceeeeecCCceEEEEecc-ch---------------HHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 4567788999986 889999999999999854 31 111223446689999999999888878778
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
.+.|=.+... ..+-..+.|.+- |.++.| ++..+.+++|++|-..++||.. |+.+..-..|
T Consensus 167 h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ 226 (737)
T KOG1524|consen 167 HISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE 226 (737)
T ss_pred eEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccCChh
Confidence 8888777655 456677889876 999995 9999999999999999999987 8888888889
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
..+|++++|.|+ +.++.++. .++|+=.++.+ .++.+.| +.++..+..|+..|.+.+
T Consensus 227 ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~G----------SifnlsW-S~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSY-NTARFSSPRVG----------SIFNLSW-SADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccc-cceeeeee-eeeeecCCCcc----------ceEEEEE-cCCCceeeccccCceEEE
Confidence 999999999999 56666664 46664333333 3444444 444444555555555444
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=2.6e-13 Score=113.08 Aligned_cols=201 Identities=19% Similarity=0.362 Sum_probs=153.2
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCC-CCcceEEEEE-ecCCC-EEEE-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAY-SNTSE-LLIS- 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~-s~~~~-~l~s- 78 (285)
...|.++.+.+.+ ..++.++.|+.+.+|+...+.. ....+ .. +...+..+.+ ++++. +++.
T Consensus 65 ~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 65 EDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK-------------LIKSL-EGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred cceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce-------------eEEEE-eccCCCceeeEEEECCCcceEEecc
Confidence 4578889999975 7888888999999999987640 11111 22 2236667777 77777 5554
Q ss_pred ec-CCcEEEEEcCC-CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCCCce
Q 023246 79 YN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKL 155 (285)
Q Consensus 79 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~ 155 (285)
+. |+.+.+|+... . .....+..|... +..++| +++++++++++. ++.+++|++..+..
T Consensus 130 ~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 130 SSLDGTVKLWDLSTPG----------------KLIRTLEGHSES--VTSLAF-SPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred CCCCccEEEEEecCCC----------------eEEEEEecCccc--EEEEEE-CCCCCEEEecCCCCCceEEEEcCCCce
Confidence 44 89999999986 3 466778888866 889997 999998888885 99999999998889
Q ss_pred EEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC-C-CCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246 156 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 232 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw 232 (285)
+..+..|...|.+++|+|++. .+++++.|+.|++||...+.. . .+..|.... .. ........+++++.|+.+++|
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-SFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-eECCCCCEEEEecCCCcEEEe
Confidence 999999999999999999998 566668999999998875543 3 355555543 11 233344577799999999999
Q ss_pred Eeccccc
Q 023246 233 RLQRRQT 239 (285)
Q Consensus 233 d~~~~~~ 239 (285)
++.....
T Consensus 269 ~~~~~~~ 275 (466)
T COG2319 269 DLRSSSS 275 (466)
T ss_pred eecCCCc
Confidence 9986654
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.2e-13 Score=103.09 Aligned_cols=210 Identities=15% Similarity=0.192 Sum_probs=140.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~d~ 82 (285)
..+..++|++. -.-+|++..|.+|++|+-.. + ++..+.......|++++|-|.+. .|+.+.-+
T Consensus 99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t--------------~pt~Lks~sQrnvtclawRPlsaselavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-T--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA 162 (445)
T ss_pred cceeeEeechh-hhhhhhhccCcEEEEeccCC-C--------------CCceecchhhcceeEEEeccCCcceeeeeecc
Confidence 35677999994 47899999999999999876 2 33333344566899999999764 67777777
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCCCceEEEEec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~ 161 (285)
-|++|........ -...........+.++... ...|+++.| .++|..+++++. |..|.+||..++..+.....
T Consensus 163 gIciW~~s~tln~----~r~~~~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 163 GICIWSDSRTLNA----NRNIRMMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred eeEEEEcCccccc----ccccccccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence 8999988644100 0000011112233333222 245999996 999999998775 77899999999887765544
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
..+.+.-+.|+||+.+|+.+.-|+..++|...... .....-..+.+....|..-...++++.+....++-..+.
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 45789999999999999999999999999654432 222221223444444433344566666666655555443
No 195
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=5.5e-14 Score=108.70 Aligned_cols=169 Identities=17% Similarity=0.340 Sum_probs=130.7
Q ss_pred ceeEEEEcCCCCcEEEEeeCC--CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEec
Q 023246 5 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYN 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~ 80 (285)
++..+.-+|..+.++|+|+.. ..++|||+...+.+ +......... +--.-.-.++++.|-+. ...|+++.
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~----L~LrVPvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDR----LGLRVPVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCcc----ccceeeeeeccceecCCCCCceEEEEe
Confidence 445566677777899999999 89999999877432 2111110000 00011235678999887 66788865
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL- 158 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~- 158 (285)
-+++++||.+.+. +++..|.-..++ +.++.- .|.++++++|..-|.+..||++.++.+..
T Consensus 224 ~~hqvR~YDt~~qR---------------RPV~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR---------------RPVAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cceeEEEecCcccC---------------cceeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeeccc
Confidence 8999999998764 566666666655 899985 89999999999999999999999988766
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
+.+-.+.|.++..+|.++++++||.|..+||+|+.+.++
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 788889999999999999999999999999999988553
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.3e-13 Score=115.36 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=120.1
Q ss_pred cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
..+.+.+|+|++ ..|+..+.+ ..|++||+.+++.. ..... .+| ...++|+|+|+.|+.+
T Consensus 204 ~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~------------~l~~~-~g~---~~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 204 QPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK------------VVASF-RGH---NGAPAFSPDGSRLAFAS 266 (429)
T ss_pred CccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE------------EEecC-CCc---cCceeECCCCCEEEEEE
Confidence 468899999986 677766543 36999999877521 11111 233 3368999999977763
Q ss_pred -cCCcEEEE--EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCC-c
Q 023246 80 -NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGG-K 154 (285)
Q Consensus 80 -~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~-~ 154 (285)
.++.+.|| |+.++ ....+..+... +....| +|+++.++..+ .+|...+|++... .
T Consensus 267 ~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 267 SKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NTEPSW-SPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred ecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cCCEEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 37765555 55443 33445544443 677886 99999776554 5777788876432 2
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
....+ .+.. ....|+|++++++..+.++ +.+||+.++....+.... ...... +.+++++++.++.++...+|.+
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~~~~~~-~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-LDESPS-ISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-CCCCce-ECCCCCEEEEEEcCCCceEEEE
Confidence 22223 3433 4678999999988887765 556998877643322111 111122 3556778888888888888876
Q ss_pred c
Q 023246 235 Q 235 (285)
Q Consensus 235 ~ 235 (285)
.
T Consensus 401 ~ 401 (429)
T PRK01742 401 V 401 (429)
T ss_pred E
Confidence 4
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=114.36 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=123.0
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEecCCcEEEEEcCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLG 94 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~ 94 (285)
--+..|-..|.|.+.|....+..+.+..+. .-....|+++.|-|.+. +|++-.+|.+++||.....+
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r-----------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEER-----------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcc-----------cccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 567778888999998877533221111111 11236899999999664 44445699999998854432
Q ss_pred CCCCCCCCcc------------ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246 95 PSPLSLSPED------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 162 (285)
Q Consensus 95 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 162 (285)
........-. .....++..+.-... .|..++| +|+|++|++.++||.++|||..+-+++..++..
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY 331 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY 331 (636)
T ss_pred CCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHHHHHhh
Confidence 2211111110 001112222222222 3888998 999999999999999999999988888888877
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCccccee
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK 209 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~ 209 (285)
-+...|++|+|||+++++|++|..|.+|.+..+++ ..-.+|..++..
T Consensus 332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 78999999999999999999999999999977764 444556655543
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.9e-14 Score=109.83 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=130.4
Q ss_pred cccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE
Q 023246 50 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 128 (285)
Q Consensus 50 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 128 (285)
.+|.+.+ .+|.+.|.++.|+.++++|++| .|..+++|++...- -.+..+++... +|.....|.+++|
T Consensus 46 ~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------~~k~~KPI~~~-~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 46 PFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------VRKTPKPIGVM-EHPHRSNIFSLEF 113 (609)
T ss_pred chhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------hhcCCCCceec-cCccccceEEEEE
Confidence 3455555 6899999999999999999996 58999999986430 00111333333 3333344999998
Q ss_pred ecCCCcEEEEecCCCeEEEEecCCCceEEEEec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC--CC-C
Q 023246 129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP--LP-D 202 (285)
Q Consensus 129 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~--~~-~ 202 (285)
+...+++++|..+++|.+-|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+... ... +. .
T Consensus 114 -~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 -DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred -ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 88899999999999999999999998887752 33689999999999999999999999999997654 111 11 2
Q ss_pred CcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246 203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~ 238 (285)
................++++.+..+-+-+||++..+
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 223333343333456688888999999999988654
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-13 Score=120.54 Aligned_cols=229 Identities=12% Similarity=0.135 Sum_probs=144.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
+..|..++.++....+|++|+.||+|++|+.+.-... ...+.....+..-..++.++...+.++.+|.+ .|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 4566788888866689999999999999998754311 00001111112235678899999999888875 59
Q ss_pred CcEEEEEcCCCCC--CCCC-----------------------------------CCCCccccCCCCceEeecccCceeee
Q 023246 82 ELVYLFEKNMGLG--PSPL-----------------------------------SLSPEDLQKREEPQVYSGHRNSQTVK 124 (285)
Q Consensus 82 ~~i~iwd~~~~~~--~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 124 (285)
|.|++.++..... .... .+..++.+....+.+++.......|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 9999999976320 0000 00011111111122222211112389
Q ss_pred eEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe-cccccceEeEEcCCCC---eEEEEe--cCCcEEEEcCCCCCCC
Q 023246 125 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---MFATCG--IEKTVKLWAPMPTDFP 198 (285)
Q Consensus 125 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~---~l~t~~--~d~~i~iwd~~~~~~~ 198 (285)
+++. +|.++.+++|+..|.+.+||++-+.++..+. .+..++..+..+|..+ ..++++ ..+.|.+|++.++..+
T Consensus 1200 Si~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1200 SIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred EEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 9997 9999999999999999999999888887765 4557888888887554 444443 4678999998766321
Q ss_pred C-CCCC-cccc---------------eeec--cccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 199 P-LPDN-AEKI---------------MKAN--KQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 199 ~-~~~~-~~~~---------------~~~~--~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
+ +... ..+. .... .....+..+++++.|..|+.||......-
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 1 1100 0000 0000 01113458899999999999998876544
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=4.6e-12 Score=102.79 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=122.1
Q ss_pred ceeEEEEcCCCCcEEEEe-eCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246 5 RLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg-~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-- 80 (285)
....++++|++ ++|+++ ..++.|.+|++.. +++. ..... ...+....++|+|++++|+++.
T Consensus 36 ~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 36 QVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT------------FAAES--PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE------------Eeeee--cCCCCceEEEECCCCCEEEEEEcC
Confidence 45678999986 565554 5689999999973 3210 00000 1123456899999999777753
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCceEE--
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVR-- 157 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~~-- 157 (285)
++.|.+|++...... .+.+..+.+.. ....+++ +|+++++++ ...++.|.+||+.+...+.
T Consensus 101 ~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 101 ANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSANI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CCeEEEEEECCCCCC------------CCceeeccCCC---cccEeEe-CCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 899999999643100 01112222221 2566776 999988854 5567999999997633221
Q ss_pred -----EEecccccceEeEEcCCCCeEEEEec-CCcEEEEcCCC--CCC---CCCC---CC---cccceeeccccCCCceE
Q 023246 158 -----LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDF---PPLP---DN---AEKIMKANKQGREDHSR 220 (285)
Q Consensus 158 -----~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~---~~~~---~~---~~~~~~~~~~~~~~~~~ 220 (285)
... .......++|+|++++++++.. +++|.+|+++. +.+ ..+. .. ......+ ...++++++
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i-~~~pdg~~l 242 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI-HITPDGRHL 242 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE-EECCCCCEE
Confidence 111 1345678999999999877765 89999999863 221 1111 10 0011111 123455556
Q ss_pred EEe-CCCCeEEEEEecccc
Q 023246 221 ITL-TPDVIMHVLRLQRRQ 238 (285)
Q Consensus 221 ~~~-s~d~~i~vwd~~~~~ 238 (285)
+++ ..++.|.+|++....
T Consensus 243 yv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 243 YACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEecCCCCeEEEEEEeCCC
Confidence 555 447899999996543
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=8.5e-14 Score=119.68 Aligned_cols=189 Identities=16% Similarity=0.138 Sum_probs=145.9
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGP 95 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~ 95 (285)
..++.++.++.+-+||...+.....+..+.-. --....-+.++++.-++++|+ -+.|.+|.....
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-----------~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d--- 165 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-----------TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED--- 165 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceE-----------EEEeEEEEeccCcEEEEEeccccccEEEEecccc---
Confidence 68888999999999999866533222111100 001222334555556888876 899999999844
Q ss_pred CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-EEecccccceEeEEcCC
Q 023246 96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPH 174 (285)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~ 174 (285)
+....+.+|.+. |..+.+ +.+|+++++.++|..+++|++++.+... +.-+|...|..+.|.|+
T Consensus 166 -------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 166 -------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred -------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence 233368899987 999997 9999999999999999999999988776 67789999999999998
Q ss_pred CCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 175 IPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 175 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
.++|++.|.+.++|+.+...+..+.+|...-+............+++..|+.+++|++...
T Consensus 230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 8999999999999988777776777777665555445556668999999999999998654
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.1e-13 Score=114.57 Aligned_cols=213 Identities=9% Similarity=0.095 Sum_probs=136.3
Q ss_pred cceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccc-ccccCCCCCcceEEEEEecCC-CEEEEec
Q 023246 4 IRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC-PRHLIGKNNIHITGLAYSNTS-ELLISYN 80 (285)
Q Consensus 4 ~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~i~~s~~~-~~l~s~~ 80 (285)
..|+.+.+ +.++..++++|+.||.||||+-..... +..+.+..+. ......+-.+.-.-+.|..+. .++++|.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC
Confidence 46777776 445557999999999999998543211 1111222221 111111222222345676654 4555577
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEE
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVR 157 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~ 157 (285)
-..|+|||.... .....+....+ ..++++.-....|+.+++|..||.|++||.+... .+.
T Consensus 1186 ~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeEEEEEecccc----------------eeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 889999999876 34444443222 2377776534568999999999999999987543 466
Q ss_pred EEeccccc--ceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCC---CCc--ccceeeccccCCCceEEEeCCCCeE
Q 023246 158 LMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP---DNA--EKIMKANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 158 ~~~~h~~~--v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~s~d~~i 229 (285)
..+.|+.. |..+.+-+.|-. |++|+.||.|++||++.....++. .|- +..............+++|+. +.|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 67788876 999999987766 999999999999999884322211 111 111222222334557888888 999
Q ss_pred EEEEecccc
Q 023246 230 HVLRLQRRQ 238 (285)
Q Consensus 230 ~vwd~~~~~ 238 (285)
+||++...+
T Consensus 1328 kIy~~~G~~ 1336 (1387)
T KOG1517|consen 1328 KIYSLSGEQ 1336 (1387)
T ss_pred EEEecChhh
Confidence 999987653
No 203
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.7e-14 Score=116.10 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=122.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~ 80 (285)
+++-|.++.|+|.. .+|++++. ..|+|||+...++. +.+ ......|..++.+|.|..|+.+ .
T Consensus 565 skG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelv--------------KkL-~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELV--------------KKL-LTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred cCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHH--------------HHH-hcCCeeeeeeeecCCCCeEEEecC
Confidence 46789999999975 56666654 78999999876632 222 2234578999999999766665 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC------CC-
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG- 153 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~------~~- 153 (285)
|+.++.||+.-.. +..+++..|... +++++| ++.-.++++|+.||++.|+.-. ..
T Consensus 628 d~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp 689 (733)
T KOG0650|consen 628 DKKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNP 689 (733)
T ss_pred CCeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence 9999999998653 577888888876 999998 8899999999999999988521 11
Q ss_pred --ceEEEEeccccc----ceEeEEcCCCCeEEEEecCCcEEEE
Q 023246 154 --KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLW 190 (285)
Q Consensus 154 --~~~~~~~~h~~~----v~~~~~~p~~~~l~t~~~d~~i~iw 190 (285)
-++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 245677788755 8888999999999999999999998
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1e-14 Score=117.51 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=123.7
Q ss_pred cccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEe
Q 023246 52 CPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFF 129 (285)
Q Consensus 52 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 129 (285)
.....+.+|++-|+++.|+.+|.+|++|+ |-.+.|||.-.. +.++.+ .+|... |.++.|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFv 102 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFV 102 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeee
Confidence 33444589999999999999999999986 888999999765 555555 478766 9999984
Q ss_pred cC-CCcEEEEecCCCeEEEEecCC----------CceEEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC
Q 023246 130 GP-NDEYVMSGSDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 130 ~~-~~~~l~~~~~dg~v~vwd~~~----------~~~~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~ 197 (285)
.. +.+.+++|..|..|+++|+.. .+..+.+..|...|..++-.|++. .+.++++||+|+-+|++....
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 32 567889999999999999874 234556667999999999999994 599999999999999986421
Q ss_pred --CC------CCCCc---ccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 198 --PP------LPDNA---EKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 198 --~~------~~~~~---~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
.. +.... -...++........+++.|+.|-..++||.+
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 11 11111 1122222233345688899999999999943
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=4.5e-15 Score=124.84 Aligned_cols=113 Identities=15% Similarity=0.305 Sum_probs=104.8
Q ss_pred CCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 58 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
.+|...|.|+.|...|+++++|+ |..++||...+. .++...++|... |+.++. +.+..++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----------------~~lAs~rGhs~d--itdlav-s~~n~~i 247 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----------------RCLASCRGHSGD--ITDLAV-SSNNTMI 247 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccch----------------hhhccCCCCccc--cchhcc-chhhhhh
Confidence 58999999999999999999975 899999999888 788999999987 999996 8888899
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
++++.|..|++|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 999999999999999999999999999999999999964 77889999999987
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.3e-12 Score=95.25 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=126.6
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCCCEEEEecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~~~l~s~~d~ 82 (285)
-.|+++...|.. +-+++++.|+.++-||+++|+ ....+++|++.|.++.- +..++.|..+.||
T Consensus 115 PeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~---------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 115 PEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGR---------------IQREYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred CccceeEeccCC-CcEEEecCCeEEEEEEecCCE---------------EEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence 468999999975 555555589999999999996 33334899999999988 4455566556799
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc--------eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 154 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 154 (285)
++++||.++. +.++.+.....+ ..|.+++ .+...+++|+ ...+.+|.++..+
T Consensus 179 tvRvWd~kt~----------------k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 179 TVRVWDTKTQ----------------KHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred cEEEEecccc----------------ceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCC
Confidence 9999999988 555555432221 2345554 3556777665 5779999999988
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 232 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw 232 (285)
+...+.- ...|..+.|.. ..+++++.-..|.-|.+.+.-....+......+...+....-..+-.++....+.++
T Consensus 239 ~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 239 STCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 8777763 45677778854 467788877889999886643333333333333333332233334444445555555
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.8e-12 Score=105.81 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=119.0
Q ss_pred cceeEEEEcCCCCcEEEEee---CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 4 IRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
..+.+.+|+||+ ..|+..+ .+..+.+|++.+++.. .. ....+.+..+.|+|+|+.|+..
T Consensus 199 ~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~------------~l----~~~~~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 199 QPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR------------QV----ASFPRHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred CceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Ec----cCCCCCcCCeEECCCCCEEEEEE
Confidence 367889999987 5665543 2457899999877521 11 1112234468999999977653
Q ss_pred c-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC-C--eEEEEecCCC
Q 023246 80 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGG 153 (285)
Q Consensus 80 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~vwd~~~~ 153 (285)
. ++ .|++||+.++ ....+..+... +....| +|+++.|+..+.+ + .|+++|+.++
T Consensus 262 ~~~g~~~I~~~d~~tg-----------------~~~~lt~~~~~--~~~~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 262 SKTGSLNLYVMDLASG-----------------QIRQVTDGRSN--NTEPTW-FPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred cCCCCcEEEEEECCCC-----------------CEEEccCCCCC--cCceEE-CCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 2 44 5889999775 23333333322 667785 9999988776654 3 5666677766
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCe--
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI-- 228 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-- 228 (285)
+. ..+..+........|+|+|++++..+.+ ..|.+||+.++....+.... ...... ++++++.++..+.++.
T Consensus 322 ~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~-~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 322 AP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETPS-IAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred Ce-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCce-ECCCCCEEEEEEcCCCce
Confidence 54 3344344456678999999998776543 35888999877654443211 111222 3456666666665543
Q ss_pred -EEEEEecc
Q 023246 229 -MHVLRLQR 236 (285)
Q Consensus 229 -i~vwd~~~ 236 (285)
+.++++..
T Consensus 399 ~l~~~~~~G 407 (429)
T PRK03629 399 VLNLVSTDG 407 (429)
T ss_pred EEEEEECCC
Confidence 56666543
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.1e-12 Score=96.73 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=130.5
Q ss_pred CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccc
Q 023246 26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL 105 (285)
Q Consensus 26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 105 (285)
+.|.|||=...+ +..++ ....+|.++.++++ .++....+.|+||......
T Consensus 75 NkviIWDD~k~~--------------~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~------------ 124 (346)
T KOG2111|consen 75 NKVIIWDDLKER--------------CIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP------------ 124 (346)
T ss_pred ceEEEEecccCc--------------EEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCCh------------
Confidence 579999944333 22221 33568999999876 7888889999999997542
Q ss_pred cCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCce--EEEEecccccceEeEEcCCCCeEEEEe
Q 023246 106 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~ 182 (285)
+.++.+....+++.+.+++ ...+..+|+. |-.-|.|.+-|+...+. ...+.+|.+.|.+++.+.+|.++||+|
T Consensus 125 ---k~l~~~et~~NPkGlC~~~-~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 125 ---KLLHVIETRSNPKGLCSLC-PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred ---hheeeeecccCCCceEeec-CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence 5667777666665566665 2444455554 66789999999876554 467889999999999999999999999
Q ss_pred cCCc-EEEEcCCCCC-CCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 183 IEKT-VKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 183 ~d~~-i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
..|+ |||||...+. +.++.. ....+++++. +++..+++..|..|+++||.++..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEEEeecC
Confidence 9996 7999998776 455442 2344555544 667778888898999999999864
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=113.75 Aligned_cols=215 Identities=11% Similarity=0.091 Sum_probs=142.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCC-------CCCcc---------ccc-----cccc-CCC
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPVD---------TFC-----PRHL-IGK 59 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-------~~~~~---------~~~-----~~~~-~~~ 59 (285)
++.-|.|++|+.+| .+||+|+.|+.|.+|+..-...++.... ..|+. .|. .+.+ ...
T Consensus 52 HKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k 130 (1081)
T KOG1538|consen 52 HKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK 130 (1081)
T ss_pred ccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh
Confidence 46689999999986 9999999999999998763222211110 01110 000 0011 012
Q ss_pred CCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-----
Q 023246 60 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND----- 133 (285)
Q Consensus 60 h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----- 133 (285)
....+.+++|..||++|+-|- +|+|.+-+.... +....-+......+|.+++| +|+.
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE----------------ek~~I~Rpgg~Nspiwsi~~-~p~sg~G~~ 193 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE----------------EKVKIERPGGSNSPIWSICW-NPSSGEGRN 193 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEeecCCCC----------------cceEEeCCCCCCCCceEEEe-cCCCCCCcc
Confidence 245678889999999999985 999998866543 22222222222245999997 7754
Q ss_pred cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccc
Q 023246 134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ 213 (285)
Q Consensus 134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 213 (285)
..++......++.++.+. |+.+..-+.-.-...|+.+.|+|.+++.|+.|+.+++|.-.+-.+-++.....++-.+. .
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~-~ 271 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ-A 271 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEE-E
Confidence 356666667777777775 55554333334456789999999999999999999999766655555544445554333 3
Q ss_pred cCCCceEEEeCCCCeEEEEEecc
Q 023246 214 GREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 214 ~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
.+++.+++.|+.||+|-.|++-.
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhHH
Confidence 45677889999999999998753
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=5e-13 Score=99.06 Aligned_cols=116 Identities=15% Similarity=0.302 Sum_probs=84.5
Q ss_pred ccceeEEEEcCCCCcEEEE--eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246 3 SIRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 80 (285)
.++|.+++|+|++ +.||+ |..++.|.+||++ ++ ....+ +...+..+.|+|+|++|+.+.
T Consensus 59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~--------------~i~~~---~~~~~n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GK--------------KIFSF---GTQPRNTISWSPDGRFLVLAG 119 (194)
T ss_pred CCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-cc--------------EeEee---cCCCceEEEECCCCCEEEEEE
Confidence 3579999999986 55433 4567899999997 32 11111 245678899999999888743
Q ss_pred ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------CCeEEEEec
Q 023246 81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK 150 (285)
Q Consensus 81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~ 150 (285)
.|.|.+||.... +.+..+... . +..++| +|+|++++++.. |..++||+.
T Consensus 120 ~~n~~G~l~~wd~~~~----------------~~i~~~~~~--~--~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKK----------------KKISTFEHS--D--ATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred ccCCCcEEEEEECCCC----------------EEeeccccC--c--EEEEEE-cCCCCEEEEEEeccceeccccEEEEEe
Confidence 578999999865 455444322 2 678885 999999999764 788999998
Q ss_pred CCCceEEEE
Q 023246 151 KGGKLVRLM 159 (285)
Q Consensus 151 ~~~~~~~~~ 159 (285)
. |+.+...
T Consensus 179 ~-G~~l~~~ 186 (194)
T PF08662_consen 179 Q-GRLLYKK 186 (194)
T ss_pred c-CeEeEec
Confidence 5 7766554
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=5e-12 Score=98.36 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=124.1
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
+-|+++.|+.. +.+|++|+.|..+++|++...-.. +.++|+. .....|...|.|++|....+++.+| .++
T Consensus 57 GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~---k~~KPI~-----~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 57 GCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVR---KTPKPIG-----VMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred cccceeeeccC-CeEEeecCCcceeeeechHHHHhh---cCCCCce-----eccCccccceEEEEEccCCeeEecCCCcc
Confidence 56899999996 599999999999999998632110 1122221 1123566899999999998999996 599
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eE--EEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LV--RLM 159 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~--~~~ 159 (285)
+|.+.|+.+. +.+..+....+...|+.+.. +|..+.+++.+.++.|.+||.+..+ .+ ..+
T Consensus 128 ~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 128 TVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred eeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 9999999987 45555544333334999986 8999999999999999999988655 22 122
Q ss_pred ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC
Q 023246 160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~ 195 (285)
.........+.|+|.... |++.+..+-+.+||.+..
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred cCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 223456788899997765 788888889999998644
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=9.8e-12 Score=107.73 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=138.1
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEE-ecC
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YND 81 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s-~~d 81 (285)
+-..+.|+|-. ..++++.....|+|||.+.++....+.... .....|+.+.+-.+- .++.+ ++|
T Consensus 1066 ~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGA------------FPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCC------------CCCCccceeeeecccchhheeeeccC
Confidence 34467899975 788888878899999999888654433222 123468888876643 35555 569
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc----eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
|.|+||+--.... .+.+.+..+.+-.+. .....+.=|.....+|+++++-..|+|||+...+.+.
T Consensus 1133 GvIRIwk~y~~~~-----------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKW-----------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred ceEEEeccccccc-----------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 9999998543210 111222222211100 0012222256666777777778999999999777777
Q ss_pred EEec-ccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC----CCCCCCCccc--ceeeccccCCCceEEEeCCCCeE
Q 023246 158 LMVG-DRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEK--IMKANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 158 ~~~~-h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~d~~i 229 (285)
.+.. ....|+++.-+- .|+.++.|..||.|++||.+... +.....|... ++........-+.+++++.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7653 345677776543 46889999999999999987543 3345556655 66665544444579999999999
Q ss_pred EEEEeccc
Q 023246 230 HVLRLQRR 237 (285)
Q Consensus 230 ~vwd~~~~ 237 (285)
++||++..
T Consensus 1282 ~~~DlR~~ 1289 (1387)
T KOG1517|consen 1282 QLLDLRMS 1289 (1387)
T ss_pred EEEecccC
Confidence 99999984
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1e-11 Score=104.26 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=117.9
Q ss_pred cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~ 79 (285)
..+.+.+|+|++ +.|+..+.+ ..|.+||+.+++.. .+ ..+.+....++|+|+|+.++. .
T Consensus 204 ~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 204 EPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------------LV-ASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred CccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE---------------Ee-ccCCCCccCceECCCCCEEEEEE
Confidence 467889999986 677666533 46999999877521 01 122334457899999986653 3
Q ss_pred -cCC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCC
Q 023246 80 -NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGG 153 (285)
Q Consensus 80 -~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~ 153 (285)
.++ .|++||+.++ ....+..+... ....+| +|++++++..+. +| .|+++++.++
T Consensus 267 s~~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 267 SRDGNPEIYVMDLGSR-----------------QLTRLTNHFGI--DTEPTW-APDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred eCCCCceEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 344 6999999876 23444444322 456776 999998877654 44 4777788776
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCC---CC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP---DV 227 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~ 227 (285)
+... +..+......++|+|++++++..+.++ .|.+||+.++....+... ....... +.++++.++..+. .+
T Consensus 327 ~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~~~~~p~-~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 327 SAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-SLDESPS-FAPNGSMVLYATREGGRG 403 (433)
T ss_pred CeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-CCCCCce-ECCCCCEEEEEEecCCce
Confidence 6433 322334455789999999987765433 699999987765444321 1111222 2444444443333 24
Q ss_pred eEEEEEecc
Q 023246 228 IMHVLRLQR 236 (285)
Q Consensus 228 ~i~vwd~~~ 236 (285)
.|+++++..
T Consensus 404 ~L~~~~~~g 412 (433)
T PRK04922 404 VLAAVSTDG 412 (433)
T ss_pred EEEEEECCC
Confidence 566666643
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=5.7e-12 Score=95.34 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=115.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+.+|.++.+.++ .+++. ..+.|.||...+. +.+..+ .. ........+++-.....+||. |.
T Consensus 94 ~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~------------et-~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 94 NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVI------------ET-RSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeee------------ec-ccCCCceEeecCCCCceEEEcCCC
Confidence 457888888884 33333 3579999998743 321111 11 111222333333333346666 54
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-EEEEecCCCceEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL 158 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~ 158 (285)
-|.|.|-|+.... ......+..|... |.+++. +.+|..+||++..|+ |++||..+|+.+.+
T Consensus 157 k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 157 KTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 7999999998651 0134778899987 999996 999999999999987 78999999999998
Q ss_pred Eec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 159 MVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 159 ~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.. ....|.+++|+|+..+|+.+|..|+++|+.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 873 34679999999999999999999999999986543
No 215
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=124.57 Aligned_cols=193 Identities=13% Similarity=0.201 Sum_probs=145.6
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~ 83 (285)
.|.++.=+|.. .+.+||+.||.|++|.-..++.+. +... .+ ...|+.+.|+.+|..+..+ .||.
T Consensus 2210 ~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~-----------~~rt--~g-~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVV-----------CFRT--AG-NSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEE-----------Eeec--cC-cchhhhhhhcccCCceeeeccCCc
Confidence 45566668864 688899999999999988776321 1111 12 3789999999999887775 5999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEecC-CCc--eEE
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK-GGK--LVR 157 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~~-~~~--~~~ 157 (285)
+.+|.+.. +.....+.|.-. ...+.|. +..+++++ +++.+.+||.. .+. +++
T Consensus 2275 l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2275 LSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred eeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccceee
Confidence 99999873 455666777744 7888874 25666644 58899999943 222 344
Q ss_pred EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
..|.+.++++++-|..+.|++|+.+|.|++||++..++ +.++. .....++++++..|.++||++..
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LDTREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hhhhheeeccCcccceEEEEccc
Confidence 78999999999999999999999999999999988775 33332 11344899999999999999999
Q ss_pred cccceeEeeec
Q 023246 237 RQTLAYRERRY 247 (285)
Q Consensus 237 ~~~~~~~~~~~ 247 (285)
...+..+.+..
T Consensus 2400 ~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2400 FGLLHTFPSEH 2410 (2439)
T ss_pred cchhhcCchhh
Confidence 88877765444
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.4e-12 Score=108.25 Aligned_cols=217 Identities=16% Similarity=0.264 Sum_probs=149.9
Q ss_pred ccceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccc---------------------------
Q 023246 3 SIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--------------------------- 53 (285)
Q Consensus 3 ~~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--------------------------- 53 (285)
..+++++.+.|... .++++.+.||.|++||...+.+++.+...-++.....
T Consensus 57 ~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~ 136 (792)
T KOG1963|consen 57 TAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKK 136 (792)
T ss_pred cCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccc
Confidence 45778888888654 5777999999999999998887665543322211100
Q ss_pred -----------------cccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec
Q 023246 54 -----------------RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 116 (285)
Q Consensus 54 -----------------~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (285)
..+...|.. -.+|.+++.|++.....+..+++|...... ........-..
T Consensus 137 ~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------~~~~~~~~~~~ 203 (792)
T KOG1963|consen 137 LSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------KHTSSRDITVH 203 (792)
T ss_pred cccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc------------eeeccchhhhh
Confidence 000011111 345666666666666667778888887641 00000011112
Q ss_pred ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC----CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 117 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
|.-. +++.++ +|+++++++|..||.|.+|.--. ......++-|...|.+++|+++|.+|++|+..|.+-+|.+
T Consensus 204 Htf~--~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 204 HTFN--ITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hccc--ceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 4433 788897 99999999999999999997332 2235667778899999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 193 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
.+++.+-++....++..+.. ++++.+......|.+|++....+
T Consensus 281 ~T~~kqfLPRLgs~I~~i~v-S~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 281 ETGKKQFLPRLGSPILHIVV-SPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cCCCcccccccCCeeEEEEE-cCCCCeEEEEecCceEEEEeccc
Confidence 99885556656666666655 46677777778899999987643
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.5e-11 Score=103.23 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=106.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeC---CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-E
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s 78 (285)
...+.+.+|+||+ ..|+..+. +..|.+||+.+++.. .+ ..+.+.+...+|+|+|+.|+ +
T Consensus 201 ~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 201 SSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred CCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEEE
Confidence 3578899999987 66666543 468999999877521 11 23455677889999998665 3
Q ss_pred ec-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCC
Q 023246 79 YN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKG 152 (285)
Q Consensus 79 ~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~ 152 (285)
.+ ++ .|++||+.++ ....+..+... .....| +|+++.++..+. + ..|+++|+..
T Consensus 264 ~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred EecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECCC
Confidence 33 44 4778888765 33444444432 556775 999998877664 3 3688889876
Q ss_pred CceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCC
Q 023246 153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFP 198 (285)
Q Consensus 153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~ 198 (285)
++. ..+..+...+....|+|++++++....+ ..|.+|++.++...
T Consensus 324 ~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~ 371 (435)
T PRK05137 324 SNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER 371 (435)
T ss_pred CCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 554 3444345567778999999998776643 36888888665543
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.49 E-value=4.8e-12 Score=106.33 Aligned_cols=219 Identities=14% Similarity=0.122 Sum_probs=141.6
Q ss_pred ccceeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCcc-cCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246 3 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHW-YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s 78 (285)
+.+|+.+.|-..- +.-|++++.||.|..|+++.-.. ......+ ..........-...+++++|.+... +++.
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~----~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE----SKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc----cccccccccccccceeeEeeccCCCceEEEE
Confidence 5678888886531 14599999999999998764331 0000000 0000000012234688999988653 4444
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEE
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVR 157 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~ 157 (285)
...|.|.--+-.... +.. ....+....+..|..+ |..+.+ +|-+..++..+.|.+|++|... ...++.
T Consensus 367 Te~G~v~~~~r~g~~-~~~-------~~~~~~~~~~~~h~g~--v~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYT-PAP-------EVSYKGHSTFITHIGP--VYAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred cCCcEEEEEeccCCc-ccc-------cccccccccccccCcc--eEeeec-CCCccceeeeeccceeEeccccCCCCcch
Confidence 568988774433221 000 0111233455667766 999997 7876655554449999999987 677888
Q ss_pred EEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 158 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.+..+...|++++|||...- |+++..||.|.+||+.... ..+.... ..+.....+...++.++.|...|.+++|+
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 88878888999999998776 8888889999999996543 2333223 44444444455678899999999999999
Q ss_pred eccc
Q 023246 234 LQRR 237 (285)
Q Consensus 234 ~~~~ 237 (285)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 8643
No 219
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.49 E-value=1.7e-11 Score=99.41 Aligned_cols=204 Identities=11% Similarity=0.119 Sum_probs=119.2
Q ss_pred eeEEEEcCCCCcEEEEee-CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCC
Q 023246 6 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE 82 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~ 82 (285)
...++|+|++ ++|++++ .++.|.+|++.+...... ..... .+......++++|+++++++ . .++
T Consensus 82 p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 82 PTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------PIQII--EGLEGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred ceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------ceeec--cCCCcccEeEeCCCCCEEEEeeCCCC
Confidence 4579999987 5555554 589999999974321100 00001 12234667889999987755 4 389
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCC--Cc--eEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK--LVR 157 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~--~~--~~~ 157 (285)
.|.+||+..... +.. ........... .....+.| +|++++++++.. ++.|.+|++.. ++ .+.
T Consensus 149 ~v~v~d~~~~g~----------l~~-~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 149 RIRLFTLSDDGH----------LVA-QEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEEEECCCCc----------ccc-cCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 999999975310 000 00011111111 12567887 999999988776 99999999873 33 233
Q ss_pred EEecc------cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC-CCCCCCCcc---cceeeccccCCCceEEE-eCC
Q 023246 158 LMVGD------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE---KIMKANKQGREDHSRIT-LTP 225 (285)
Q Consensus 158 ~~~~h------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~-~s~ 225 (285)
.+..+ ......+.++|++++++++. .++.|.+|++.... ...+.++.. ....+. ..++++++++ ...
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~-~~~dg~~l~va~~~ 294 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFN-IDHSGKYLIAAGQK 294 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceE-ECCCCCEEEEEEcc
Confidence 33221 11233588999999988875 47899999985432 111111110 111111 2334545554 445
Q ss_pred CCeEEEEEecc
Q 023246 226 DVIMHVLRLQR 236 (285)
Q Consensus 226 d~~i~vwd~~~ 236 (285)
++.|.+|++..
T Consensus 295 ~~~v~v~~~~~ 305 (330)
T PRK11028 295 SHHISVYEIDG 305 (330)
T ss_pred CCcEEEEEEcC
Confidence 89999998864
No 220
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.9e-12 Score=102.50 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=141.2
Q ss_pred CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE------ec--------------CCC
Q 023246 15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN--------------TSE 74 (285)
Q Consensus 15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~------s~--------------~~~ 74 (285)
...++|....||.+++|+...++....+.... .-.+..++..| +| +..
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch------------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 45799999999999999999887532221111 11223333333 11 223
Q ss_pred EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246 75 LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 153 (285)
Q Consensus 75 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 153 (285)
+++-|. .|.|.+|+...+ +....+........|.++.+ +.+-..|.+++.|+.+..|+...+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccc
Confidence 555565 899999999888 56666664333344888885 888899999999999999999999
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccC----CCceEE-EeCCCC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR----EDHSRI-TLTPDV 227 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~-~~s~d~ 227 (285)
+.++.+......+.+++.+||+.++++++ ++|++||+++.++ ..+.+|..++.++..... .+.+++ +...+.
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 99999998889999999999999999998 7899999999884 789999998876654333 123443 344456
Q ss_pred eEEEEEecccc
Q 023246 228 IMHVLRLQRRQ 238 (285)
Q Consensus 228 ~i~vwd~~~~~ 238 (285)
-+.+|-+....
T Consensus 213 ~i~~w~v~~~~ 223 (541)
T KOG4547|consen 213 GITVWVVEKED 223 (541)
T ss_pred ceeEEEEEccc
Confidence 77888766543
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6e-11 Score=91.46 Aligned_cols=163 Identities=10% Similarity=0.163 Sum_probs=108.3
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc-CCcCCCCCccccccccc-CCCCCcceEEEEEecCCCEEEEec-
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
..|+|++|-|-+..-|+.|+. +-|.||.....-.. ..+... .+.+...+ ..+| .+|++++|.+||..+++++
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~---s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMM---STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccc---cccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 468999999988788888887 45889987632211 111100 00011111 1344 6899999999999999864
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRL 158 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~ 158 (285)
|..|.|||..++ ..+........ .+.-+.| +|++.++++++-|+..++|+.. +....+.
T Consensus 216 gsssi~iWdpdtg----------------~~~pL~~~glg--g~slLkw-SPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 216 GSSSIMIWDPDTG----------------QKIPLIPKGLG--GFSLLKW-SPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred CcceEEEEcCCCC----------------CcccccccCCC--ceeeEEE-cCCCCEEEEecccceeeeehhcccceecce
Confidence 899999999987 22222211222 2777885 9999999999999999999643 3334433
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
..+ .+.|...+|+|+|++|+.++. |.=++|.+
T Consensus 277 ~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 277 ILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred ecc-CCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence 333 458999999999998554432 33445543
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=1.9e-12 Score=97.99 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=125.4
Q ss_pred CcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 61 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
..+|+|.+|++++..+|.+ +...|.||..... ..++..+++..|... |+.++| +|..+.|+++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-------------~~w~~~htls~Hd~~--vtgvdW-ap~snrIvtc 73 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-------------DLWEPAHTLSEHDKI--VTGVDW-APKSNRIVTC 73 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-------------CCceeceehhhhCcc--eeEEee-cCCCCceeEc
Confidence 4589999999999999886 5789999998765 224677888889866 999995 9999999999
Q ss_pred cCCCeEEEEecC-CC--ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC----CC-CCCcccceeec
Q 023246 140 SDCGHLFIWKKK-GG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP----PL-PDNAEKIMKAN 211 (285)
Q Consensus 140 ~~dg~v~vwd~~-~~--~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~----~~-~~~~~~~~~~~ 211 (285)
+.|..-++|... .+ ++...+..++..++++.|+|.++.|++|+.-..|.+|-++...-- .+ +.....+.++.
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 999999999984 33 355566678899999999999999999999999999988766521 12 12334455555
Q ss_pred cccCCCceEEEeCCCCeEEEEEe
Q 023246 212 KQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 212 ~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
| .+++-++++|+.|+..+||..
T Consensus 154 W-hpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 154 W-HPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred c-cCCcceecccccCcceeEEEE
Confidence 5 445668889999999999965
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.7e-12 Score=101.50 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=118.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---C-EEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E-LLIS 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~-~l~s 78 (285)
++.|.++.|+||+ .+|++-+.| ..+||+..++..+.... + ..-......+.|+.++ . ++++
T Consensus 186 ~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t---------~----~~k~~~~~~cRF~~d~~~~~l~laa 250 (398)
T KOG0771|consen 186 HAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT---------P----FSKDEMFSSCRFSVDNAQETLRLAA 250 (398)
T ss_pred cCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC---------C----cccchhhhhceecccCCCceEEEEE
Confidence 5789999999986 899999999 99999999985322111 0 2223455677888776 2 3344
Q ss_pred e-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE
Q 023246 79 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 156 (285)
Q Consensus 79 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 156 (285)
. . .+.|+.|++....+. .-.+..+....+ +.|.+++. +++|++++.|+.||.|.+++..+-+.+
T Consensus 251 ~~~~~~~v~~~~~~~w~~~----------~~l~~~~~~~~~---~siSsl~V-S~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 251 SQFPGGGVRLCDISLWSGS----------NFLRLRKKIKRF---KSISSLAV-SDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ecCCCCceeEEEeeeeccc----------cccchhhhhhcc---CcceeEEE-cCCCcEEEEeccCCcEEEEEeceeeee
Confidence 3 3 677888777544110 000111112222 23899997 999999999999999999999888877
Q ss_pred EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 157 RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 157 ~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
+.. +.|...|+.+.|+|+.+++++.+.|.++.+..+..
T Consensus 317 ~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 655 47999999999999999999999999999988755
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=7.9e-14 Score=110.19 Aligned_cols=186 Identities=13% Similarity=0.243 Sum_probs=138.9
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~ 83 (285)
.|.++.|-.. ..+|| ..+...+.|||-..-++- |+. . ...|..+.|-|..-+|+++ ..|.
T Consensus 172 tv~Dv~~LHn-eq~~A-VAQK~y~yvYD~~GtElH------------Clk----~-~~~v~rLeFLPyHfLL~~~~~~G~ 232 (545)
T KOG1272|consen 172 TVRDVTFLHN-EQFFA-VAQKKYVYVYDNNGTELH------------CLK----R-HIRVARLEFLPYHFLLVAASEAGF 232 (545)
T ss_pred hhhhhhhhcc-hHHHH-hhhhceEEEecCCCcEEe------------ehh----h-cCchhhhcccchhheeeecccCCc
Confidence 3556666663 24444 556788999997633321 222 1 2368889999988888885 4899
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 163 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 163 (285)
++--|+..+ +.+..+...... +..++- +|-+-.+-+|...|+|.+|.....+++..+..|.
T Consensus 233 L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~ 293 (545)
T KOG1272|consen 233 LKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR 293 (545)
T ss_pred eEEEeechh----------------hhhHHHHccCCc--cchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence 999999998 788777766655 666774 8888889999999999999999999999999999
Q ss_pred ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
++|.++++.|+|+|++|.+.|..++|||++.-. +.++.. +...-. ....+-+++.+....+.+|.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l-----s~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL-----SLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc-----ccccccceeeecCCeeeeeh
Confidence 999999999999999999999999999998765 333322 222211 22233566777788899994
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.4e-11 Score=98.52 Aligned_cols=158 Identities=9% Similarity=0.080 Sum_probs=103.8
Q ss_pred CCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246 58 GKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 133 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 133 (285)
..|...+...+|+|+|+.|+..+ +..|++||+.++ ....+..+... +....| +|+|
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----------------~~~~l~~~~g~--~~~~~~-SPDG 257 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----------------QRELVGNFPGM--TFAPRF-SPDG 257 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----------------cEEEeecCCCc--ccCcEE-CCCC
Confidence 45677899999999999776632 568999999876 22344444433 667775 9999
Q ss_pred cEEE-EecCCCe--EEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccc
Q 023246 134 EYVM-SGSDCGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKI 207 (285)
Q Consensus 134 ~~l~-~~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~ 207 (285)
+.++ +.+.++. |++||+.+++. ..+..+........|+|+++.++..+. ++ .|.+||+.++....+.......
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 8775 5555554 88889987755 445556666778999999999877663 33 6888888777654443222222
Q ss_pred eeeccccCCCceEEEeCCC---CeEEEEEeccc
Q 023246 208 MKANKQGREDHSRITLTPD---VIMHVLRLQRR 237 (285)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~d---~~i~vwd~~~~ 237 (285)
.... ++++++.++..+.+ ..|.+||+...
T Consensus 337 ~~~~-~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 337 STPV-WSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cCeE-ECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2222 34555555443332 46788887543
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.8e-11 Score=102.01 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=144.8
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL 86 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~i 86 (285)
++.+++.+ ++. .-..+..+.+|+..++.. ..........|.-.+++.+++|+++++|++. ||.|.+
T Consensus 165 ~I~~~~~g-e~~-~i~~~~~~~~~~v~~~~~-----------~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 165 SIVDNNSG-EFK-GIVHMCKIHIYFVPKHTK-----------HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred cEEEcCCc-eEE-EEEEeeeEEEEEecccce-----------eeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 56777743 443 344567889999886531 1133333356777899999999999999985 999999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 166 (285)
|.--... ......+.+.-|.++ |.+++| +++|.+|++|+.+|.+.+|.+.+++. .-+..-.++|
T Consensus 232 w~d~~~~------------~~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I 295 (792)
T KOG1963|consen 232 WRDFGSS------------DDSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPI 295 (792)
T ss_pred Eeccccc------------cccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCCc-ccccccCCee
Confidence 9754310 011244667778776 999997 99999999999999999999998883 3334456899
Q ss_pred eEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC---C-------cccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---N-------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~-------~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
..+.++||+.+.+....|..|.+-......+ ..+.+ . ...........+..+.++-....|.|.+||+.
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 9999999999999999999999987644322 11111 1 11111111122223356667788999999999
Q ss_pred ccccceeE
Q 023246 236 RRQTLAYR 243 (285)
Q Consensus 236 ~~~~~~~~ 243 (285)
+...+..+
T Consensus 376 td~~i~~~ 383 (792)
T KOG1963|consen 376 TDSTIYKL 383 (792)
T ss_pred ccceeeeE
Confidence 88777555
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=8.8e-12 Score=104.03 Aligned_cols=223 Identities=10% Similarity=0.093 Sum_probs=154.0
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~- 80 (285)
++....|++|+.. ..++|+|+.||.+++..+.+.......+.-.....+...+.+.+|...|.-+.|+.+.+.|.++.
T Consensus 13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 3567899999996 48999999999999999876543322222223344455666789999999999999999999875
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
+|.|.+|-+-.+ .-...+...+++..|.+++| +.+|..+.....||.|.+=.++ |..+.--.
T Consensus 92 ~GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvd-GNRIwgKe 153 (1189)
T KOG2041|consen 92 SGLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVD-GNRIWGKE 153 (1189)
T ss_pred CceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeec-cceecchh
Confidence 999999999776 34445555555566899995 9999999999999999988876 44443221
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC------------CCCCcccceeeccc-------cCCCceEE
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP------------LPDNAEKIMKANKQ-------GREDHSRI 221 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~-------~~~~~~~~ 221 (285)
-.......+.|++|.+.++.+-..|.+.++|..+.-... +......+-.+.|. .++...++
T Consensus 154 Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 154 LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 112335578899999988888888999999975431111 01011112222221 12334666
Q ss_pred EeCCCCeEEEEEecccccceeE
Q 023246 222 TLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 222 ~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.+-.+|.+.+..-.+...+..+
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeEE
Confidence 6777888888766555555444
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7.3e-11 Score=98.80 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=100.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s- 78 (285)
+..+.+.+|+|++ +.|+..+.+ ..|.+||+.+++.. . + ....+.+....|+|+|+.|+.
T Consensus 195 ~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~--------------~-l-~~~~g~~~~~~~SPDG~~la~~ 257 (427)
T PRK02889 195 PEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR--------------V-V-ANFKGSNSAPAWSPDGRTLAVA 257 (427)
T ss_pred CCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE--------------E-e-ecCCCCccceEECCCCCEEEEE
Confidence 3567889999987 666665532 35999999877521 0 1 112334567899999987664
Q ss_pred e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEE--ecCCCc
Q 023246 79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIW--KKKGGK 154 (285)
Q Consensus 79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vw--d~~~~~ 154 (285)
. .++...||.+.... .....+..+... .....| +|+|+.++..+. +|...+| ++.+++
T Consensus 258 ~~~~g~~~Iy~~d~~~---------------~~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 258 LSRDGNSQIYTVNADG---------------SGLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred EccCCCceEEEEECCC---------------CCcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 3 47766666543210 133444443322 455675 999998876554 4555555 455444
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL 200 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~ 200 (285)
.. .+..+.......+|+|+|++++..+.++ .|.+||+.++....+
T Consensus 320 ~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 320 AQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred eE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 32 2222233345678999999988776554 699999987765444
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=3.2e-11 Score=91.90 Aligned_cols=214 Identities=15% Similarity=0.098 Sum_probs=126.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-- 80 (285)
..++.+++|||+|..+|.+...|-.|.+|.+.+.+.... ..-...+..++|+|+|++.+..+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~----------------~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL----------------PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------cccccCceeEEECCCCceeeeeecc
Confidence 357889999999878899999999999999987652111 11122346677777777655432
Q ss_pred CCc--EEE-----------EEcCCCC------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246 81 DEL--VYL-----------FEKNMGL------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 141 (285)
Q Consensus 81 d~~--i~i-----------wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 141 (285)
|.. +.| +++.+.. +|....+..++ +.-....+.-+. .-.+..++| +|.+++++.|+.
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~-~lG~k~v~w-sP~~qflavGsy 230 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYER-GLGLKFVEW-SPCNQFLAVGSY 230 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--chhhheeeeeee-ccceeEEEe-ccccceEEeecc
Confidence 321 111 1111110 00000000000 000001111111 122788885 999999999999
Q ss_pred CCeEEEEecCCCceEE------------------------------------------------------------EEe-
Q 023246 142 CGHLFIWKKKGGKLVR------------------------------------------------------------LMV- 160 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~------------------------------------------------------------~~~- 160 (285)
|+.+++.+.-+-+... .++
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 9999887643221110 011
Q ss_pred -----cccccceEeEEcCCCCeEEEEecC--CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 161 -----GDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 161 -----~h~~~v~~~~~~p~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
.....+.-++|++|..+++|-... ..+-+||++..++........++....|..... .++.......+++|.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEc
Confidence 012346678999999999887632 478999999988877666677777776644434 444455556699998
Q ss_pred eccc
Q 023246 234 LQRR 237 (285)
Q Consensus 234 ~~~~ 237 (285)
....
T Consensus 390 psg~ 393 (447)
T KOG4497|consen 390 PSGP 393 (447)
T ss_pred CCCc
Confidence 6653
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.9e-12 Score=103.31 Aligned_cols=167 Identities=16% Similarity=0.218 Sum_probs=124.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d 81 (285)
.+++++|..++-+ .+|++|+.+|.|..||.++......+.....+... ........|+++.|+.+|-.++.| +.
T Consensus 175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence 4689999999976 79999999999999999987654443322221110 001123359999999999888887 59
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
|.+.|||+++. ++ .....|....+|..+.|...+++-.+...+...+++||-.+|+....+..
T Consensus 250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 99999999986 23 34456766667999996333333344445578899999999999988875
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
...++.+++-|++-+++++-.+..+..|-+
T Consensus 313 -t~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 313 -TSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred -cCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 456999999999999999998887766643
No 231
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.4e-11 Score=103.13 Aligned_cols=166 Identities=11% Similarity=0.050 Sum_probs=107.1
Q ss_pred eeEEEEcCCCCcEEEEe-eCCCcEEEEE--ccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-c
Q 023246 6 LNAIVIDPRNPNYFAVG-GSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N 80 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg-~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~ 80 (285)
..+++|+|++ ..|+.+ +.+|.+.||. +.+++ ...+ ..+...+....|+|+|+.|+. + .
T Consensus 250 ~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~---------------~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 250 NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT---------------PSQL-TSGAGNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC---------------eEee-ccCCCCcCCEEECCCCCEEEEEECC
Confidence 4468999987 555554 5788877765 44443 1112 345556788999999996665 4 3
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
++...||++.... .....+ .+.. ....| +|++++++..+.++ +.+||+.+++......
T Consensus 313 ~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 313 SGSPQVYRMSASG---------------GGASLV-GGRG----YSAQI-SADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CCCceEEEEECCC---------------CCeEEe-cCCC----CCccC-CCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 6788888875431 122222 2221 34565 99999998887765 5569998887543222
Q ss_pred cccccceEeEEcCCCCeEEEEecCCcEEEEcC---CCCCCCCCCCCcccceeecc
Q 023246 161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKIMKANK 212 (285)
Q Consensus 161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~ 212 (285)
. .....+.|+|++++|+.++.++.+.+|.+ .+.....+..+...+....|
T Consensus 371 ~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 371 T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 2 23456889999999999998998887765 34445556555555544444
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=1.4e-10 Score=97.29 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=105.3
Q ss_pred ceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 5 RLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
.+.+.+|+|++ .+|+.+..+ ..|++||+.+++.. .+ ..+...+.+++|+|+|+.|+. ..
T Consensus 191 ~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 191 PILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred ceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEEEEC
Confidence 57788999986 667666543 47999999877521 11 223445667899999986654 32
Q ss_pred -C--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCCc
Q 023246 81 -D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK 154 (285)
Q Consensus 81 -d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~~ 154 (285)
+ ..|++|++.++ ....+..+... .....| +++++.|+..+. .+ .|+++|+.+++
T Consensus 254 ~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 254 KDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3 46888998765 22333333322 345665 899998876554 33 68888988766
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFP 198 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~ 198 (285)
.. .+..+...+..+.|+|++++++.++.++ .|.+||+.++...
T Consensus 314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 43 3444456677889999999988887765 7889998776543
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=6.5e-12 Score=108.41 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=120.7
Q ss_pred EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246 10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE 88 (285)
Q Consensus 10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd 88 (285)
.++++ .-++++|+.-+.|.+|+....+ . ...+.+|.+.|..+.|+.+|+++++. .|.++++|+
T Consensus 140 g~s~~-~~~i~~gsv~~~iivW~~~~dn--------------~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 140 GDSAE-ELYIASGSVFGEIIVWKPHEDN--------------K-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP 203 (967)
T ss_pred eccCc-EEEEEeccccccEEEEeccccC--------------C-cceecccCCceEEEEEccCCcEEEEEecCcceeeee
Confidence 34564 4789999999999999988222 1 11338999999999999999999995 599999999
Q ss_pred cCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc-ccc
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVV 166 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v 166 (285)
+.+. +... ..-+|... +..++| .|+ ++++++.|.+.++|+.+ ++.+..+..|. ..+
T Consensus 204 i~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 204 IDSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGI 261 (967)
T ss_pred cccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhcce
Confidence 9987 3333 55678866 999997 666 99999999999999776 66666888876 568
Q ss_pred eEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
..++..+.....+|++.|+.+++|++.+
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999988999999999999999754
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=5.7e-11 Score=99.39 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=107.0
Q ss_pred eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c-C
Q 023246 6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-D 81 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~-d 81 (285)
+...+|+||+..++++.+.+| .|.+||+.+++.. .+ ..+...+....|+|+|+.|+.. . +
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCCC
Confidence 456899998744444555555 4888898876521 11 2223456789999999977654 3 3
Q ss_pred Cc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---CeEEEEecCCCceE
Q 023246 82 EL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLV 156 (285)
Q Consensus 82 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~~ 156 (285)
+. |+++++.++ ....+...... .....| +|+|++++..+.+ ..|++||+.+++..
T Consensus 309 g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 309 GRPQVYKVNINGG-----------------APQRITWEGSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCceEEEEECCCC-----------------CeEEeecCCCC--ccCEEE-CCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 44 445565544 22333333222 456775 9999998775543 45889999877643
Q ss_pred EEEecccccceEeEEcCCCCeEEEEecCCc---EEEEcCCCCCCCCCCCCcccceeecc
Q 023246 157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKIMKANK 212 (285)
Q Consensus 157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~ 212 (285)
.+.. ........|+|+|++|+.++.++. +.++++.+.....+..+...+....|
T Consensus 369 -~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 369 -VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred -EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCccc
Confidence 3432 223456789999999998887764 67788877666666655555544433
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=5.4e-11 Score=92.43 Aligned_cols=203 Identities=8% Similarity=0.011 Sum_probs=137.7
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEec-C--CcEEEEEcCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISYN-D--ELVYLFEKNMG 92 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~~-d--~~i~iwd~~~~ 92 (285)
..|++|-.+|.+.+|....+.... . .+..+ .-...+..+.-++.... +++|. . ..+.+||+...
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hs-----s-----~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHS-----S-----KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred CEEEEEecCCcEEEEeccCCcccc-----c-----cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 477888899999999998664210 0 00111 11234556666666554 44454 5 78999999864
Q ss_pred CCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCC-ceEEEEecccccceEe
Q 023246 93 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQL 169 (285)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~~ 169 (285)
. ..++...+++- .-+-.-+..++++.| -+. ...|++++.-+.|++||.+.+ +++..+..-..+++++
T Consensus 184 ~----qiw~aKNvpnD-----~L~LrVPvW~tdi~F-l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 184 K----QIWSAKNVPND-----RLGLRVPVWITDIRF-LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred e----eeeeccCCCCc-----cccceeeeeecccee-cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 1 00000001000 001112233677887 444 678999999999999998864 4678887778899999
Q ss_pred EEcCCCCeEEEEecCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246 170 EPHPHIPMFATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 242 (285)
Q Consensus 170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~ 242 (285)
...|.++.+.+|..-+.+..+|++.+++ ..+.+..+.+..+. +.+..+++++++-|+.++|+|+++.+.+..
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih-~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH-CHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE-EcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999999999999999999999885 23555555554443 344556899999999999999999765543
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.9e-10 Score=96.56 Aligned_cols=176 Identities=12% Similarity=0.093 Sum_probs=109.5
Q ss_pred CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCC
Q 023246 26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS 101 (285)
Q Consensus 26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~ 101 (285)
..|.+||..... +..+ ..+...+...+|+|+|+.|+..+ ...|++||+.++
T Consensus 184 ~~l~i~D~~g~~---------------~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--------- 238 (433)
T PRK04922 184 YALQVADSDGYN---------------PQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--------- 238 (433)
T ss_pred EEEEEECCCCCC---------------ceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---------
Confidence 358888876432 2222 34566789999999999777642 346999999766
Q ss_pred CccccCCCCceEeecccCceeeeeEEEecCCCcEEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeE
Q 023246 102 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 178 (285)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 178 (285)
....+...... .....| +|+|+.++ +.+.+| .|++||+.+++. ..+..+.......+|+|+++.|
T Consensus 239 --------~~~~l~~~~g~--~~~~~~-SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 239 --------QRELVASFRGI--NGAPSF-SPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred --------CEEEeccCCCC--ccCceE-CCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEE
Confidence 22233333322 446775 99998775 444444 699999987764 3455555556788999999988
Q ss_pred EEEec-CCc--EEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC---CeEEEEEeccccc
Q 023246 179 ATCGI-EKT--VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQT 239 (285)
Q Consensus 179 ~t~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~i~vwd~~~~~~ 239 (285)
+..+. ++. |.++++.++....+........... ++++++.++..+.+ ..|.+||+.+++.
T Consensus 307 ~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~-~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARAS-VSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred EEEECCCCCceEEEEECCCCCeEEeecCCCCccCEE-ECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 77663 444 6666776665433322221222222 34555555544333 3689999876543
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=6.6e-10 Score=93.11 Aligned_cols=159 Identities=12% Similarity=0.078 Sum_probs=98.0
Q ss_pred CCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 59 KNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+...+.+.+|+|+|+.|+..+ ...|++||+.++ +. ..+...... +....| +|+++
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g----------------~~-~~l~~~~g~--~~~~~~-SPDG~ 252 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG----------------RR-RVVANFKGS--NSAPAW-SPDGR 252 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC----------------CE-EEeecCCCC--ccceEE-CCCCC
Confidence 4566788999999999777642 346999999876 22 333333322 556775 99998
Q ss_pred EEE-EecCCCeEEEE--ecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CCcEEEEcC--CCCCCCCCCCCcccce
Q 023246 135 YVM-SGSDCGHLFIW--KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAP--MPTDFPPLPDNAEKIM 208 (285)
Q Consensus 135 ~l~-~~~~dg~v~vw--d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~ 208 (285)
.++ +.+.+|...+| |+..++ +..+..+........|+|+|+.|+..+. ++...+|.+ .++....+........
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC
Confidence 876 56777765555 555443 4555555556677899999998776653 456666654 4444322221111111
Q ss_pred eeccccCCCceEEEeCCCC---eEEEEEeccccc
Q 023246 209 KANKQGREDHSRITLTPDV---IMHVLRLQRRQT 239 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s~d~---~i~vwd~~~~~~ 239 (285)
... ++++++.++..+.++ .|++||+.+++.
T Consensus 332 ~~~-~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 332 SPR-ISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred ceE-ECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 222 345566665544443 699999877643
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.2e-09 Score=91.98 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=96.6
Q ss_pred cceeEEEEcCCCCcEEEEee-CCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246 4 IRLNAIVIDPRNPNYFAVGG-SDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~ 79 (285)
..+.+..|+||+ ..|+..+ .++ .|.+||+.+++.. ... ...+.....+|+|+|+.|+. .
T Consensus 218 ~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~------------~lt----~~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 218 EPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVRE------------KVT----SFPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred CcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Eec----CCCCCcCCeeECCCCCEEEEEE
Confidence 356788999987 5555544 333 4778888776521 011 11122346799999997664 3
Q ss_pred -cCCc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCCC
Q 023246 80 -NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKGG 153 (285)
Q Consensus 80 -~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~~ 153 (285)
.++. |+++|+.++ ....+..+... .....| +|+++.++..+. + ..|+++|+.++
T Consensus 281 ~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 281 SKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred eCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3554 777888765 23334433322 556775 999998866543 3 35777788877
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPL 200 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~ 200 (285)
+... +..+.......+|+|++++++..+. ++ .|.++|+.++....+
T Consensus 341 ~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 341 KVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL 389 (448)
T ss_pred CEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc
Confidence 6543 2222223445789999999776654 34 455567777654333
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=4.2e-11 Score=91.73 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=143.2
Q ss_pred cceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccC-Cc--------------------CCCCCcccccccccCCCCC
Q 023246 4 IRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYS-PI--------------------SSDTPVDTFCPRHLIGKNN 61 (285)
Q Consensus 4 ~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~~~h~ 61 (285)
.+|+.+.|.++ +...++..+.|.+|++|-+....... .+ ..+..+...+.+....+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 36788899775 44578888999999999987543211 00 0011112223445557899
Q ss_pred cceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246 62 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 141 (285)
Q Consensus 62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 141 (285)
..|.+|.++.|++.+.++.|-.|.+|++.... .++.+-++++. .+..-.. .|++..|+....+.++-.+.
T Consensus 165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d----~sFnIVDIKP~----nmEeLte--VITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSADDLRINLWNLEIID----QSFNIVDIKPA----NMEELTE--VITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCccceEeeccceeeeeccccccC----CceeEEEcccc----CHHHHHH--HHhhhccCHhHccEEEEecC
Confidence 99999999999999999999999999997542 11111111111 0111111 27788884445677888888
Q ss_pred CCeEEEEecCCCceE------EEE----------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCCC
Q 023246 142 CGHLFIWKKKGGKLV------RLM----------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPDN 203 (285)
Q Consensus 142 dg~v~vwd~~~~~~~------~~~----------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~ 203 (285)
.|+|++.|++...+. ... ..--..|..+.|+++|+++++-.. -+|++||+. .+.+.+.+.|
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 999999999854321 111 111246888999999999987753 589999984 3333333322
Q ss_pred c------------ccce---eeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 204 A------------EKIM---KANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 204 ~------------~~~~---~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
. ..++ ... ++.++.++++|+.....+++++.++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~-~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECS-WSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEE-EcCCcceEecccccceEEEecCCCCcc
Confidence 2 1111 111 233455889999999999999766543
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=9.3e-11 Score=93.68 Aligned_cols=245 Identities=10% Similarity=0.089 Sum_probs=159.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccc------------------------------
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF------------------------------ 51 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------------------ 51 (285)
+.+-|+.+.|+..| ..|++|+.|..|.+||...+.....+........|
T Consensus 141 H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 45789999999986 89999999999999998776543332211100000
Q ss_pred --cc-cccCCCCCcceEEEEEecCCC-EEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccC-cee
Q 023246 52 --CP-RHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRN-SQT 122 (285)
Q Consensus 52 --~~-~~~~~~h~~~v~~i~~s~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~ 122 (285)
+. ...+..|.++|..++.-|+.. -|.+ |.|+.+.-+|++... ....+. .+.. ...
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~----------------pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV----------------PAEKFVCREADEKERVG 283 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC----------------ccceeeeeccCCcccee
Confidence 00 112246888899999888774 3444 679999989987662 212221 1111 123
Q ss_pred eeeEEEecCCC-cEEEEecCCCeEEEEecCCCc------eEEEEec------ccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246 123 VKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK------LVRLMVG------DRHVVNQLEPHPHIPMFATCGIEKTVKL 189 (285)
Q Consensus 123 i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~------~~~~~~~------h~~~v~~~~~~p~~~~l~t~~~d~~i~i 189 (285)
...++. +|.. .++++++.|-.+++||.+.-. .+..+.. ..-.|++++++.++.-++++-.|-.|++
T Consensus 284 L~~Ia~-~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 284 LYTIAV-DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeEec-CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 677886 6654 488999999999999976422 1233322 1246899999988777777777889999
Q ss_pred EcCCCC-------------CCCC-CCCCc--ccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE----------
Q 023246 190 WAPMPT-------------DFPP-LPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR---------- 243 (285)
Q Consensus 190 wd~~~~-------------~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~---------- 243 (285)
+...-+ .... +++|. ..+...+.+.+...++++||.-|.|.+|+-.+.+.+..+
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 964311 1122 45554 336677777777889999999999999998877666554
Q ss_pred eeeccccccCCCCCcCeEEEe
Q 023246 244 ERRYNAADFESDEEEGETYLL 264 (285)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~ 264 (285)
+.-|-...|++..-+-.|-++
T Consensus 443 EpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred CCCCCCchhhccCCccceeee
Confidence 333444455555444445444
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.9e-09 Score=90.71 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=100.4
Q ss_pred cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~ 79 (285)
..+...+|+|++ ..|+..+.+ ..|.+||+.+++... + ....+.+....|+|+|+.|+. .
T Consensus 199 ~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~---------------l-~~~~g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 199 EPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ---------------I-TNFEGLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred CceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE---------------c-cCCCCCcCCeEECCCCCEEEEEE
Confidence 457788999987 666555433 358888998775211 1 111233456899999987764 3
Q ss_pred c-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCCC
Q 023246 80 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKGG 153 (285)
Q Consensus 80 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~~ 153 (285)
. ++ .|++||+.++ ....+..+... .....| +|+++.++..+. + ..|+++++.++
T Consensus 262 ~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 262 SKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred ccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2 43 6888898775 23334433322 455665 999988766553 3 36888888877
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecC-C--cEEEEcCCCCCCCCC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPL 200 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~ 200 (285)
+... +...........|+|++++++..+.+ + .|.+||+.++....+
T Consensus 322 ~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 322 RAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 6433 22122234457899999998776643 3 578889887764433
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.3e-09 Score=89.58 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=112.1
Q ss_pred ceeEEEEcCCCCc--EEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246 5 RLNAIVIDPRNPN--YFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~--~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 80 (285)
.+.+-+|+||+.. ++++...+| .|.+.++.+++.. .+ ....+.....+|||||+.|+...
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------~l----t~~~g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------KI----LALQGNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce------------Ee----ecCCCCccceEECCCCCEEEEEE
Confidence 4456689998744 333554444 4666677766421 11 11233345689999998776532
Q ss_pred --CC--c--EEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec-CCCe--EEEEec
Q 023246 81 --DE--L--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-DCGH--LFIWKK 150 (285)
Q Consensus 81 --d~--~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--v~vwd~ 150 (285)
+| . +.+|++..+. ......+. ..... ....+| +|+|+.|+..+ .+|. |+++++
T Consensus 250 ~~~g~~di~~~~~~~~~g~--------------~g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGA--------------IGKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCCCCcceeEEEeecccCC--------------CCcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEEC
Confidence 23 2 3346655420 01122222 22111 355675 99999877655 4564 555555
Q ss_pred CC-CceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEE-EeCC
Q 023246 151 KG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI-TLTP 225 (285)
Q Consensus 151 ~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ 225 (285)
.. +.....+..+...+....|+|+|++|+..+.+ ..|.+||+.+++...+...........| .++++.++ +...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~w-SpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSW-AIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEE-CCCCCEEEEEECC
Confidence 42 23344455445567789999999998776543 3689999988876554432222223333 34444443 3333
Q ss_pred --CCeEEEEEeccccc
Q 023246 226 --DVIMHVLRLQRRQT 239 (285)
Q Consensus 226 --d~~i~vwd~~~~~~ 239 (285)
...|+++|+..++.
T Consensus 392 ~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 392 SNESELYLISLITKKT 407 (428)
T ss_pred CCCceEEEEECCCCCE
Confidence 35677778766543
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.27 E-value=3.4e-09 Score=88.94 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=100.0
Q ss_pred CCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 59 KNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+...+...+|+|+|++|+... ...|++||+.++ ....+..+... +..++| +|+++
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-----------------~~~~~~~~~~~--~~~~~~-spDg~ 246 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-----------------QREKVASFPGM--NGAPAF-SPDGS 246 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-----------------CEEEeecCCCC--ccceEE-CCCCC
Confidence 4555788899999999877642 257999999876 22233333332 556775 99998
Q ss_pred EEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC-C--cEEEEcCCCCCCCCCCCCcccce
Q 023246 135 YVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIM 208 (285)
Q Consensus 135 ~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~ 208 (285)
.|+ +.+.++ .|++||+.+++. ..+..+........|+|++++|+..+.. + .|.++++.+++...+..+.....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 775 444444 588999987654 3444455555678999999987766543 3 57788887766443332222222
Q ss_pred eeccccCCCceEEEeCCCC---eEEEEEeccc
Q 023246 209 KANKQGREDHSRITLTPDV---IMHVLRLQRR 237 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s~d~---~i~vwd~~~~ 237 (285)
...+ .+++++++..+.++ .|.+||+.++
T Consensus 326 ~~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 326 SPSW-SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CeEE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 2322 44555665555554 7888888764
No 244
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=3.4e-11 Score=100.87 Aligned_cols=203 Identities=15% Similarity=0.208 Sum_probs=143.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEecC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYND 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~d 81 (285)
...|+.+.|+|+++..+++++.|-.|..||+++... ++..+ ..-......++|+- ++..+|++..
T Consensus 114 sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------p~ys~------~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 114 SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------PFYST------SSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred ccceeccccCCCCCcceeeccccccceeeeccCCCc--------ceeee------ecccccCceeeecccCcchhhhccC
Confidence 346889999999999999999999999999997651 22222 22233456788886 4567888889
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce--EEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM 159 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~ 159 (285)
+.|.+||.+.+. ..+..+++|... ++.+.|.......+.+.+.||+|+.||...... -+..
T Consensus 180 ~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred CceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 999999998773 567788887765 888887444556788999999999999875432 2222
Q ss_pred ecccccceEeEEcCCCCe--EEEEecCCcEEEEcCC---------CC--CCCCCCCCcccceeeccccCC---------C
Q 023246 160 VGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAPM---------PT--DFPPLPDNAEKIMKANKQGRE---------D 217 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~---------~~--~~~~~~~~~~~~~~~~~~~~~---------~ 217 (285)
. ...+|..-.+-|-|.- +.-.-.+..+.+++.+ .. .+.++.+|...++...|+... +
T Consensus 243 t-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 243 T-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred c-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 2 3456666666665543 2222222344444332 22 357788999999888887652 2
Q ss_pred ceEEEeCCCCeEEEEEeccc
Q 023246 218 HSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 218 ~~~~~~s~d~~i~vwd~~~~ 237 (285)
..+++.|.|-.+++|.+...
T Consensus 322 fQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eeEEEeecCCceEeeeccHH
Confidence 37899999999999998653
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=9.6e-10 Score=84.42 Aligned_cols=201 Identities=17% Similarity=0.208 Sum_probs=132.9
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
|++...-|. .+-+++.+.|.++|||--+ .++.. +.+...-..+++++.+.++...|..+. .|+
T Consensus 27 vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~w--------------psI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 27 VNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYW--------------PSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhheeccC-CCCeEEccccceeeeEEeccccccC--------------chhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 444444553 3678899999999999644 34421 112123456889999999998888875 888
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC--------------------
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-------------------- 143 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------------------- 143 (285)
+.-+.+... ..+...++.+..|... +..+-| +...+.+++.+.|.
T Consensus 92 vtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~ 156 (404)
T KOG1409|consen 92 VTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET 156 (404)
T ss_pred EEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCcccceEeec
Confidence 888877543 2222334444455544 555554 44444444444433
Q ss_pred -------------------eEEEEec--CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCC
Q 023246 144 -------------------HLFIWKK--KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPL 200 (285)
Q Consensus 144 -------------------~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~ 200 (285)
.|....+ ....++.++.+|.+.+.+++|.|....|.+|..|..+.+||+-..+ ...+
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 2222221 1233466778999999999999999999999999999999986554 4556
Q ss_pred CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 201 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
.+|...+..+.. ..-.+.+++...||.|-+|++...
T Consensus 237 ~gh~~kV~~l~~-~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 QGHNDKVQALSY-AQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccchhhhhhhhh-hhhheeeeeccCCCeEEEEeccce
Confidence 667666644432 223446889999999999998764
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.21 E-value=7.4e-10 Score=90.33 Aligned_cols=223 Identities=11% Similarity=0.055 Sum_probs=125.9
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--CCcEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVY 85 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--d~~i~ 85 (285)
.+.|+||+ +++++.+.||.|.++|+.+.+.+. .+.. ......+++|++|+++++++ ++.+.
T Consensus 41 ~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~--------------~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 41 GLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA--------------TIKV--GGNPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE--------------EEE---SSEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred EEEecCCC-CEEEEEcCCCeEEEEECCcccEEE--------------EEec--CCCcceEEEcCCCCEEEEEecCCCcee
Confidence 46789986 788888999999999999987432 2211 23467899999999888753 99999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceEeecccC-----ceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEE-E
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-L 158 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~-~ 158 (285)
++|..+. +.++.+..... ...+.++.. ++... ++++--+.+.|.+.|....+.+. .
T Consensus 104 v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 104 VIDAETL----------------EPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp EEETTT------------------EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred Eeccccc----------------cceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999887 56666654321 113666664 66666 55566667999999987655442 2
Q ss_pred EecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCC-----CCcccce-------eeccccC-CCceEEEeC
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLP-----DNAEKIM-------KANKQGR-EDHSRITLT 224 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~-----~~~~~~~-------~~~~~~~-~~~~~~~~s 224 (285)
............|+|++++++.+ ..+..|-++|...+++.... .|..+.. ...|... .....++.-
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 22234567789999999996554 56678999998876532211 1111111 0111111 111222333
Q ss_pred CCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEEe
Q 023246 225 PDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLL 264 (285)
Q Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 264 (285)
....+.+||....+.+..+.....+..+..+++...+|+-
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 3345556777777777776655444444556655555553
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.6e-08 Score=85.19 Aligned_cols=158 Identities=7% Similarity=0.004 Sum_probs=97.0
Q ss_pred CCCcceEEEEEecCCCEEEE-ec---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 59 KNNIHITGLAYSNTSELLIS-YN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+...+....|+|+|+.|+. +. ...|.+|++.++ ....+...... +....| +|+|+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-----------------~~~~l~~~~g~--~~~~~~-SpDG~ 255 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-----------------RREQITNFEGL--NGAPAW-SPDGS 255 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-----------------CEEEccCCCCC--cCCeEE-CCCCC
Confidence 45667889999999997765 32 246899999776 22223222222 445775 99998
Q ss_pred EEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccce
Q 023246 135 YVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIM 208 (285)
Q Consensus 135 ~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~ 208 (285)
.++ +.+.+| .|++||+.+++.. .+..+........|+|+++.++..+. ++ .|.++++.++....+........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~ 334 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA 334 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 876 444444 6888999877654 45555556677899999998766553 33 57777887766433321111111
Q ss_pred eeccccCCCceEEEeC-CCC--eEEEEEecccc
Q 023246 209 KANKQGREDHSRITLT-PDV--IMHVLRLQRRQ 238 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s-~d~--~i~vwd~~~~~ 238 (285)
.. .++++++.++..+ .++ .|.++|+.+++
T Consensus 335 ~~-~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 335 RP-RLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ce-EECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 11 2344445544433 333 57888887654
No 248
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.21 E-value=6.5e-10 Score=86.89 Aligned_cols=165 Identities=8% Similarity=0.038 Sum_probs=108.4
Q ss_pred ceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246 63 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 141 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 141 (285)
....+..++.++++|.+. +....+++..... +..+.+..+.....+..+..+.. +.........++
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~------------~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENP------------KGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCC------------CcceeeeEeecccCcceeeeeec-cceEEEEeecCC
Confidence 344566788889999864 7777788877652 01233444443333322333332 222223333455
Q ss_pred CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCC-CCcccceeeccccCCCce
Q 023246 142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLP-DNAEKIMKANKQGREDHS 219 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (285)
...+.+|....+ +...+.+|-+.+..++|+||+++++++..|..|++-..... .+..+. +|..-+-.+. -.++..
T Consensus 131 ~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~ 207 (390)
T KOG3914|consen 131 VYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYL 207 (390)
T ss_pred ceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCce
Confidence 566666666654 34455689999999999999999999999999999665443 344443 4666554442 234556
Q ss_pred EEEeCCCCeEEEEEecccccceeE
Q 023246 220 RITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 220 ~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
+++++.|+++++||+.+++.+..+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeecCCCCcEEEEecccCCccccc
Confidence 899999999999999999887665
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-09 Score=83.11 Aligned_cols=183 Identities=16% Similarity=0.198 Sum_probs=111.7
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc----ccc-ccccCCCCCcceEEEEEecCCC---EE
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD----TFC-PRHLIGKNNIHITGLAYSNTSE---LL 76 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~-~~~~~~~h~~~v~~i~~s~~~~---~l 76 (285)
-|.++.|...| ++||||..+|.|.++.-...... .+......+ .|. +.. -.-...|..+.|.+++. +|
T Consensus 27 iis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkS--leieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 27 IISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKS--LEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred ceeeEEeeccc-ceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhh--hhhhhhhhhceecCCCCccEEE
Confidence 46789999976 99999999999999975432210 000000000 000 000 01245788999999875 77
Q ss_pred EEecCCcEEEEEcCCCCCCCC-------------CCCCCccccCC------CCceEee-cccCceeeeeEEEecCCCcEE
Q 023246 77 ISYNDELVYLFEKNMGLGPSP-------------LSLSPEDLQKR------EEPQVYS-GHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 77 ~s~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~~-~~~~~~~i~~~~~~~~~~~~l 136 (285)
++++|.+|++|-+........ .+++...+.+. .+.+.+. .|. -.|+++.+ +.+.+.+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt--yhiNSIS~-NsD~Et~ 179 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT--YHINSISV-NSDKETF 179 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce--eEeeeeee-cCccceE
Confidence 778999999999875531110 00000001111 1111111 344 34899997 7888888
Q ss_pred EEecCCCeEEEEecCCCce---EEEEecc-----cccceEeEEcCC-CCeEEEEecCCcEEEEcCCCC
Q 023246 137 MSGSDCGHLFIWKKKGGKL---VRLMVGD-----RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~ 195 (285)
+++. |=.|.+|+++-... +-.++.+ ..-|++..|+|. .++|+-.+..|+|++.|++..
T Consensus 180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 7755 78899999874332 2223333 245889999995 455888888999999999854
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.20 E-value=1.3e-10 Score=88.72 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=116.9
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-CC
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE 82 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d~ 82 (285)
+|.-+.|..+...+|.....|+.|.+|++...+....+ ..-..++.+++|||+|+ +|.+++ +-
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---------------deg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---------------DEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---------------ccCCCcceeeeECCCcceEeeeeccee
Confidence 34557788876566777788999999999876532211 34466889999999996 444555 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec---CCCceEEEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KGGKLVRLM 159 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~---~~~~~~~~~ 159 (285)
.|.+|.+.+. ....++..+.. +..++| +++|++.+..+.-...-.+.+ ..-..+..+
T Consensus 115 riTVWSL~t~-----------------~~~~~~~pK~~--~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 115 RITVWSLNTQ-----------------KGYLLPHPKTN--VKGYAF-HPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred EEEEEEeccc-----------------eeEEecccccC--ceeEEE-CCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 9999999875 22333333333 788998 999999988775322111222 122345555
Q ss_pred ecccccceEeEEcCCCCeEEEEec--CCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
...+-..+.+.|+|||..++.-.. +..|..|. .+--+....+++.++++..|+.|+.+++.+--
T Consensus 175 ~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred CCCcccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 555667788899999887664321 12222221 11112222335556788889999888887643
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.9e-10 Score=93.66 Aligned_cols=193 Identities=10% Similarity=0.128 Sum_probs=129.1
Q ss_pred CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc-cccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCC
Q 023246 15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD-TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL 93 (285)
Q Consensus 15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~ 93 (285)
+.+-+++++.|++|++|.++..- ..+. +.|..+. ..|+.+|.++.|-.+-++++++ |+-|++||.-.+
T Consensus 746 NENSFiSASkDKTVKLWSik~Eg--------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFig- 814 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEG--------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIG- 814 (1034)
T ss_pred cccceeeccCCceEEEEEecccc--------CccccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccccc-
Confidence 45789999999999999997431 0111 1133333 7899999999999987777654 677999998665
Q ss_pred CCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEe-cCCCeEEEEecCCCceEEEEe-----cccc
Q 023246 94 GPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMV-----GDRH 164 (285)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~-----~h~~ 164 (285)
+.+..+. .+.....|.++. +-+...++.| +...+|+++|.+.++....++ +.+.
T Consensus 815 ---------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 815 ---------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred ---------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 3333221 222222255553 3344555444 789999999999888766554 3456
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEE-EEeccc
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV-LRLQRR 237 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v-wd~~~~ 237 (285)
.+.+++..|.|++++.+-..|+|.+.|.+++++ ..+.........+. .+.+..++....|.++.+ |-.-.+
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcCC
Confidence 789999999999999999999999999999984 44544333333332 223334555555666666 654433
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.9e-09 Score=87.13 Aligned_cols=145 Identities=10% Similarity=0.144 Sum_probs=118.4
Q ss_pred CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246 16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG 94 (285)
Q Consensus 16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~ 94 (285)
...++-|...|.|.+|++..++. ........|.+.|.++.++.+-..|.+ +.|..+..|+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~i-------------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-- 134 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEI-------------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-- 134 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeE-------------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--
Confidence 36888899999999999998874 222233689999999999988877877 56999999999887
Q ss_pred CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 174 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~ 174 (285)
.....+...+.. +.++++ +|++..+++++ +.|++||+++++.+..|.+|.++|.++.|--.
T Consensus 135 --------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 135 --------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred --------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 567777766644 889997 99999999887 78999999999999999999999999999776
Q ss_pred -----CCeEEE-EecCCcEEEEcCCC
Q 023246 175 -----IPMFAT-CGIEKTVKLWAPMP 194 (285)
Q Consensus 175 -----~~~l~t-~~~d~~i~iwd~~~ 194 (285)
|.++++ ...+.-+.+|-...
T Consensus 196 ~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeeeccccccceeEEEEEc
Confidence 667554 44566677886643
No 253
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.17 E-value=3.9e-09 Score=93.36 Aligned_cols=178 Identities=13% Similarity=0.050 Sum_probs=115.9
Q ss_pred ccccCCCCCcceEEEEEecCC-CEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246 53 PRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 130 (285)
Q Consensus 53 ~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 130 (285)
+.++ ..|...+..++.++.. .+|++|+ ||+|++|+...-.+.. ...+...++.... ..+.++.+ .
T Consensus 1041 VAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------~s~rS~ltys~~~--sr~~~vt~-~ 1107 (1431)
T KOG1240|consen 1041 VAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------GSARSELTYSPEG--SRVEKVTM-C 1107 (1431)
T ss_pred eehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------ceeeeeEEEeccC--CceEEEEe-c
Confidence 3444 6788888899888766 7999965 9999999997652110 0112222333223 33777876 7
Q ss_pred CCCcEEEEecCCCeEEEEecCCC--ce-----EE----------------------------------------------
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKGG--KL-----VR---------------------------------------------- 157 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~~--~~-----~~---------------------------------------------- 157 (285)
+.+..+|.++.||.|.+.++... +. .+
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 88999999999999999987641 00 00
Q ss_pred --EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC-CCcccceeeccccCCC--c-eEEEeC-CCCeE
Q 023246 158 --LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQGRED--H-SRITLT-PDVIM 229 (285)
Q Consensus 158 --~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~-~~~~~s-~d~~i 229 (285)
......+.|++++.+|.+.++++|...|.+-+||++-+.+ ..+. .+..++..+..+.... . .+.+++ ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 0001136799999999999999999999999999987653 2222 1223333333232222 3 334444 57999
Q ss_pred EEEEecccccceeE
Q 023246 230 HVLRLQRRQTLAYR 243 (285)
Q Consensus 230 ~vwd~~~~~~~~~~ 243 (285)
.+|++.++.....+
T Consensus 1268 s~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVL 1281 (1431)
T ss_pred eeeecccCcceEEE
Confidence 99999988554444
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=3.7e-08 Score=73.51 Aligned_cols=209 Identities=10% Similarity=-0.013 Sum_probs=128.7
Q ss_pred EEEEcCC----CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEecC
Q 023246 8 AIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYND 81 (285)
Q Consensus 8 ~~~~s~~----~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~d 81 (285)
.+.|-|. ...+||.|+..|...+|...+.+.. .+.. ..|...|+-+.=.-+ ...+.++.|
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h-------------~~~c-d~snn~v~~~~r~cd~~~~~~i~snd 137 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH-------------LYQC-DVSNNDVTLVKRYCDLKFPLNIASND 137 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccc-------------eeee-cccccchhhhhhhcccccceeeccCC
Confidence 3556551 2358999999999999999877521 1111 223332222211111 236666778
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ce-EE-E
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KL-VR-L 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~-~~-~ 158 (285)
.+++++++... ... +..|.....+.++++ +++++++++.++...|..|.+... +. +. .
T Consensus 138 ht~k~~~~~~~----------------s~~--~~~h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 138 HTGKTMVVSGD----------------SNK--FAVHNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred cceeEEEEecC----------------ccc--ceeeccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence 89998888755 111 122322223778887 999999999999999999987643 32 23 1
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCC--CceEEEeCCCCeEEE
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHV 231 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d~~i~v 231 (285)
.......-.+..|+.....+|++..||++.|||++.... .....+....+........ ..+++-.-.-+.+++
T Consensus 199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 223344556788999999999999999999999976532 1122233333333222322 223443344588999
Q ss_pred EEecccccceeEeeeccc
Q 023246 232 LRLQRRQTLAYRERRYNA 249 (285)
Q Consensus 232 wd~~~~~~~~~~~~~~~~ 249 (285)
.|+++....+.+...++.
T Consensus 279 ~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred EEcccCceeeEEecCccc
Confidence 999988766666444433
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=1.7e-08 Score=82.41 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=118.2
Q ss_pred cEE-EEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246 17 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG 94 (285)
Q Consensus 17 ~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~ 94 (285)
+++ ++-..++.|.+.|..+.+.+ ..+ ......-..+.|+|||+++.. +.|+.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-- 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--------------ARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-- 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--------------EEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--------------EEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence 455 45567899999999988732 222 211222345789999997776 45999999999988
Q ss_pred CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEEEEecc-------cccc
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV 166 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h-------~~~v 166 (285)
+.+.+++.... ..++++ +++|++++++. ..+.+.++|.++.+++..+... ...+
T Consensus 69 --------------~~v~~i~~G~~---~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 69 --------------KVVATIKVGGN---PRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp --------------SEEEEEE-SSE---EEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred --------------cEEEEEecCCC---cceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 67777765443 677887 99999998765 6899999999999999887643 2456
Q ss_pred eEeEEcCCCCeEEEEec-CCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceE-EEeCCCCeEEEEEecccccceeE
Q 023246 167 NQLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.++..+|....++..-. -+.|.+-|....+..... ........-....++.+++ ++...+..|-++|..+++....+
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 77888888886655544 478888787654321100 0111111112224445554 55566789999998887666554
No 256
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=1.2e-09 Score=80.88 Aligned_cols=204 Identities=15% Similarity=0.202 Sum_probs=117.0
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec------CCcEEEEEcC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN 90 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~------d~~i~iwd~~ 90 (285)
+.++++..||.+.+.+.+.-. ............-.+.+....++++.++. -+..+.|+++
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~--------------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDL--------------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred CceEecCCCceEEEEechHHH--------------hhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence 688999999999999987521 00000011011112233344555555532 3445666664
Q ss_pred CCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc-eEEEEecccccce
Q 023246 91 MGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVN 167 (285)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~ 167 (285)
.. .++. .+.....+.+++- +|. .+.+++|++||.+-+||.+... +...++.|+.++.
T Consensus 168 p~-------------------~t~~~~~~~~~~v~~l~~-hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 168 PI-------------------KTLIPSKKALDAVTALCS-HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW 227 (319)
T ss_pred cc-------------------ccccccccccccchhhhC-CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence 32 2211 1222223777775 554 5567889999999999998765 3456678999999
Q ss_pred EeEEcCCCC-eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC-CeEEEEEecccccceeEee
Q 023246 168 QLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRLQRRQTLAYRER 245 (285)
Q Consensus 168 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~i~vwd~~~~~~~~~~~~ 245 (285)
.+-|+|... .|+++++||.+..||..+..+. .. ....+.. ..+++..- ..|.+=.+.....+..-.+
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~-i~-~~~s~~s---------~WLsgD~v~s~i~i~~ll~~~~~Sinsf 296 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS-IS-NQASVIS---------SWLSGDPVKSRIEITSLLPSRSLSINSF 296 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCCceEE-ec-Ccccccc---------ccccCCcccceEeeeccccccceeeeee
Confidence 999999654 5999999999999998763321 11 1111111 11222211 2233333333333333344
Q ss_pred eccccccCCCCCcCeEEEee
Q 023246 246 RYNAADFESDEEEGETYLLG 265 (285)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~ 265 (285)
...+..+.++.+.+.+|++.
T Consensus 297 DV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 297 DVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eccCceEEeccccceEEEec
Confidence 44466677777777788764
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=1e-08 Score=85.69 Aligned_cols=163 Identities=9% Similarity=0.079 Sum_probs=95.0
Q ss_pred eEEEEcCCCCcEEEEeeCCC----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-
Q 023246 7 NAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN- 80 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~- 80 (285)
...+|||||..++++...+| .+.+|++..+... ....+...+.......+|+|||+.|+. +.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK 301 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEEECC
Confidence 45789999744444443333 3444666543100 111111222233456799999997665 32
Q ss_pred CCcEEEE--EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---CeEEEEecCCCce
Q 023246 81 DELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL 155 (285)
Q Consensus 81 d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~ 155 (285)
++...+| ++.... .....+...... +....| +|+|+.|+..+.+ ..|++||+.+++.
T Consensus 302 ~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 302 DGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 5654555 443210 122333333322 566775 9999988765542 4799999998876
Q ss_pred EEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCCCCCC
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL 200 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~ 200 (285)
.. +......+....|+|++++|+.... ...|.++++.+++...+
T Consensus 364 ~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 364 YQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred EE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 43 3333345778999999998765432 34688888877765444
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=2e-09 Score=84.16 Aligned_cols=156 Identities=14% Similarity=0.247 Sum_probs=107.4
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEE---ecCC
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LIS---YNDE 82 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s---~~d~ 82 (285)
..+..+|. +.++|.+..+....++++...... .+.+..++. ...-+++.|..+... ++. |...
T Consensus 66 ~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~-----~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD~~ 132 (390)
T KOG3914|consen 66 ALVLTSDS-GRLVAVATSSKQRAVFDYRENPKG-----AKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGDVY 132 (390)
T ss_pred cccccCCC-ceEEEEEeCCCceEEEEEecCCCc-----ceeeeEeec-------ccCcceeeeeeccceEEEEeecCCce
Confidence 34556775 589999999999888888755310 011111111 123345555554442 333 2245
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE-ec
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VG 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~ 161 (285)
.+.+|....+ ....+-+|-.. +.++++ +||+++++++..|..|++-.......+..+ .+
T Consensus 133 ~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~IesfclG 192 (390)
T KOG3914|consen 133 SFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFCLG 192 (390)
T ss_pred eeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhccc
Confidence 5566665433 33445578766 999997 999999999999999999888766666655 47
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
|...|..++.-++. .|+++|.|+++++||+++++
T Consensus 193 H~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 193 HKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred cHhheeeeeeccCc-eeeecCCCCcEEEEecccCC
Confidence 99999999987754 48999999999999998876
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=9.6e-08 Score=80.53 Aligned_cols=158 Identities=10% Similarity=0.050 Sum_probs=93.9
Q ss_pred CCCcceEEEEEecCCCEEEEe-c-C--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 59 KNNIHITGLAYSNTSELLISY-N-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s~-~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
.+...+....|+|+|+.|+.. . + ..|++||+.++ +. ..+...... .....| +|+++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg----------------~~-~~lt~~~g~--~~~~~w-SPDG~ 274 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ----------------VR-EKVTSFPGI--NGAPRF-SPDGK 274 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC----------------Ce-EEecCCCCC--cCCeeE-CCCCC
Confidence 345678899999999977663 2 3 35888998765 22 222222221 345675 99999
Q ss_pred EEEE-ecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccce
Q 023246 135 YVMS-GSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIM 208 (285)
Q Consensus 135 ~l~~-~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~ 208 (285)
.|+. .+.+| .|+++|+.+++. ..+..+.......+|+|+++.++..+. ++ .|.++++.+++...+........
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~ 353 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNL 353 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCc
Confidence 7764 45556 488889887764 344545556778899999998766553 34 46666777666433321111111
Q ss_pred eeccccCCCceEEE-eCCCC--eEEEEEecccc
Q 023246 209 KANKQGREDHSRIT-LTPDV--IMHVLRLQRRQ 238 (285)
Q Consensus 209 ~~~~~~~~~~~~~~-~s~d~--~i~vwd~~~~~ 238 (285)
... ++++++.++. ...++ .|.++|+.+++
T Consensus 354 ~~~-~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 354 GGS-ITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred Cee-ECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 222 2445444443 33344 45556766553
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.6e-08 Score=82.47 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=87.4
Q ss_pred CcceEEEEEecCCCEEEE--ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 61 NIHITGLAYSNTSELLIS--YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s--~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
.++|.++.|+|+++-++. |- -..+.|||++.. .+..|. .++ =+++-| +|.|++++
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~ 327 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIIL 327 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEE
Confidence 679999999999986655 32 788999999653 444443 332 445655 99999998
Q ss_pred EecC---CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCC
Q 023246 138 SGSD---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 197 (285)
Q Consensus 138 ~~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 197 (285)
.++- -|.|-+||+.+.+++..+..-. -+-..|+|+|++|+|+.. |..++||+..+..+
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 8664 6889999999999998887643 445799999999998874 67899999987765
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=1.9e-08 Score=75.90 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=88.4
Q ss_pred eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246 64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 142 (285)
Q Consensus 64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 142 (285)
..++.|++.+..++++ ++|.+.+-+.... ..+..+.++.|..+ .....|...+.+.+.+|++|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee--------------eeeeccccccccee--eeeeecccCCCceEEecCCC
Confidence 4577888888877776 5888885554433 11344577888866 77777744566899999999
Q ss_pred CeEEEEecC-CCceEEE-EecccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC
Q 023246 143 GHLFIWKKK-GGKLVRL-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 143 g~v~vwd~~-~~~~~~~-~~~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.+..||++ .++.+.. .+.|...|.++.-+|. ..+++||+.|..|++||.+...
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 999999998 4555544 5678899999988874 5579999999999999998543
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.06 E-value=5e-10 Score=60.00 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.8
Q ss_pred CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246 153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 191 (285)
Q Consensus 153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 191 (285)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.2e-07 Score=87.36 Aligned_cols=215 Identities=10% Similarity=0.124 Sum_probs=124.6
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccC-CCCCcceEEEEEec-CCCEEEE-ecCC
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSN-TSELLIS-YNDE 82 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~-~~~~l~s-~~d~ 82 (285)
-..+++++++..++++-...+.|+++|+.++..............+.-.... ...-.....++|+| ++.++++ ..++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 3578899875334444455678999998765421110000000000000000 00012346899999 4556666 4589
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-------------cCceeeeeEEEecCCCc-EEEEecCCCeEEEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------------RNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIW 148 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vw 148 (285)
.|++||...+. +..+.+. ........+++ +|+++ .+++-+.++.|++|
T Consensus 706 ~I~v~d~~~g~-----------------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 706 QIWEYNISDGV-----------------TRVFSGDGYERNLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred eEEEEECCCCe-----------------EEEEecCCccccCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEEEE
Confidence 99999987651 1111100 00012567887 88887 45566678999999
Q ss_pred ecCCCceEEEEec---------------------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCc---
Q 023246 149 KKKGGKLVRLMVG---------------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--- 204 (285)
Q Consensus 149 d~~~~~~~~~~~~---------------------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--- 204 (285)
|+.++.......+ .-.....++++++|..+++-..++.|++||+.++.+..+.+..
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 9987653211100 0113468899999998888888999999999876543322111
Q ss_pred -----------ccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 205 -----------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 205 -----------~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.....+. ...+++++++-+.++.|++||+.++..
T Consensus 848 ~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0111111 123456788888999999999988754
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=3.4e-08 Score=74.54 Aligned_cols=192 Identities=10% Similarity=0.084 Sum_probs=129.4
Q ss_pred cEEEEeeC------------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec---CCC-EEEEe-
Q 023246 17 NYFAVGGS------------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSE-LLISY- 79 (285)
Q Consensus 17 ~~l~tg~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~~-~l~s~- 79 (285)
++||+|++ .|.+.+|++...+... ...+...-+..+..+.|.. +|. .++-.
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~------------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~ 92 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP------------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH 92 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCc------------cceeeeecccccceeeeeeccCCccceeeecc
Confidence 47777753 3677888887665432 1111122344566777764 344 23333
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce----eeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ----TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 155 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 155 (285)
..|.|.++..... .....+++-.... ...++.| ++.+..++++..+|.+.+-+......
T Consensus 93 a~G~i~~~r~~~~----------------~ss~~L~~ls~~ki~~~~~lslD~-~~~~~~i~vs~s~G~~~~v~~t~~~l 155 (339)
T KOG0280|consen 93 ARGQIQLYRNDED----------------ESSVHLRGLSSKKISVVEALSLDI-STSGTKIFVSDSRGSISGVYETEMVL 155 (339)
T ss_pred ccceEEEEeeccc----------------eeeeeecccchhhhhheeeeEEEe-eccCceEEEEcCCCcEEEEecceeee
Confidence 4888988887654 2222232221110 1345665 88899999999999998655444443
Q ss_pred --EEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246 156 --VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM 229 (285)
Q Consensus 156 --~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i 229 (285)
+..++.|.-++.-.+|+...+ .+.+|+.|+.+..||++..+ ....+.|...+.++....+...++++|+.|-.|
T Consensus 156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence 347889999999999976544 68899999999999998433 233556888888887777778899999999999
Q ss_pred EEEEeccc
Q 023246 230 HVLRLQRR 237 (285)
Q Consensus 230 ~vwd~~~~ 237 (285)
++||.++-
T Consensus 236 ~~~DtRnm 243 (339)
T KOG0280|consen 236 RVLDTRNM 243 (339)
T ss_pred eeeehhcc
Confidence 99999853
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=83.57 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=113.5
Q ss_pred EEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-
Q 023246 75 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG- 153 (285)
Q Consensus 75 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~- 153 (285)
.+++|.+..|-+-++.++ ..+.|. .... |.++.| ...++++..|...|.|..+|++.+
T Consensus 227 hfs~G~sqqv~L~nvetg-----------------~~qsf~-sksD--VfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETG-----------------HQQSFQ-SKSD--VFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eecccccceeEEEEeecc-----------------cccccc-cchh--HHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence 344567888888888876 444454 3333 888887 777899999999999999999865
Q ss_pred ----ceEEEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeecc-ccCCCceEEEe
Q 023246 154 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANK-QGREDHSRITL 223 (285)
Q Consensus 154 ----~~~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 223 (285)
.+...+. |.+.|+++..-. ++++|++.+.+|+|++||++.-+ +.+..+|....-.+-. ...+.+.++++
T Consensus 286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 3444444 889999998776 77889999999999999997543 4666666654322211 22356688999
Q ss_pred CCCCeEEEEEecccccceeEeeeccc
Q 023246 224 TPDVIMHVLRLQRRQTLAYRERRYNA 249 (285)
Q Consensus 224 s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (285)
+.|-..++|.+..++.+..+.+....
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSA 390 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCcc
Confidence 99999999999999988777655433
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=83.87 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=98.6
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-c
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~ 80 (285)
+..|.++.|...+ +++..|+..|.|..+|++.+..-..+ +... -.|...|+++..-. ++++|.++ -
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~---------~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGW---------CAQR--LYHDSSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCc---------ceEE--EEcCcchhhhhhhccccceEeeccC
Confidence 5567788888854 89999999999999999976321111 2222 35788899988766 56666664 5
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
+|+|.+||.+... ..+.+..+.+|.+...-.-+.. .+....++++++|...++|.++.+.++.+++
T Consensus 320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999999998761 1123888999987533333333 6777889999999999999999999998886
Q ss_pred cc
Q 023246 161 GD 162 (285)
Q Consensus 161 ~h 162 (285)
..
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.98 E-value=1.7e-07 Score=75.44 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=116.7
Q ss_pred EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC-cEEEEE
Q 023246 11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-LVYLFE 88 (285)
Q Consensus 11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~-~i~iwd 88 (285)
|++-++++++..+. |+..|.+.-.+-. +.-+|.+.|.-..+..+++-++.| .|| .+-|+|
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 45545688888875 6777766554421 114677789888888888866666 476 899999
Q ss_pred cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceE
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 168 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 168 (285)
..++ .++.+...-.. |.++.. +++|++++.+.+...+.+.|+.+++....-+...+-|+.
T Consensus 389 ~~~~-----------------e~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItd 448 (668)
T COG4946 389 KDGG-----------------EVKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITD 448 (668)
T ss_pred cCCc-----------------eEEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEE
Confidence 9887 55566655544 999996 999999999999999999999999876655666788999
Q ss_pred eEEcCCCCeEEEEecCC----cEEEEcCCCCCCC
Q 023246 169 LEPHPHIPMFATCGIEK----TVKLWAPMPTDFP 198 (285)
Q Consensus 169 ~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~ 198 (285)
.+|||+++++|-+=-+| .|+++|+.++++.
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 99999999999876665 6899999988753
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=5.6e-07 Score=75.00 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=97.1
Q ss_pred ceeEEEEcCCCCcEEEEeeC---CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 5 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
.+..-.|+|++..+++..+. +..|.++|+.+++.. .+ ....+......|+|||+.++. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~l-t~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KI-ASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence 55678999987444554433 356888888877521 11 112344566789999985554 22
Q ss_pred ---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCCc
Q 023246 81 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK 154 (285)
Q Consensus 81 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~~ 154 (285)
+..|.++++.++ ....+..+... .....| +|+|+.|+-.+. .+ .|+++|+.+++
T Consensus 253 ~~g~~~Iy~~dl~~g-----------------~~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 253 PKGQPDIYLYDTNTK-----------------TLTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cCCCcEEEEEECCCC-----------------cEEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 467888888765 23334333321 223454 999987766553 22 68888998776
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecC---------CcEEEEcCCCCCCCCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLP 201 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~ 201 (285)
....... .. ....|+|+|++++..... ..|.+.|+.++....+.
T Consensus 313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence 6433321 11 224899999997766543 26778888777654443
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.2e-07 Score=87.32 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=111.0
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCCcE
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELV 84 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~~i 84 (285)
..++|+|+++.++++.+.++.|++||..++........ ...............-.....|+++|++. ++++. .++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC-CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 46899996667888888899999999877643211000 00000000000001123467899999998 44443 48999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccC------ceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
++||+.++....... ...... .....+..... -....++++ +++|+.+++-..++.|++||..++.....
T Consensus 765 rv~D~~tg~~~~~~g--g~~~~~-~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 765 RALDLKTGGSRLLAG--GDPTFS-DNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEECCCCcEEEEEe--cccccC-cccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 999987652000000 000000 00000000000 011457886 89999889989999999999987765432
Q ss_pred Ee-------------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 159 MV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 159 ~~-------------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
.. ++-.....++++++|+.+++-+.++.|++||++++..
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 21 1123577899999999888888999999999987653
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=99.54 Aligned_cols=146 Identities=14% Similarity=0.240 Sum_probs=114.9
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e--c
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--N 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~--~ 80 (285)
.+|+.+.|+.+| +.+..+..||.+.+|.+.. .+......|........|-. ..+++ | .
T Consensus 2252 s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred chhhhhhhcccC-CceeeeccCCceeecccCC----------------cceeccccCCccccceeeee--hhhhccccCC
Confidence 578889999976 8999999999999999872 22222377888888888876 45555 3 2
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
++.+.+||..... ....++ ..|... +++++| .|..+.+++|+.+|.|++||++..++.+++
T Consensus 2313 d~~n~~lwDtl~~~-------------~~s~v~--~~H~~g--aT~l~~-~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPP-------------MNSLVH--TCHDGG--ATVLAY-APKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred CCCcccchhcccCc-------------ccceee--eecCCC--ceEEEE-cCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 7889999986541 012333 678766 999998 999999999999999999999988888776
Q ss_pred ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+. ++ ...+|++++..|.++||++....
T Consensus 2375 ~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2375 QA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred hh---------hh-hhheeeccCcccceEEEEccccc
Confidence 64 44 56789999999999999997654
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=2.7e-06 Score=69.48 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=130.3
Q ss_pred eEEEEcCCCCcEEEEeeC----CCcEEEEEccCC--cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 7 NAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
.-++++|++ .+|++... ++.|..|.+... ++. ..... .........++++|++++|+++
T Consensus 40 s~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 40 SWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp CCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEEEE
Confidence 457889976 66666655 578999998754 321 11111 1123455679999999988886
Q ss_pred -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee--c------ccCceeeeeEEEecCCCcEEEEec-CCCeEEEEe
Q 023246 80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWK 149 (285)
Q Consensus 80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd 149 (285)
.++.|.++++..... +. .....+. + .+......++.+ +|+++++++.. ....|++|+
T Consensus 106 y~~g~v~v~~l~~~g~----------l~--~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 106 YGGGSVSVFPLDDDGS----------LG--EVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp TTTTEEEEEEECTTSE----------EE--EEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEE
T ss_pred ccCCeEEEEEccCCcc----------cc--eeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCEEEEEE
Confidence 399999999976310 00 0111111 0 011123677887 99999887753 355799999
Q ss_pred cCCCc--eE--EEEe-cccccceEeEEcCCCCeEEE-EecCCcEEEEcCC--CCCCC------CCCC-Cc-c-cceeecc
Q 023246 150 KKGGK--LV--RLMV-GDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPM--PTDFP------PLPD-NA-E-KIMKANK 212 (285)
Q Consensus 150 ~~~~~--~~--~~~~-~h~~~v~~~~~~p~~~~l~t-~~~d~~i~iwd~~--~~~~~------~~~~-~~-~-~~~~~~~ 212 (285)
+.... +. ..+. ........++|+|+++++.. ...+++|.++++. .+.+. .+.. .. . ..-.+ .
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~ 251 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI-A 251 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE-E
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE-E
Confidence 87654 32 2222 23456789999999998544 4567889999886 33211 1111 00 0 11111 1
Q ss_pred ccCCCc-eEEEeCCCCeEEEEEecc-cccceeEeeecc----ccccCCCCCcCeEEEeecCCCCC
Q 023246 213 QGREDH-SRITLTPDVIMHVLRLQR-RQTLAYRERRYN----AADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 213 ~~~~~~-~~~~~s~d~~i~vwd~~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
..++++ ++++-...+.|.+|++.. ...+..+..-+. ...+....+...+|+.+..++..
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence 233444 455556678999999943 223333322111 23344444555566655555443
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=1e-07 Score=73.58 Aligned_cols=176 Identities=14% Similarity=0.233 Sum_probs=126.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~ 82 (285)
.++++++++++ ...|++|-..|++.-+.+...- ...........|..++..+-|+...+.+++. .|.
T Consensus 69 ~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedf-----------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 69 SPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDF-----------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred CCceEeeeecc-ceEEEEEEecceEEEEEhhhhh-----------hhcchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence 36788999996 4899999999999988775321 0002222236788899999998887777774 466
Q ss_pred cEEEEEcCCCCCCCCCCCCCcc-------------------------ccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPED-------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
.+.-.-.+.+...+...+.... ......+.++.+|... +.+++| .+..+.+.
T Consensus 137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~Lf 213 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRLLF 213 (404)
T ss_pred ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcEEE
Confidence 6544444444322211111100 2233566778888877 999995 99999999
Q ss_pred EecCCCeEEEEecCCCc-eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 138 SGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 138 ~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
+|..|..+.+||+--.+ ....+.+|...|..+..-+.-+.+.+++.||.|.+|+.+.
T Consensus 214 Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 214 SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999986443 4567788999999998888888899999999999999754
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=5.1e-07 Score=68.27 Aligned_cols=168 Identities=16% Similarity=0.242 Sum_probs=103.6
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-------CEEEEe
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLISY 79 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-------~~l~s~ 79 (285)
.-++||||+ .+||.+...|+|+++|+...++. .+... .. ....-...|..+.|.+.. ++|+..
T Consensus 47 Rkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf-~I~p~---~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 47 RKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF-VIPPA---MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred eEEEECCCC-cEEEEEcCCCeEEEEecccceeE-EcCcc---cc-----cCCccccceeeeEeeccccccccceeEEEEe
Confidence 358999986 89999999999999999854432 11100 00 112234567777776533 356666
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEecC----CC-------eEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSD----CG-------HLFI 147 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~----dg-------~v~v 147 (285)
-.|.++-|-+..+. .+..+..+.|.... .+..|.++.| +|..++|+.|+. ++ -+..
T Consensus 117 Y~G~L~Sy~vs~gt-----------~q~y~e~hsfsf~~~yp~Gi~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~GLta 184 (282)
T PF15492_consen 117 YRGQLRSYLVSVGT-----------NQGYQENHSFSFSSHYPHGINSAVY-HPKHRLLLVGGCEQNQDGMSKASSCGLTA 184 (282)
T ss_pred ccceeeeEEEEccc-----------CCcceeeEEEEecccCCCceeEEEE-cCCCCEEEEeccCCCCCccccccccCceE
Confidence 78777766653220 00112334433211 1123999997 888888777653 11 2556
Q ss_pred EecCCCceEE-----------------------E---E---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 148 WKKKGGKLVR-----------------------L---M---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 148 wd~~~~~~~~-----------------------~---~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
|.+-++.+-. . + ......|..|..+|+|..||+...+|.|.+|++-.-+
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 6543221100 0 0 1124678999999999999999999999999986544
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.1e-06 Score=72.04 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=126.0
Q ss_pred CccceeEEEEcCCCC-cEEEE-----eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-
Q 023246 2 NSIRLNAIVIDPRNP-NYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE- 74 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~-~~l~t-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~- 74 (285)
...+|+.+.+||... ..+|+ ++.-..|+||.+....... ++ ..+.++ ...=-.+.|++-|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~------~~---a~ksFF---kadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ------PV---ANKSFF---KADKVQMKWNKLGTA 231 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc------hh---hhcccc---ccceeEEEeccCCce
Confidence 456788899999522 34443 3455689999887322110 00 111111 11223567888776
Q ss_pred E--EEEec-CC---------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEE--e
Q 023246 75 L--LISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMS--G 139 (285)
Q Consensus 75 ~--l~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~--~ 139 (285)
+ |++.. |. ++++.+++.. . ..+... .++ |.++.| +++++.++. |
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s--~~V~L~k~GP--Vhdv~W-~~s~~EF~VvyG 290 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGE----------------S--VSVPLLKEGP--VHDVTW-SPSGREFAVVYG 290 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCc----------------e--EEEecCCCCC--ceEEEE-CCCCCEEEEEEe
Confidence 2 23332 44 4888888732 1 222322 344 999996 999976654 6
Q ss_pred cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCCC-CCCCCCcccceeeccccC
Q 023246 140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR 215 (285)
Q Consensus 140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (285)
-.=..+.+||++ ++++..+. .++=+++-|+|.|++++.+|. .|.|-+||....+. ..+..... ....+.+
T Consensus 291 fMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t---t~~eW~P 364 (566)
T KOG2315|consen 291 FMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT---TVFEWSP 364 (566)
T ss_pred cccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc---eEEEEcC
Confidence 667889999998 88887775 577888999999999888885 47899999987654 33322222 2223567
Q ss_pred CCceEEEeCC------CCeEEEEEeccc
Q 023246 216 EDHSRITLTP------DVIMHVLRLQRR 237 (285)
Q Consensus 216 ~~~~~~~~s~------d~~i~vwd~~~~ 237 (285)
+++++++++. |..++||+....
T Consensus 365 dGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEecCc
Confidence 7778777655 588999997654
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=3.2e-08 Score=73.51 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=122.9
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV 84 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i 84 (285)
|..+.+.-+ ..|+++..++.+......++.+...++-...+..+ ..+..|+++-.+-+.+-.+.-++++ .||.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~---~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPF---KVLAKNSEIDPNDACTMTDNRVCIGYADGSL 113 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCce---eeeeccCCCCCcccccccCCceEecCCCceE
Confidence 667777774 68999999888888877666554443322222211 1112333333333333344566664 59999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-----CCeEEEEecCCCceEEEE
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~ 159 (285)
.+++.+.-. ...+........ ..+.++ -..++++.++.- -+..+.|+++..+.+..-
T Consensus 114 ~v~s~~~~~---------------~~~~~i~~~~~~--~as~~~-~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 114 AVFSTDKDL---------------ALMSRIPSIHSG--SASRKI-CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred EEEechHHH---------------hhhhhccccccc--ccccce-eecccEEecCCcceEeeccceeeeccccccccccc
Confidence 999986431 111111111111 122222 234555554432 234556666543322211
Q ss_pred ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
......|.+++-+|..+. +++|+.||.+.+||.+... ...+..|..++..+..-......+++.+.||.+..||..+
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 112244999999997666 6777789999999998764 2345667777777766666777899999999999999664
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=4.9e-06 Score=67.96 Aligned_cols=212 Identities=10% Similarity=0.169 Sum_probs=117.8
Q ss_pred eEEEEcCCCCcEEEEee-CCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--cCC
Q 023246 7 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE 82 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--~d~ 82 (285)
..++++|++ .+|+++. .+|+|.++++.. +........... ....+. ....-.....++.|+|+++++++. ...
T Consensus 90 ~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~-~g~g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 90 CHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH-EGSGPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp EEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEES-EEEESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred EEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeeccc-CCCCCc-ccccccccceeEEECCCCCEEEEEecCCC
Confidence 358899986 5655555 689999999986 332111000000 000000 001223457789999999977774 366
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecC--CCce--EE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKK--GGKL--VR 157 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~--~~~~--~~ 157 (285)
.|.+|++..... .......+..... .....+.| +|++++++. .-.++.|.++++. +++. +.
T Consensus 167 ~v~~~~~~~~~~------------~l~~~~~~~~~~G-~GPRh~~f-~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 167 RVYVYDIDDDTG------------KLTPVDSIKVPPG-SGPRHLAF-SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EEEEEEE-TTS-------------TEEEEEEEECSTT-SSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEeCCCc------------eEEEeeccccccC-CCCcEEEE-cCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 899999976510 0011222322221 23678997 999988855 4568889999988 4432 22
Q ss_pred EEec----c--cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCC--CCCCC---CCCCcccceeeccccCCCc-eEEEeC
Q 023246 158 LMVG----D--RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP---LPDNAEKIMKANKQGREDH-SRITLT 224 (285)
Q Consensus 158 ~~~~----h--~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~s 224 (285)
.+.. . ......++++|++++|.++. ....|.+|++.. +.+.. +.........+.. .++++ ++++.-
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-s~~g~~l~Va~~ 311 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-SPDGRYLYVANQ 311 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE--TTSSEEEEEET
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-eCCCCEEEEEec
Confidence 2221 1 12577899999999966655 567899999843 34322 1111111222222 33444 445556
Q ss_pred CCCeEEEEEecc
Q 023246 225 PDVIMHVLRLQR 236 (285)
Q Consensus 225 ~d~~i~vwd~~~ 236 (285)
.++.|.+|++..
T Consensus 312 ~s~~v~vf~~d~ 323 (345)
T PF10282_consen 312 DSNTVSVFDIDP 323 (345)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCeEEEEEEeC
Confidence 778999998863
No 277
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.84 E-value=3.5e-06 Score=65.48 Aligned_cols=217 Identities=11% Similarity=0.048 Sum_probs=129.2
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-cCCCEEEEecCCcEEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL 86 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~d~~i~i 86 (285)
+..|.+..+.++++-...+.|..|+..+++.. ... ......+++. +++.++++.. +.+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~~~----~~~~~G~~~~~~~g~l~v~~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------VID----LPGPNGMAFDRPDGRLYVADS-GGIAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------EEE----SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------EEe----cCCCceEEEEccCCEEEEEEc-CceEE
Confidence 57899855578888878999999999877521 111 1126677887 6666666554 44555
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeec--cc-CceeeeeEEEecCCCcEEEEecCC--------CeEEEEecCCCce
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL 155 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~vwd~~~~~~ 155 (285)
+|..++ +....+.. .. .....+.+++ +++|++.++.... |.|+.++.. ++.
T Consensus 65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 688765 22222221 11 2244889997 9999987775543 668888887 554
Q ss_pred EEEEecccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCC--C------CCCCCCcccceeeccccCCCceEEEeCCC
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTD--F------PPLPDNAEKIMKANKQGREDHSRITLTPD 226 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 226 (285)
..... .-...+.++|+|+++.|. +-+..+.|..+++.... + ..+..... ...-.....++.+.++....
T Consensus 127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETT
T ss_pred EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCC
Confidence 43333 356678999999999765 55677888888885322 1 11111110 01111123345577777788
Q ss_pred CeEEEEEecccccceeEeee-ccccccCC-CCCcCeEEEe
Q 023246 227 VIMHVLRLQRRQTLAYRERR-YNAADFES-DEEEGETYLL 264 (285)
Q Consensus 227 ~~i~vwd~~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~ 264 (285)
+.|.+++-+ ++.+..+... +....++. +++.+.+|+.
T Consensus 205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 999999866 6666555433 33444444 3455667764
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=4e-08 Score=74.89 Aligned_cols=182 Identities=16% Similarity=0.209 Sum_probs=116.2
Q ss_pred ceeEEEEcC-CCCcEEEEeeCCCcEEEEEccCCcccC--------CcCC--CCCccc-----------------cccccc
Q 023246 5 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYS--------PISS--DTPVDT-----------------FCPRHL 56 (285)
Q Consensus 5 ~v~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~~~~~~--------~~~~--~~~~~~-----------------~~~~~~ 56 (285)
+|+.+.|-. .+...++..+.|.+|++|.+....+.. .+.. .+|+.+ ..+..+
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 567788754 444677888899999999987552110 0000 111111 112222
Q ss_pred -CCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc---eeeeeEEEecC-
Q 023246 57 -IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGP- 131 (285)
Q Consensus 57 -~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~- 131 (285)
...|...+.++.|..+.+.+.++.|-.|.+|++.... .++. +..++.|... ..|++..| +|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----~sFn---------IVDiKP~nmeeLteVItSaeF-hp~ 232 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID----GSFN---------IVDIKPHNMEELTEVITSAEF-HPE 232 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccC----CceE---------EEeccCccHHHHHHHHhhccc-CHh
Confidence 2578889999999999999999999999999997542 1111 1112222211 12677777 54
Q ss_pred CCcEEEEecCCCeEEEEecCCCce------EEE----------EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 132 NDEYVMSGSDCGHLFIWKKKGGKL------VRL----------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 132 ~~~~l~~~~~dg~v~vwd~~~~~~------~~~----------~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
..+.+.-.+..|.|++-|++...+ +.. +.+-...|..+.|+|+|+++++-.. -++++||.+..
T Consensus 233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 456677778899999999984332 111 1122356888999999999987764 58999998755
Q ss_pred C--CCCCC
Q 023246 196 D--FPPLP 201 (285)
Q Consensus 196 ~--~~~~~ 201 (285)
+ +.+++
T Consensus 312 k~pikTi~ 319 (460)
T COG5170 312 KNPIKTIP 319 (460)
T ss_pred cCCceeec
Confidence 4 44443
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=3e-08 Score=83.74 Aligned_cols=205 Identities=11% Similarity=0.139 Sum_probs=136.4
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC---EEEEe
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY 79 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~---~l~s~ 79 (285)
.+++.++.++|-+ +-+|.++.-| +.+-|+...-. .+..+..-..-.|-.+.|+|... .+++.
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~-------------ppr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFT-------------PPRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCC-------------CceeeeccCcchhcceecccCCCCceeEEec
Confidence 4577889999975 6666666654 34556553320 11111111233466788988653 56666
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEE
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 158 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~ 158 (285)
+...-.+|++.... .....|..|.....|+.+.|.......+++++.|-.+..||+++.. ++..
T Consensus 89 s~qkaiiwnlA~ss---------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSS---------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred CcchhhhhhhhcCC---------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 77777889987542 2223333333334499999743455678999999999999998754 5666
Q ss_pred EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
+..-......|+|+.....++..+..+.|++||++.+. +..+++|...+..+.....-...+++.+.|++|+.||...
T Consensus 154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 65545667889999876666666677889999998664 4667777766655544443444678899999999999765
Q ss_pred c
Q 023246 237 R 237 (285)
Q Consensus 237 ~ 237 (285)
.
T Consensus 234 S 234 (1081)
T KOG0309|consen 234 S 234 (1081)
T ss_pred c
Confidence 4
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=5e-06 Score=67.29 Aligned_cols=225 Identities=11% Similarity=0.066 Sum_probs=139.0
Q ss_pred cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc-cccccccCCCCCcceEEEE-Eec-CCCEEEEecCCcEEEEE
Q 023246 12 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD-TFCPRHLIGKNNIHITGLA-YSN-TSELLISYNDELVYLFE 88 (285)
Q Consensus 12 s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~i~-~s~-~~~~l~s~~d~~i~iwd 88 (285)
+.||.++++ +.-|.|.+||..+.++.+. +..-|+. .-... ..-.+..-+. |++ +|.+++.-+-|+..|.+
T Consensus 275 nsDGkrIvF--q~~GdIylydP~td~lekl-dI~lpl~rk~k~~----k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVF--QNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQP----KFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred CCCCcEEEE--ecCCcEEEeCCCcCcceee-ecCCccccccccc----cccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 345534444 3458899999887654321 1111111 00000 0011111122 443 57888888888888888
Q ss_pred cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEecccccce
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVN 167 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~h~~~v~ 167 (285)
...+ ..++ -++... |.-..+ ..+++-++.|..|| .+-++|.++++. ..+...-+.|.
T Consensus 348 ~~~~----------------~~iq--v~~~~~--VrY~r~-~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~ 405 (668)
T COG4946 348 PWDG----------------YSIQ--VGKKGG--VRYRRI-QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIE 405 (668)
T ss_pred CCCC----------------eeEE--cCCCCc--eEEEEE-ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceE
Confidence 7654 1222 234444 666665 66777888899999 899999997654 44555678999
Q ss_pred EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC----CeEEEEEecccccceeE
Q 023246 168 QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~i~vwd~~~~~~~~~~ 243 (285)
++..+|+|++++.+.....+.+.|+.++.++.+.......+.-..+.++++.++-+-++ ..|+++|+..++.....
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999999999988899999999998766654444444444446677777666666 46899999887655443
Q ss_pred eeeccccccCCCCCcCeEEEee
Q 023246 244 ERRYNAADFESDEEEGETYLLG 265 (285)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~ 265 (285)
.....--.-+.+++...+|.+.
T Consensus 486 T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCcccccCcccCCCCcEEEEEe
Confidence 2222122223344444455553
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.4e-05 Score=62.52 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=103.4
Q ss_pred ceeEEEEcCCCCcEEEEeeC---CCcEEEEEccC--CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246 5 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 79 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 79 (285)
..+=++|+|++ +.|+++-. +|.|..|.+.. |++.. .-..... ..+...++++++|++++++
T Consensus 41 nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~~~~--g~~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 41 NPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQTLP--GSPPCYVSVDEDGRFVFVA 106 (346)
T ss_pred CCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eeccccC--CCCCeEEEECCCCCEEEEE
Confidence 34568999975 67777754 47788887764 44211 1111112 2233789999999998886
Q ss_pred c--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc--------eeeeeEEEecCCCcEEEEecC-CCeEEEE
Q 023246 80 N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSD-CGHLFIW 148 (285)
Q Consensus 80 ~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~l~~~~~-dg~v~vw 148 (285)
+ .|.|.++-++...... ..+..+. |... ..+....+ .|+++++++..- --.|.+|
T Consensus 107 nY~~g~v~v~p~~~dG~l~------------~~v~~~~-h~g~~p~~rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQ------------PVVQVVK-HTGSGPHERQESPHVHSANF-TPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EccCceEEEEEcccCCccc------------cceeeee-cCCCCCCccccCCccceeee-CCCCCEEEEeecCCceEEEE
Confidence 4 8999999997641110 0111111 1110 11455665 999999988654 4468999
Q ss_pred ecCCCceEEEEe---cccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCC
Q 023246 149 KKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP 194 (285)
Q Consensus 149 d~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~ 194 (285)
++..|++...-. ........|+|+|++++.... -.+++|-+|..+.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 999876532211 234677899999999995544 4789999998765
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.76 E-value=7.7e-06 Score=74.50 Aligned_cols=213 Identities=11% Similarity=0.106 Sum_probs=131.0
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEE----EccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 78 (285)
...|.++.|-++. ..++.+..+|.|.+. +...... .....-...|.+++||||+++|+.
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~----------------E~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI----------------EIVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee----------------EEEEEEcCcEEEEEECCCcCEEEE
Confidence 4678899999975 788889999999999 4443321 111233668999999999998877
Q ss_pred e-cCCcEEEEEcCCCC---------------------CCCCCCCCCccc-------cCCCCc----eEeecccCceeeee
Q 023246 79 Y-NDELVYLFEKNMGL---------------------GPSPLSLSPEDL-------QKREEP----QVYSGHRNSQTVKG 125 (285)
Q Consensus 79 ~-~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~i~~ 125 (285)
. .++++.+.+..-.. +.....++...- +..... ..+. ..+. -..
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~ 214 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR 214 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence 4 57888777543111 000001110000 000000 1111 2222 456
Q ss_pred EEEecCCCcEEEEecC------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCC
Q 023246 126 VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD 196 (285)
Q Consensus 126 ~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~ 196 (285)
++| -.||+|+++.+- -..++||+.+ |++..+.+.-.+--.+++|.|.|+++|+... ...|.+|.-++.+
T Consensus 215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 774 999999988764 3579999987 7766555544455567899999999998874 3468888866544
Q ss_pred CC----CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 197 FP----PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 197 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
-. .+......+..+.| ..++..++....|. |.+|-..+.+-
T Consensus 293 hgeF~l~~~~~~~~v~~l~W-n~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAW-NSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred eeeEecCCCCCCceeeEEEE-CCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 21 22233445556655 55555555544444 99998877543
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.7e-05 Score=62.03 Aligned_cols=200 Identities=10% Similarity=0.161 Sum_probs=119.4
Q ss_pred eEEEEcCCCCcEEEEee-CCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCc----------ceEEEEEecCCC
Q 023246 7 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNI----------HITGLAYSNTSE 74 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~v~~i~~s~~~~ 74 (285)
.-+++++++ ++++++. .-|.|.++-+.. |.+..... . ..|.+ .+....+.|+++
T Consensus 92 ~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 92 CYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQ------------V-VKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred eEEEECCCC-CEEEEEEccCceEEEEEcccCCcccccee------------e-eecCCCCCCccccCCccceeeeCCCCC
Confidence 568899986 6666665 468999999975 43221111 0 12222 277899999999
Q ss_pred EEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecC
Q 023246 75 LLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKK 151 (285)
Q Consensus 75 ~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~ 151 (285)
+|++.. -..|.+|++..+. +... ....++ .. ..-..+.| +|++++.....+ +++|.+|..+
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~-----------L~~~-~~~~v~-~G--~GPRHi~F-Hpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGK-----------LTPA-DPAEVK-PG--AGPRHIVF-HPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred EEEEeecCCceEEEEEcccCc-----------cccc-cccccC-CC--CCcceEEE-cCCCcEEEEEeccCCEEEEEEEc
Confidence 988854 5679999998651 1111 111121 12 22678998 999999977665 8999999987
Q ss_pred CC-ceEEEEec---------ccccceEeEEcCCCCeEEEEec-CCcEEEEcCC--CCCCC---CCCCCcccceeeccccC
Q 023246 152 GG-KLVRLMVG---------DRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM--PTDFP---PLPDNAEKIMKANKQGR 215 (285)
Q Consensus 152 ~~-~~~~~~~~---------h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~--~~~~~---~~~~~~~~~~~~~~~~~ 215 (285)
.. ..+..++. ......++.++|+|++|..+.. ...|-++.+. ++++. ....+.......+. .+
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i-~~ 300 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI-NP 300 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-CC
Confidence 63 23333321 1345678899999999887752 3367777653 33321 11111111111211 22
Q ss_pred CCceEEEeCC-CCeEEEEEeccc
Q 023246 216 EDHSRITLTP-DVIMHVLRLQRR 237 (285)
Q Consensus 216 ~~~~~~~~s~-d~~i~vwd~~~~ 237 (285)
.+++++++.. +..|.+|.+...
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCC
Confidence 3445555544 477888876653
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.73 E-value=1.9e-05 Score=63.63 Aligned_cols=230 Identities=11% Similarity=0.001 Sum_probs=120.3
Q ss_pred EcCCCCcEEEEee---------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--
Q 023246 11 IDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-- 79 (285)
Q Consensus 11 ~s~~~~~~l~tg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-- 79 (285)
++|++..+.++.+ .+..|.+||..+.+....+..+... ... .......++++|+|++|...
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-----~~~---~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-----RFL---VGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-----hhh---ccCccceEEECCCCCEEEEecC
Confidence 8998755666666 6899999999999865444332210 000 12234478999999977764
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceE-
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLV- 156 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~- 156 (285)
+ +..|.+.|+.++ +.+..+...... .-.. ..+..+++- +.||......+. +++..
T Consensus 125 ~p~~~V~VvD~~~~----------------kvv~ei~vp~~~---~vy~--t~e~~~~~~-~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 125 SPSPAVGVVDLEGK----------------AFVRMMDVPDCY---HIFP--TANDTFFMH-CRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CCCCEEEEEECCCC----------------cEEEEEeCCCCc---EEEE--ecCCccEEE-eecCceEEEEecCCCceEE
Confidence 3 899999999987 555555532211 1111 122222222 234444433322 12211
Q ss_pred EE---Eecccccce-EeEEcC-CCCeEEEEecCCcEEEEcCCCCCCCC-----CCCCc-------ccceeeccccCC-Cc
Q 023246 157 RL---MVGDRHVVN-QLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNA-------EKIMKANKQGRE-DH 218 (285)
Q Consensus 157 ~~---~~~h~~~v~-~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~-------~~~~~~~~~~~~-~~ 218 (285)
.. +.....++. .-.+.+ +++++....+ |+|.+.|+....... +.... ..-........+ .+
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 11 111001110 003455 7777655555 999999975443211 10000 000011111223 33
Q ss_pred eEEEe---------CCCCeEEEEEecccccceeEeeeccccccCCCCCcC-eEEEeecCCCCC
Q 023246 219 SRITL---------TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEG-ETYLLGFSDSDA 271 (285)
Q Consensus 219 ~~~~~---------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 271 (285)
+++.. ...+.|.++|..+++.+.++........++...++. .+|+....+++.
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 44433 223689999999998888876555555555555555 566655444433
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.9e-06 Score=71.92 Aligned_cols=155 Identities=7% Similarity=-0.009 Sum_probs=90.8
Q ss_pred eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--C
Q 023246 6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D 81 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--d 81 (285)
+...+|+||+..++++.+.++ .|.++|+.+++.. .+ ..+........|+|||+.|+-.+ .
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~---------------~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT---------------QI-TNYPGIDVNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE---------------Ec-ccCCCccCccEECCCCCEEEEEECCC
Confidence 456789999755666665554 4666677666421 11 11122223457999998555432 2
Q ss_pred --CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---------CeEEEEec
Q 023246 82 --ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIWKK 150 (285)
Q Consensus 82 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~v~vwd~ 150 (285)
..|+++|+.++ +. +.+..... .... |+|+|++++..... ..|++.|+
T Consensus 299 g~~~Iy~~dl~~g----------------~~-~rlt~~g~----~~~~-~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 299 GYPNIFMKKLNSG----------------SV-EQVVFHGK----NNSS-VSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CCceEEEEECCCC----------------Ce-EeCccCCC----cCce-ECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 26888888765 22 22221111 1135 49999988765543 37888899
Q ss_pred CCCceEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCC
Q 023246 151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL 200 (285)
Q Consensus 151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~ 200 (285)
.+++. ..+... .......|+|+|++++....++ .+.+.++.+.....+
T Consensus 357 ~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 357 NSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 87764 344432 2334688999999876655332 366667766544333
No 286
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=6.6e-09 Score=86.22 Aligned_cols=201 Identities=13% Similarity=0.182 Sum_probs=132.4
Q ss_pred eeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEec---
Q 023246 6 LNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYN--- 80 (285)
Q Consensus 6 v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~--- 80 (285)
+.|+++.-+. ..+++.|..+|.|.+-.++...- .......+|....++++|++- ...||.|-
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhhhh
Confidence 4566665533 26899999999999988875431 123344778889999999995 45777762
Q ss_pred --CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246 81 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 81 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
|..+.|||+.+... ..+....|.+ .... ..+++| ..+.+++++|.....+.++|++.. +..
T Consensus 126 rnds~~~Iwdi~s~lt------------vPke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs-~~~ 189 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLT------------VPKESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQS-LDS 189 (783)
T ss_pred cccCCccceecccccC------------CCccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhh-hhh
Confidence 66799999987631 0011112222 2222 557775 788899999999999999999832 222
Q ss_pred EEecccccceEeEEcC-CCCeEEEEecCCcEEEEc-CCCCC--CCCCC----CCcccceeeccccCCCceEEEeCCC-Ce
Q 023246 158 LMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWA-PMPTD--FPPLP----DNAEKIMKANKQGREDHSRITLTPD-VI 228 (285)
Q Consensus 158 ~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~d-~~ 228 (285)
...-.+..+..+..+| ...++++-. |+.|-+|| .+.-+ ++.+. .....+..+.|++.....+++.+.| ++
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t 268 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT 268 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence 2222344566777888 677777666 99999999 43322 12221 1223477888877766677766665 88
Q ss_pred EEEEEecc
Q 023246 229 MHVLRLQR 236 (285)
Q Consensus 229 i~vwd~~~ 236 (285)
|+.+|+..
T Consensus 269 Irlydi~~ 276 (783)
T KOG1008|consen 269 IRLYDICV 276 (783)
T ss_pred EEEecccc
Confidence 99998864
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.69 E-value=3.7e-06 Score=76.49 Aligned_cols=208 Identities=9% Similarity=0.084 Sum_probs=120.0
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEcc----CCcccCCcC--CCCCc--------ccc---------------ccc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIR----KCHWYSPIS--SDTPV--------DTF---------------CPR 54 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~----~~~~~~~~~--~~~~~--------~~~---------------~~~ 54 (285)
.+|.+++||||. ++|+..+.++++.+.+-. ....+.... ..+++ ..| ...
T Consensus 121 ~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 579999999985 899999989998886421 111000000 00000 000 000
Q ss_pred ----ccCCCCCcceEEEEEecCCCEEEEec----C---CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceee
Q 023246 55 ----HLIGKNNIHITGLAYSNTSELLISYN----D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 123 (285)
Q Consensus 55 ----~~~~~h~~~v~~i~~s~~~~~l~s~~----d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 123 (285)
..+. +...-..|+|-.||+++|++. . ..++||+-... ...+-. .... --
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-----------------L~stSE-~v~g-Le 259 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-----------------LQSTSE-PVDG-LE 259 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-----------------EEeccc-cCCC-cc
Confidence 1112 444667899999999998842 2 46899997621 211111 1111 12
Q ss_pred eeEEEecCCCcEEEEecC---CCeEEEEecCCCceEEEE----ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 124 KGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
..++ |-|.|+++++.-. ...|.+|..+ |-.-..| ......|..++|++++..||..-.|. |.+|-..+..
T Consensus 260 ~~l~-WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 260 GALS-WRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCcc-CCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 3567 5999999988654 4567777754 3332222 23456899999999999999887665 9999887654
Q ss_pred C---CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 197 F---PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 197 ~---~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
. +.+.- ....+....|-......+..++.++.+..+++.
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 1 12211 112222244433344456666666766655543
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=3e-06 Score=71.97 Aligned_cols=219 Identities=12% Similarity=0.171 Sum_probs=137.2
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
+++.|.-+.|+..+ ..|-|...+|.|.+|-+..+.. +...+-.....-|.+++|..+|..++. ..
T Consensus 70 H~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW-------------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 70 HNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSW-------------CEEMINNRNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred CcceEEEEEecccc-ccccccCCCceEEEEeeecccH-------------HHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence 46788999999965 7888999999999999998864 433343455677899999999987776 46
Q ss_pred CCcEEEEEcCCCC------CCCC-------------------CCCCCcc-----ccCCC--C----ceEeecccCceeee
Q 023246 81 DELVYLFEKNMGL------GPSP-------------------LSLSPED-----LQKRE--E----PQVYSGHRNSQTVK 124 (285)
Q Consensus 81 d~~i~iwd~~~~~------~~~~-------------------~~~~~~~-----~~~~~--~----~~~~~~~~~~~~i~ 124 (285)
||.|.+=.+.... .... ......+ ..+.+ + ...+...... |.
T Consensus 136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k--ia 213 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK--IA 213 (1189)
T ss_pred cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc--cc
Confidence 8887665554332 0000 0000000 00000 0 0011111111 44
Q ss_pred eEEEe-------cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCC---------cEE
Q 023246 125 GVNFF-------GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TVK 188 (285)
Q Consensus 125 ~~~~~-------~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---------~i~ 188 (285)
.+.|+ .|+...++.+...|.+.+..-.+......+. ..-.+....|+++|..|+.|+.|. .|.
T Consensus 214 ~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 214 EIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred ceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 45432 4577889999999999887654333222222 235788899999999999998753 577
Q ss_pred EEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 189 LWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+|.+-+..+.+++.....+..+.|... .+.++...|+.|++-+++....
T Consensus 293 Fysp~G~i~gtlkvpg~~It~lsWEg~--gLriA~AvdsfiyfanIRP~yk 341 (1189)
T KOG2041|consen 293 FYSPYGHIVGTLKVPGSCITGLSWEGT--GLRIAIAVDSFIYFANIRPEYK 341 (1189)
T ss_pred EeccchhheEEEecCCceeeeeEEcCC--ceEEEEEecceEEEEeecccce
Confidence 887766666666666666666665443 3555666677777777665433
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.1e-05 Score=69.07 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=110.1
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---------
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------- 73 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--------- 73 (285)
+..-.++.|+|.| +||-|+. ..|.+-|..+-+.+ ..+ ..|...|+.+.|.|..
T Consensus 15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~i--------------qsi-e~h~s~V~~VrWap~~~p~~llS~~ 76 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLI--------------QSI-ELHQSAVTSVRWAPAPSPRDLLSPS 76 (1062)
T ss_pred cccccccccCccc--eEEEecC-ceEEEEehhhhhhh--------------hcc-ccCccceeEEEeccCCCchhccCcc
Confidence 3345678999964 8887775 57888898877632 222 6788899999997731
Q ss_pred --C-EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe--cCCC-cEEEEecCCCeEE
Q 023246 74 --E-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHLF 146 (285)
Q Consensus 74 --~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~l~~~~~dg~v~ 146 (285)
+ +||++. .|.|.+||.... ..+..+..+..+ +..++|. -++. ..+++-.....+.
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEEE
Confidence 2 455565 899999999877 455566666655 7888752 2344 4566667778999
Q ss_pred EEecCCCceEEEEecccccceEeEEcCC-CCeEEEEecCCcEEEEcC
Q 023246 147 IWKKKGGKLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 147 vwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~ 192 (285)
+|+..+|+.+.....-.....++.+.|- .+.+..-+..|.+.+-+.
T Consensus 139 LwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 139 LWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred EEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 9999999999887655566777899884 445666666777777664
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=1.9e-06 Score=65.96 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=110.8
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccc--c-CCCCCcceEEEEEecCC---CEEE
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH--L-IGKNNIHITGLAYSNTS---ELLI 77 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~~~h~~~v~~i~~s~~~---~~l~ 77 (285)
..|+++.|...| .+|+||...|.|.+|.-.... ....+.-...+.+.+.. + .-.-...|..|.|-.++ ++|+
T Consensus 27 d~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 468999999975 899999999999999765332 11111000010000000 0 00113468889988765 3888
Q ss_pred EecCCcEEEEEcCCCC--------------CCCCCCC-CCcc--ccCC---------CCceEe-ecccCceeeeeEEEec
Q 023246 78 SYNDELVYLFEKNMGL--------------GPSPLSL-SPED--LQKR---------EEPQVY-SGHRNSQTVKGVNFFG 130 (285)
Q Consensus 78 s~~d~~i~iwd~~~~~--------------~~~~~~~-~~~~--~~~~---------~~~~~~-~~~~~~~~i~~~~~~~ 130 (285)
++.|.+|++|-+...+ .+....+ +... +++. ++.+.+ ..|. -.|.++.+ +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~--yhiNSiS~-N 181 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP--YHINSISF-N 181 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce--eEeeeeee-c
Confidence 8999999999987553 0111000 0000 1110 011111 2344 33889997 7
Q ss_pred CCCcEEEEecCCCeEEEEecCCCce---EEEEeccc-----ccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~ 195 (285)
.+.+.++++ +|-.|.+|+++-... +-.++.|. .-|++..|+|..- .+.-.+..|.|++-|+++.
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 777777665 478899999764332 33334443 4588899999644 4677777899999999843
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=1.4e-05 Score=62.35 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=129.1
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCc-EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--- 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--- 80 (285)
+...++.+|..+..++.+-.-|+ ..+||..+++....+..+ .-.++ .+| -.||++|++|.+..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yGH------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YGH------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ecC------EEEcCCCCEEEEecccc
Confidence 44578899976778888887776 567999998754332211 11111 344 47999999888753
Q ss_pred ---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC----------------
Q 023246 81 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------------- 141 (285)
Q Consensus 81 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------- 141 (285)
.|.|-|||..... +.+..|..+.-. -..+.+ .|+++.|+.+..
T Consensus 73 ~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecChh
Confidence 4789999998432 566677766543 566775 899977766532
Q ss_pred --CCeEEEEecCCCceEEEEe----cccccceEeEEcCCCCeEEEEecCC-------cEEEEcCCCC-CC--------CC
Q 023246 142 --CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEK-------TVKLWAPMPT-DF--------PP 199 (285)
Q Consensus 142 --dg~v~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~t~~~d~-------~i~iwd~~~~-~~--------~~ 199 (285)
+-.+.+.|..+|+.+.+.. -|+..|..|++.++|..++..-..| .|-+++.... .. ..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR 214 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence 3357777888899887643 3778899999999987766655444 2444443321 11 11
Q ss_pred CCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEeccccccee
Q 023246 200 LPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAY 242 (285)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~~~~~ 242 (285)
+.++...| .. ..+.. ..++.-..+.+.+||..+++.+..
T Consensus 215 l~~Y~gSI---a~-~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 215 LNGYIGSI---AA-DRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred hCCceEEE---EE-eCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 22222222 21 22333 445666679999999988866544
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.2e-06 Score=73.40 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=101.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..+.|++++. ..|+-|+.+|.|++++....- ... ..|... ..+|+++++++ ||
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~----------------~~~-~~~s~~------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP----------------KTN-FDHSSS------ILEGEYVASCSDDG 93 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecCCcc----------------ccc-cccccc------ccCCceEEEecCCC
Confidence 4456666655 689999999999999986331 111 223332 56789999976 99
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-----CcEEEEecCCCeEEEEecC---CCc
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GGK 154 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~---~~~ 154 (285)
+|.|..+-+. +...++.-+ .++.++++ +|+ .+.+++|+..| +.++.-+ ...
T Consensus 94 kv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~ 152 (846)
T KOG2066|consen 94 KVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD 152 (846)
T ss_pred cEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence 9999998776 454544433 33899997 887 56899999998 7777633 122
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
.+ .+..-.++|.++.|. |+++|-++.+| |++||...++
T Consensus 153 ~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 153 SV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred ce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence 22 455567899999995 67888888776 8999987765
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=3.4e-06 Score=63.31 Aligned_cols=146 Identities=10% Similarity=-0.036 Sum_probs=97.1
Q ss_pred EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc--ceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246 18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELLIS-YNDELVYLFEKNMGLG 94 (285)
Q Consensus 18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~ 94 (285)
-+..++.|.++++.++..+... . .-|.. .+.+++++++++++++ |....|..|.+....
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~--------------~---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s- 191 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK--------------F---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES- 191 (344)
T ss_pred ceeeccCCcceeEEEEecCccc--------------c---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc-
Confidence 4455666777777776644210 0 11222 3788999999999888 678889999887541
Q ss_pred CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EE----EEecccccceEe
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR----LMVGDRHVVNQL 169 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~----~~~~h~~~v~~~ 169 (285)
.....+....+. ..-.+..| +.....+|++.+||.+.|||++.-.. .. +-..|.+.+..+
T Consensus 192 -------------ey~~~~~~a~t~-D~gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c 256 (344)
T KOG4532|consen 192 -------------EYIENIYEAPTS-DHGFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVC 256 (344)
T ss_pred -------------ceeeeeEecccC-CCceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEE
Confidence 012222222221 11455665 88899999999999999999886432 22 223588999999
Q ss_pred EEcCCCCe--EEEEecCCcEEEEcCCCCC
Q 023246 170 EPHPHIPM--FATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 170 ~~~p~~~~--l~t~~~d~~i~iwd~~~~~ 196 (285)
.|+|-|.. |+..-.-+.+.+.|++...
T Consensus 257 ~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 257 RFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EecCCCcceEEEEecCcceEEEEEcccCc
Confidence 99987765 4444445789999998775
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.5e-07 Score=72.06 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=140.4
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 79 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~ 79 (285)
|++..|+-+.... ..++.+++.||.++.|--..-.-. . -..+. ..|...|.+++.+-++.++++ +
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGv----------E-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGV----------E-FVKHF-RAHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccce----------e-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence 7888898887777 379999999999999976531110 0 12222 578888999999999999999 5
Q ss_pred c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---CcEEEEecCCCeEEEEecCCC--
Q 023246 80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGG-- 153 (285)
Q Consensus 80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~-- 153 (285)
. |..++++|+..- ..+..++...-+..+..+. ++. ....++.-.++.+.++|-...
T Consensus 73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred CcccceeEEEeecc----------------chhhhcccccCCCceEEec--CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 5 899999999765 2222222211111122111 222 133344567899999996533
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC------CC-CCCCC--------CcccceeeccccCCCc
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------DF-PPLPD--------NAEKIMKANKQGREDH 218 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~------~~-~~~~~--------~~~~~~~~~~~~~~~~ 218 (285)
+....-.-|..+|..+.+.|.+..+++....|.|..|..... ++ ..++. ...........++.+.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 344444569999999999999999999999999999998741 11 11110 0111111222234455
Q ss_pred eEEEeCCCCeEEEEEecccccceeEe
Q 023246 219 SRITLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 219 ~~~~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
.+.+.++|..|+++++.++...+.++
T Consensus 215 qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccCcccEEEEEEeccchhhhhhh
Confidence 77788899999999999998777664
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=8.6e-08 Score=51.12 Aligned_cols=38 Identities=24% Similarity=0.688 Sum_probs=34.8
Q ss_pred CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246 109 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149 (285)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 149 (285)
+++.++.+|... |.+++| +|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence 467889999977 999997 99999999999999999997
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=1.8e-05 Score=65.68 Aligned_cols=214 Identities=8% Similarity=-0.009 Sum_probs=119.0
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..+++++.+|.|..+|..+++..........+ .. .+.. .++..++.+.++.++.+|..++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~------------~~---~p~v-~~~~v~v~~~~g~l~ald~~tG---- 125 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERL------------SG---GVGA-DGGLVFVGTEKGEVIALDAEDG---- 125 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCc------------cc---ceEE-cCCEEEEEcCCCEEEEEECCCC----
Confidence 57888889999999999999854332222110 11 1111 1334444456999999999877
Q ss_pred CCCCCCccccCCCCceEeecccCceeeee-EEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc-----eEeE
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-----NQLE 170 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~~~ 170 (285)
+.+........ +.+ ... .+..++.++.+|.|+.||.++|+.+..+....... ....
T Consensus 126 ------------~~~W~~~~~~~---~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 126 ------------KELWRAKLSSE---VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred ------------cEeeeeccCce---eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 34333322111 221 111 24466777889999999999999887765432211 1111
Q ss_pred EcCCCCeEEEEecCCcEEEEcCCCCCCC-CCC--CCc--c---cceeeccc-cCCCceEEEeCCCCeEEEEEecccccce
Q 023246 171 PHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP--DNA--E---KIMKANKQ-GREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 171 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~--~~~--~---~~~~~~~~-~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
.. +..++.+..++.+..+|+++++.. +.. ... . ........ ...+..++..+.++.++.||..+++.+-
T Consensus 188 ~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 188 IA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred EE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 11 246677778899999999877531 111 000 0 00000000 0123467777889999999988775543
Q ss_pred eEeee------ccccccCCCCCcCeEEEeecCCCC
Q 023246 242 YRERR------YNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 242 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
..... .....+-....++.+++++..+|+
T Consensus 266 ~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 266 KRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred eeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 32211 011122222345667777776664
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.57 E-value=1.1e-05 Score=66.78 Aligned_cols=215 Identities=12% Similarity=0.044 Sum_probs=118.9
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..++.++.++.+..+|..+++........ ..+.+.-...++..++...++.|+.||..++
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG---- 165 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS----------------SEVLSPPLVANGLVVVRTNDGRLTALDAATG---- 165 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC----------------ceeecCCEEECCEEEEECCCCeEEEEEcCCC----
Confidence 57778888999999999988754322111 1111111112344555566999999999887
Q ss_pred CCCCCCccccCCCCceEeecccCceee---eeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc----c---c
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRNSQTV---KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH----V---V 166 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~----~---v 166 (285)
+.+-.+......... ..... .+..++.+..++.+..+|.++|+.+........ . .
T Consensus 166 ------------~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 166 ------------ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred ------------ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 343333322211000 11111 124677788899999999999988765431100 0 0
Q ss_pred eEeEEcC--CCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 167 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 167 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
..+.-+| .+..+..++.+|.+..||+++++.. ... ... ... ....+..++.++.+|.++.+|..+++.+-..
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~-~~~---p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS-YQG---PAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC-ccC---ceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 0111111 2456777888999999999877632 111 100 000 0113446777889999999999877554322
Q ss_pred ee-e--------ccccccCCCCCcCeEEEeecCCCCC
Q 023246 244 ER-R--------YNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 244 ~~-~--------~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
.. . .....+...+.+|.+++++..+|+.
T Consensus 306 ~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 306 DELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 11 0 0111222334556677777665543
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.7e-05 Score=64.33 Aligned_cols=139 Identities=8% Similarity=0.096 Sum_probs=95.3
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-----
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN----- 80 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~----- 80 (285)
+-+.|||.| .+|+|--.-| |.+|--.+-.. ... ..|. .|.-+.|||..++|++ +.
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r--------------~~R--F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~ 274 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGESFDR--------------IQR--FYHP-GVQFIDFSPNEKYLVTYSPEPIIV 274 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCccHHH--------------HHh--ccCC-CceeeecCCccceEEEecCCcccc
Confidence 458899975 8999877654 68896554321 111 2344 5889999999999998 41
Q ss_pred C------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246 81 D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 154 (285)
Q Consensus 81 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 154 (285)
+ ..++|||+.++ ...+.|.....+..+.-+--|+.+++|++.-.. ..|.||+...-.
T Consensus 275 ~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ 337 (698)
T KOG2314|consen 275 EEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM 337 (698)
T ss_pred CcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee
Confidence 1 56999999999 577777764443334444336999999988765 678899987644
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEE
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATC 181 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~ 181 (285)
++..-.-.-..|....|+|.+..||--
T Consensus 338 lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 338 LLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred eecccccCCccccCcccCCCcceEEEE
Confidence 432222234678899999997776643
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.7e-06 Score=65.98 Aligned_cols=75 Identities=7% Similarity=0.102 Sum_probs=58.9
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 80 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~- 80 (285)
..-|..++|+|.+.-++..++.+.+|+|.|+++... .... ..| ..+++++|.-+.. ++.+|.
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--------------vssy-~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--------------VSSY-IAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEeccccee--------------eehe-ecc-CCceeeeeccCCcceeEEecc
Confidence 446889999998745899999999999999998752 2222 344 6899999998775 666664
Q ss_pred CCcEEEEEcCCCC
Q 023246 81 DELVYLFEKNMGL 93 (285)
Q Consensus 81 d~~i~iwd~~~~~ 93 (285)
.|.|.|||++...
T Consensus 257 nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 257 NGMVLVYDMRQPE 269 (463)
T ss_pred CceEEEEEccCCC
Confidence 9999999998763
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.53 E-value=0.00018 Score=54.82 Aligned_cols=208 Identities=12% Similarity=0.094 Sum_probs=113.3
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEE
Q 023246 9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 87 (285)
Q Consensus 9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iw 87 (285)
++.+++| .+|| .-+|..|.|-..+..-.. .+ ....+.+.-...-+.++||||+.+||.+ +.|+|++|
T Consensus 3 ~~~~~~G-k~lA-i~qd~~iEiRsa~Ddf~s-------i~---~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDG-KLLA-ILQDQCIEIRSAKDDFSS-------II---GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCC-cEEE-EEeccEEEEEeccCCchh-------ee---EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 5566754 5555 456777877766543110 00 0111112223345789999999999986 59999999
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-----CcEEEEecCCCeEEEEecCCC-----ceEE
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR 157 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~~~-----~~~~ 157 (285)
|+.... +-.......+.+. ....|.++.|..+. ...|+.-..+|.++-|-+..+ +..+
T Consensus 71 dl~g~~-----------lf~I~p~~~~~~d-~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 71 DLMGSE-----------LFVIPPAMSFPGD-LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred ecccce-----------eEEcCcccccCCc-cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 997541 0000000111111 11226666663322 224666667788776665322 2233
Q ss_pred EEe--c-ccccceEeEEcCCCCeEEEEe-cCC----------cEEEEcCCCCCC---------------------CCCC-
Q 023246 158 LMV--G-DRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTDF---------------------PPLP- 201 (285)
Q Consensus 158 ~~~--~-h~~~v~~~~~~p~~~~l~t~~-~d~----------~i~iwd~~~~~~---------------------~~~~- 201 (285)
++. . +...|.++.++|..+.|+.|| ... -+.-|.+-.+.. ..+.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 332 2 357899999999988866665 222 245565422110 0000
Q ss_pred -------CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 202 -------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 202 -------~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
......+-....++++..+++..-+|.|.+|++.+-.+.
T Consensus 219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 001111122223556778889999999999998876554
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.52 E-value=0.00021 Score=57.76 Aligned_cols=102 Identities=8% Similarity=-0.028 Sum_probs=70.6
Q ss_pred CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--e---------cCCcEEEEEcCCCCC
Q 023246 26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--Y---------NDELVYLFEKNMGLG 94 (285)
Q Consensus 26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~---------~d~~i~iwd~~~~~~ 94 (285)
++|.+.|..+++.+.. +..+.... .+ ++|+++.|.. . .+..|.+||..+.
T Consensus 27 ~~v~ViD~~~~~v~g~--------------i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM--------------TDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-- 87 (352)
T ss_pred ceEEEEECCCCEEEEE--------------EEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--
Confidence 8999999998874322 21222222 34 9999985444 4 4688999999987
Q ss_pred CCCCCCCCccccCCCCceEeecccCc-----eeeeeEEEecCCCcEEEEec-C-CCeEEEEecCCCceEEEEec
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNS-----QTVKGVNFFGPNDEYVMSGS-D-CGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~-~-dg~v~vwd~~~~~~~~~~~~ 161 (285)
+.+..+.....+ .....+++ +|+|++++... . +..|.+.|+.+++.+.++..
T Consensus 88 --------------~~~~~i~~p~~p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 88 --------------LPIADIELPEGPRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred --------------cEEeEEccCCCchhhccCccceEEE-CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 566555532211 11335665 99999998766 3 79999999999999988874
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=2e-05 Score=60.87 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=108.3
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..+++++.++.|..||..+|+.......+.++. .. ....++.+++...++.|+.+|..++
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------~~----~~~~~~~v~v~~~~~~l~~~d~~tG---- 96 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS------------GA----PVVDGGRVYVGTSDGSLYALDAKTG---- 96 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCGG------------SG----EEEETTEEEEEETTSEEEEEETTTS----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeecccccc------------ce----eeecccccccccceeeeEecccCCc----
Confidence 567777899999999999998543332221111 11 2333445555567889999998887
Q ss_pred CCCCCCccccCCCCceEe-ecccCce---eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc------
Q 023246 97 PLSLSPEDLQKREEPQVY-SGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV------ 166 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v------ 166 (285)
+.+... ....... ......+ .+..++.+..++.|..+|+++|+.+..........
T Consensus 97 ------------~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 97 ------------KVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp ------------CEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ------------ceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 454442 2221110 1222322 37778888889999999999999988886543221
Q ss_pred -----eEeEEcCCCCeEEEEecCCc-EEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 167 -----NQLEPHPHIPMFATCGIEKT-VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 167 -----~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
..+.+. ++ .+..++.++. +.+ |+.+++.. +.......... ....+..++..+.++.|..||+.+++..
T Consensus 162 ~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 162 FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 222222 34 6666666775 555 98887632 11111111111 1223446666668999999999988653
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=2.9e-06 Score=72.57 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=118.5
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c---C------CcEEE
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---D------ELVYL 86 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~---d------~~i~i 86 (285)
.++|.|...|+|.++|+.++.. ..-+.-|+..|.++.|-....++..+ + + +.+.+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v---------------~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~v 502 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAV---------------AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVV 502 (1062)
T ss_pred eeEEeecCCceEEEEEecchhh---------------hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEE
Confidence 4889999999999999998852 22226789999999998877655433 1 2 34678
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 164 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 164 (285)
-|++++ .-+.|++ .....+|..+.. +..++|++..-.+.-+-+||+++..+++.+...-.
T Consensus 503 tdLrtG-----------------lsk~fR~l~~~despI~~irv-S~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P 564 (1062)
T KOG1912|consen 503 TDLRTG-----------------LSKRFRGLQKPDESPIRAIRV-SSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP 564 (1062)
T ss_pred EEcccc-----------------cccccccCCCCCcCcceeeee-cccCceEEEEecccchHHHhhccchHHHHHhhcCC
Confidence 888887 3334442 222345999996 89999999999999999999988777655543333
Q ss_pred cceEeEEc-CCCC----------------eEEEEecCCcEEEEcCCCCC--CC-------CCCCCcccceeeccccCCCc
Q 023246 165 VVNQLEPH-PHIP----------------MFATCGIEKTVKLWAPMPTD--FP-------PLPDNAEKIMKANKQGREDH 218 (285)
Q Consensus 165 ~v~~~~~~-p~~~----------------~l~t~~~d~~i~iwd~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~ 218 (285)
.++.+.|+ |.-+ ..++.+. ..+++.+.... .. .............|. +.
T Consensus 565 ~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~--es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk---~d 639 (1062)
T KOG1912|consen 565 LITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSV--ESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK---DD 639 (1062)
T ss_pred cEEEEeecccCCCCcccccchhhhhhhhceeeeccc--cchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc---CC
Confidence 48888887 4322 2333331 22233221110 00 011111112233332 34
Q ss_pred eEEEeCCCCeEEEEEeccccc
Q 023246 219 SRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 219 ~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.++.|..+|.+.+||+..++.
T Consensus 640 ~lv~GD~~GNl~~WDlg~R~S 660 (1062)
T KOG1912|consen 640 ILVVGDVEGNLVVWDLGRRQS 660 (1062)
T ss_pred eeEeecccCceeEEecccccc
Confidence 889999999999999876643
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=8.9e-06 Score=69.85 Aligned_cols=149 Identities=20% Similarity=0.151 Sum_probs=108.3
Q ss_pred ceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246 63 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 141 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 141 (285)
.+++++++ +++|+-|. +|.|++++.+.. . .+...|... +.+|.++++|+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------~-~~~~~~s~~---------~~~Gey~asCS~ 91 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------P-KTNFDHSSS---------ILEGEYVASCSD 91 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------c-ccccccccc---------ccCCceEEEecC
Confidence 45555554 35777776 999999998754 2 232333321 568999999999
Q ss_pred CCeEEEEecCCCceEEEEecccccceEeEEcCC-----CCeEEEEecCCcEEEEcCC---CCCCCCCCCCcccceeeccc
Q 023246 142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IPMFATCGIEKTVKLWAPM---PTDFPPLPDNAEKIMKANKQ 213 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~t~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~ 213 (285)
||.|.+..+-+.+...++.- ..++.+++++|+ .+++++||..| +.++.-+ ......+....+.+.++.|.
T Consensus 92 DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 99999999988887776664 358999999998 45799999888 7777632 11222345566778888886
Q ss_pred cCCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246 214 GREDHSRITLTPDVIMHVLRLQRRQTLAYRERR 246 (285)
Q Consensus 214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~ 246 (285)
.. +++...|--++|+|...++.+..+++.
T Consensus 170 g~----lIAWand~Gv~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 170 GN----LIAWANDDGVKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred Cc----EEEEecCCCcEEEeccccceeeccCCC
Confidence 64 778888888999999998887776443
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.5e-07 Score=81.40 Aligned_cols=150 Identities=11% Similarity=0.160 Sum_probs=107.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-- 80 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-- 80 (285)
..-+|++|+-+ .+.|+.|+..|.|++|++.+|.. .... .+|..+|+-+.=+.+|.+..+ ++
T Consensus 1102 ~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~--------------e~s~-ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSM--------------EESV-NCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred cceeeEEeecC-CceEEeeeccceEEEEEccCccc--------------cccc-cccccccccccccCCcceeeeecccc
Confidence 35689999996 59999999999999999999962 2222 789999999999999985554 32
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246 81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 160 (285)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 160 (285)
.-...+|++.... ...+.|.. -.++.| +...++-+.|.......+||+.++.++.++.
T Consensus 1166 ~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred CchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 4467899987542 34455543 345666 5555555666666788999999998776632
Q ss_pred ----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 161 ----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 161 ----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.+-.-+...|+|+...++ .|| .+||.+...
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHH
Confidence 1122336788999988765 355 489987653
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00017 Score=65.16 Aligned_cols=216 Identities=11% Similarity=0.133 Sum_probs=126.1
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~ 82 (285)
..|.++.|.-+. +.++.+..+|.|.+-|..+.... +...-...|.+++||||++.++-.+ .+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e----------------ivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE----------------IVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEccccccee----------------eeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 468888888864 78888899999999988776531 1133466899999999999887754 56
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCC--------CCceEeecccC-------------------ceeeeeEEEecCCCcE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKR--------EEPQVYSGHRN-------------------SQTVKGVNFFGPNDEY 135 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~~ 135 (285)
++.+.+-. -.......+.....+.. +.-..|++... ...=..++| --+|++
T Consensus 132 tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~ 209 (1265)
T KOG1920|consen 132 TLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEY 209 (1265)
T ss_pred EEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcE
Confidence 66655441 11000011100000000 00111221110 001234774 889999
Q ss_pred EEE-----ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCCC----CCCCCC
Q 023246 136 VMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF----PPLPDN 203 (285)
Q Consensus 136 l~~-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~----~~~~~~ 203 (285)
+++ ......+++||.+ |.+-..-....+.=.+++|-|.|..+++-. .|..|.++..++-.- ..++..
T Consensus 210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 988 3334899999988 544333333334456799999999988774 456799998765432 223333
Q ss_pred cccceeeccccCCCceEEE---eCCCCeEEEEEecccccc
Q 023246 204 AEKIMKANKQGREDHSRIT---LTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~---~s~d~~i~vwd~~~~~~~ 240 (285)
...+..+.|.. ++..++. ......|++|-+.+.+-.
T Consensus 289 e~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 289 EKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ccchheeeecC-CCCceeeeecccccceEEEEEecCeEEE
Confidence 33355555533 3444433 334455999988775433
No 307
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.4e-06 Score=71.77 Aligned_cols=155 Identities=11% Similarity=0.186 Sum_probs=101.1
Q ss_pred ceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-------CceEEEEecccccceEeEEcCCCCeEEEEec
Q 023246 111 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 183 (285)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~ 183 (285)
+..|.+|+.. |..+.- -.+.+.+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++
T Consensus 728 L~nf~GH~~~--iRai~A-idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEK--IRAIAA-IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHH--hHHHHh-cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 4567788876 877764 45677899999999999999763 33667888999999999999988888766
Q ss_pred CCcEEEEcCCCCC-CCCCCC--CcccceeeccccC-CCceEEEe-CCCCeEEEEEecccccceeE---------------
Q 023246 184 EKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGR-EDHSRITL-TPDVIMHVLRLQRRQTLAYR--------------- 243 (285)
Q Consensus 184 d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-s~d~~i~vwd~~~~~~~~~~--------------- 243 (285)
|+-|++||+--+. +.++.. .....-.+.+... +..+++++ +...+++++|.+...-....
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 7899999985444 222211 1112222222233 34455666 67899999998875433222
Q ss_pred eeeccccccCCCCCcCeEEEeecCCCC
Q 023246 244 ERRYNAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
...+.+..++..-..|.+..++...|.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCc
Confidence 222334444444445566666666655
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.36 E-value=8.9e-05 Score=57.20 Aligned_cols=181 Identities=12% Similarity=0.085 Sum_probs=99.8
Q ss_pred CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCcc
Q 023246 25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED 104 (285)
Q Consensus 25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 104 (285)
+|+|..||..+++.+...... .... ...+.....++.+++...++.|+.||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~------------~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG------------PGIG-GPVATAVPDGGRVYVASGDGNLYALDAKTG------------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS------------SSCS-SEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred CCEEEEEECCCCCEEEEEECC------------CCCC-CccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence 678888998888744332110 0111 122223334445555567999999999888
Q ss_pred ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE-ecccc---cceEeEEcCCCCeEEE
Q 023246 105 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRH---VVNQLEPHPHIPMFAT 180 (285)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~---~v~~~~~~p~~~~l~t 180 (285)
+.+..+...... ..... ..+..++.++.++.++.+|..+|+.+... ..... ..........+..++.
T Consensus 57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence 565555542211 11111 23445566667889999999999999884 32211 1122223334777888
Q ss_pred EecCCcEEEEcCCCCCC---CCCCCCc--ccc-----eeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 181 CGIEKTVKLWAPMPTDF---PPLPDNA--EKI-----MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 181 ~~~d~~i~iwd~~~~~~---~~~~~~~--~~~-----~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
+..++.|..+|++++++ ....... ..+ ........++ .++..+.++.+..+|+.+++.+
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE
Confidence 88899999999988764 1121111 000 0011111122 5666666765333388887744
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.34 E-value=1.7e-05 Score=66.26 Aligned_cols=139 Identities=13% Similarity=0.132 Sum_probs=79.3
Q ss_pred eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246 6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY 85 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~ 85 (285)
...++++|.+ +.++. +.||.-.||.....+ ....+......|.+.+++.+--...+|.
T Consensus 35 p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 35 PQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp -SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-EE
T ss_pred CeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeEE
Confidence 4679999965 66666 667888888843322 1223455578899966655545688899
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccccc
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 165 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 165 (285)
|+.--.. .....+.... . +..+ +. |..|...+. +.|.+||..+++.++.+... +
T Consensus 93 I~kn~~~----------------~~~k~i~~~~-~--~~~I--f~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~ 146 (443)
T PF04053_consen 93 IYKNFKN----------------EVVKSIKLPF-S--VEKI--FG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--A 146 (443)
T ss_dssp EEETTEE-----------------TT-----SS----EEEE--E---SSSEEEEET-TEEEEE-TTT--EEEEESS---E
T ss_pred EEEcCcc----------------ccceEEcCCc-c--cceE--Ec--CcEEEEECC-CCEEEEEhhHcceeeEEecC--C
Confidence 9743222 2223333221 1 4444 23 777766654 48999999999999998743 4
Q ss_pred ceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 166 VNQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
|..+.|++++.+++..+.+ .+.+++.+
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 8999999999999888855 67777654
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=9.1e-05 Score=63.04 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=77.0
Q ss_pred EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEc
Q 023246 11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEK 89 (285)
Q Consensus 11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~ 89 (285)
++.. ..+++.|+.-|.+.+|+-..++.... ...+-.+.+..+..+++..++|.|. .|.|.++.+
T Consensus 41 ~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~--------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 41 VDAT-EEYLAMGSSAGSVYLYNRHTGEMRKL--------------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred eecC-CceEEEecccceEEEEecCchhhhcc--------------cccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 3443 37999999999999999887763211 1122344566677888877777764 899999988
Q ss_pred CCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246 90 NMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 152 (285)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 152 (285)
+....+ .....-. .|.. .|++++| ++++..+++|...|.|.+-.+.+
T Consensus 106 ~~~~p~-------------~~~~~t~~d~~~~~--rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELPR-------------DLDYVTPCDKSHKC--RVTALEW-SKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCCC-------------cceeeccccccCCc--eEEEEEe-cccccEEeecCCCceEEEEEech
Confidence 764210 1111111 1343 4999995 99999999999999998887765
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.3e-05 Score=69.86 Aligned_cols=180 Identities=10% Similarity=0.043 Sum_probs=119.6
Q ss_pred CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCC
Q 023246 15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGL 93 (285)
Q Consensus 15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~ 93 (285)
++..++.|+.-..+..+|+.+.+.... . .-....|+-++ .+++++.+|. .|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT------------T---NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee------------e---eccCCceEEEE--ecCcEEEeecccceEEeecCCcC-
Confidence 345677777777788888887653211 0 11122233333 4567888875 999999999887
Q ss_pred CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---------CCeEEEEecCCCceEEEEecccc
Q 023246 94 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRH 164 (285)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~vwd~~~~~~~~~~~~h~~ 164 (285)
+.++++..|.+. |.++ +-.|+.|++++. |..|+|||++.-+.+.-+.-+.+
T Consensus 208 ---------------~~iht~~aHs~s--iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~ 267 (1118)
T KOG1275|consen 208 ---------------ETIHTFDAHSGS--ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG 267 (1118)
T ss_pred ---------------ceeeeeeccccc--eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence 789999999976 7765 457889988875 66789999987766655554444
Q ss_pred cceEeEEcCCCCe-EEEEecCCcEEEEcC---CCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246 165 VVNQLEPHPHIPM-FATCGIEKTVKLWAP---MPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR 233 (285)
Q Consensus 165 ~v~~~~~~p~~~~-l~t~~~d~~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd 233 (285)
+ .-+.|+|.-.. ++.++..|...+-|. ......... ......+.....++.+..++.+..+|.|.+|.
T Consensus 268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3 55778886544 788888899999994 333221111 11122122223345566788899999999997
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.29 E-value=8.5e-05 Score=60.81 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=105.7
Q ss_pred CCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 60 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 60 h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
-.-++..++|||.|.+|++..-..|.+|.-... ..+..+.... |..+.| +|+++||.+=
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~~~~----V~~~~f-SP~~kYL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFRHPD----VKYLDF-SPNEKYLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccch----------------hheeeeecCC----ceeccc-Ccccceeeee
Confidence 456889999999999999988888999998766 4445554332 888997 9999999985
Q ss_pred cCC---------------CeEEEEecCCCceEEEEeccccc--ce-EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC
Q 023246 140 SDC---------------GHLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 201 (285)
Q Consensus 140 ~~d---------------g~v~vwd~~~~~~~~~~~~h~~~--v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 201 (285)
+.. ..+.+||..++..+..+.....+ .. -+.|+-+.+++|=.. ...++|+++ +..+...+
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCc
Confidence 543 35999999999999998865554 44 678888888755442 346899997 33322111
Q ss_pred CC---cccceeeccccC-CCceEEEe-----CCCCeEEEEEecccccce
Q 023246 202 DN---AEKIMKANKQGR-EDHSRITL-----TPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 202 ~~---~~~~~~~~~~~~-~~~~~~~~-----s~d~~i~vwd~~~~~~~~ 241 (285)
-+ ...+....++.. +...++.. ...+++++|.+.....+.
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~ 216 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV 216 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee
Confidence 11 122223322222 22223433 345888888887654443
No 313
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.28 E-value=0.00039 Score=57.13 Aligned_cols=204 Identities=10% Similarity=-0.010 Sum_probs=123.4
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCC---------------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceE-
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT- 65 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~- 65 (285)
+...|.-+.|+|. +.+|.+-+..+ .+.+||+.++..+..+.. . ......+
T Consensus 70 ~~~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~---------~----~q~~~~Wp 135 (561)
T COG5354 70 RHPDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG---------I----SQPYLGWP 135 (561)
T ss_pred ecCCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccc---------c----CCcccccc
Confidence 4456778899996 48998876544 489999998875332211 0 0111133
Q ss_pred EEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEE-----
Q 023246 66 GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMS----- 138 (285)
Q Consensus 66 ~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~----- 138 (285)
-+.|+-+..++|=-....++|+++..... ....+.++ . ..|....+ +|.++ .|+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~-------------~~p~~~lr--~--~gi~dFsi-sP~~n~~~la~~tPEk 197 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIE-------------EHPFKNLR--P--VGILDFSI-SPEGNHDELAYWTPEK 197 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccc-------------cCchhhcc--c--cceeeEEe-cCCCCCceEEEEcccc
Confidence 67888888776655566789999722200 01111221 1 22666665 66532 2222
Q ss_pred ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-----------cCCcEEEEcCCCCCCCCCCCCcccc
Q 023246 139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-----------IEKTVKLWAPMPTDFPPLPDNAEKI 207 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~ 207 (285)
.+..+++++|.+..+..+.+-.--.-.=..+.|.+.|++++.-- ....+.+++++...+.......+++
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV 277 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV 277 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence 56788999999987666554332233334688999998844221 1235788888765554433456777
Q ss_pred eeeccccCCCce-EEEeCCCCeEEEEEeccc
Q 023246 208 MKANKQGREDHS-RITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 208 ~~~~~~~~~~~~-~~~~s~d~~i~vwd~~~~ 237 (285)
....|.....+. +++|..+..+.++|++..
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc
Confidence 777775555443 455677888999998776
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=1e-05 Score=67.31 Aligned_cols=71 Identities=11% Similarity=0.253 Sum_probs=59.4
Q ss_pred eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.++++ +|+...++.|+.||.|.+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEec-CcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 888886 999999999999999999998755333 22334567889999999999999999999999986443
No 315
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=0.00011 Score=60.88 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=83.7
Q ss_pred ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-
Q 023246 63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD- 141 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~- 141 (285)
.-+-+.|||.|.+|++-...-|.+|--.+- ..++.|. |.+ +.-+.| +|+.+||++=+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f----------------~r~~RF~-Hp~---Vq~idf-SP~EkYLVT~s~~ 270 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESF----------------DRIQRFY-HPG---VQFIDF-SPNEKYLVTYSPE 270 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccH----------------HHHHhcc-CCC---ceeeec-CCccceEEEecCC
Confidence 456789999999999988777999987655 5666665 443 777887 999999998542
Q ss_pred ----------CCeEEEEecCCCceEEEEeccc--ccc-eEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 142 ----------CGHLFIWKKKGGKLVRLMVGDR--HVV-NQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 142 ----------dg~v~vwd~~~~~~~~~~~~h~--~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
...+.|||+.+|...+.+.... ..+ .-..||.|++++|--.. ..|.||+...
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 3579999999999988886522 222 33689999999887765 4688887543
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00032 Score=61.20 Aligned_cols=198 Identities=11% Similarity=0.101 Sum_probs=115.0
Q ss_pred EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcc-eEEEEEecCCCEEEE-ecC-C----
Q 023246 10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSNTSELLIS-YND-E---- 82 (285)
Q Consensus 10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s-~~d-~---- 82 (285)
+|++. +..++.|+.+|.|.+.+-.-.. +..| ..+... |+.+....+..+|++ +.| +
T Consensus 30 c~~s~-~~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 30 CCSSS-TGSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred EEcCC-CceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 46674 4799999999999888754221 1111 344444 444444444467777 653 3
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCc---eEee--cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---C-C
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---G-G 153 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~-~ 153 (285)
.++||++....+..+ ..++ +.+. ...++.++..++. +.+-+.+|+|-.+|.|..+.-+ . +
T Consensus 93 llkiw~lek~~~n~s----------P~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNS----------PQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEEEecccccCCCCC----------cceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence 599999976522111 1233 2221 1222344777876 7888999999999999998522 1 2
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
....-...-..+|+.+++..+++.++.+.....|.+|.+.+.. ...+..+...+.+......... ++++ .+..+.+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca-~~e~l~f 239 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICA-GSEFLYF 239 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEe-cCceEEE
Confidence 2121122235799999999888874444455789999997555 2224444444444433222222 3332 3445777
Q ss_pred EEeccc
Q 023246 232 LRLQRR 237 (285)
Q Consensus 232 wd~~~~ 237 (285)
|+....
T Consensus 240 Y~sd~~ 245 (933)
T KOG2114|consen 240 YDSDGR 245 (933)
T ss_pred EcCCCc
Confidence 776544
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=3.1e-05 Score=64.62 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=57.5
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 81 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d 81 (285)
+.+|.|++++|+. ..|+.|+.||+|.+||...+... + ..+.-.++.++|+|+|.++++++ .
T Consensus 259 ~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~-----------~------~ka~~~P~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL-----------L------AKAEFIPTLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee-----------e------eeecccceEEEEcCCCcEEEEEcCC
Confidence 3578899999975 89999999999999999765311 0 12233578899999999998876 6
Q ss_pred CcEEEEEcCCC
Q 023246 82 ELVYLFEKNMG 92 (285)
Q Consensus 82 ~~i~iwd~~~~ 92 (285)
|.+.+||+.-.
T Consensus 321 GelQ~FD~ALs 331 (545)
T PF11768_consen 321 GELQCFDMALS 331 (545)
T ss_pred ceEEEEEeecC
Confidence 99999999754
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=4.4e-05 Score=66.74 Aligned_cols=162 Identities=12% Similarity=0.142 Sum_probs=105.2
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
|--..+..+|+++. +..+...-.... +.-++ .+++++.+|...|+|.+-|.++.+.+++
T Consensus 154 g~Q~~li~~Dl~~~----------------~e~r~~~v~a~~--v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht 212 (1118)
T KOG1275|consen 154 GLQEKLIHIDLNTE----------------KETRTTNVSASG--VTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHT 212 (1118)
T ss_pred chhhheeeeecccc----------------eeeeeeeccCCc--eEEEE---ecCcEEEeecccceEEeecCCcCceeee
Confidence 34555667777665 344433333222 55444 4789999999999999999999999999
Q ss_pred EecccccceEeEEcCCCCeEEEEec---------CCcEEEEcCCCCCC-CCCCCCcccc-eeeccccCCCceEEEeCCCC
Q 023246 159 MVGDRHVVNQLEPHPHIPMFATCGI---------EKTVKLWAPMPTDF-PPLPDNAEKI-MKANKQGREDHSRITLTPDV 227 (285)
Q Consensus 159 ~~~h~~~v~~~~~~p~~~~l~t~~~---------d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~s~d~ 227 (285)
+.+|++.|.++. -.|+.|++||. |..|++||++..+. ..+.-+..+- +.. -+.-...++..+..|
T Consensus 213 ~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf--~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 213 FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF--HPSLTTRLAVTSQSG 288 (1118)
T ss_pred eeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh--cccccceEEEEeccc
Confidence 999999997654 47889999985 45689999987652 2222122221 111 111223455667777
Q ss_pred eEEEEE---eccc-----------ccceeEeeeccccccCCCCCcCeEEEee
Q 023246 228 IMHVLR---LQRR-----------QTLAYRERRYNAADFESDEEEGETYLLG 265 (285)
Q Consensus 228 ~i~vwd---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 265 (285)
+..+-| +.+. ..+..+..++++..++.++.+|.|-++.
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 777766 2222 2244556777777777777777776665
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.8e-05 Score=67.08 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=93.1
Q ss_pred CCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEE
Q 023246 59 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l 136 (285)
.|...|.--+++..+++++-| +-|.+++|+-..+ ....++. -... +.++...+++..++
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~--~~~~~~vs~~e~lv 91 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATG--ITCVRSVSSVEYLV 91 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccc--eEEEEEecchhHhh
Confidence 355667777788888899887 5899999998776 2222222 1211 33333348889999
Q ss_pred EEecCCCeEEEEecCCCceE-----EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-----CCCCCCCCcc
Q 023246 137 MSGSDCGHLFIWKKKGGKLV-----RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLPDNAE 205 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~-----~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~ 205 (285)
+.|+..|.|.++-+..+.+- ... +.|...|++++|++++..+.+|...|+|.+-.+... +.+.+.....
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 99999999999987764331 111 247789999999999999999999999998887662 1233333445
Q ss_pred cceeecc
Q 023246 206 KIMKANK 212 (285)
Q Consensus 206 ~~~~~~~ 212 (285)
.++.+..
T Consensus 172 ~IVQlD~ 178 (726)
T KOG3621|consen 172 EIVQLDY 178 (726)
T ss_pred ceEEeec
Confidence 5555533
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.8e-05 Score=61.90 Aligned_cols=159 Identities=12% Similarity=0.142 Sum_probs=108.8
Q ss_pred ceeEEEEcCCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCC---CEEEEe
Q 023246 5 RLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTS---ELLISY 79 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~---~~l~s~ 79 (285)
.|.+++.+-++ .++.+++. |..++++|+..-....-++... + .+ .+.| ...| ..++.+
T Consensus 55 ~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~---------l----Pg---~a~wv~skGd~~s~IAVs 117 (558)
T KOG0882|consen 55 VILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVD---------L----PG---FAEWVTSKGDKISLIAVS 117 (558)
T ss_pred HHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccccc---------C----CC---ceEEecCCCCeeeeEEee
Confidence 45667777875 88999787 9999999998765432222111 1 11 1222 2233 144444
Q ss_pred --cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-----
Q 023246 80 --NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----- 152 (285)
Q Consensus 80 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----- 152 (285)
.++.+.++|-.... .+....-.-|.++ |..+.+ .+.+..+++....|.|..|..+.
T Consensus 118 ~~~sg~i~VvD~~~d~--------------~q~~~fkklH~sP--V~~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDF--------------CQDGYFKKLHFSP--VKKIRY-NQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred cccCCCcEEECCcCCc--------------CccceecccccCc--eEEEEe-eccccceeeccccceeEeecCCCcccCc
Confidence 48999999987652 0222333456655 999997 89999999999999999999872
Q ss_pred -CceEEEE---------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 153 -GKLVRLM---------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 153 -~~~~~~~---------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
.+....+ ........++.|+|++..+.+-+.|..|+++..+++++
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 1111111 22345678999999999999999999999999988764
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.17 E-value=0.00089 Score=52.01 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=88.1
Q ss_pred EEEEec-CCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC
Q 023246 66 GLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 143 (285)
Q Consensus 66 ~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 143 (285)
++.|.+ ++.++++. ..+.|+.|+..++ ....+.... ...+.+..+++.++++. ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------~~~~~~~~~----~~G~~~~~~~g~l~v~~-~~- 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------EVEVIDLPG----PNGMAFDRPDGRLYVAD-SG- 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------EEEEEESSS----EEEEEEECTTSEEEEEE-TT-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------eEEEEecCC----CceEEEEccCCEEEEEE-cC-
Confidence 678988 66777775 5899999999875 333333222 55666623666655554 33
Q ss_pred eEEEEecCCCceEEEEec-----ccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCCCCCCCCCCCcccceee
Q 023246 144 HLFIWKKKGGKLVRLMVG-----DRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPTDFPPLPDNAEKIMKA 210 (285)
Q Consensus 144 ~v~vwd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~ 210 (285)
.+.++|..+++....... .....+.+++.|+|+..++.... |.|..++.. ++...+.........+
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI 139 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce
Confidence 345559888865433332 34568899999999987776643 446666666 3332221111222223
Q ss_pred ccccCCC-ceEEEeCCCCeEEEEEecccc
Q 023246 211 NKQGRED-HSRITLTPDVIMHVLRLQRRQ 238 (285)
Q Consensus 211 ~~~~~~~-~~~~~~s~d~~i~vwd~~~~~ 238 (285)
.+ .+++ .++++-+..+.|..+++....
T Consensus 140 ~~-s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 140 AF-SPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EE-ETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EE-CCcchheeecccccceeEEEeccccc
Confidence 22 3334 356688888999999987543
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.11 E-value=1.2e-05 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.5
Q ss_pred CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246 153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 191 (285)
Q Consensus 153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 191 (285)
++++..+..|...|.++.|+|.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999999999999996
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.10 E-value=0.00073 Score=56.43 Aligned_cols=214 Identities=7% Similarity=-0.027 Sum_probs=114.7
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..++.++.+|.+..+|..+++.....+...++ ...+ .. .++..++...++.++-+|..++
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP----~v-~~~~v~v~~~~g~l~ald~~tG---- 180 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRP----VV-SDGLVLVHTSNGMLQALNESDG---- 180 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCC----EE-ECCEEEEECCCCEEEEEEccCC----
Confidence 46677888999999999999865443222110 0111 11 1444555556889999999887
Q ss_pred CCCCCCccccCCCCceEeecccCcee---eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc-------cc
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV 166 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-------~v 166 (285)
+.+-.+........ ...... .+..++.++.+|.+..+|..+|+.+........ ..
T Consensus 181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 34433332110000 011111 123466677889999999999987765431110 01
Q ss_pred eEeEEcC--CCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 167 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 167 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
..+.-+| .+..++.++.++.+..+|+.+++.. +.. .. ..... ...+..++.++.++.++.+|..+++.+-..
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 1111122 2456666778899999999877631 111 00 00000 112346677788899999988776543211
Q ss_pred ee-------ec--cccccCCCCCcCeEEEeecCCCC
Q 023246 244 ER-------RY--NAADFESDEEEGETYLLGFSDSD 270 (285)
Q Consensus 244 ~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~ 270 (285)
.. +| ....+...+.+|.+++++..+|+
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 10 00 01112223445667777766654
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.09 E-value=0.0016 Score=54.36 Aligned_cols=194 Identities=11% Similarity=0.001 Sum_probs=106.7
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..++.++.++.+..+|..+++.........+... . .+...++ .. ++..++...++.+..+|..++
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~sP~----v~-~~~v~~~~~~g~v~a~d~~~G---- 225 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----L-RGESAPA----TA-FGGAIVGGDNGRVSAVLMEQG---- 225 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----c-cCCCCCE----EE-CCEEEEEcCCCEEEEEEccCC----
Confidence 4566778889999999999986544332211000 0 1111121 11 334555556888888888776
Q ss_pred CCCCCCccccCCCCceEeecccC--ce---eeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEe
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRN--SQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 169 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 169 (285)
+..-.+..... .. ....+.. +| .+..++.++.+|.+..+|..+|+.+..... .....+
T Consensus 226 ------------~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~ 290 (394)
T PRK11138 226 ------------QLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF 290 (394)
T ss_pred ------------hhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc
Confidence 22222110000 00 0000110 11 245666777889999999999988765532 112222
Q ss_pred EEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246 170 EPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
.. .+..+..++.++.+..+|..+++. -+........... . ...+..++.++.+|.++.+|..+++.+....
T Consensus 291 ~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~s-p-~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 291 AV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTA-P-VLYNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccC-C-EEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 22 355677778899999999987753 1111101111000 0 0124467888999999999998887665443
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.02 E-value=0.00043 Score=62.65 Aligned_cols=171 Identities=11% Similarity=0.132 Sum_probs=98.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEc----cCCcccC--------Cc--CCCCCccccc---c----ccc------
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDI----RKCHWYS--------PI--SSDTPVDTFC---P----RHL------ 56 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~----~~~~~~~--------~~--~~~~~~~~~~---~----~~~------ 56 (285)
.+|.+++||||. ..++..+.++++.+-+- -.-+.+. .. .-...-..|. - ...
T Consensus 110 ~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 110 NGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred CceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 578999999985 88888888888777543 1111110 00 0000000000 0 000
Q ss_pred CC--CCCcceEEEEEecCCCEEEEe-----cC-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE
Q 023246 57 IG--KNNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 128 (285)
Q Consensus 57 ~~--~h~~~v~~i~~s~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 128 (285)
.. .-...=+.|.|-.||+++|++ .+ ..|+|||.... +........ ..-.+++
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~------------------Lns~se~~~-~l~~~Ls- 248 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA------------------LNSTSEPVE-GLQHSLS- 248 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch------------------hhcccCccc-cccccee-
Confidence 00 011223469999999998873 35 78999998722 111111111 1134566
Q ss_pred ecCCCcEEEEec---CCCeEEEEecC---CCceEEEEecccccceEeEEcCCCCeEEE---EecCCcEEEEcCCCC
Q 023246 129 FGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPT 195 (285)
Q Consensus 129 ~~~~~~~l~~~~---~dg~v~vwd~~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~t---~~~d~~i~iwd~~~~ 195 (285)
|-|.|..+++-. .|+.|.+|..+ .|+....+.....+|..++|+.++..|+. ......|++|-+.+.
T Consensus 249 WkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 249 WKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 489998888743 35678888754 23333333444455999999999998777 344445999987654
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.00 E-value=0.0041 Score=48.91 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=91.9
Q ss_pred EEEcCCCCcEEEEee-----CCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 9 IVIDPRNPNYFAVGG-----SDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 9 ~~~s~~~~~~l~tg~-----~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
-.||||+ ++|++.- ..|.|-|||...+ + ....+ ..|.-....+.+.|+|+.|+.++.|
T Consensus 56 g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~--------------ri~E~-~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 56 GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYR--------------RIGEF-PSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcE--------------EEeEe-cCCCcChhhEEEcCCCCEEEEEcCC
Confidence 4689986 6777653 3589999999832 2 11111 4455556678899999877765433
Q ss_pred c--------EEEEEcCCCCCCCCCCCCCccccCCCCceE--e--ecccCceeeeeEEEecCCCcEEEEecCCCe------
Q 023246 83 L--------VYLFEKNMGLGPSPLSLSPEDLQKREEPQV--Y--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGH------ 144 (285)
Q Consensus 83 ~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~------ 144 (285)
. .++ ++.+. ..++..-+..+.+.+.. + ..|+.. |..+++ ..+|..++..-..|.
T Consensus 120 I~Thpd~GR~kL-Nl~tM----~psL~~ld~~sG~ll~q~~Lp~~~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 120 IETHPDSGRAKL-NLDTM----QPSLVYLDARSGALLEQVELPPDLHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPP 191 (305)
T ss_pred CccCcccCceec-Chhhc----CCceEEEecCCCceeeeeecCccccccc--eeeEEe-cCCCcEEEEEecCCCCCccCC
Confidence 2 111 11111 01111111111234444 3 124434 888885 777765554433221
Q ss_pred -EEEEecCCCceEEEEe-------cccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCCCCC
Q 023246 145 -LFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPP 199 (285)
Q Consensus 145 -v~vwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~~~ 199 (285)
|.+++. ++.+..+. .-.+.+-+|++++++.+++ |+-.-+.+.+||..++.+..
T Consensus 192 Lva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 192 LVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred eEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 333332 33232222 1235788999999998865 44467799999998887533
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0017 Score=56.91 Aligned_cols=167 Identities=12% Similarity=0.164 Sum_probs=102.7
Q ss_pred CcEEEEeeCCC-----cEEEEEccCCcccCCcCCCCCcccccccc-cCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246 16 PNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSELLISY-NDELVYLFE 88 (285)
Q Consensus 16 ~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd 88 (285)
.++|++.+.|+ .|+||++...+.... +..+....... .......++.+++.+.+-+.+|+| .+|.|..+.
T Consensus 77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred ceEEEEEeecCCCCceEEEEecccccCCCCC---cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 36777766654 489999986531110 11111111111 112246688999999998888888 599998885
Q ss_pred cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EEEEecccccce
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVN 167 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~ 167 (285)
-.-. +. +..+.-..|....+|+++.+ ..+++.++-+..-..|.+|.+....+ ...+..|...++
T Consensus 154 GDi~-------------RD-rgsr~~~~~~~~~pITgL~~-~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln 218 (933)
T KOG2114|consen 154 GDIL-------------RD-RGSRQDYSHRGKEPITGLAL-RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLN 218 (933)
T ss_pred Ccch-------------hc-cccceeeeccCCCCceeeEE-ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccce
Confidence 4321 11 12233334555566999998 55665523333346788999884432 344667888999
Q ss_pred EeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCC
Q 023246 168 QLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 201 (285)
Q Consensus 168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 201 (285)
|..+++....|+.++ +..+.+|+..... ..++.
T Consensus 219 Css~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 219 CSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 999998666555555 4579999987654 34454
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=4.4e-06 Score=70.00 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=99.5
Q ss_pred ceeEEEEcCCCCcEEEEee----CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246 5 RLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 80 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 80 (285)
+.++++|++-+.+.||+|- .|-.+.|||+.++-.. |....... .+-.....+++|-.+.+++.+|.
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke~~~fs---~~~l~gqns~cwlrd~klvlaGm 173 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKESPLFS---SSTLDGQNSVCWLRDTKLVLAGM 173 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Cccccccc---cccccCccccccccCcchhhccc
Confidence 5678999997667888884 3678999999877321 11111111 11233455888988888888875
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEe-cCCCc-eE
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWK-KKGGK-LV 156 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd-~~~~~-~~ 156 (285)
...++++|++... .....+. + +.+..+.. +| .++++++-. ||.|.+|| .+.-+ ++
T Consensus 174 ~sr~~~ifdlRqs~---------------~~~~svn--T--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSL---------------DSVSSVN--T--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred ccchhhhhhhhhhh---------------hhhhhhh--h--hhccccee-cCCCCCceeccc-cCceeeccchhhhccHH
Confidence 7799999997431 1112221 1 12555665 66 677777655 99999999 43322 33
Q ss_pred EEEeccc----ccceEeEEcCCCCe-EEEEecC-CcEEEEcCC
Q 023246 157 RLMVGDR----HVVNQLEPHPHIPM-FATCGIE-KTVKLWAPM 193 (285)
Q Consensus 157 ~~~~~h~----~~v~~~~~~p~~~~-l~t~~~d-~~i~iwd~~ 193 (285)
..+.... ..+..++|+|...- +++...| ++|+++++.
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 3332222 24899999997654 6666644 689999974
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.0032 Score=52.18 Aligned_cols=223 Identities=13% Similarity=0.191 Sum_probs=111.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccC------CcC----------------------CCCCcccccccc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS------PIS----------------------SDTPVDTFCPRH 55 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~------~~~----------------------~~~~~~~~~~~~ 55 (285)
-.|+.+.|+++. .-|++|...|.|.||.....+... ... .+..-..|.+..
T Consensus 2 ~~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 2 VSVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp --EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred ceEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 468999999975 788899999999999876554322 000 000012344455
Q ss_pred cCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee------cccCceeeeeEEEe
Q 023246 56 LIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFF 129 (285)
Q Consensus 56 ~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~ 129 (285)
++....++|++++.|.=|-..+...+|.+.|.|++.+ ..+..-. .+.....++++.|.
T Consensus 81 l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp EE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEE
T ss_pred heeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEE
Confidence 5556688999999985554444456999999999765 2222211 11112236666651
Q ss_pred ----cCCC---cEEEEecCCCeEEEEecCC---Cce----EEEEecccccceEeE-EcCC--------------------
Q 023246 130 ----GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH-------------------- 174 (285)
Q Consensus 130 ----~~~~---~~l~~~~~dg~v~vwd~~~---~~~----~~~~~~h~~~v~~~~-~~p~-------------------- 174 (285)
..++ -.+++|+..|.+.+|.+.. +.. ......+.++|..+. ++.+
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2232 5788899999999998641 211 111123455655554 2211
Q ss_pred CCeEEEEecCCcEEEEcCCCCCC--CCCCCC-cccceeeccc--cCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 175 IPMFATCGIEKTVKLWAPMPTDF--PPLPDN-AEKIMKANKQ--GREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 175 ~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~-~~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
-+.++....+..+|++.+-..+. +.+... .......... ......+++...+|.++++.+..-+.+...
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 12234444477899998865542 222110 0011111000 123447888999999999998876655544
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00019 Score=57.22 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=68.0
Q ss_pred CCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCc
Q 023246 109 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT 186 (285)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~ 186 (285)
+....+..+.. .|.+++| +|..+ ++..++.+..|++.|+++...+..+..| ..+.+++|+-+... +..|-..|.
T Consensus 184 kssq~lp~~g~--~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGS--FIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccch--hhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 33444555553 4999998 88776 7888999999999999999888888887 78999999988766 666778899
Q ss_pred EEEEcCCCCC
Q 023246 187 VKLWAPMPTD 196 (285)
Q Consensus 187 i~iwd~~~~~ 196 (285)
|.+||++..+
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999997654
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0035 Score=48.28 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.+.+++|+|++..++++....+.|..++.. |+.+..+. + .+ .+..-.|++..++.++++.. ++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------------l-~g-~~D~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------------L-DG-FGDYEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------------SS--SSEEEEEE-STTEEEEEETTTTE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe------------C-CC-CCCceeEEEECCCEEEEEEcCCCc
Confidence 488999999876788888888888888864 55322211 1 22 34577899988888888764 899
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEee--cc-cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC---CceEE
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVR 157 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~ 157 (285)
+.++++....... .. .....+. .. .....+-.++| ++.++.++.+-+..-..+|.++. ...+.
T Consensus 88 L~~~~~~~~~~~~----~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 88 LYIFTIDDDTTSL----DR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp EEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred EEEEEEecccccc----ch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 9999985431000 00 0111222 11 12233889997 88877777776666666666543 22222
Q ss_pred EE--e------cccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC
Q 023246 158 LM--V------GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 158 ~~--~------~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~ 195 (285)
.. . .....+.+++++|... +++.......|..+|..+.
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 11 1 1234578899999654 5666777888888986554
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0034 Score=52.52 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=89.7
Q ss_pred cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~- 79 (285)
..+..-+|+|++..+.+..-.. ..+.++++.+++...... ..+.-...+|+|+|+.|+-+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------------~~g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------------FNGNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----------------cCCccCCccCCCCCCEEEEEE
Confidence 3455667888875544443333 348888888876321111 12233357899999866653
Q ss_pred -cCC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCC
Q 023246 80 -NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGG 153 (285)
Q Consensus 80 -~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~ 153 (285)
.|+ .|+++|+... . ...+..... +..--.|+|+|++++-.++ .| .|++++++.+
T Consensus 257 ~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 257 SRDGSPDIYLMDLDGK----------------N-LPRLTNGFG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CCCCCccEEEEcCCCC----------------c-ceecccCCc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 355 4677777765 2 222332222 2222236999999877654 33 4777777755
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEec-CCc--EEEEcCCCCC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD 196 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~--i~iwd~~~~~ 196 (285)
+. ..+......-..-.|+|+|++++..+. +|. |.+.++..+.
T Consensus 317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 54 333322222236789999999877764 344 5556654443
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.79 E-value=0.0021 Score=42.22 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=64.2
Q ss_pred eeEEEEc---CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 6 LNAIVID---PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 6 v~~~~~s---~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
|+++++. -++.+-|++|+.|..||+|+-..-- ..+ .-+..|+.++-...+++..+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~Ei--~e~~~v~~L~~~~~~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AEI--TETDKVTSLCSLGGGRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EEE--ecccceEEEEEcCCCEEEEEecCC
Confidence 5666654 4566899999999999999865221 111 124568888877776655556799
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC---cEEEEecCCCeEE
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF 146 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~v~ 146 (285)
+|-+|+-... ..+.-..+. +.++.+.+.++ ..|++|=.+|.|-
T Consensus 64 TVGvY~~~~R-----------------lWRiKSK~~----~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQR-----------------LWRIKSKNQ----VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcce-----------------eeeeccCCC----eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999986432 222222222 55665444443 3677787777764
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00044 Score=60.52 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=58.2
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.+++++|+|.. ..|+.|-.-|.+.+|...+.+ ..+....|..+|..+.||++|..+.++. -|.
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~ 124 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGS 124 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCCce
Confidence 45689999964 788889889999999987664 3334467999999999999999999975 899
Q ss_pred EEEEEcC
Q 023246 84 VYLFEKN 90 (285)
Q Consensus 84 i~iwd~~ 90 (285)
+.+|...
T Consensus 125 v~lwr~d 131 (1416)
T KOG3617|consen 125 VHLWRYD 131 (1416)
T ss_pred eEEEEee
Confidence 9999876
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.0089 Score=45.42 Aligned_cols=149 Identities=10% Similarity=0.014 Sum_probs=95.8
Q ss_pred EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEc
Q 023246 11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEK 89 (285)
Q Consensus 11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~ 89 (285)
.-++...+++.|+..+.+.--|..+|++...-. -..++.+-+.- -|.+++.| ..|.+++.+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i----------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~ 80 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI----------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLCV 80 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh----------------hCceeeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence 344555799999999999999999987532211 11223332222 35566664 6999999999
Q ss_pred CCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEe
Q 023246 90 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 169 (285)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 169 (285)
+++ .....|..-.. ..+... .++++..+..|+.|+..+..|.++..++...+...+.-.+-
T Consensus 81 ~tG----------------s~~w~f~~~~~-vk~~a~--~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 81 KTG----------------SQIWNFVILET-VKVRAQ--CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred cch----------------hheeeeeehhh-hccceE--EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 988 45555543332 113333 37899999999999999999999999998877544444445
Q ss_pred EEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 170 EPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 170 ~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
++.|-...|..+...|.+.--..+..
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCC
Confidence 56663333444444565555555444
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.0074 Score=50.55 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=89.2
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 81 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d 81 (285)
+.++|.++.|+.+ ..|++-..||.+++||+. |+. .+.....+... .-....+....+...|-.+.+ .+
T Consensus 79 ~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~------~v~e~~i~~~~~~~~GivvLt-~~ 146 (410)
T PF04841_consen 79 DSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEE------KVLECRIFAIWFYKNGIVVLT-GN 146 (410)
T ss_pred CCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-Cce--eechhhhcccc------CcccccccccccCCCCEEEEC-CC
Confidence 3468889999884 566677899999999987 332 11111111110 111222333344444533333 34
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+.+.+..-... +....... .++ .....+........+ ..+ +.+....+....++.+.+.+....+. +.
T Consensus 147 ~~~~~v~n~~~--~~~~~~~~-~~p--~~~~~~~~~~~~~~i--~~l-~~~~~~~i~~~~g~~i~~i~~~~~~~---i~- 214 (410)
T PF04841_consen 147 NRFYVVNNIDE--PVKLRRLP-EIP--GLWTKFHWWPSWTVI--PLL-SSDRVVEILLANGETIYIIDENSFKQ---ID- 214 (410)
T ss_pred CeEEEEeCccc--cchhhccc-cCC--Ccccccccccccccc--eEe-ecCcceEEEEecCCEEEEEEcccccc---cc-
Confidence 44443322111 00000000 000 000001111110001 122 34444444445555666444332211 22
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGR 215 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~ 215 (285)
..+++..++.||+++++|.-..+|.+.+....-.+ +..+.. .........|+..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 24689999999999999999999999888754332 222211 2233445556554
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00024 Score=59.88 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=65.1
Q ss_pred eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccce-EeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+.-+.| +|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.+|.|=.||+|++.|...+.
T Consensus 23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 677774 9999999999999999999998 889999987777777 99999999999999999999999997765
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.017 Score=49.95 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=58.1
Q ss_pred CCeEEEEecCC-----CceEEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCC-------------CCCCC
Q 023246 142 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDF-------------PPLPD 202 (285)
Q Consensus 142 dg~v~vwd~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~-------------~~~~~ 202 (285)
++.|.+.|..+ .+.+..+.. ......++++|||++++.+ ..+.++.+.|++..+. .+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 46688888877 345555543 4567889999999995554 5689999999876431 01111
Q ss_pred CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246 203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~ 236 (285)
...++ ...+ ...+....+.--|.+|-.|++..
T Consensus 374 GlGPL-HTaF-Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPL-HTAF-DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcc-eEEE-CCCCCEEEeEeecceeEEEehHH
Confidence 11111 1111 12234667778899999999887
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.017 Score=48.40 Aligned_cols=156 Identities=11% Similarity=0.091 Sum_probs=86.1
Q ss_pred CcceEEEEEecCCCEEEEe---c-C-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246 61 NIHITGLAYSNTSELLISY---N-D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~---~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (285)
...+..-+|+|+++.++-. . . ..+.++++..+ +....+. .... -..-+| +|+|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g----------------~~~~i~~-~~g~--~~~P~f-spDG~~ 251 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG----------------KRPVILN-FNGN--NGAPAF-SPDGSK 251 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCC----------------ccceeec-cCCc--cCCccC-CCCCCE
Confidence 3456677899999855442 2 3 46999999887 2222222 1111 233454 999987
Q ss_pred EEE-ecCCCe--EEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCccccee
Q 023246 136 VMS-GSDCGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMK 209 (285)
Q Consensus 136 l~~-~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 209 (285)
++- ...||. |+++|+..++ +..+..-.+.-..-.|+|+|++++-.+. .| .|.++++++.....+......-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence 755 444554 7777888666 3334433333336689999999776653 34 567777777655333222211112
Q ss_pred eccccCCCceEEEeC-CCCe--EEEEEecccc
Q 023246 210 ANKQGREDHSRITLT-PDVI--MHVLRLQRRQ 238 (285)
Q Consensus 210 ~~~~~~~~~~~~~~s-~d~~--i~vwd~~~~~ 238 (285)
.. +++++++++..+ .+|. |.+.++.+..
T Consensus 331 p~-~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PV-WSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cc-CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 22 344444444333 3454 5555554443
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.64 E-value=0.0034 Score=54.09 Aligned_cols=113 Identities=7% Similarity=-0.049 Sum_probs=68.8
Q ss_pred cceEEEEEecCCCEEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 62 IHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 62 ~~v~~i~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
.....+.++|||++++.++ +.+|.|.|+.+........+... ........-.. .....+| +++|+...+-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~----~~vvaevevGl---GPLHTaF-Dg~G~aytsl 392 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR----DAVVAEPELGL---GPLHTAF-DGRGNAYTTL 392 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc----ceEEEeeccCC---CcceEEE-CCCCCEEEeE
Confidence 3566889999999887743 99999999987521111110000 00122222211 1445676 8899888888
Q ss_pred cCCCeEEEEecCC----------CceEEEEecccccceE-----eEEcCCCCeEEEEe
Q 023246 140 SDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQ-----LEPHPHIPMFATCG 182 (285)
Q Consensus 140 ~~dg~v~vwd~~~----------~~~~~~~~~h~~~v~~-----~~~~p~~~~l~t~~ 182 (285)
.-|..|..|++.. ...+..+..|.++-.- =.-.|+|++|++..
T Consensus 393 f~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 393 FLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 8999999999875 2344445444333221 12367888888775
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.012 Score=45.49 Aligned_cols=186 Identities=14% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCcceEEEEEecCCCEEE-Eec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 59 KNNIHITGLAYSNTSELLI-SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
+-...+..++|.|+...|+ ... .+.|..++.. + +.++.+.-... .-.-++++ -.++.++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G----------------~vlr~i~l~g~-~D~EgI~y-~g~~~~v 79 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G----------------KVLRRIPLDGF-GDYEGITY-LGNGRYV 79 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------------EEEEEE-SS--SSEEEEEE--STTEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C----------------CEEEEEeCCCC-CCceeEEE-ECCCEEE
Confidence 3344699999999876444 454 7888888865 3 35555543221 12678887 6778888
Q ss_pred EEecCCCeEEEEecCCCc------eEEEEe-----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCC--C-C-CC---
Q 023246 137 MSGSDCGHLFIWKKKGGK------LVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--T-D-FP--- 198 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~------~~~~~~-----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~--~-~-~~--- 198 (285)
++--.++.+.++++.... ....+. .++..+-.++|+|.++.|+.+-+..-.++|.++. . . +.
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 877779999999884321 112221 2456689999999988877777776677776644 1 1 10
Q ss_pred --CCC---CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeec----------cccccCCCCCcCeEEE
Q 023246 199 --PLP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY----------NAADFESDEEEGETYL 263 (285)
Q Consensus 199 --~~~---~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~ 263 (285)
.+. .....+-.+......+.+++....+..|..+| ..++.+..+.... ....++.+ .+|.+|+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEE
Confidence 000 01111111211222345666666777777777 4444444432221 12233333 3567888
Q ss_pred ee
Q 023246 264 LG 265 (285)
Q Consensus 264 ~~ 265 (285)
++
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 76
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.00014 Score=63.88 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=92.3
Q ss_pred CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC--Cc
Q 023246 109 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KT 186 (285)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d--~~ 186 (285)
+.++.|..+... .++++| +-..++++.|+..|.|++|++.+|........|++.|+.+.-+.+|.++++.+.- -.
T Consensus 1092 r~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 456777777755 899998 8999999999999999999999999999999999999999999999986665532 25
Q ss_pred EEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246 187 VKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 242 (285)
Q Consensus 187 i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~ 242 (285)
..+|++... ..+++..... +. .+......+.|.......+||+++.+.+.+
T Consensus 1169 saLW~~~s~~~~~Hsf~ed~~--vk---Fsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDEDKA--VK---FSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred HHHhccccccCccccccccce--ee---hhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 678998542 2334432111 11 111222345566667788999998877655
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.49 E-value=0.0032 Score=56.18 Aligned_cols=140 Identities=11% Similarity=0.189 Sum_probs=85.0
Q ss_pred eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec------CCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 23 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------TSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 23 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~------~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
.....|+-.|+..|+.+..|+.... .+|..++=.. ....|+.-+++.+..||.+...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--------------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--- 563 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--------------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--- 563 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--------------cceeEecccccccccCCCceEEEECCCceEEeccCCCC---
Confidence 4567888889998886655543321 1233322111 1235566678999999998541
Q ss_pred CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCC
Q 023246 97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 176 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 176 (285)
..+. ....+.+. .. ....|++ .....+||.|+.+|.|++||.-..+....+.+-..+|..|..+.||+
T Consensus 564 ------~k~v-~~~~k~Y~-~~--~~Fs~~a--Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 564 ------NKLV-DSQSKQYS-SK--NNFSCFA--TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred ------Ccee-eccccccc-cC--CCceEEE--ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc
Confidence 0000 00111221 11 2266666 34555899999999999999543333344556678999999999999
Q ss_pred eEEEEecCCcEEEEcC
Q 023246 177 MFATCGIEKTVKLWAP 192 (285)
Q Consensus 177 ~l~t~~~d~~i~iwd~ 192 (285)
+++..+ +..+.+++.
T Consensus 632 wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 632 WILATC-KTYLLLIDT 646 (794)
T ss_pred EEEEee-cceEEEEEE
Confidence 966555 356667664
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.013 Score=38.65 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred eeeEEEecCC---CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC
Q 023246 123 VKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP 199 (285)
Q Consensus 123 i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~ 199 (285)
|.++++.+-+ .+.|+.|++|..|++|+-. +.+..+.. ...|.+++-... ..|+.+-.+|+|.+|+-..... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-R 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-R 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee-e
Confidence 4555543322 3689999999999999864 67777775 457888877665 5688899999999997644332 2
Q ss_pred CCCCcccceeeccccC---CCceEEEeCCCCeEE
Q 023246 200 LPDNAEKIMKANKQGR---EDHSRITLTPDVIMH 230 (285)
Q Consensus 200 ~~~~~~~~~~~~~~~~---~~~~~~~~s~d~~i~ 230 (285)
.+.... +.++..... ...-+++|-.+|.|-
T Consensus 77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222 333322222 223577787787764
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0012 Score=59.25 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=71.3
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 95 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~ 95 (285)
..++.|+..|.+-..|+...- ++.+.-..-.++|++++|+.+|.+++.| .+|.|.+||+..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--- 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--- 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence 578888888888888876431 2222213346799999999999999988 5999999999987
Q ss_pred CCCCCCCccccCCCCceEeecccCcee-eeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246 96 SPLSLSPEDLQKREEPQVYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKK 150 (285)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 150 (285)
+.++.+..+..+.. +..+.+ ...+..++++...|. +|.+
T Consensus 163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEEE
Confidence 67777776665421 344443 445557888888786 4543
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.44 E-value=0.00046 Score=35.48 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=30.9
Q ss_pred CceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246 110 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149 (285)
Q Consensus 110 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 149 (285)
....+..|... +.++.| .+.++++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGP--VTSVAF-SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCc--eeEEEE-CCCCCEEEEecCCCeEEEcC
Confidence 45666667755 999997 88889999999999999996
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.001 Score=56.26 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=73.6
Q ss_pred CcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeee-eEEEecCCCcEEEE
Q 023246 61 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS 138 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~ 138 (285)
...+.-+.|+|.-.++|... +|.|.+..++- +.+.++..+... ++ +++| .|+|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV 79 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV 79 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence 34677899999999999964 99999998873 466777655543 55 8885 999999999
Q ss_pred ecCCCeEEEEecCCCceEEEEe-cccccceEeEEcC
Q 023246 139 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP 173 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~p 173 (285)
|-.||+|++.|.+++..+.... .....|.++-|.|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999998877632 2346788888874
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.056 Score=44.99 Aligned_cols=200 Identities=10% Similarity=0.075 Sum_probs=120.7
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--e--cCC
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--Y--NDE 82 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~--~d~ 82 (285)
..+++++.+.+.+++...++.|.+.|..+.+.. .....+. ....++++++++.+.. . .++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------GSIPVGL--GPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------eEeeecc--CCceEEECCCCCEEEEEecccCCc
Confidence 357788877567777777899999997665522 1111121 5668999999975444 3 268
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEE-E--
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR-L-- 158 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~-~-- 158 (285)
++.+.|..+. +.......... -..+++ +|+++.++... .++.|.+.|........ .
T Consensus 141 ~vsvid~~t~----------------~~~~~~~vG~~---P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 141 TVSVIDAATN----------------KVTATIPVGNT---PTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred eEEEEeCCCC----------------eEEEEEecCCC---cceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceeccccc
Confidence 8999998876 45555333222 267887 99999766554 78999999977555553 1
Q ss_pred --EecccccceEeEEcCCCCeEEEEec-C--CcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246 159 --MVGDRHVVNQLEPHPHIPMFATCGI-E--KTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHV 231 (285)
Q Consensus 159 --~~~h~~~v~~~~~~p~~~~l~t~~~-d--~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v 231 (285)
.. -......+.++|++.++..... + +.+...|......... ....................++-+..+.+.+
T Consensus 201 ~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 201 SLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 11 1234567899999997544433 3 5888888877664322 1111011111111222223333344577888
Q ss_pred EEecccccceeE
Q 023246 232 LRLQRRQTLAYR 243 (285)
Q Consensus 232 wd~~~~~~~~~~ 243 (285)
-|..+.......
T Consensus 280 id~~~~~v~~~~ 291 (381)
T COG3391 280 IDGATDRVVKTG 291 (381)
T ss_pred EeCCCCceeeee
Confidence 877766554443
No 349
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.40 E-value=0.019 Score=50.22 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=109.5
Q ss_pred CcEEEEeeCCC------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC------C
Q 023246 16 PNYFAVGGSDE------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------E 82 (285)
Q Consensus 16 ~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d------~ 82 (285)
+.+++.|+.++ .+..||..+++....-.. . +...-.++++.. +.+.++ |.+ .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~-~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------P-SPRCRVGVAVLN-GKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------C-cccccccEEEEC-CEEEEEccccCCCcccc
Confidence 46888888774 677888887753211110 1 111223344443 354444 446 3
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-----EEEEecCCCce--
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKL-- 155 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----v~vwd~~~~~~-- 155 (285)
.+..||.... .|..+..+...+.. . +++ .-+|...+.|+.||. +-.||..+.+-
T Consensus 350 ~ve~YD~~~~--------------~W~~~a~M~~~R~~--~-~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 350 SVERYDPRTN--------------QWTPVAPMNTKRSD--F-GVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred eEEEecCCCC--------------ceeccCCccCcccc--c-eeE--EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 4777887765 12222233322222 2 222 236778888888864 66777665442
Q ss_pred EEEEecccccceEeEEcCCCCeEEEEecCC------cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCC--
Q 023246 156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV-- 227 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-- 227 (285)
+..+.........+.+ ++...+.||.++ ++..||+.+...........+-.........+.+.+.|+.|+
T Consensus 411 va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred cCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC
Confidence 2222221222222222 567777777554 578899988764433322222111111223455667777665
Q ss_pred ---eEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246 228 ---IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 271 (285)
Q Consensus 228 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (285)
++..+|..+.+-.....-............++.+|++|-.++..
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 25556655543222211111222222223456699998755543
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.35 E-value=0.02 Score=47.52 Aligned_cols=174 Identities=12% Similarity=0.078 Sum_probs=86.9
Q ss_pred CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCC-
Q 023246 1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSE- 74 (285)
Q Consensus 1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~- 74 (285)
|++++|++++.|.- -++|.|..+|.+.|.|++....+.... +.. ..........|+++.|+. |+.
T Consensus 84 ~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~----i~~---~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 84 AKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNEN----IRE---SFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp --S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEE----GGG-----T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeecc----ccc---cccccccccCeeEEEEEEEecCCCccc
Confidence 46899999999865 499999999999999998665432210 000 112123455788898873 332
Q ss_pred --EEEEe-cCCcEEEEEcCC-CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-C----------------
Q 023246 75 --LLISY-NDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D---------------- 133 (285)
Q Consensus 75 --~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---------------- 133 (285)
.+.+| +.|.+.+|.+.- ..+ .+. .+.......+..+ +..+...+.+ +
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g----~f~------v~~~~~~~~~~~~--i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNG----RFS------VQFAGATTNHDSP--ILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-----EE------EEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred ceEEEEEeCCCCEEEEEEecCCCC----ceE------EEEeeccccCCCc--eEEEEEEECCCCCcccCchhHhhccccC
Confidence 44444 589999998752 100 000 0000111112222 4443322111 1
Q ss_pred ----cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEc-----CCCCeEEEEecCCcEEEEcCCCCC
Q 023246 134 ----EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 134 ----~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
.+++. ..+..++++...+.+..+......-....+.+- ..+..|++-..+|.|+++.+-.-+
T Consensus 223 ~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 223 ISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp ----EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCcCcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 13444 346789999988877766554222233334442 244558888899999999975543
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0032 Score=52.43 Aligned_cols=143 Identities=12% Similarity=0.165 Sum_probs=90.6
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--------EEEEecCCcEEEEE
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFE 88 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--------~l~s~~d~~i~iwd 88 (285)
-+|.++..-..++-.|+..|+.+..|+.... |+-+.+.|+.+ .|+.-++..|+-||
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC----------------cceeeccCCcchhcccccccEEeecCCceEEec
Confidence 3555666667788889998886655544332 44555555442 44555689999999
Q ss_pred cCCCCCCCCCCCCCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 166 (285)
.+-.. ...+..-+.|... ....|.+ .....+++.|+.+|.|++||.-.......+.+-..+|
T Consensus 411 pRv~~--------------~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 411 PRVQG--------------KNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred ccccC--------------cceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 87441 0112222222221 1144444 4556699999999999999974333344566777899
Q ss_pred eEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
..+..+.+|++++..+ +..+.+.++
T Consensus 475 ~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEec-ccEEEEEEE
Confidence 9999999999966555 345555554
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.00066 Score=59.46 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=81.8
Q ss_pred EEEEEecCCCEEEEe-----cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 65 TGLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 65 ~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
+-..|+|...+|+.+ ..|.|.||--... +-+... .+..+.+++| +|..-.++.|
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-----------------Pqr~Vt---~P~hatSLCW-Hpe~~vLa~g 77 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGE-----------------PQRDVT---YPVHATSLCW-HPEEFVLAQG 77 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCC-----------------CCcccc---cceehhhhcc-ChHHHHHhhc
Confidence 345788888877764 2688888853322 111111 1122667885 9988888999
Q ss_pred cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
=.-|.+.+|...+.+.-.....|..+|..+.|+|+|..++|+..-|.+.+|...
T Consensus 78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999998776666666799999999999999999999999999999864
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.00097 Score=49.42 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=59.3
Q ss_pred CEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246 74 ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 152 (285)
Q Consensus 74 ~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 152 (285)
..+++ +.+|.|.+|...... .....+...... ....+.- ..++.+..++..+|.|+.|++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g---------------~~~d~~~s~~e~-i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG---------------AHSDRVCSGEES-IDLGIPN-GRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred ceEEeecccceEEEecCCccc---------------hHHHhhhccccc-ceecccc-ccccceeEEeccCCceeeecccc
Confidence 34555 569999999986321 111111111111 1222321 34556888999999999999998
Q ss_pred CceEEEEeccc-ccceEeEEcCCCCeEEEE--ecCCcEEEEcCC
Q 023246 153 GKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPM 193 (285)
Q Consensus 153 ~~~~~~~~~h~-~~v~~~~~~p~~~~l~t~--~~d~~i~iwd~~ 193 (285)
.+.+-....|. .++..+..+..++.++.+ |.|..++.|++.
T Consensus 134 ~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 88877666676 444444444444455544 555555555543
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.03 Score=50.24 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=55.6
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 83 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~ 83 (285)
...+|++-+.+| +||+|+.+|.||+||- .+. ..++.+.+-..+|..|..+.||+++++..+..
T Consensus 578 ~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~--------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 578 NNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK--------------RAKTALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred CCceEEEecCCc--eEEEEeCCCcEEeecc-cch--------------hhhhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 345677777754 9999999999999993 233 34445567788999999999999999988888
Q ss_pred EEEEEcC
Q 023246 84 VYLFEKN 90 (285)
Q Consensus 84 i~iwd~~ 90 (285)
|.+++..
T Consensus 641 LlLi~t~ 647 (794)
T PF08553_consen 641 LLLIDTL 647 (794)
T ss_pred EEEEEEe
Confidence 9998875
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.27 E-value=0.0011 Score=36.33 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.2
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 37 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~ 37 (285)
.+|.+++|+|+. .++|.|+.+|.|.+|.+ +++
T Consensus 12 ~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence 478999999985 89999999999999999 443
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.27 E-value=0.014 Score=47.33 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV 160 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 160 (285)
|.|.++++.... .....+..+..+..+.+|++++-+ ++.++++. .+.|++|++...+ ....-.
T Consensus 62 Gri~v~~i~~~~------------~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESP------------ENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----------------EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEccc------------ccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhhe
Confidence 889999998620 000122322222223348888853 55544433 4889999998777 443332
Q ss_pred c-ccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 161 G-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 161 ~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
. ....+.++.. .+++++.|..-+.+.++..+ ...+..+.. ....+........+ ..++.+..+|.+.++...
T Consensus 126 ~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 126 YDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred ecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 2 1224455544 46688889888888877443 332222211 12223333222123 488889999999999887
Q ss_pred c
Q 023246 236 R 236 (285)
Q Consensus 236 ~ 236 (285)
.
T Consensus 203 ~ 203 (321)
T PF03178_consen 203 P 203 (321)
T ss_dssp S
T ss_pred C
Confidence 3
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.22 E-value=0.12 Score=45.53 Aligned_cols=66 Identities=8% Similarity=0.109 Sum_probs=40.9
Q ss_pred eeeEEEecCCCcEEEEecCCCeEEE---EecCCCce-E---EEEec-ccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246 123 VKGVNFFGPNDEYVMSGSDCGHLFI---WKKKGGKL-V---RLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWA 191 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~dg~v~v---wd~~~~~~-~---~~~~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 191 (285)
|..+.| +|+|..++... +|.|++ -....|+. + ..+.. -...+.++.|.+++..+ .+..++...+|.
T Consensus 450 Issl~w-SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 450 ISELQL-SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cCeEEE-CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 999996 99999887765 478877 44444541 1 11222 22346889999998854 444444444454
No 358
>PHA02713 hypothetical protein; Provisional
Probab=97.22 E-value=0.028 Score=49.23 Aligned_cols=92 Identities=2% Similarity=0.058 Sum_probs=44.7
Q ss_pred eEEEEecCCCce--EEEEecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCC-CCCCCCCCCcccceeecccc
Q 023246 144 HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQG 214 (285)
Q Consensus 144 ~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 214 (285)
.+..||..+.+- +..+.........+++ +++..+.|+.+ ..+..||+.+ ...........+........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 477788776543 2222211112112222 45666667654 2467899987 55432222221211121222
Q ss_pred CCCceEEEeCCCC--eEEEEEeccc
Q 023246 215 REDHSRITLTPDV--IMHVLRLQRR 237 (285)
Q Consensus 215 ~~~~~~~~~s~d~--~i~vwd~~~~ 237 (285)
.++.+.+.|+.++ .+..||..+.
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcccc
Confidence 3556777887777 5555555443
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.047 Score=44.29 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=89.2
Q ss_pred CcEEEEeeC----------CCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246 16 PNYFAVGGS----------DEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 84 (285)
Q Consensus 16 ~~~l~tg~~----------dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i 84 (285)
..+|+.|+. .|.|.++++... ... ..+ ..... ....++|++++-- +.+|+.+.++.|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~------~~l---~~i~~-~~~~g~V~ai~~~--~~~lv~~~g~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN------FKL---KLIHS-TEVKGPVTAICSF--NGRLVVAVGNKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------EE---EEEEE-EEESS-EEEEEEE--TTEEEEEETTEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccc------eEE---EEEEE-EeecCcceEhhhh--CCEEEEeecCEE
Confidence 468887764 288999999874 100 000 11111 2346788888766 335777778999
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEEEec--
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVG-- 161 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~-- 161 (285)
.+|++... +.+.....+.....+.++.. .+++++.|..-..+.++..+. .+.+..+..
T Consensus 110 ~v~~l~~~----------------~~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~ 170 (321)
T PF03178_consen 110 YVYDLDNS----------------KTLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDY 170 (321)
T ss_dssp EEEEEETT----------------SSEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES
T ss_pred EEEEccCc----------------ccchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecC
Confidence 99999876 31222222222223666654 366899998888888775443 332333322
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
....++++.+-++++.++.+..+|.+.++...
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 23458888888676789999999999998765
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.17 E-value=0.0016 Score=35.78 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.0
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
...|..++|+|...++|.+..+|.|.++.++..+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3569999999999999999999999999986554
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.12 E-value=0.15 Score=44.05 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=107.2
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcce--EEEEEecCCCEEEEecCCcEEEEEcCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG 94 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~ 94 (285)
..++.++.++.|.-.|..+++............ .+...+ ..+....++..++...++.|+-+|..++
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~---------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG-- 130 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD---------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG-- 130 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc---------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence 466778888999999999998654433222100 000000 0111211244555556999999999887
Q ss_pred CCCCCCCCccccCCCCceEeecccCc---eee-eeEEEecCCCcEEEEec---------CCCeEEEEecCCCceEEEEec
Q 023246 95 PSPLSLSPEDLQKREEPQVYSGHRNS---QTV-KGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i-~~~~~~~~~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~ 161 (285)
+.+-.+...... ..+ ....+ . +..++.++ .+|.++.+|..+|+.+.....
T Consensus 131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 444443322110 001 11122 1 23344443 468899999999999877653
Q ss_pred cccc--------------------c-eEeEEcCCCCeEEEEecCC------------------cEEEEcCCCCCCC---C
Q 023246 162 DRHV--------------------V-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDFP---P 199 (285)
Q Consensus 162 h~~~--------------------v-~~~~~~p~~~~l~t~~~d~------------------~i~iwd~~~~~~~---~ 199 (285)
.... + ...++.+.+..++.++.++ .|.-.|+++++.. +
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 2110 1 1234455556666666554 6888888877631 1
Q ss_pred CCCC--------cccceeecc--ccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 200 LPDN--------AEKIMKANK--QGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 200 ~~~~--------~~~~~~~~~--~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
...+ ..+++.... .......++.++.+|.++.+|.++++.+-..
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 1111 111111100 0001125778889999999999998766444
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.09 E-value=0.11 Score=41.82 Aligned_cols=158 Identities=10% Similarity=-0.022 Sum_probs=87.2
Q ss_pred EEEEcCCCCcEEEEe----------eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246 8 AIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 77 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 77 (285)
.+..+|++ ..+++. -..-.|.+||..+......+..+..- +.. .......++++.+++++.
T Consensus 40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~-----R~~---~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP-----RAQ---VVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------B-----BS--GGGEEE-TTSSEEE
T ss_pred ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc-----hhe---ecccccceEEccCCcEEE
Confidence 46788986 555543 33567999999987644332222100 000 011223467889998776
Q ss_pred Ee--c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CC
Q 023246 78 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GG 153 (285)
Q Consensus 78 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~ 153 (285)
.. + -..|.|.|+... +.+..+.... +...| ....+-+.+-+.||.+.-..+. .|
T Consensus 111 V~N~TPa~SVtVVDl~~~----------------kvv~ei~~PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAAK----------------KVVGEIDTPG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp EEEESSSEEEEEEETTTT----------------EEEEEEEGTS-----EEEEE-EEETTEEEEEETTSCEEEEEETSTS
T ss_pred EEccCCCCeEEEEECCCC----------------ceeeeecCCC-----EEEEE-ecCCCceEEEecCCceEEEEECCCC
Confidence 64 3 678999999876 4555554332 12223 2223456677778999888877 56
Q ss_pred ceEEEEe----ccccc-ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 154 KLVRLMV----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 154 ~~~~~~~----~h~~~-v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+...+.. ....+ ...-++...+..++-.+.+|.|+--|+....
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 6543221 11122 2233444455556667788888888876654
No 363
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.09 E-value=0.037 Score=41.58 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=64.4
Q ss_pred EEEEEecCCCEEE-E-ecCCcEEEEE--cCCCCCCCCCCCCCccccCCCCceEeecccC--ceeeeeEEEecCCCcEEEE
Q 023246 65 TGLAYSNTSELLI-S-YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 65 ~~i~~s~~~~~l~-s-~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~ 138 (285)
+.++|+.+.+.+. . +.+-.|.-|| ..++. .+ +.+.+..++..+. ....-.+++ +.+|++.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~--~s---------nr~~i~dlrk~~~~e~~~PDGm~I-D~eG~L~Va 228 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD--LS---------NRKVIFDLRKSQPFESLEPDGMTI-DTEGNLYVA 228 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccc--cc---------CcceeEEeccCCCcCCCCCCcceE-ccCCcEEEE
Confidence 4688988776443 3 4588887788 44442 11 1112222221100 011234555 778999999
Q ss_pred ecCCCeEEEEecCCCceEEEEecccccceEeEEc
Q 023246 139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 172 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~ 172 (285)
.-..++|...|..+|+.+.+++-....|++++|-
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 9999999999999999999998888899999995
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.05 E-value=0.026 Score=47.58 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=72.0
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 84 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i 84 (285)
.-....|.+. +.+|+-...++|+|+.--+.+.... +. . ...+..|-. |.+|...+++.|
T Consensus 70 ~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~---------i~-----~--~~~~~~If~---G~LL~~~~~~~i 128 (443)
T PF04053_consen 70 SGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKS---------IK-----L--PFSVEKIFG---GNLLGVKSSDFI 128 (443)
T ss_dssp E-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT---------------------SS-EEEEE----SSSEEEEETTEE
T ss_pred ceeEEEEecC--ccEEEEECCCeEEEEEcCccccceE---------Ec-----C--CcccceEEc---CcEEEEECCCCE
Confidence 4456789884 4677777789999963222221000 00 1 112333322 888888777799
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-----------
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----------- 153 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~----------- 153 (285)
.+||..++ +.++.+.... |..+. |++++++++..+.+ .+++++....
T Consensus 129 ~~yDw~~~----------------~~i~~i~v~~----vk~V~-Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 129 CFYDWETG----------------KLIRRIDVSA----VKYVI-WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp EEE-TTT------------------EEEEESS-E-----EEEE-E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G
T ss_pred EEEEhhHc----------------ceeeEEecCC----CcEEE-EECCCCEEEEEeCC-eEEEEEecchhcccccccCch
Confidence 99999987 5666665332 77787 59999999988755 5666664422
Q ss_pred ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 189 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~i 189 (285)
..+..+..-...|.+.+|.-+ .|+-.... .++.
T Consensus 187 ~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 187 DAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp GGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred hceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 133333332467888899765 43333333 5655
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.039 Score=42.12 Aligned_cols=111 Identities=8% Similarity=-0.074 Sum_probs=78.5
Q ss_pred cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccce
Q 023246 130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM 208 (285)
Q Consensus 130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~ 208 (285)
.....+++.|+..+.+.--|..+|+....-.- ...+.+-+.- -|.+++.|+..|.+++.+.+++.. ..+. ....+.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~-~~~~vk 96 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV-ILETVK 96 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee-ehhhhc
Confidence 34467889999999999999999988754331 2233332222 467899999999999999988853 3332 333343
Q ss_pred eeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246 209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
.......+..++..++.|+..+..|.++...+.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 34345567779999999999999999887665543
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.18 Score=42.05 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=82.1
Q ss_pred ceEEEEEecCCCEE-EEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246 63 HITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 140 (285)
Q Consensus 63 ~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 140 (285)
....++.++.+..+ +.. .++.|.+.|.... +.......... ...+++ +++++.+..+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~----------------~~~~~~~vG~~---P~~~~~-~~~~~~vYV~n 134 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN----------------TVLGSIPVGLG---PVGLAV-DPDGKYVYVAN 134 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCccc----------------ceeeEeeeccC---CceEEE-CCCCCEEEEEe
Confidence 34577888888744 443 4799999997655 34444332222 567886 89987776655
Q ss_pred C---CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCC
Q 023246 141 D---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFP 198 (285)
Q Consensus 141 ~---dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~ 198 (285)
. ++.+.+.|..+.+.+.....-..+ ..++++|++..+..+ ..++.|.+.|.+...+.
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4 789999999999888876543334 889999999975544 47889999998766554
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.15 Score=40.93 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=112.6
Q ss_pred EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEc
Q 023246 10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK 89 (285)
Q Consensus 10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~ 89 (285)
.|.++...++.+--..+.|.-|+..+++. ..+ .+...+.++..-..+..|+++..+ +.+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----------~~~-------~~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~ 92 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----------RVF-------PSPGGFSSGALIDAGGRLIACEHG-VRLLDP 92 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----------EEE-------ECCCCcccceeecCCCeEEEEccc-cEEEec
Confidence 46676555677777778888888876642 111 122233444444444455554433 444554
Q ss_pred CCCCCCCCCCCCCccccCCCCceEee----cccCceeeeeEEEecCCCcEEEEecC-----------CCeEEEEecCCCc
Q 023246 90 NMGLGPSPLSLSPEDLQKREEPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKGGK 154 (285)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~ 154 (285)
..+ ..+..+. +... ...+.... .|+|.+.++... -|.|+.+|. .+.
T Consensus 93 ~~~----------------~~~t~~~~~~~~~~~-~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~ 153 (307)
T COG3386 93 DTG----------------GKITLLAEPEDGLPL-NRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG 153 (307)
T ss_pred cCC----------------ceeEEeccccCCCCc-CCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC
Confidence 433 1111111 1111 12556665 788887766443 234555554 466
Q ss_pred eEEEEecccccceEeEEcCCCCeEEEEec-CCcEEEEcCCC--CCCCC-----CCCCcccceeeccccCCCceEEEeCCC
Q 023246 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDFPP-----LPDNAEKIMKANKQGREDHSRITLTPD 226 (285)
Q Consensus 155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~d 226 (285)
.+..+..+-..-+.|+|||+++.|..+.. .+.|.-|++.. ..+.. ........-.-.....++.+.+++..+
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 66666666667789999999988766654 47787777653 11100 000000000000011123344344444
Q ss_pred C-eEEEEEecccccceeEeee-ccccccCCC-CCcCeEEEeecCC
Q 023246 227 V-IMHVLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFSD 268 (285)
Q Consensus 227 ~-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~ 268 (285)
| .|.+|+-. ++++..+... +........ .+-..+|+..-..
T Consensus 234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 3 88888877 5565555433 333333333 3344577765443
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.87 E-value=0.23 Score=41.95 Aligned_cols=195 Identities=12% Similarity=0.140 Sum_probs=95.2
Q ss_pred eEEEEcCCCCcEEEEe-eCCCc----EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 7 NAIVIDPRNPNYFAVG-GSDEY----ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg-~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
..++++|++ +++|.+ +..|. ++++|+.+++.+ ...+. ......+.|.++++.|+. ..
T Consensus 127 ~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------~d~i~--~~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 127 GGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL--------------PDGIE--NPKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE--------------EEEEE--EEESEEEEECTTSSEEEEEEC
T ss_pred eeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc--------------CCccc--ccccceEEEeCCCCEEEEEEe
Confidence 357899987 555544 55554 999999998632 11101 111224999999885444 32
Q ss_pred -----------CCcEEEEEcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEecC---C-Ce
Q 023246 81 -----------DELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-GH 144 (285)
Q Consensus 81 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d-g~ 144 (285)
...|+.|.+.+.. .. ...|...........+.. ++++++++.... + ..
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~---------------~~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQ---------------SEDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-G---------------GG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEE
T ss_pred CcccccccCCCCcEEEEEECCCCh---------------HhCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCCe
Confidence 2237788877651 11 234444333211445665 899998765322 3 56
Q ss_pred EEEEecCCC----ceEEEEecccccce-EeEEcCCCCeEEEEec---CCcEEEEcCCCCCC---C-CCCCCcccceeecc
Q 023246 145 LFIWKKKGG----KLVRLMVGDRHVVN-QLEPHPHIPMFATCGI---EKTVKLWAPMPTDF---P-PLPDNAEKIMKANK 212 (285)
Q Consensus 145 v~vwd~~~~----~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~---~-~~~~~~~~~~~~~~ 212 (285)
+++.++..+ .....+..+...+. .+... .+.+++.... .+.|...++..... . .+..+.....-...
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 888888764 23334433333443 33333 3434333322 24555556554432 1 22222221111111
Q ss_pred ccCCCceEEEeCCC--CeEEEEEec
Q 023246 213 QGREDHSRITLTPD--VIMHVLRLQ 235 (285)
Q Consensus 213 ~~~~~~~~~~~s~d--~~i~vwd~~ 235 (285)
....+.+++....+ ..|+++++.
T Consensus 333 ~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 333 SLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEECCEEEEEEEECCccEEEEEECC
Confidence 11233455555555 457777777
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0059 Score=55.12 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246 72 TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 150 (285)
Q Consensus 72 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 150 (285)
.+..++.+ +.|.+-..|..... .. ...+.....+|++++| +.+|..++.|-.+|.|.+||+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL---------------~~--~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL---------------GP--LHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc---------------ch--hhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEc
Confidence 33455555 57888888876531 11 1122222234999998 999999999999999999999
Q ss_pred CCCceEEEEecccccceEeE---EcCCCCeEEEEecCCcEEEEcC
Q 023246 151 KGGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 151 ~~~~~~~~~~~h~~~v~~~~---~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
..++.++.+..|..+.+.+- +..++..++++..-|. +|.+
T Consensus 160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999998887776665543 4445556777776665 5654
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.80 E-value=0.18 Score=39.82 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=87.7
Q ss_pred CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCC
Q 023246 16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP 95 (285)
Q Consensus 16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~ 95 (285)
++.|+.|+.+| +.+++..... ..... .+..+|..+...++-+.|+.-.|+.++++++..-...
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~--------------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS--------------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPV 69 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc--------------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchhhccc
Confidence 37888999988 8999983221 11111 1233499999999888888877899999999765211
Q ss_pred CCCCCCCccccCCCCceEeecccCceeeeeEE-EecCCCcEEEEecCCCeEEEEecCCC-----ceEEEEecccccceEe
Q 023246 96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQL 169 (285)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~~ 169 (285)
.... .............+.... .+..++ .....+...+.......|.+|..... +....+.- ...+..+
T Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~---~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 70 STSA-PLAFPKSRSLPTKLPETK---GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred cccc-cccccccccccccccccC---CeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 1000 000000000000111111 122222 11233444444444568888886542 34555553 3688999
Q ss_pred EEcCCCCeEEEEecCCcEEEEcCCCCCCC
Q 023246 170 EPHPHIPMFATCGIEKTVKLWAPMPTDFP 198 (285)
Q Consensus 170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~~ 198 (285)
+|. ++.++.+.. +...+.|+.++...
T Consensus 145 ~~~--~~~i~v~~~-~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 145 AFL--GNKICVGTS-KGFYLIDLNTGSPS 170 (275)
T ss_pred EEe--CCEEEEEeC-CceEEEecCCCCce
Confidence 998 456666664 45778888765543
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.19 Score=39.04 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=89.7
Q ss_pred eEEEEcCCCCcEEEEeeCCCcE-EEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-----
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYA-RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 80 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~----- 80 (285)
..|+|+|.-+.-++.+-.-|+. .++|....+....+. .....++ .+|. .|||+|.+|....
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~------s~~~RHf-yGHG------vfs~dG~~LYATEndfd~ 137 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV------SQEGRHF-YGHG------VFSPDGRLLYATENDFDP 137 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe------cccCcee-eccc------ccCCCCcEEEeecCCCCC
Confidence 3566777655556666555553 457776654321111 1111222 2333 6999999887652
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------------------
Q 023246 81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------------------ 141 (285)
Q Consensus 81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------------ 141 (285)
-|.|-|||...+. +.+..+..|.-. ...+.+ .+||+.++.+..
T Consensus 138 ~rGViGvYd~r~~f---------------qrvgE~~t~GiG--pHev~l-m~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 138 NRGVIGVYDAREGF---------------QRVGEFSTHGIG--PHEVTL-MADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred CCceEEEEeccccc---------------ceecccccCCcC--cceeEE-ecCCcEEEEeCCceecccccCccccchhhc
Confidence 3679999998653 456667777644 667774 899998887553
Q ss_pred CCeEEEEecCCCceEEE--Ee--cccccceEeEEcCCCCeEEEEecCC
Q 023246 142 CGHLFIWKKKGGKLVRL--MV--GDRHVVNQLEPHPHIPMFATCGIEK 185 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~~--~~--~h~~~v~~~~~~p~~~~l~t~~~d~ 185 (285)
.-.+.+.|..+|+++.+ +. .+.-.|..++..+++..++.|-..|
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 12355666666666533 22 3455788888888887766665443
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.67 E-value=0.37 Score=41.70 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred cCCCcEEEEecCCC------------------eEEEEecCCCceEEEEecccccc------eEeEEc----CCCC---eE
Q 023246 130 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVGDRHVV------NQLEPH----PHIP---MF 178 (285)
Q Consensus 130 ~~~~~~l~~~~~dg------------------~v~vwd~~~~~~~~~~~~h~~~v------~~~~~~----p~~~---~l 178 (285)
++.+..++.++.++ .|.-+|+.+|+.+...+.-.... ....+. -++. .+
T Consensus 225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V 304 (488)
T cd00216 225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI 304 (488)
T ss_pred eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence 44566677776554 79999999999988765211111 111111 1232 47
Q ss_pred EEEecCCcEEEEcCCCCCC
Q 023246 179 ATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 179 ~t~~~d~~i~iwd~~~~~~ 197 (285)
+.++.+|.+...|.+++++
T Consensus 305 ~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EEECCCceEEEEECCCCcE
Confidence 7788899999999988764
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.25 Score=39.62 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCCcceEEEEEecCCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246 58 GKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (285)
..|-..-+.|+|||+++.|..+ ..+.|+-|+....... .........+..... ..-.++. +.+|.+
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~---------~~~~~~~~~~~~~~G--~PDG~~v-DadG~l 226 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP---------IGGRRGFVDFDEEPG--LPDGMAV-DADGNL 226 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc---------cCCcceEEEccCCCC--CCCceEE-eCCCCE
Confidence 3344456789999999865554 3688888877531000 000001111111111 1445665 788888
Q ss_pred EEEecCCC-eEEEEecCCCceEEEEecccccceEeEEc-CCCCeE
Q 023246 136 VMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMF 178 (285)
Q Consensus 136 l~~~~~dg-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l 178 (285)
.+++...| .|.+|+.. ++++..+.-+...+++++|- |+.+.|
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 86555554 99999998 99998888776778888873 444543
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.34 Score=40.77 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.2
Q ss_pred cceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246 62 IHITGLAYSNTSELLISYNDELVYLFEKNMG 92 (285)
Q Consensus 62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~ 92 (285)
+.+.++.|+.+.++++...||.+++||+...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 6899999999888888899999999998643
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.61 E-value=0.25 Score=38.99 Aligned_cols=209 Identities=11% Similarity=0.039 Sum_probs=107.7
Q ss_pred ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCC-CCCcccccccccCCCCCcceEEEE---EecCCCEEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPRHLIGKNNIHITGLA---YSNTSELLIS 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~i~---~s~~~~~l~s 78 (285)
..+|..+..-|+- +.|++-+ |+.+.++++..-........ ..+-.. ..... ......+...+ -......|+.
T Consensus 35 ~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~f~~~~~~~~~~~L~v 110 (275)
T PF00780_consen 35 LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR-SLPTK-LPETKGVSFFAVNGGHEGSRRLCV 110 (275)
T ss_pred cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc-ccccc-ccccCCeeEEeeccccccceEEEE
Confidence 3458889988863 4544443 59999999986543211000 000000 00000 11223344444 1122346777
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCC-CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 157 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 157 (285)
+...+|.+|...... ... +..+.+... ..+..++| . ++.++.|.. ....+.|+.++....
T Consensus 111 a~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~-~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 111 AVKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTS-KGFYLIDLNTGSPSE 171 (275)
T ss_pred EECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeC-CceEEEecCCCCceE
Confidence 777799999887531 011 233334333 33788887 4 556666664 447788988776544
Q ss_pred EEecc------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC----CCCCCcccceeeccccCCCceEE
Q 023246 158 LMVGD------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP----PLPDNAEKIMKANKQGREDHSRI 221 (285)
Q Consensus 158 ~~~~h------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 221 (285)
.+... ..++..+.. +++.+|++ .|..-.+.+..+...+ .+.. .+.......+ +++
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~---~p~~~~~~~p---yli 242 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSS---APQSVAYSSP---YLI 242 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEcCC---chhEEEEECC---EEE
Confidence 33211 122333333 34455543 2444455555544322 1211 1122222222 777
Q ss_pred EeCCCCeEEEEEecccccceeEe
Q 023246 222 TLTPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 222 ~~s~d~~i~vwd~~~~~~~~~~~ 244 (285)
+..+++ |.||++.+++.++.+.
T Consensus 243 ~~~~~~-iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 243 AFSSNS-IEVRSLETGELVQTIP 264 (275)
T ss_pred EECCCE-EEEEECcCCcEEEEEE
Confidence 777755 9999999998877665
No 376
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.52 E-value=0.021 Score=47.03 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=57.7
Q ss_pred ecCCCEEEE----------ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 70 SNTSELLIS----------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 70 s~~~~~l~s----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
|||+++++. +..+.+.++|+.++ ....+...... +....| +|+|+.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-----------------~~~~l~~~~~~--~~~~~~-sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-----------------EITPLTPPPPK--LQDAKW-SPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-----------------EEEESS-EETT--BSEEEE--SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-----------------ceEECcCCccc--ccccee-ecCCCeeEEE
Confidence 567775554 22467899999876 23333322222 667775 9999999887
Q ss_pred cCCCeEEEEecCCCceEEEEecc------------------cccceEeEEcCCCCeEEEEecC
Q 023246 140 SDCGHLFIWKKKGGKLVRLMVGD------------------RHVVNQLEPHPHIPMFATCGIE 184 (285)
Q Consensus 140 ~~dg~v~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~p~~~~l~t~~~d 184 (285)
. ++.|+++++.+++..+ +... -+.-..+-|+|++++|+....|
T Consensus 61 ~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp E-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred e-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 6 5889999988774432 2211 1123568899999998877643
No 377
>PHA03098 kelch-like protein; Provisional
Probab=96.44 E-value=0.42 Score=41.87 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=34.2
Q ss_pred CCcEEEEecCC------CeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCCC
Q 023246 132 NDEYVMSGSDC------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT 195 (285)
Q Consensus 132 ~~~~l~~~~~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~ 195 (285)
+++..+.|+.+ ..+..||..+.+-.. .+....... +++ ..++..++.|+.+ ..+..||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56666777632 457888887654321 111111111 122 2245566666543 13888998876
Q ss_pred CCCC
Q 023246 196 DFPP 199 (285)
Q Consensus 196 ~~~~ 199 (285)
+...
T Consensus 467 ~W~~ 470 (534)
T PHA03098 467 KWTE 470 (534)
T ss_pred ceee
Confidence 6433
No 378
>PHA02713 hypothetical protein; Provisional
Probab=96.42 E-value=0.35 Score=42.51 Aligned_cols=136 Identities=9% Similarity=0.039 Sum_probs=63.6
Q ss_pred CCcEEEEecCCC-----eEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEecCC-------------------
Q 023246 132 NDEYVMSGSDCG-----HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK------------------- 185 (285)
Q Consensus 132 ~~~~l~~~~~dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~d~------------------- 185 (285)
+++..+.|+.++ .+..||..+.+-. ..+.........++. +++..+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 577777777654 4788998765322 222211111222222 566677776542
Q ss_pred ----cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC------CeEEEEEecccccceeEeeec-cccccCC
Q 023246 186 ----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYRERRY-NAADFES 254 (285)
Q Consensus 186 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~ 254 (285)
.+..||+.+...........+.........++.+.+.|+.+ ..+..||..+......+..-+ .......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 47778887765432221111111111112234455666543 245677766521222221111 1111112
Q ss_pred CCCcCeEEEeecCCC
Q 023246 255 DEEEGETYLLGFSDS 269 (285)
Q Consensus 255 ~~~~~~v~~~~~~~~ 269 (285)
..-++.||++|-.++
T Consensus 509 ~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 509 ILHDNTIMMLHCYES 523 (557)
T ss_pred EEECCEEEEEeeecc
Confidence 223567999975555
No 379
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.41 E-value=0.47 Score=39.79 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=93.3
Q ss_pred CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEEEecCCcEEEE
Q 023246 13 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYNDELVYLF 87 (285)
Q Consensus 13 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~s~~d~~i~iw 87 (285)
+++...+++|+..|.++||+........ - ...+...-..+|-.+..-+ +...||.-.-..+.||
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~-------~----~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY 102 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP-------E----DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVY 102 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC-------c----cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEE
Confidence 4456799999999999999985443110 0 0001112245666665432 2236777778889999
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE---ecCC-CcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 163 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 163 (285)
.+....+.... ...-.+..+..|.-......+++ -... ..++..-+.||.+.+|+-+.......+.. -
T Consensus 103 ~v~~~~g~~~~-------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 103 SVSLVDGTVEH-------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred EEEecCCCccc-------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 88433111000 00012222333332222333332 1222 35778889999999999875443344433 3
Q ss_pred ccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 164 HVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
--...+.++|....|++++.+..+.-|..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 33445788888888999998888888864
No 380
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.34 E-value=0.056 Score=44.53 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=46.0
Q ss_pred cCCCcEEEEec---------CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 130 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 130 ~~~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
||++++++... ..+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 45666665532 256789999998765543332 57889999999999988876 67899998866543
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.31 E-value=0.48 Score=41.86 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=59.3
Q ss_pred cceEEEEEecCCCEEEEec-------CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC
Q 023246 62 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 132 (285)
Q Consensus 62 ~~v~~i~~s~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 132 (285)
..+...+++|+|+.++... |. .|.+++.... ......+. ....-.| +|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----------------~~~lt~g~----~~t~PsW-spD 407 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----------------AVQVLEGH----SLTRPSW-SLD 407 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----------------ceeeecCC----CCCCceE-CCC
Confidence 3677899999998766522 43 3444454221 21112222 1556664 999
Q ss_pred CcEEEEecCC------------CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246 133 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 189 (285)
Q Consensus 133 ~~~l~~~~~d------------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~i 189 (285)
|+.+.+.... +.+.+.++..++... ...+.|..+.|+|||..++... ++.|.+
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 8877665432 233333443332222 2245799999999999977665 477776
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.30 E-value=0.54 Score=41.42 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=89.9
Q ss_pred EEEEcCCCCcEEEEeeCC------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246 8 AIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 80 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~ 80 (285)
++++.. | .+.++|+.| .++..||..+++.... .......+...+.. -+|.+.+. |.
T Consensus 327 ~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~-----------a~M~~~R~~~~v~~----l~g~iYavGG~ 389 (571)
T KOG4441|consen 327 GVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPV-----------APMNTKRSDFGVAV----LDGKLYAVGGF 389 (571)
T ss_pred cEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceecc-----------CCccCccccceeEE----ECCEEEEEecc
Confidence 344444 3 789999998 3566788877763211 01110111112222 24555555 44
Q ss_pred CC-----cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC------eEEEEe
Q 023246 81 DE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFIWK 149 (285)
Q Consensus 81 d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~v~vwd 149 (285)
|| ++-.||..+. .|..+..+...... ...+ .-++...++|+.++ .+..||
T Consensus 390 dg~~~l~svE~YDp~~~--------------~W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 390 DGEKSLNSVECYDPVTN--------------KWTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred ccccccccEEEecCCCC--------------cccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEEEc
Confidence 54 3777887665 22222222221111 2222 23677778887554 467888
Q ss_pred cCCCce--EEEEecccccceEeEEcCCCCeEEEEecCC-----cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE
Q 023246 150 KKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 222 (285)
Q Consensus 150 ~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (285)
..+.+- +..+..-..... ++. -++...+.||.|+ +|..||+.+.....+.....+.........++.+.+.
T Consensus 451 P~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV 528 (571)
T ss_pred CCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE
Confidence 776543 333332222222 222 2566777888776 3778998877654332222111111112234456677
Q ss_pred eCCCC
Q 023246 223 LTPDV 227 (285)
Q Consensus 223 ~s~d~ 227 (285)
|..|+
T Consensus 529 GG~~~ 533 (571)
T KOG4441|consen 529 GGFDG 533 (571)
T ss_pred ecccC
Confidence 77663
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.25 E-value=0.2 Score=40.00 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=76.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 83 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~ 83 (285)
+.+..+.-++++ .+++++..-....-|+.-.... .+.. .....+|..+.|.|++.+.+.+..+.
T Consensus 145 gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 145 GSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp --EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTTE
T ss_pred ceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCcE
Confidence 457778888875 7888776655556677542211 1111 22457899999999998877778888
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec--
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-- 161 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-- 161 (285)
|+.=+..... ..+.. ...........+..++| .++++..++|+. |.+ +.....|+.=.....
T Consensus 209 ~~~s~~~~~~------------~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 209 IQFSDDPDDG------------ETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp EEEEE-TTEE------------EEE----B-TTSS--S-EEEEEE-SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT
T ss_pred EEEccCCCCc------------ccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeCC-ccE-EEeCCCCccceECcccc
Confidence 8877621110 00000 00111112223788997 777777776664 444 334555655443332
Q ss_pred -ccccceEeEEcCCCCeEEEEecCCcEEEE
Q 023246 162 -DRHVVNQLEPHPHIPMFATCGIEKTVKLW 190 (285)
Q Consensus 162 -h~~~v~~~~~~p~~~~l~t~~~d~~i~iw 190 (285)
-...++.+.|.+..+-++.| .+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 23457788887665556554 57776544
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.20 E-value=0.35 Score=41.56 Aligned_cols=124 Identities=8% Similarity=0.043 Sum_probs=72.9
Q ss_pred CCcceEEEEEecCC-----CEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCcee--eeeEEEecC
Q 023246 60 NNIHITGLAYSNTS-----ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQT--VKGVNFFGP 131 (285)
Q Consensus 60 h~~~v~~i~~s~~~-----~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--i~~~~~~~~ 131 (285)
.-..|..+.|.|-+ .+||.-..+.|.||.+.... .+-. +.+..-.. ...+-+ -.++. |+|
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~---------~e~~--K~l~sQtcEi~e~~pvLpQGCV-WHP 122 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST---------TERN--KLLMSQTCEIREPFPVLPQGCV-WHP 122 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc---------cccc--cceeeeeeeccCCcccCCCccc-ccC
Confidence 34578999999964 37777889999999996331 0000 11111111 111011 12344 689
Q ss_pred CCcEEEEecCCCeEEEEecCC--CceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC
Q 023246 132 NDEYVMSGSDCGHLFIWKKKG--GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD 196 (285)
Q Consensus 132 ~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~ 196 (285)
....++.-.....-.+++++. ......++ ..+.|.|.+|.+||+.|+.+- ..=.-++||-....
T Consensus 123 k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 123 KKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred CCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 888876655444444555442 33334454 467899999999999966553 33356789865543
No 385
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.16 E-value=0.025 Score=30.13 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.9
Q ss_pred cceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCC
Q 023246 4 IRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKC 36 (285)
Q Consensus 4 ~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~ 36 (285)
+.|.++.|+|.+. .+|+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998665 69999989999999999853
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.00 E-value=0.49 Score=39.26 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred eeeEEEecCCCcEEEEecC-------------------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec
Q 023246 123 VKGVNFFGPNDEYVMSGSD-------------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 183 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~-------------------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~ 183 (285)
...+.+ .|+|.+.++-+. .|.|.-++...++......++ .....++|+|+++++++-..
T Consensus 126 ~~~l~~-gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 126 LNSLAW-GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCceE-CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 677886 899887665441 145666666644432222232 34578999999988776553
Q ss_pred C
Q 023246 184 E 184 (285)
Q Consensus 184 d 184 (285)
+
T Consensus 204 ~ 204 (367)
T TIGR02604 204 D 204 (367)
T ss_pred C
Confidence 3
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.59 Score=36.65 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=97.7
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~ 83 (285)
.|.++.|+|+. +.|++......-.|+=-..|+++..+. ... -.....|.+..++++.++-. +..
T Consensus 87 nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiP---------L~g-----~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 87 NVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIP---------LTG-----FSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEec---------ccc-----cCChhHeEEecCCEEEEEehhcce
Confidence 48899999986 666666666666666666676543321 111 12344678888888888875 899
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEee--cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce---EEE
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRL 158 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~ 158 (285)
+.++.+........ .. ...-.+. .+. ......++| ++..+.+..+-+..-+.+|....+.. ++.
T Consensus 152 l~~~~vd~~t~~~~-------~~--~~~i~L~~~~k~-N~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 152 LYLFTVDADTTVIS-------AK--VQKIPLGTTNKK-NKGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred EEEEEEcCCccEEe-------cc--ceEEeccccCCC-CcCceeeec-CCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence 99988875521000 00 0001111 111 134788996 99888888888777777776653321 111
Q ss_pred Eecc-------cccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC
Q 023246 159 MVGD-------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 159 ~~~h-------~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
...+ -..|.++.|++. +..++-+.+++.+.-.|..+..
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 1111 134677788764 4456666677777777766553
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.78 E-value=0.025 Score=42.23 Aligned_cols=66 Identities=8% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCcEEEEecCCCeEEEEecCC-CceEEEEecccccce-EeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 132 NDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 132 ~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
-+..+++|+.+|.|++|.... ++.......-...|. .+.--.++.+..+++.|+.|+.|+....+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence 456788999999999998762 221111111112222 222233455788899999999999877664
No 389
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.73 E-value=0.099 Score=39.74 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=52.0
Q ss_pred EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcC
Q 023246 11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 90 (285)
Q Consensus 11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~ 90 (285)
+...+ .+|++-+.+|.+++||+.+++....-..-.|+-.... .........|..+.++.+|.-+++-++|..+.|+..
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 33443 6788899999999999998875432211111100000 000145678999999999988888777889999976
Q ss_pred CC
Q 023246 91 MG 92 (285)
Q Consensus 91 ~~ 92 (285)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 54
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.76 Score=36.08 Aligned_cols=118 Identities=8% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 59 KNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 59 ~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
+-...+.++.|+|+.+.|++ .+...-.|+=...+ +.++++.-..- .....+.| -.++++++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fvi 144 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFVI 144 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEEE
Confidence 33445999999999987766 45444444444444 45555542211 11455776 67788888
Q ss_pred EecCCCeEEEEecCCCceEEE-------Ee--cc-cccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 138 SGSDCGHLFIWKKKGGKLVRL-------MV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 138 ~~~~dg~v~vwd~~~~~~~~~-------~~--~h-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
+--.++.++++.+.....+.. +. .+ +.....++|+|..+.|..+-+-.=++||....
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 888899999988765432211 11 12 45678899999999988888777777776643
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=1.1 Score=37.42 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=72.3
Q ss_pred CCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 58 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
....++|.+|.||+|.+.+|.- .+.+|.+++..... ......++.+... ..|.+..| ..+ .-+
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~------------~~l~~~~~ck~k~--~~IlGF~W-~~s-~e~ 126 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN------------SQLEYTQECKTKN--ANILGFCW-TSS-TEI 126 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc------------hhhHHHHHhccCc--ceeEEEEE-ecC-eeE
Confidence 3446699999999999999994 69999999985431 0001111112222 23888875 555 444
Q ss_pred EEecCCCeEEEEecC-CCceEEEEecccccceEeEEcCCCCeEEEE-e-cCCcEEEEcCCCC
Q 023246 137 MSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATC-G-IEKTVKLWAPMPT 195 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~-~d~~i~iwd~~~~ 195 (285)
+..+..| +-+|-.. ....++..+.|.-.|+-..|+|+-+.++-+ + ..+++.=+.++++
T Consensus 127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4444333 4444432 244566667788889999999988873333 3 3344444444443
No 392
>PHA02790 Kelch-like protein; Provisional
Probab=95.33 E-value=1.7 Score=37.60 Aligned_cols=61 Identities=7% Similarity=-0.051 Sum_probs=31.9
Q ss_pred CCcEEEEecCCC---eEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246 132 NDEYVMSGSDCG---HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 132 ~~~~l~~~~~dg---~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 197 (285)
+++..+.|+.++ .+..||.++.+-.. .+.........++ -+++..+.|+ .+.+||+++...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE
Confidence 577777777543 46678876543222 1111111112222 2455555553 577899877654
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.20 E-value=0.57 Score=39.20 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC----
Q 023246 58 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---- 132 (285)
Q Consensus 58 ~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 132 (285)
......+.+|+.+|.+++.|+.. =|.|.++|+..+ ..++.+++.++... .-+......
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAqc-~wi~~~~~~~~~~ 366 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQC-GWIEVPEEGDRDR 366 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccceE-EEEEeeccccccc
Confidence 34456788999999998888864 699999999988 56666776665321 111100111
Q ss_pred ------------CcE-EEEecCCCeEEEEecCCCceEEEEec
Q 023246 133 ------------DEY-VMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 133 ------------~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
..+ ++-+-.-|.|-||.+++|..+..+..
T Consensus 367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 112 33466789999999999988877764
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.19 E-value=0.4 Score=36.27 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=64.9
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEE--ccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCc
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL 83 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~ 83 (285)
++++|+.+...+.++-+.+-+|.-|| ..+|...+.... . .++..........-.++...+|.+.++ -+.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i----~--dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI----F--DLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCccee----E--EeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 46888876545556667778887787 667764432110 0 000000000011123444567776555 47899
Q ss_pred EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246 84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 138 (285)
|...|..++ +.+..+.-.... +++++|-.++-..+++
T Consensus 235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence 999999998 788888877755 9999985454444443
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.14 E-value=1.3 Score=39.14 Aligned_cols=110 Identities=7% Similarity=0.173 Sum_probs=69.3
Q ss_pred eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe-cCCCcEEEEecC
Q 023246 64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSD 141 (285)
Q Consensus 64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~ 141 (285)
.+-+.-+.-++..+.. +...+.|||...+. .+.-..| ... ..|.++.|. .|+++.+++.+.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--------------lE~~~~f-~~~--~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV--------------LEYEESF-SED--DPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcE--------------EEEeeee-cCC--CceeeceeeecCCCCEEEEEEc
Confidence 3344444444544443 46789999998761 0111222 122 338999863 478999999999
Q ss_pred CCeEEEEecC---------CCceEEEE--eccc-ccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 142 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 142 dg~v~vwd~~---------~~~~~~~~--~~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
.+.|.+|.-. ...++..+ ..|+ .+|.+..|.++|..++.++ ..+.+++-
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 9999998631 11233333 2344 6799999999998766554 57888875
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.2 Score=34.82 Aligned_cols=101 Identities=11% Similarity=0.168 Sum_probs=66.8
Q ss_pred EEEEEecCCCE-EEEe-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246 65 TGLAYSNTSEL-LISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 141 (285)
Q Consensus 65 ~~i~~s~~~~~-l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 141 (285)
..++|+|.... ++-+ . .....++|.+.. +.+.++...++....-.=.| +++|.+|+..-.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATEn 133 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATEN 133 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeecC
Confidence 35777776643 3334 3 344678888776 44444443333222222234 999999987543
Q ss_pred -----CCeEEEEecCCC-ceEEEEecccccceEeEEcCCCCeEEEEe
Q 023246 142 -----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 142 -----dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~ 182 (285)
-|.|=+||.+.+ +.+.++..|.-....+.|.+||+.++.+.
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 478999998743 45677888887888899999999987765
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.14 Score=43.21 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=50.2
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM 91 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~ 91 (285)
-++|+|+.+|.||+||- .+. ..++.+.+-..+|..|..+.+|+++++..+..+.+.++.-
T Consensus 442 G~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ceEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 48999999999999997 444 4445557778899999999999999988888888888754
No 398
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.98 E-value=1.6 Score=35.37 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=87.4
Q ss_pred CCCCcEEEEeeCCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEecCCcEEEEEcC
Q 023246 13 PRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKN 90 (285)
Q Consensus 13 ~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~d~~i~iwd~~ 90 (285)
|.++.-|.+-|.||++.-..+. .|+.... ....+...+...+..-+++..+ .++..+-+|.|+--|+.
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~----------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQK----------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEE----------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEe----------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 4344678888999999999887 3442100 0011111112122233445443 46666778888888886
Q ss_pred CCCCCCCCCCCCccccCCCCceEeecc------cCc--eeeeeEEEecCCCcEEEEecC--C-------CeEEEEecCCC
Q 023246 91 MGLGPSPLSLSPEDLQKREEPQVYSGH------RNS--QTVKGVNFFGPNDEYVMSGSD--C-------GHLFIWKKKGG 153 (285)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~i~~~~~~~~~~~~l~~~~~--d-------g~v~vwd~~~~ 153 (285)
.... +....+... ... ....-++++.+.+++.+.... + ..|.++|+.++
T Consensus 214 g~~~--------------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 214 GDSA--------------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp TSSE--------------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred CCcc--------------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence 5410 011111100 000 013345653334444433211 1 25888899999
Q ss_pred ceEEEEecccccceEeEEcCCCC-eEEEE-ecCCcEEEEcCCCCCC
Q 023246 154 KLVRLMVGDRHVVNQLEPHPHIP-MFATC-GIEKTVKLWAPMPTDF 197 (285)
Q Consensus 154 ~~~~~~~~h~~~v~~~~~~p~~~-~l~t~-~~d~~i~iwd~~~~~~ 197 (285)
+.+..+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..++++
T Consensus 280 krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 280 KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 99998874 34688999998766 45544 4578999999988874
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.87 E-value=1.9 Score=39.60 Aligned_cols=151 Identities=9% Similarity=0.071 Sum_probs=91.2
Q ss_pred ceEEEEEecC-CCEEEEec-----------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246 63 HITGLAYSNT-SELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 130 (285)
Q Consensus 63 ~v~~i~~s~~-~~~l~s~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 130 (285)
.+.++.|..| +.+++.|. .|.|.+|..... +.++....+.-...+.++.-
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------------~~L~~v~e~~v~Gav~aL~~-- 837 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------------NSLELVAETVVKGAVYALVE-- 837 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------------Cceeeeeeeeeccceeehhh--
Confidence 4556668777 45665542 256778877653 34444433332223555542
Q ss_pred CCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCC--Cccc
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD--NAEK 206 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~--~~~~ 206 (285)
-+|+++|.- ...|++|++.+.+.++.-..|..++..+...-.+..++.|..-+.+.+...+..+ +..+.. +..+
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W 915 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW 915 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence 467777644 4789999998887777777788899999988889999999888877776554333 322211 2222
Q ss_pred ceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246 207 IMKANKQGREDHSRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~~ 235 (285)
.... ...+.+.++-+..+|.+++....
T Consensus 916 mtav--eil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAV--EILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeE--EEecCceEEeecccccEEEEEec
Confidence 2221 11233445555666777776544
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.86 E-value=1.3 Score=35.48 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred CcceEEEEEecCCCEEEEecCCcEE-EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246 61 NIHITGLAYSNTSELLISYNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 139 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 139 (285)
.+.+..+..+++|++++.+..|.+. -|+.... ....+... ....|..+.| .+++.+.+.+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-----------------~w~~~~r~-~~~riq~~gf-~~~~~lw~~~ 204 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-----------------TWQPHNRN-SSRRIQSMGF-SPDGNLWMLA 204 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-----------------S-EEEE---SSS-EEEEEE--TTS-EEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc-----------------cceEEccC-ccceehhcee-cCCCCEEEEe
Confidence 4568888889999999998866654 6665422 22222221 2244999998 8998776655
Q ss_pred cCCCeEEEEecCCCceEEEEec-------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 140 SDCGHLFIWKKKGGKLVRLMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 140 ~~dg~v~vwd~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
..|.|++=+.. .....+.. ..-.+..++|.+++...++|+ .|.+ +.....++
T Consensus 205 -~Gg~~~~s~~~--~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 205 -RGGQIQFSDDP--DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp -TTTEEEEEE-T--TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred -CCcEEEEccCC--CCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 78888887721 12222221 223478899999887777666 4544 33444444
No 401
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.72 E-value=0.0042 Score=51.38 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=96.0
Q ss_pred EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCCcEEE
Q 023246 9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYL 86 (285)
Q Consensus 9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~~i~i 86 (285)
..|-|.+.+ ++.++.+..|..||-...... ....++..-.++|..++..++. + ..+.+.+
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq~~l-----------------e~n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQVIL-----------------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhcceec-----------------ccCCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 567787644 777777888888886533211 0122445567888888876555 4 4899999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 166 (285)
||+.+. ..+.+...... -.++.-|++....++.+...|.+.+++..+...+..+-.|...+
T Consensus 102 wd~n~e-----------------ytqqLE~gg~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRg 162 (615)
T KOG2247|consen 102 WDVNSE-----------------YTQQLESGGTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRG 162 (615)
T ss_pred chhhhh-----------------hHHHHhccCcc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccce
Confidence 999875 33333322211 22222258888899999999999999998777766666688999
Q ss_pred eEeEEcCCCCeEEEEecCCcEEE
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKL 189 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~i 189 (285)
.+++|.+.+. .+.++.|..+.+
T Consensus 163 tq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 163 TQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred eEEEecccce-eeecCcHHHHHH
Confidence 9999998764 455555654443
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.53 E-value=0.041 Score=49.19 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=66.7
Q ss_pred cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeE-----------EcCCCCeEEEEecCCcEEEEcCC--C--
Q 023246 130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE-----------PHPHIPMFATCGIEKTVKLWAPM--P-- 194 (285)
Q Consensus 130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~-----------~~p~~~~l~t~~~d~~i~iwd~~--~-- 194 (285)
-++.-++..+-.++.+++........ ..+.+|...+..++ .+|||..|++++.||.+++|.+- +
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 34566777788888888877654332 33345665554443 68999999999999999999862 2
Q ss_pred --CCCCCCCCCcc-cceeeccccCC--------CceEEEeCC-CCeEEEEEecccccc
Q 023246 195 --TDFPPLPDNAE-KIMKANKQGRE--------DHSRITLTP-DVIMHVLRLQRRQTL 240 (285)
Q Consensus 195 --~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~s~-d~~i~vwd~~~~~~~ 240 (285)
.+++.++.|.+ +.++..+.... -.++++++. +..+++|.....+.+
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 12455665652 22222211110 123444443 477899987665554
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.51 E-value=0.33 Score=36.92 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=50.8
Q ss_pred cCCCcEEEEecCCCeEEEEecCCCceEEEE-------e-------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-------~-------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
..++.++++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 446888999999999999999987764322 1 2446788888998888777766 578899987765
Q ss_pred CC
Q 023246 196 DF 197 (285)
Q Consensus 196 ~~ 197 (285)
..
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 53
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.48 E-value=0.15 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=25.4
Q ss_pred ccceEeEEcCCCC---eEEEEecCCcEEEEcCCC
Q 023246 164 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 164 ~~v~~~~~~p~~~---~l~t~~~d~~i~iwd~~~ 194 (285)
+.|.++.|+|... +|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998554 677777889999999985
No 405
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=3 Score=39.65 Aligned_cols=148 Identities=10% Similarity=0.103 Sum_probs=84.5
Q ss_pred EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE--------ecCCC-EEEEecCCcEEEEEcCC
Q 023246 21 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY--------SNTSE-LLISYNDELVYLFEKNM 91 (285)
Q Consensus 21 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~--------s~~~~-~l~s~~d~~i~iwd~~~ 91 (285)
--+.|+.+.+|++.++.....+ .+-...|..+.. .|.=+ +|+.+.--.|.++-+.-
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~---------------d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEY---------------DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccc---------------cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 3466899999999985422111 222333433332 22222 45556666777776654
Q ss_pred CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEE--EEecCCC---c-e----------
Q 023246 92 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF--IWKKKGG---K-L---------- 155 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~--vwd~~~~---~-~---------- 155 (285)
...+....+ ....+.-..++..|.++.+ ..+|+.+++|-++ .|+ +|....+ + +
T Consensus 159 ~~~~~~~~~---------f~~~~~i~~dg~~V~~I~~-t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 159 DEFTGELSI---------FNTSFKISVDGVSVNCITY-TENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred ccccCcccc---------cccceeeecCCceEEEEEe-ccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHH
Confidence 321111110 1111232344455889986 7888888776654 443 2222211 1 0
Q ss_pred ------EEEEe-cccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 156 ------VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 156 ------~~~~~-~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
+..+. .+..+|..+++......+.+-+..++|.+|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11223 4567999999988888899999999999999854
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=94.20 E-value=2.6 Score=34.49 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=81.1
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEE-EEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARV-YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 82 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~ 82 (285)
+.+.++.+.|++ .++++|. .|.+.. ++- .++. +... ...-...++++.+.++++.++.+..|
T Consensus 173 g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~~-gg~t------------W~~~--~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 173 GVVRNLRRSPDG-KYVAVSS-RGNFYSTWEP-GQTA------------WTPH--QRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred ceEEEEEECCCC-eEEEEeC-CceEEEEcCC-CCCe------------EEEe--eCCCcccceeeeEcCCCCEEEEecCC
Confidence 457788888864 5555544 454432 121 1110 0111 12234578899999999988888888
Q ss_pred cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246 83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG- 161 (285)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~- 161 (285)
.+.+=....+. .++.+. .........+.++.+ .++++.++++ .+|.+.. ....++.-.....
T Consensus 236 ~~~~~s~d~G~-------------sW~~~~-~~~~~~~~~l~~v~~-~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~ 298 (334)
T PRK13684 236 QIRFNDPDDLE-------------SWSKPI-IPEITNGYGYLDLAY-RTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVG 298 (334)
T ss_pred EEEEccCCCCC-------------cccccc-CCccccccceeeEEE-cCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcC
Confidence 76532233330 111111 110001123777886 7777655544 5676653 3444443333321
Q ss_pred --ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 162 --DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 162 --h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
-....+.+.|..+++.++ .+..|.|--|+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 299 EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 123466777776666655 445788877764
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.16 E-value=2.2 Score=33.38 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=88.5
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 83 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~ 83 (285)
.+.+.++++++..+.+....++.-.||-...+. ....... ...+....|++++...+.. .+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence 577899999874444444344444555544333 1111111 2367788999998766664 3555
Q ss_pred EEEEE-cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEecC---CC---
Q 023246 84 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG--- 153 (285)
Q Consensus 84 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~~---~~--- 153 (285)
.+++. ...+. .....+........|..+.+ +|+|..++... .++.|.+--+. .+
T Consensus 89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 55553 22220 11111111111014999997 99999887654 45777776533 23
Q ss_pred ---ceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEE-EcCCCCCC
Q 023246 154 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTDF 197 (285)
Q Consensus 154 ---~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~i-wd~~~~~~ 197 (285)
..+.........+..++|.+++.+++.+. .+..+.. ........
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcc
Confidence 11222223346889999999998855554 3443444 44444443
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=0.59 Score=43.40 Aligned_cols=153 Identities=8% Similarity=0.017 Sum_probs=89.3
Q ss_pred ccceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246 3 SIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 78 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s 78 (285)
..+|..+...+|. ...++.. .+-.|..||+++-....... ..++ +...+......-..++.|.|.=. .++.
T Consensus 100 ~~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl---~~s~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPL---KNSATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred cccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh-cccc---ccccchhccccccccccccCCccchhhhh
Confidence 3456667777764 4433332 33367889988654322111 1111 11112122234456788888643 4444
Q ss_pred ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
..|+.|++..+.... .....+.- . ...++++| +|.|+.++.|-..|++.-|... ++....
T Consensus 175 l~dlsl~V~~~~~~~---------------~~v~s~p~-t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLA---------------QNVTSFPV-T--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccchhhhhhhhhh---------------hhhcccCc-c--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeec
Confidence 569999888775431 12222222 2 22788885 9999999999999999988654 444443
Q ss_pred Eec----ccccceEeEEcCCCCeEEE
Q 023246 159 MVG----DRHVVNQLEPHPHIPMFAT 180 (285)
Q Consensus 159 ~~~----h~~~v~~~~~~p~~~~l~t 180 (285)
+.. ....|.+|.|--...+++.
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 332 1367999999877666543
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.03 E-value=3.9 Score=35.86 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=30.4
Q ss_pred ceEEEeCCCCeEEEEEecccccceeEeeeccccc-cCCCCCcCeEEEee
Q 023246 218 HSRITLTPDVIMHVLRLQRRQTLAYRERRYNAAD-FESDEEEGETYLLG 265 (285)
Q Consensus 218 ~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 265 (285)
.+++.++.+|.++.+|.++++.+-.......... ......+|++|++.
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~ 521 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAV 521 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEE
Confidence 4667788899999999999988765543221111 11112456788764
No 410
>PHA03098 kelch-like protein; Provisional
Probab=94.00 E-value=2.9 Score=36.70 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCcEEEEecCC-----CeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCCCCC
Q 023246 132 NDEYVMSGSDC-----GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTDF 197 (285)
Q Consensus 132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~~~ 197 (285)
+++..+.|+.+ ..+..||..+.+-.. .+....... +++. -+++..+.||.+ ..+..||+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56677777764 347778876554221 111111111 1222 245666666632 3578899876654
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.87 E-value=2.5 Score=33.00 Aligned_cols=151 Identities=10% Similarity=0.109 Sum_probs=81.6
Q ss_pred EEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246 8 AIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY 85 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~ 85 (285)
.+.|..++ .++-+.+.-| .|+.+|+.+++.......+. ..--..++...+.-+..+=.++...
T Consensus 49 GL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 49 GLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEETTEEEEEESSSSEEE
T ss_pred cEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEECCEEEEEEecCCeEE
Confidence 46664544 6666666655 68889999987432211111 1112234444332233334689999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc--
Q 023246 86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-- 163 (285)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-- 163 (285)
+||..+. +.+.++.-... =..++. +++.|+.......++++|..+.+....+....
T Consensus 114 ~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 114 VYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp EEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred EEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence 9999876 56666654332 456653 56667766768899999988877766664321
Q ss_pred ---ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 164 ---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 164 ---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
..++-+.|- +|...|-.=....|...|+.++.
T Consensus 172 ~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 172 RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 234455554 44444444344455555665554
No 412
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.43 E-value=2.1 Score=36.55 Aligned_cols=142 Identities=10% Similarity=0.109 Sum_probs=82.4
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--------CEEEEecCCcEEEEE
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFE 88 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--------~~l~s~~d~~i~iwd 88 (285)
-++..|.....+.-.|+..|+.+..|... .. | -+.|.|.. +.|+.-++..|.-.|
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~---------------dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrID 543 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLK---------------DD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRID 543 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecC---------------Cc-c-eeecCCchhHHhcCccceEEeecccceEEec
Confidence 34555666677777888888755444322 21 2 44555532 345555666665556
Q ss_pred cCCCCCCCCCCCCCccccCCCCce--EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246 89 KNMGLGPSPLSLSPEDLQKREEPQ--VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166 (285)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 166 (285)
.+... ..+. .++.........+.. .....+++.++..|-|++||.-.......+.+-...|
T Consensus 544 PR~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI 606 (776)
T COG5167 544 PRARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI 606 (776)
T ss_pred ccccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeehhhcchhhhcCcccccce
Confidence 54330 1111 111111111133332 3456799999999999999965433444455666788
Q ss_pred eEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
..+....+|++++..|. ..+.+-|+.
T Consensus 607 k~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 607 KHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeeEeecCCcEEEEeec-ceEEEEecc
Confidence 89999999999555553 456666653
No 413
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.41 E-value=3.3 Score=32.97 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcce-EEEEEecC--CCEEEEe--cCCcEEEEEcCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSNT--SELLISY--NDELVYLFEKNM 91 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~i~~s~~--~~~l~s~--~d~~i~iwd~~~ 91 (285)
..++.++.||+|.-|...-+.... .. ....+-......| ..+++... +.+|... ..++|.|||-.-
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~-------~~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRM-------TR--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccc-------cc--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 346778899999999864332100 00 0000001112233 34555543 4566655 389999998764
Q ss_pred CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec--ccccceEe
Q 023246 92 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQL 169 (285)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~~ 169 (285)
..-..+..+....++-.--..-+..-.....|+-..- +++.+.=+.|..-|.|-+||+. |+.++.+.. .-.....|
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCcee
Confidence 4211111111111111000000111111111222221 4444445556667899999997 888888742 23455667
Q ss_pred EEcC------CCCeEEEEecCCcEEEEcCCCCC
Q 023246 170 EPHP------HIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 170 ~~~p------~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+..| .+.+|+--=.||+|..+|+.++.
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 7755 34555555579999999998665
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.29 E-value=3.1 Score=36.97 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=62.0
Q ss_pred EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCC-EEEEecCCcEEEEEcCCCCCCCC
Q 023246 21 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSE-LLISYNDELVYLFEKNMGLGPSP 97 (285)
Q Consensus 21 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~-~l~s~~d~~i~iwd~~~~~~~~~ 97 (285)
+-+....+.|||...+.+.. ... ....+.|.++.|.. +++ .|+.|-...|.++......-.
T Consensus 46 V~~~~~~LtIWD~~~~~lE~-------------~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~-- 109 (631)
T PF12234_consen 46 VDSSRSELTIWDTRSGVLEY-------------EES-FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT-- 109 (631)
T ss_pred EECCCCEEEEEEcCCcEEEE-------------eee-ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh--
Confidence 33344578999998776321 111 14467899999864 666 455588999999976432100
Q ss_pred CCCCCccccCCCCceEe--ecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246 98 LSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 150 (285)
Q Consensus 98 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 150 (285)
...+.+..++.+ ..++. .+|.+..| -++|.+++.++ +.+.|+|-
T Consensus 110 -----~~~p~w~~i~~i~i~~~T~-h~Igds~W-l~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 -----NKGPSWAPIRKIDISSHTP-HPIGDSIW-LKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred -----cCCcccceeEEEEeecCCC-CCccceeE-ecCCeEEEEeC--CEEEEECC
Confidence 111222333333 22331 23888885 88887776554 67888874
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.18 E-value=6.6 Score=35.81 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred eeeEEEecCCCcEEEEecCCCeEEEEecCC----------Cce---EEEEe--------cccccceEeEEcCC---CCeE
Q 023246 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----------GKL---VRLMV--------GDRHVVNQLEPHPH---IPMF 178 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------~~~---~~~~~--------~h~~~v~~~~~~p~---~~~l 178 (285)
|..+.. +++|.+++..+..|.+. ..+.. |+. .+++. .+...|..+.|+|. +.+|
T Consensus 87 v~~i~~-n~~g~~lal~G~~~v~V-~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 87 VHQISL-NPTGSLLALVGPRGVVV-LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred EEEEEE-CCCCCEEEEEcCCcEEE-EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 888887 99999998888766443 33321 111 11221 23457889999996 4678
Q ss_pred EEEecCCcEEEEcCC
Q 023246 179 ATCGIEKTVKLWAPM 193 (285)
Q Consensus 179 ~t~~~d~~i~iwd~~ 193 (285)
+.-..|+++|+||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 888889999999985
No 416
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.10 E-value=4 Score=37.65 Aligned_cols=126 Identities=12% Similarity=0.140 Sum_probs=74.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--CCcCCCCCccccccccc-C-CCCCcceEEEEEecCCCEEEEe
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPISSDTPVDTFCPRHL-I-GKNNIHITGLAYSNTSELLISY 79 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~h~~~v~~i~~s~~~~~l~s~ 79 (285)
.+...++|+|.....||.....|...||++...... ..+.... ... ..+ . ......-..|.|.++.+.|+.+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~---~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~ 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR---NIS-GSIIFDPEELSNWKRILWVSDSNRLLVC 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc---CCC-ccccCCCcccCcceeeEecCCCCEEEEE
Confidence 456689999987789999999999999999322111 0110000 000 000 0 1112445688999988888888
Q ss_pred cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCC
Q 023246 80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG 152 (285)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~ 152 (285)
+...+.++|+.+. .....+........|..+.- ++. +..|+-.+ ..|...++..
T Consensus 222 ~r~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEec--CeEEEEEccC
Confidence 8889999999876 22111222222234777775 554 22333222 5677777665
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.87 E-value=0.16 Score=45.78 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=78.2
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEE-----------EecCCCEEEE-ecCCcE
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YSNTSELLIS-YNDELV 84 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~-----------~s~~~~~l~s-~~d~~i 84 (285)
-++..+-.++++++.+..+... .++.+|...+..++ .||||..|+. +.||.+
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~----------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR----------------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH----------------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 6777888899999877764421 11234555444443 5888888887 468888
Q ss_pred EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--------CCcEEEEecC-CCeEEEEecCCCce
Q 023246 85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--------NDEYVMSGSD-CGHLFIWKKKGGKL 155 (285)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~~~~-dg~v~vwd~~~~~~ 155 (285)
+.|.+.-... ....+++..+.|.....+..+ |... .-.+++++++ ...+++|.....+|
T Consensus 260 ~f~Qiyi~g~-----------~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 260 GFYQIYITGK-----------IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred ceeeeeeecc-----------ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 8777643211 111344444445422222222 2111 0124455444 56789998776666
Q ss_pred EEEEecccccceEeEEcCCCC------------eEEEEecCCcEEEEcCC
Q 023246 156 VRLMVGDRHVVNQLEPHPHIP------------MFATCGIEKTVKLWAPM 193 (285)
Q Consensus 156 ~~~~~~h~~~v~~~~~~p~~~------------~l~t~~~d~~i~iwd~~ 193 (285)
+..+. -..|..+. -+++. .+++-+.+++|++|.-+
T Consensus 328 ll~~~--~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 328 LLDKL--IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred hhhhc--ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 52111 12233333 22222 24456678899999643
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=1.4 Score=36.94 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=64.6
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 81 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d 81 (285)
.+++|.++.||+|+ ..+|+--.+++|.+.+....+.... ..+.-+..+..|....|+.... +|--.+
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~-----------~~~~ck~k~~~IlGF~W~~s~e-~A~i~~ 131 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE-----------YTQECKTKNANILGFCWTSSTE-IAFITD 131 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH-----------HHHHhccCcceeEEEEEecCee-EEEEec
Confidence 57899999999997 8999999999999999854331110 0000022344688899988744 333334
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
.-+-+|...... +.++..+.+... |+-..| .++.+.++
T Consensus 132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~L 169 (657)
T KOG2377|consen 132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVIL 169 (657)
T ss_pred CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEe
Confidence 446666654331 344444555544 666664 66666543
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.76 E-value=2 Score=36.13 Aligned_cols=82 Identities=10% Similarity=-0.102 Sum_probs=53.3
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccC-----------------CCc-eEEEe
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-----------------EDH-SRITL 223 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~ 223 (285)
...+.+++.+|++++.++...=|.|.++|+..+.+ +.+++....-..-..... ... +++-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 34578899999998888877778999999987764 445554333211100000 011 33445
Q ss_pred CCCCeEEEEEecccccceeEe
Q 023246 224 TPDVIMHVLRLQRRQTLAYRE 244 (285)
Q Consensus 224 s~d~~i~vwd~~~~~~~~~~~ 244 (285)
..-|.|.||.++.+..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 667999999999987765543
No 420
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.72 E-value=1.1 Score=32.60 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=24.9
Q ss_pred ccceEeEEcCCCC------eEEEEecCCcEEEEcCCC
Q 023246 164 HVVNQLEPHPHIP------MFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 164 ~~v~~~~~~p~~~------~l~t~~~d~~i~iwd~~~ 194 (285)
..|..++|||.|- .|+....++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999999542 488888999999998754
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.47 E-value=5.8 Score=33.39 Aligned_cols=98 Identities=10% Similarity=0.114 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEE-ecCCCeEEEEec-CCCce---
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS-GSDCGHLFIWKK-KGGKL--- 155 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~-~~~dg~v~vwd~-~~~~~--- 155 (285)
.++++||..+. +.++++.-.........+.| ++|+..+-++ +.-..+|..|-. +.++-
T Consensus 222 ~~l~vWD~~~r----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 222 HSLHVWDWSTR----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp -EEEEEETTTT----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred CeEEEEECCCC----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 45999999887 67777775543333556665 3555554333 334556665543 43431
Q ss_pred -EEEEecc-----------------cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCC
Q 023246 156 -VRLMVGD-----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT 195 (285)
Q Consensus 156 -~~~~~~h-----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~ 195 (285)
+-.+..- ..-|+.+.+|.|.++|..++ .+|.|+.||+...
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2222110 23478999999999966655 7999999998654
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.03 E-value=9.1 Score=34.61 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=70.1
Q ss_pred cceEEEEEecCC--CEEEE-ecCCcEEEEEcCCCCCCCCCC---CCC-ccccCCCCceEeecccCceeeeeEEEec--CC
Q 023246 62 IHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLS---LSP-EDLQKREEPQVYSGHRNSQTVKGVNFFG--PN 132 (285)
Q Consensus 62 ~~v~~i~~s~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 132 (285)
..|+-|....-| +.|+. ..||.|.+|.+..-....... ... ......++...+... ....++++ . ..
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdI-h~~~~ 176 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDI-HDYKK 176 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEE-EecCc
Confidence 346666555544 34544 579999999874221000000 000 000011122222222 23888887 5 56
Q ss_pred CcEEEEecCCCeEEEEecCC--CceE-EEEecccccceEeEEcCCC-----C-eEEEEecCCcEEEEcC
Q 023246 133 DEYVMSGSDCGHLFIWKKKG--GKLV-RLMVGDRHVVNQLEPHPHI-----P-MFATCGIEKTVKLWAP 192 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~--~~~~-~~~~~h~~~v~~~~~~p~~-----~-~l~t~~~d~~i~iwd~ 192 (285)
.++||+++....|.||-... .+.. ..-..|..-|.+|+|-++. . +++.++-.|.+.+|++
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77888888888888876432 1111 1111255678899987643 2 6888889999888776
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.75 E-value=2.9 Score=39.26 Aligned_cols=109 Identities=5% Similarity=-0.106 Sum_probs=63.3
Q ss_pred eeeEEEecCCCcEEEE--ecCCCeEEEEecCCCceE-----EEEe------cccccceEeEEcCCCCe-EEEEecCCcEE
Q 023246 123 VKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLV-----RLMV------GDRHVVNQLEPHPHIPM-FATCGIEKTVK 188 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~--~~~dg~v~vwd~~~~~~~-----~~~~------~h~~~v~~~~~~p~~~~-l~t~~~d~~i~ 188 (285)
+..+.+ .+++...++ .+.+-.|..||+++-... .-+. .....+.++.|.|.-.. .+.+..|+.|+
T Consensus 103 i~~~v~-~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 103 IVIFVC-FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred ceEEEe-ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 444443 456555433 344558999998753211 1111 12234567889987655 67777899999
Q ss_pred EEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246 189 LWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 234 (285)
Q Consensus 189 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~ 234 (285)
+..+.... +..++ ......++. |.+.+..++.|-..|++.-|..
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~-WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVL-WSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEE-eccccceeeEecCCCeEEEeec
Confidence 88775443 22322 222233333 4556667788888888877753
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=9.7 Score=34.27 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=26.4
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
.+.+..+..||+.++|+-=..+|.|.+-+....
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 356778899999999888888898888776544
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.68 E-value=7.3 Score=32.83 Aligned_cols=205 Identities=10% Similarity=0.088 Sum_probs=87.8
Q ss_pred cEEEEe-eCCCcEEEEEccCCcccCCcCCCCCcccccccccCC-CCCcceEEEEEecCCCEEEEe--c-C----CcEEEE
Q 023246 17 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY--N-D----ELVYLF 87 (285)
Q Consensus 17 ~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~--~-d----~~i~iw 87 (285)
++|+.. -..+.|.|.|+.+...... ..+......+.. .--.....+.--|+|++++++ + + |-+.++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~-----l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPR-----LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-E-----EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCc-----eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 455554 4788999999985432111 011111111100 000112223334788877763 2 2 457788
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEEEEecC--------------------CCeEE
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSD--------------------CGHLF 146 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~--------------------dg~v~ 146 (285)
|-.+. +.......... ...-+.+-| .|..+.++|..- ...+.
T Consensus 163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~ 225 (461)
T PF05694_consen 163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH 225 (461)
T ss_dssp -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence 87654 34444433222 112344543 777777777542 45899
Q ss_pred EEecCCCceEEEEeccc--ccceEeEE--cCCCCe-EEEEecCCcEEEEcC-CCCC-----CCCCCCC------------
Q 023246 147 IWKKKGGKLVRLMVGDR--HVVNQLEP--HPHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------ 203 (285)
Q Consensus 147 vwd~~~~~~~~~~~~h~--~~v~~~~~--~p~~~~-l~t~~~d~~i~iwd~-~~~~-----~~~~~~~------------ 203 (285)
+||+.+.+.+.++.--. ..+..+.| .|+..+ ++.+....+|..|-. +.+. +.++...
T Consensus 226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~ 305 (461)
T PF05694_consen 226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK 305 (461)
T ss_dssp EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence 99999999998886322 23445555 566666 666666666655543 2221 1111110
Q ss_pred ----cccceeeccccCCCc-eEEEeCCCCeEEEEEecccccceeE
Q 023246 204 ----AEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAYR 243 (285)
Q Consensus 204 ----~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~~~~~~ 243 (285)
..+++.....+.+++ +.++.--.|.++.||+.....+...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 012222222344455 4456667899999999987655443
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=91.35 E-value=4.5 Score=35.05 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCcEEEEecCC--CeEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCC
Q 023246 132 NDEYVMSGSDC--GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDF 197 (285)
Q Consensus 132 ~~~~l~~~~~d--g~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~ 197 (285)
++...+.|+.+ ..+..||..+.+-. ..+.........++ -+++..+.||.++ .+..||+++...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 56677777753 35777886654322 12221111112222 2566677777543 467888876653
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.28 E-value=7.1 Score=31.87 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=81.6
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCc------EEEEEccCCc-ccCCcCCCCCcccccccccCCC-------CCcceEEEEE
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY 69 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~------v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~i~~ 69 (285)
+.+.++.+.|++ ..+++-+.+|. +..+++.... .... +.......+... -.-..-+|++
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGG------VTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccc------eEeccceeccCCCCCcCCcCCCChhHeEE
Confidence 567889999754 56666677777 5555554311 0000 000000001010 1114457888
Q ss_pred ecCCCEEEEec-C------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-------ecccCceeeeeEEEecCCCcE
Q 023246 70 SNTSELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-------SGHRNSQTVKGVNFFGPNDEY 135 (285)
Q Consensus 70 s~~~~~l~s~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~ 135 (285)
.++|.++++.. + ..|..++..... ...+ .....+ ........+.++++ +++++.
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~---~~~~--------~vP~~~~~~~~~~~~~~~N~G~E~la~-~~dG~~ 160 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLDGRV---IRRF--------PVPAAFLPDANGTSGRRNNRGFEGLAV-SPDGRT 160 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCCCcc---cceE--------ccccccccccCccccccCCCCeEEEEE-CCCCCE
Confidence 88888888875 6 778888866220 0000 000111 12222234889997 999996
Q ss_pred EEEecC-----CC-----------eEEEEecCC-CceEEE----Eec-----ccccceEeEEcCCCCeEE
Q 023246 136 VMSGSD-----CG-----------HLFIWKKKG-GKLVRL----MVG-----DRHVVNQLEPHPHIPMFA 179 (285)
Q Consensus 136 l~~~~~-----dg-----------~v~vwd~~~-~~~~~~----~~~-----h~~~v~~~~~~p~~~~l~ 179 (285)
|+++.+ |+ .|..||..+ ++.... +.. ....|..+.+-+++++|+
T Consensus 161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 665543 22 233445544 323222 221 345688888888888654
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.03 E-value=1.3 Score=23.10 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=26.8
Q ss_pred CCCcEEEE-ecCCCeEEEEecCCCceEEEEecccccceEeEE
Q 023246 131 PNDEYVMS-GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 171 (285)
Q Consensus 131 ~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 171 (285)
|+++++++ ...++.|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 45565544 44688999999998888887765 233444444
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.83 E-value=6.7 Score=36.08 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=41.4
Q ss_pred CcEEEEecCCCeEEEEecCCCceEEEEecccccce-------------EeEEcC--CCCeEEEEec----------CCcE
Q 023246 133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-------------QLEPHP--HIPMFATCGI----------EKTV 187 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~p--~~~~l~t~~~----------d~~i 187 (285)
+..++.++.|+.|.-.|.++|+.+..+.. .+.|. .+.-.| .+..++.++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788888999999999999999877642 11110 111112 1335555532 5789
Q ss_pred EEEcCCCCCC
Q 023246 188 KLWAPMPTDF 197 (285)
Q Consensus 188 ~iwd~~~~~~ 197 (285)
+-+|.+++++
T Consensus 339 ~A~Da~TGkl 348 (764)
T TIGR03074 339 RAFDVNTGAL 348 (764)
T ss_pred EEEECCCCcE
Confidence 9999987763
No 430
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.51 E-value=13 Score=33.65 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCEEEEecCCcEEEEEcCCCCCCCCC----CCCCccccCCCCceEeecccCceeeeeEEEec-CCCcEEEEecCCCeEEE
Q 023246 73 SELLISYNDELVYLFEKNMGLGPSPL----SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-PNDEYVMSGSDCGHLFI 147 (285)
Q Consensus 73 ~~~l~s~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~v~v 147 (285)
..+++.+..+.|.||+.......... .+.............+.....+..|+.+..-. -....|+.+.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 66778888999999998654321100 00000000000000111001222255554311 24567888999999999
Q ss_pred EecCC-------C-------------ceEEEEecccccceEeEEc--CCCCeEEEEecCCcEEEEcCCC--CCC---CC-
Q 023246 148 WKKKG-------G-------------KLVRLMVGDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMP--TDF---PP- 199 (285)
Q Consensus 148 wd~~~-------~-------------~~~~~~~~h~~~v~~~~~~--p~~~~l~t~~~d~~i~iwd~~~--~~~---~~- 199 (285)
|.+++ . ++...+. -...+++++++ ...+++|.++....|.+|-... .+. ..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 97531 1 0122222 23478899998 7777888888888888876533 221 11
Q ss_pred CCCCcccceeeccccCCCc---eEEEeCCCCeEEEEEec
Q 023246 200 LPDNAEKIMKANKQGREDH---SRITLTPDVIMHVLRLQ 235 (285)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~---~~~~~s~d~~i~vwd~~ 235 (285)
...|.-+-++......+.. .+++.+-.|.+.+|++.
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 1123333333333332222 67788889999999883
No 431
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.42 E-value=9.9 Score=32.11 Aligned_cols=204 Identities=9% Similarity=0.080 Sum_probs=93.6
Q ss_pred EEEEcCCCCcEEEEeeCC----------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCC-c-ceEEEEEecCCCE
Q 023246 8 AIVIDPRNPNYFAVGGSD----------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-I-HITGLAYSNTSEL 75 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~i~~s~~~~~ 75 (285)
.+.|.+++..++++...+ ..|..|.+.+.... ...++.... . ....+..++++++
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-------------d~lvfe~~~~~~~~~~~~~s~d~~~ 240 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-------------DELVFEEPDEPFWFVSVSRSKDGRY 240 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--------------EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh-------------CeeEEeecCCCcEEEEEEecCcccE
Confidence 389999864445554333 22666676655311 011112212 2 2567889999997
Q ss_pred EEE-e-c--C-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe---cCCCeEEE
Q 023246 76 LIS-Y-N--D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG---SDCGHLFI 147 (285)
Q Consensus 76 l~s-~-~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~dg~v~v 147 (285)
|+. . + + ..+++.++.... ........+...... ....+.. . .+.+++.. ...+.|..
T Consensus 241 l~i~~~~~~~~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~-~~~~v~~-~-~~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 241 LFISSSSGTSESEVYLLDLDDGG------------SPDAKPKLLSPREDG-VEYYVDH-H-GDRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp EEEEEESSSSEEEEEEEECCCTT------------TSS-SEEEEEESSSS--EEEEEE-E-TTEEEEEE-TT-TT-EEEE
T ss_pred EEEEEEccccCCeEEEEeccccC------------CCcCCcEEEeCCCCc-eEEEEEc-c-CCEEEEeeCCCCCCcEEEE
Confidence 664 2 2 4 567888886530 000233333333322 1333432 2 44444433 23567888
Q ss_pred EecCCCce---EEEEecccccceEeEEcCCCCeEE-EEecCC--cEEEEcCC-CCCCCCCCCC-cccceeeccccCCCce
Q 023246 148 WKKKGGKL---VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEK--TVKLWAPM-PTDFPPLPDN-AEKIMKANKQGREDHS 219 (285)
Q Consensus 148 wd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~-t~~~d~--~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 219 (285)
.++..... ...+..|...+.-..+...+.+|+ .--.++ .|+++++. +.....+... ...+.........+.+
T Consensus 306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred ecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence 88876652 334555555333333334455544 444444 68889988 4433222111 1112222222223334
Q ss_pred EEEeCC---CCeEEEEEeccccc
Q 023246 220 RITLTP---DVIMHVLRLQRRQT 239 (285)
Q Consensus 220 ~~~~s~---d~~i~vwd~~~~~~ 239 (285)
++..+. -++++.+|+.+++.
T Consensus 386 ~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 386 RFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEeCCCCCCEEEEEECCCCCE
Confidence 433333 26666677666544
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.38 E-value=6.2 Score=29.71 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 79 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 79 (285)
..|+.+...+.|.+|++...+. .......--+.|..+.++..|++|++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~--------------~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC--------------PLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC--------------ceeEEEcchhheeEEEeccccceEEEE
Confidence 3444446667899999984431 111112224689999999999999995
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.05 E-value=6.7 Score=29.56 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=61.8
Q ss_pred CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---CC---eEE
Q 023246 73 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CG---HLF 146 (285)
Q Consensus 73 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg---~v~ 146 (285)
+.+|++.....|.+|++.... .+...+|..- +. |..+.+ +..|.|++|--. .. .++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv-~~--V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR 90 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV-GR--VLQLVY-SEAGDYLVTLEEKNKRSPVDFVR 90 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC--------------CceeEEEcch-hh--eeEEEe-ccccceEEEEEeecCCccceEEE
Confidence 345555678889999998331 1445555543 23 889997 999999998533 22 556
Q ss_pred EE---ecC--CCceEE-EEecc---------------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 147 IW---KKK--GGKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 147 vw---d~~--~~~~~~-~~~~h---------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
+| ... ..+++. .+.+| ..++.+++.+|..--|+.|+ ++.+.+|.+..
T Consensus 91 ~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 91 AYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 54 221 122222 22222 33677888888544455555 46788998753
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.94 E-value=15 Score=33.56 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=52.4
Q ss_pred cceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe------ecccCceeeeeEEEecCC---
Q 023246 62 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY------SGHRNSQTVKGVNFFGPN--- 132 (285)
Q Consensus 62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~--- 132 (285)
-.|..|.++|+|++++..+...|.|..+...-+.. ..+... +..-..+++ ........|..+.| +|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~-~~~~~g--~~~i~Crt~~v~~~~~~~~~~~~i~qv~W-hP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN-GEFEDG--KKEINCRTVPVDERFFTSNSSLEIKQVRW-HPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc-ccccCC--CcceeEEEEEechhhccCCCCceEEEEEE-cCCCCC
Confidence 46889999999999888665666666664321100 000000 000011111 11111234888996 665
Q ss_pred CcEEEEecCCCeEEEEecCCCc
Q 023246 133 DEYVMSGSDCGHLFIWKKKGGK 154 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~~~ 154 (285)
+..|+.-..|+++++||+...+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5889888999999999987543
No 435
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.93 E-value=7.4 Score=33.99 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=66.9
Q ss_pred eeeEEEecCC----CcEEEEecCCCeEEEEecC-----CCceEEEEeccc-c----cceEeEEcCCCCeEEEEecCCcEE
Q 023246 123 VKGVNFFGPN----DEYVMSGSDCGHLFIWKKK-----GGKLVRLMVGDR-H----VVNQLEPHPHIPMFATCGIEKTVK 188 (285)
Q Consensus 123 i~~~~~~~~~----~~~l~~~~~dg~v~vwd~~-----~~~~~~~~~~h~-~----~v~~~~~~p~~~~l~t~~~d~~i~ 188 (285)
|.++.| .|- ..-+++.-....|.||.+. .++.+..-..+- . -...+.|+|....|+.-..+..=-
T Consensus 59 V~GlsW-~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 59 VHGLSW-APPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeee-cCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 888885 664 3356666778899999875 233332221111 1 124567999988866555444434
Q ss_pred EEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 189 LWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 189 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+++.+.. .+..-....+.+.+..|...+.+++++.+..=.-++||-..+
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 5555433 222212344556666665656677777777777889985443
No 436
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.92 E-value=8 Score=30.27 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=71.3
Q ss_pred CcceEEEEEecCCCEEEE-ec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246 61 NIHITGLAYSNTSELLIS-YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 137 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s-~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 137 (285)
..-...+.|..+|.++-+ |. ...|+.+|+.++ +......-... ..--.++.+ +++...
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg----------------~~~~~~~l~~~-~FgEGit~~--~d~l~q 104 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG----------------KVLQSVPLPPR-YFGEGITIL--GDKLYQ 104 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS----------------SEEEEEE-TTT---EEEEEEE--TTEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCC----------------cEEEEEECCcc-ccceeEEEE--CCEEEE
Confidence 344678889888887777 54 457999999887 44433332221 123345542 345555
Q ss_pred EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
-.=.++...+||..+.+.+.++.- .+.=..++ .+++.|+.......++++|+.+.+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 566789999999999999888864 34556666 356666666656789999987654
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.44 E-value=13 Score=32.84 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246 132 NDEYVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 132 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
+..++++.+.|+.+++||+.+++++.+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6789999999999999999999997665
No 438
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.19 E-value=11 Score=30.84 Aligned_cols=108 Identities=12% Similarity=0.211 Sum_probs=56.3
Q ss_pred ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee--cccCceeeeeEEEecCC----CcEE
Q 023246 63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPN----DEYV 136 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~----~~~l 136 (285)
..+.|+|.|+|++|++-..|.|++++..... ...+..+. ..........+++ +|+ +.+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~--------------~~~v~~~~~v~~~~~~gllgia~-~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSL--------------KTPVADLPEVFADGERGLLGIAF-HPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEE--------------CEEEEE-TTTBTSTTBSEEEEEE--TTCCCC-EEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcC--------------cceecccccccccccCCccccee-ccccCCCCEEE
Confidence 4678999999999998789999999933220 00111110 0111123788997 773 3333
Q ss_pred EEecCC--------CeEEEEecCCC-------ceE-EEEec---ccccceEeEEcCCCCeEEEEecCC
Q 023246 137 MSGSDC--------GHLFIWKKKGG-------KLV-RLMVG---DRHVVNQLEPHPHIPMFATCGIEK 185 (285)
Q Consensus 137 ~~~~~d--------g~v~vwd~~~~-------~~~-~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~ 185 (285)
++-+.. ..|.-|.+..+ +.+ ..+.. ....-..|+|.|++.+.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 333321 24544554433 111 12222 223456699999998766666444
No 439
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.14 E-value=12 Score=31.14 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred EEcCCCCcEEEEeeCCCcEEE--EEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEE
Q 023246 10 VIDPRNPNYFAVGGSDEYARV--YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYL 86 (285)
Q Consensus 10 ~~s~~~~~~l~tg~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~i 86 (285)
+|.++|..+|+++..||.-.+ .|+.+++.. ++..+-........++|+.+.++- -.+..|.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---------------QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---------------QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---------------E---SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEE---------------ECccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence 467777667777777776555 466666521 111111112224566787776544 45678888
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEEecC----------------------CC
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD----------------------CG 143 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~----------------------dg 143 (285)
.|+.+. +....+.....- +....+ .+.++..++..-. ..
T Consensus 107 vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 107 VDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp EETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred EECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 888876 343444433332 221222 1445655543211 23
Q ss_pred eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCC-----cEEEEcC
Q 023246 144 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAP 192 (285)
Q Consensus 144 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~ 192 (285)
.|...|+.+|+....+. ....+..+.|+|....++.=|..| .-|||-+
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i 221 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI 221 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence 56777888887655554 345778899999877755555443 2366655
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.71 E-value=2.3 Score=37.49 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=40.6
Q ss_pred CCCcEEEEecCCCeEEEEecCC----CceEEEE-ec-c--------------------cccceEeEEcC----CCCeEEE
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKG----GKLVRLM-VG-D--------------------RHVVNQLEPHP----HIPMFAT 180 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~----~~~~~~~-~~-h--------------------~~~v~~~~~~p----~~~~l~t 180 (285)
++...++.+..||.+....... +...... .. + ...+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777778888888887654 2222211 11 1 12345566666 6778999
Q ss_pred EecCCcEEEEcCCCCCC
Q 023246 181 CGIEKTVKLWAPMPTDF 197 (285)
Q Consensus 181 ~~~d~~i~iwd~~~~~~ 197 (285)
.+.|+++|+||+.++.+
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999988765
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.52 E-value=13 Score=30.89 Aligned_cols=103 Identities=18% Similarity=0.316 Sum_probs=54.9
Q ss_pred ceEEEEEecCCCEEEEec------------CC-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe
Q 023246 63 HITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 129 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 129 (285)
....|+|.++|+++++.. .+ .|.+++-..+.+ .......|...-.. ...+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG------------~~d~~~vfa~~l~~--p~Gi~~- 79 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG------------KYDKSNVFAEELSM--VTGLAV- 79 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC------------CcceeEEeecCCCC--ccceeE-
Confidence 466899999999887742 22 676665433210 00122333322222 577886
Q ss_pred cCCCcEEEEecCCCeEEEEecCC-----Cc--eE-EEEec----ccccceEeEEcCCCCeEEEEe
Q 023246 130 GPNDEYVMSGSDCGHLFIWKKKG-----GK--LV-RLMVG----DRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 130 ~~~~~~l~~~~~dg~v~vwd~~~-----~~--~~-~~~~~----h~~~v~~~~~~p~~~~l~t~~ 182 (285)
.+++ .++ +......++.|... ++ .+ ..+.. +......++|.|+|.+.++.+
T Consensus 80 ~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 80 AVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 6777 444 34443333435431 12 12 22222 234577899999998755544
No 442
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.41 E-value=17 Score=32.01 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=101.3
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 96 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~ 96 (285)
..++.++.++.|.-.|..+++.+.......+..... . ......-..+++. +++.++...++.|.-.|..++
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~-~---~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG---- 140 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP-V---MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG---- 140 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCccccc-c---cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence 467777888999999999998654433221100000 0 0000000112222 344555556899999999887
Q ss_pred CCCCCCccccCCCCceEeecc--cCceeeee-EEEecCCCcEEEEec------CCCeEEEEecCCCceEEEEecccc---
Q 023246 97 PLSLSPEDLQKREEPQVYSGH--RNSQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMVGDRH--- 164 (285)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~~h~~--- 164 (285)
+.+-.+... .....+.+ -.. .++. ++.+. .+|.|..+|.++|+.+..+..-..
T Consensus 141 ------------k~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~ 205 (527)
T TIGR03075 141 ------------KVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMG 205 (527)
T ss_pred ------------CEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcc
Confidence 333332211 10000111 111 1343 44432 268999999999998876542110
Q ss_pred ----------------------------cc-eEeEEcCCCCeEEEEec-----CC-----------cEEEEcCCCCCC--
Q 023246 165 ----------------------------VV-NQLEPHPHIPMFATCGI-----EK-----------TVKLWAPMPTDF-- 197 (285)
Q Consensus 165 ----------------------------~v-~~~~~~p~~~~l~t~~~-----d~-----------~i~iwd~~~~~~-- 197 (285)
.+ ..+++.|...++..+.. ++ .|.-.|++++++
T Consensus 206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred cccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence 11 12356665555444331 12 455667777764
Q ss_pred -CCCCCCc--------cccee-eccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246 198 -PPLPDNA--------EKIMK-ANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241 (285)
Q Consensus 198 -~~~~~~~--------~~~~~-~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~ 241 (285)
.+...|. .+++. ..........++.+.++|.++++|..+++.+.
T Consensus 286 ~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 286 HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 1221121 11111 10011112367789999999999988886653
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=9.6 Score=32.88 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=48.1
Q ss_pred eeeEEEecCCCcEEEEecCCCeEEEEe---------cCCCceEE---EEe--------cccccceEeEEcCCC---CeEE
Q 023246 123 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV--------GDRHVVNQLEPHPHI---PMFA 179 (285)
Q Consensus 123 i~~~~~~~~~~~~l~~~~~dg~v~vwd---------~~~~~~~~---~~~--------~h~~~v~~~~~~p~~---~~l~ 179 (285)
|..+.. ++.|..++-.+.+|.+.++= .++|+..- ++. ...-.+..++|+|+. ..|+
T Consensus 106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 666775 89999998888888765542 22343221 111 111246678999976 5577
Q ss_pred EEecCCcEEEEcCCCC
Q 023246 180 TCGIEKTVKLWAPMPT 195 (285)
Q Consensus 180 t~~~d~~i~iwd~~~~ 195 (285)
.-..|.+||+|++...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 7788999999998643
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.73 E-value=23 Score=32.77 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=23.1
Q ss_pred eEEEeCCCCeEEEEEecccccceeEeee
Q 023246 219 SRITLTPDVIMHVLRLQRRQTLAYRERR 246 (285)
Q Consensus 219 ~~~~~s~d~~i~vwd~~~~~~~~~~~~~ 246 (285)
.++.++++|.++++|.++++.+...+..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeeceee
Confidence 7888999999999999998877665443
No 445
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.61 E-value=2 Score=21.05 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEecCCCeEEEEecCCCceEEEE
Q 023246 135 YVMSGSDCGHLFIWKKKGGKLVRLM 159 (285)
Q Consensus 135 ~l~~~~~dg~v~vwd~~~~~~~~~~ 159 (285)
.++.++.+|.++.+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887653
No 446
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.37 E-value=24 Score=32.65 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred cceEEEEEec----CC---CEEEEec-----CCcEEEEEcCCCCCCCCCCCCC--------ccccCCCCceEeecccCce
Q 023246 62 IHITGLAYSN----TS---ELLISYN-----DELVYLFEKNMGLGPSPLSLSP--------EDLQKREEPQVYSGHRNSQ 121 (285)
Q Consensus 62 ~~v~~i~~s~----~~---~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 121 (285)
..++.+.|-+ .. ..+++.+ ...|.-|.+.....+....+.. ...++...++....-....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 3667777765 22 2555532 3469999987653111111100 1111111222222222223
Q ss_pred eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE----e---------------cccccceEeEEcCCCCeEEEEe
Q 023246 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V---------------GDRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~---------------~h~~~v~~~~~~p~~~~l~t~~ 182 (285)
.|.++.. ..-+.+++....||+|.++|..+-+.+... . ..-..+..++|||++-.++.-.
T Consensus 261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 4778875 667778999999999999997765444322 0 0112344588999999899888
Q ss_pred cCCcEE
Q 023246 183 IEKTVK 188 (285)
Q Consensus 183 ~d~~i~ 188 (285)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 898855
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.72 E-value=6.3 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=23.7
Q ss_pred cceEEEEEecCCC------EEEE-ecCCcEEEEEcCC
Q 023246 62 IHITGLAYSNTSE------LLIS-YNDELVYLFEKNM 91 (285)
Q Consensus 62 ~~v~~i~~s~~~~------~l~s-~~d~~i~iwd~~~ 91 (285)
..+..++|||.|- +|++ .+++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3789999999652 6776 4699999998764
No 448
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=86.53 E-value=2.2 Score=20.19 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEE
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYD 32 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd 32 (285)
..|.+++..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577888877 5888899999999984
No 449
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.43 E-value=14 Score=29.08 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=92.3
Q ss_pred ccceeEEEEcCCCCcEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC
Q 023246 3 SIRLNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 73 (285)
Q Consensus 3 ~~~v~~~~~s~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 73 (285)
....+...|.+.+ ++-+|+.. .+.|++|+...+ ...+.|+..|+|
T Consensus 147 ~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------------------~gpyGi~atpdG 200 (353)
T COG4257 147 DANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQG-------------------------GGPYGICATPDG 200 (353)
T ss_pred CCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCCC-------------------------CCCcceEECCCC
Confidence 3456677888875 77777753 234555554422 245678899999
Q ss_pred CEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246 74 ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 151 (285)
Q Consensus 74 ~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 151 (285)
..-.+ -.+..|-..|...+ ....+..... ......+- .++.++.-++....+.+..+|-.
T Consensus 201 svwyaslagnaiaridp~~~-----------------~aev~p~P~~~~~gsRriw-sdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG-----------------HAEVVPQPNALKAGSRRIW-SDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred cEEEEeccccceEEcccccC-----------------CcceecCCCcccccccccc-cCccCcEEEeccCCceeeEeCcc
Confidence 86555 45777777776654 2223322221 01133333 26778888887778888888876
Q ss_pred CCce-EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC
Q 023246 152 GGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 200 (285)
Q Consensus 152 ~~~~-~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 200 (285)
...- ...+.+-+..-.++.....++.-++--..+.|.-+|.++..+..+
T Consensus 263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL 312 (353)
T ss_pred cccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence 5442 234444455566676666666555444456777777776655443
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=86.33 E-value=17 Score=29.81 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=62.5
Q ss_pred CcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246 61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 140 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 140 (285)
...+..+.+.|++.+++.+..|.+..-.-..+ +........ ....++++.+ .++++.++.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLAR 233 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCC----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEec
Confidence 34577888888887887787776653211111 112222211 1234888887 78888776654
Q ss_pred CCCeEEEEecCCCceEEEEec----ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 141 DCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 141 ~dg~v~vwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
.|.+++=..+.+..-..... ....+.++.+.|++..++ ++.+|.+.. ....+
T Consensus 234 -~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G 289 (334)
T PRK13684 234 -GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG 289 (334)
T ss_pred -CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC
Confidence 57665323344433222111 123578889998776554 455776543 34433
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.20 E-value=19 Score=30.33 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=63.7
Q ss_pred CcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCC--CceEeecccCceeeeeEEEecCCCcEEEE
Q 023246 61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 138 (285)
...++.+.|.+++.+++.+..|.+..= ...+. .+. .............+.++.| .+++..+++
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~-------------~~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a~ 344 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL-------------TEEDFDFEEADIKSRGFGILDVGY-RSKKEAWAA 344 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCC-------------cccccceeecccCCCCcceEEEEE-cCCCcEEEE
Confidence 456889999999999988887776543 22220 000 1111111111123788887 666665554
Q ss_pred ecCCCeEEEEecCCCceEEEEe---cccccceEeEEcCCCCeEEEEecCCcEEEE
Q 023246 139 GSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 190 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iw 190 (285)
+..|.+.... ..|+.-.... .-....+.+.|.++++.+++| .+|.|.-|
T Consensus 345 -G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 345 -GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4567666553 3344422222 223567889988776666655 47776544
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.10 E-value=3.2 Score=21.30 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=18.7
Q ss_pred ceeEEEEcCCCCcEEEEeeCC--CcEEEE
Q 023246 5 RLNAIVIDPRNPNYFAVGGSD--EYARVY 31 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~d--g~v~iw 31 (285)
.-....|+|||..++.++..+ |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345688999986667777777 777666
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.89 E-value=14 Score=30.79 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcC----CCCe--EEEEec-C---CcEEEEcCCC--CCCC
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP----HIPM--FATCGI-E---KTVKLWAPMP--TDFP 198 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p----~~~~--l~t~~~-d---~~i~iwd~~~--~~~~ 198 (285)
|...+++.....+-+.+||+. |+.+..+. .+.++.+..-. .++. |+.++. + .+|++|.+.. +.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 455678888889999999998 77777765 23444444321 2333 555542 2 4699997643 3332
Q ss_pred CCCC-------Ccccceeec--cccCC-CceEEEeCCCCeEEEEEecc
Q 023246 199 PLPD-------NAEKIMKAN--KQGRE-DHSRITLTPDVIMHVLRLQR 236 (285)
Q Consensus 199 ~~~~-------~~~~~~~~~--~~~~~-~~~~~~~s~d~~i~vwd~~~ 236 (285)
.+.. ....++-+. ..... .-+.+....+|.+..|.+..
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~ 190 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTD 190 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEe
Confidence 2211 111122221 11122 23666677889999998863
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.74 E-value=9.5 Score=26.37 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=71.8
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEEEecC
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYND 81 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~s~~d 81 (285)
..-.|.... ..|++++.-|+|.|++.......... ...++.. -.-...|++++--+ +...|+.|+.
T Consensus 2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~-------LNin~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGR-QDSDISF-------LNINQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred eEEEeCCCc-eeEEEEecCCEEEEECCCcccccccc-ccCceeE-------EECCCceEEEEEEecCCCCCcCEEEEecc
Confidence 445677765 58888899999999998754321110 1111111 12244677776544 2348888999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe--cC-CCcEEEEecCCCeEEEEecCCCceEEE
Q 023246 82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GP-NDEYVMSGSDCGHLFIWKKKGGKLVRL 158 (285)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~ 158 (285)
..+..||+... .. ..++.-.+. +.++.+- .. ....++.| ....|.-||.+..+...+
T Consensus 73 t~llaYDV~~N----------------~d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 73 TSLLAYDVENN----------------SD-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ceEEEEEcccC----------------ch-hhhhhCccc--eeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 99999999876 11 122222233 6666541 22 23444444 467788888775555544
Q ss_pred E
Q 023246 159 M 159 (285)
Q Consensus 159 ~ 159 (285)
.
T Consensus 133 V 133 (136)
T PF14781_consen 133 V 133 (136)
T ss_pred e
Confidence 3
No 455
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.38 E-value=3.6 Score=21.15 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.8
Q ss_pred EEEEecCCCeEEEEecCCCceEEEEec
Q 023246 135 YVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.++.++.+|.|+-.|.++|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355669999999999999999988764
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.72 E-value=20 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=37.2
Q ss_pred CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---C----CcEEEEEcCCC
Q 023246 25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D----ELVYLFEKNMG 92 (285)
Q Consensus 25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---d----~~i~iwd~~~~ 92 (285)
-..|.+||..+.+.... ..+-.+.|+.+.|..+.+++++|. + ..+..||..+.
T Consensus 15 C~~lC~yd~~~~qW~~~---------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP---------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecC---------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 35689999987764211 133567899999998778888763 2 35788888765
No 457
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.65 E-value=25 Score=29.38 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=51.5
Q ss_pred CcceEEEEEecCCCEEEE-ec----CC-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246 61 NIHITGLAYSNTSELLIS-YN----DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s-~~----d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 134 (285)
...+..+.|+|...-++. |- +. .-+||-+.... .....+..+.. ..+..=.||.++|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------------~~~~~v~~~~~-~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------------SNVKKVHRRME-GESVGHEFWVPDGS 250 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------EESS---T-TEEEEEEEE-TTSS
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------------CcceeeecCCC-CcccccccccCCCC
Confidence 345677889997654333 53 22 13677766431 12222222322 23556667899998
Q ss_pred EEEE-----ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC
Q 023246 135 YVMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 184 (285)
Q Consensus 135 ~l~~-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d 184 (285)
.+.- ++.+..|.-+|+.+++...... ......+-.++++++++.=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 7654 3335678888888876543322 2234455567898887765554
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.58 E-value=4.4 Score=20.76 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=18.8
Q ss_pred ccccceEeEEcCCCCeEEEEe-cC--CcEEEE
Q 023246 162 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW 190 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~-~d--~~i~iw 190 (285)
....-....|+|||++|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345567789999999966655 44 555555
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.89 E-value=31 Score=30.00 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCC---------CCC----CCCC-------C-CCcccceeeccccCC--CceEE
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPM---------PTD----FPPL-------P-DNAEKIMKANKQGRE--DHSRI 221 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~---------~~~----~~~~-------~-~~~~~~~~~~~~~~~--~~~~~ 221 (285)
.|..+..++.|..++-+|.+|.+.++=++ .++ .+++ . ...-.+....|-... +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999999976654321 111 0111 0 011112233333332 55788
Q ss_pred EeCCCCeEEEEEecccccc
Q 023246 222 TLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 222 ~~s~d~~i~vwd~~~~~~~ 240 (285)
..+.|..+++|++.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8899999999999887665
No 460
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=24 Score=28.18 Aligned_cols=192 Identities=7% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCC-cceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246 59 KNN-IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 136 (285)
Q Consensus 59 ~h~-~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 136 (285)
+|- ..|..+.....-.++..|. ---+-+|+.... .....+..-..+.-+..+.+ .++++
T Consensus 39 ghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~----------------t~~~l~~~i~~~~l~~Dv~v---se~yv 99 (370)
T COG5276 39 GHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQ----------------THDVLLSVINARDLFADVRV---SEEYV 99 (370)
T ss_pred eeccCCcccccccccccccccCceEeeccccCcccc----------------cCcceEEEEehhhhhheeEe---cccEE
Q ss_pred EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccC-
Q 023246 137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR- 215 (285)
Q Consensus 137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 215 (285)
..+..+.-+++.|+.+......+..-.-.=..-.|.-.|++...+..|.-+.+.|+....-.++.+.....--..+.-.
T Consensus 100 yvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I 179 (370)
T COG5276 100 YVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI 179 (370)
T ss_pred EEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE
Q ss_pred CCceEEEeCCCCeEEEEEecccccceeEeeeccc-cccCCCCCcCeEEEeecCCC
Q 023246 216 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNA-ADFESDEEEGETYLLGFSDS 269 (285)
Q Consensus 216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~ 269 (285)
.+.+...+..|+-+.+.|+.....+..+.+..-+ ..-...-.+++.|++...+|
T Consensus 180 SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 180 SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.04 E-value=17 Score=28.99 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=42.7
Q ss_pred CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe------cCCcEEEEcCCCCCCCCCCC
Q 023246 141 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD 202 (285)
Q Consensus 141 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~------~d~~i~iwd~~~~~~~~~~~ 202 (285)
....|++||..+.+-..--.+-.+.|++|.|..+.+.++.|. ....+..||........+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 356799999886655544444567899999986666666664 34568889988776544443
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=41 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.9
Q ss_pred ceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246 63 HITGLAYSNTSELLISYNDELVYLFEKNMG 92 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~ 92 (285)
.+-.+.|+.+..+++...+|++++|++...
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchh
Confidence 788999999999999999999999998754
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.33 E-value=6.7 Score=33.64 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=48.1
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 92 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~ 92 (285)
-++|.++..|-|++||--.. ..++.+.+-...|..|..+.+|+++.+.....+.+-|+...
T Consensus 574 GyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK 634 (776)
T ss_pred ceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence 59999999999999996533 22333366677899999999999888877788888888654
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.88 E-value=29 Score=28.39 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=46.0
Q ss_pred ceEeecccCceeeeeEEEec------CCCcEEEEecCCCeEEEEecCCCceEE---EE-ecccccceEeEEcCCCCeEEE
Q 023246 111 PQVYSGHRNSQTVKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVR---LM-VGDRHVVNQLEPHPHIPMFAT 180 (285)
Q Consensus 111 ~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~dg~v~vwd~~~~~~~~---~~-~~h~~~v~~~~~~p~~~~l~t 180 (285)
...+..|.. +..+.|.. -.+.++++.-..+.|....+..+..+. .+ ......+..+++.|||.+.++
T Consensus 246 ~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 246 VFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred ceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 344444433 56666531 246677777777888888887553322 22 233447899999999999888
Q ss_pred EecCCcEE
Q 023246 181 CGIEKTVK 188 (285)
Q Consensus 181 ~~~d~~i~ 188 (285)
-..+|.|.
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 77788763
No 465
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=80.31 E-value=26 Score=27.41 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=65.3
Q ss_pred ceEEEEEecCCCEEEE-e-cC--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246 63 HITGLAYSNTSELLIS-Y-ND--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 138 (285)
Q Consensus 63 ~v~~i~~s~~~~~l~s-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 138 (285)
.+...++++++..++. . .+ ..++++..... ....+.+. .+..-.| ++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence 6889999999986665 3 24 44555544322 22222222 2777775 888887777
Q ss_pred ecCCCeEEEEe-cCCCceE-EEEecc--cccceEeEEcCCCCeEEEEe---cCCcEEEEcC
Q 023246 139 GSDCGHLFIWK-KKGGKLV-RLMVGD--RHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 192 (285)
Q Consensus 139 ~~~dg~v~vwd-~~~~~~~-~~~~~h--~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~ 192 (285)
...+....++. ..+++.. ..+... ...|..+.++|||..++... .++.|.+--+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 67666666663 3333322 112211 12899999999999866555 3466766654
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.53 E-value=38 Score=28.82 Aligned_cols=204 Identities=10% Similarity=0.052 Sum_probs=99.9
Q ss_pred CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCC
Q 023246 16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG 94 (285)
Q Consensus 16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~ 94 (285)
..+++.=+.||.+.+|+-+.--.... .+..+ .. ..+.|.+....|+++ ++..+..|....-..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~----------lp~~l---lP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~ 208 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRF----------LPDFL---LP---GPLCYCPRTDSFVTASSSWTLECYKYQDLAS 208 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEE----------cCCCC---CC---cCeEEeecCCEEEEecCceeEEEecHHHhhh
Confidence 46888889999999999764421100 11111 12 246778877777665 578888888753321
Q ss_pred CCCCCCC-------CccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccce
Q 023246 95 PSPLSLS-------PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 167 (285)
Q Consensus 95 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 167 (285)
....... ....++...--++........|..+.+ +.....++.-+ ...+.+.+.. |+.....+- .....
T Consensus 209 ~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~-~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krL-d~~p~ 284 (418)
T PF14727_consen 209 ASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRF-SSSESDIVVLG-ERSLFCLKDN-GSLRFQKRL-DYNPS 284 (418)
T ss_pred ccccccccccccccccccccccceeEEECCceeEEEEEEEc-CCCCceEEEEe-cceEEEEcCC-CeEEEEEec-CCcee
Confidence 1110000 000111112222322222112333333 22333333333 3556666653 544333322 22222
Q ss_pred EeE-------EcCCCC-eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 168 QLE-------PHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 168 ~~~-------~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
+++ ..|+.+ .++.++.++++.+|.=..-....-..+..-.+...........+++.+.+|.+.+-=+.+...
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 221 122222 488888899999986433322111112222223322233466899999999999987776543
No 467
>PRK10115 protease 2; Provisional
Probab=79.49 E-value=51 Score=30.27 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=58.8
Q ss_pred eeEEEEcCCCCcEEEEee-CCC----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-Ee
Q 023246 6 LNAIVIDPRNPNYFAVGG-SDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY 79 (285)
Q Consensus 6 v~~~~~s~~~~~~l~tg~-~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~ 79 (285)
+..+.|+|++ ++|+.+. .+| .|++.|+.+++.+ ...+.+ .-..++|+++++.|+ +.
T Consensus 129 l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l--------------~~~i~~---~~~~~~w~~D~~~~~y~~ 190 (686)
T PRK10115 129 LGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY--------------PELLDN---VEPSFVWANDSWTFYYVR 190 (686)
T ss_pred EeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC--------------CccccC---cceEEEEeeCCCEEEEEE
Confidence 6678899986 5666543 333 4778888776521 111111 114589999997444 43
Q ss_pred c-C-----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEec
Q 023246 80 N-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKK 150 (285)
Q Consensus 80 ~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~ 150 (285)
. + ..|+.+++.++. .+....+....... ..... .+.++++++..+ .++.+.+++.
T Consensus 191 ~~~~~~~~~~v~~h~lgt~~--------------~~d~lv~~e~~~~~-~~~~~-~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 191 KHPVTLLPYQVWRHTIGTPA--------------SQDELVYEEKDDTF-YVSLH-KTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ecCCCCCCCEEEEEECCCCh--------------hHCeEEEeeCCCCE-EEEEE-EcCCCCEEEEEEECCccccEEEEEC
Confidence 2 2 357777776651 01122333322221 11222 244777665433 3567888884
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.99 E-value=30 Score=29.50 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=86.5
Q ss_pred ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceE-EEEEecCCC-EEEEecCC
Q 023246 5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GLAYSNTSE-LLISYNDE 82 (285)
Q Consensus 5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~-~l~s~~d~ 82 (285)
.|..+-..||+ ..++.-+. .++.++++.+...... + .+.. .+ ......|+ .+..-..|. +++...||
T Consensus 222 ~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~r-k---l~~d-sp----g~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 222 DVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIR-K---LVDD-SP----GDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred chHhhEECCCC-CEEEEecC-CeEEEEeecccccchh-h---hhhc-CC----CchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 45567788986 55555444 7889999876543211 0 0000 00 00001111 111112233 45555688
Q ss_pred cEEEE-EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246 83 LVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 161 (285)
Q Consensus 83 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 161 (285)
.|.-| |.....+ +....++.++-...+ +..+.- ..+.+-+++-+..|++.++.....+.+..-..
T Consensus 291 ~vsQWFdvr~~~~-----------p~l~h~R~f~l~pa~--~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~ 356 (733)
T COG4590 291 LVSQWFDVRRDGQ-----------PHLNHIRNFKLAPAE--VQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA 356 (733)
T ss_pred ceeeeeeeecCCC-----------CcceeeeccccCccc--ceeecc-ccccceEEEEcCCCceeeeecccCcceehhhh
Confidence 88776 5544311 111222333322222 333331 33445677778888888876544444322222
Q ss_pred ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
-..+.-++++|.+.++++-. .|.|+++.+++..
T Consensus 357 -~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 357 -YQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred -hcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 23567789999999987654 5789999887654
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.00 E-value=0.27 Score=41.27 Aligned_cols=110 Identities=5% Similarity=0.016 Sum_probs=71.6
Q ss_pred ecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcccc
Q 023246 129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKI 207 (285)
Q Consensus 129 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 207 (285)
|-+.+.-++.++.+..+..||-. ++....+. ..+....++|+-++.. ++.+-..+.+.+||++...-+++.......
T Consensus 42 w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 46777778888888999999976 55554444 2456677888888777 555567789999999876544433222222
Q ss_pred eeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246 208 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240 (285)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~ 240 (285)
..+..++.....++.+...+.+.+++.+..+..
T Consensus 120 ~sll~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 120 KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred HHHHhhccCCccccccccccceEEEeccchhhh
Confidence 223333444445566667788888887655443
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.05 E-value=70 Score=30.54 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCeEEEEe-cCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 142 CGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 142 dg~v~vwd-~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
+|.++.|+ ++.++.+.-+....-+-.-.+++|.+.++++|- ...+++|++-..+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~ 965 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKK 965 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHH
Confidence 45677777 345664444432222223356678777655443 4689999986654
No 471
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.12 E-value=70 Score=30.11 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=44.7
Q ss_pred cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246 17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 92 (285)
Q Consensus 17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~ 92 (285)
+.+..|+.+|.+.+|.+........... -........ .-+..+|..+...+.-.++..-.|+.|.++++...
T Consensus 27 ~~l~vGt~~G~L~lY~i~~~~~~~~~~~--~~~~~~~~~--~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 27 NHLYVGTRDGDLYLYSIYERGNPESVEL--VTETVKFEK--EFSKKPINKLLVCASLELLLILSDSQIAVHKLPEL 98 (877)
T ss_pred CEEEEEcCCCcEEEEeccccccccchhh--hcchhHHhh--hhccchhHHHhhcchhcchheecCCcceeeecCcc
Confidence 7899999999999999986542111000 000000000 11256777777777777777777888888887655
No 472
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=75.46 E-value=18 Score=33.47 Aligned_cols=81 Identities=15% Similarity=-0.016 Sum_probs=51.5
Q ss_pred cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCc----CCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-
Q 023246 4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 78 (285)
Q Consensus 4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s- 78 (285)
+.|.++....-+ ..++..-.||+|.++|-.+-+.+... .....+.......+...+-.++..++|||.+..++.
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 457777777754 78999999999999998887655444 222222222111111122235667899999987777
Q ss_pred ecCCcEE
Q 023246 79 YNDELVY 85 (285)
Q Consensus 79 ~~d~~i~ 85 (285)
..++.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 5577754
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.93 E-value=99 Score=30.33 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=76.5
Q ss_pred EEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-------cEEEEe
Q 023246 67 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-------EYVMSG 139 (285)
Q Consensus 67 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~l~~~ 139 (285)
+-+-|.=...-...|+.+.+|+..++ .....+.+-... |..+...-|.. ++++.-
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~----------------~e~~~~d~~sht--Il~V~LvkPkpgvFv~~IqhlLvv 145 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESD----------------NELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQHLLVV 145 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCC----------------Cccccccchhhh--heeeeeecCCCCcchhhhheeEEe
Confidence 33334434444456999999999886 344445444332 55444322222 233333
Q ss_pred cCCCeEEEEecC----CCce-----EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC----CC-------C---
Q 023246 140 SDCGHLFIWKKK----GGKL-----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PT-------D--- 196 (285)
Q Consensus 140 ~~dg~v~vwd~~----~~~~-----~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~-------~--- 196 (285)
..--.|.++-+. ++.. ..++....-.|.++....+|+.|++|- || .+|.+. .+ +
T Consensus 146 aT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 146 ATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred cccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccC
Confidence 333445554332 1111 122233356788888777888777665 55 455431 10 0
Q ss_pred -----------CCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 197 -----------FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 197 -----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
+.+++ .+..++..+. .......+.+-+..|.+.+|++...
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~-ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQIT-IDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeE-eccccceeeeeccCceEEEEEccCC
Confidence 01122 1222332221 1223347788899999999999873
No 474
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=72.89 E-value=48 Score=26.74 Aligned_cols=71 Identities=13% Similarity=0.280 Sum_probs=50.1
Q ss_pred eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc-cc--eE--eEEcCCCCeEEEEecCCcEEEEcCC
Q 023246 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VV--NQ--LEPHPHIPMFATCGIEKTVKLWAPM 193 (285)
Q Consensus 122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-~v--~~--~~~~p~~~~l~t~~~d~~i~iwd~~ 193 (285)
.++++.. ..+|.+|++.-.-..|.+.|.++|+.+..+.+... .. .. .+|=.+-+++-....++.|.++|-.
T Consensus 145 HiNsV~~-~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDK-DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred Eeeeeee-cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3788886 78899999999999999999999999999876522 11 11 2222222334344577899999873
No 475
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=72.35 E-value=55 Score=27.18 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=33.2
Q ss_pred EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec--CCcEEEE
Q 023246 138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI--EKTVKLW 190 (285)
Q Consensus 138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~--d~~i~iw 190 (285)
.+..+|.+.-||..+.. ...+...-...+.++.+|++.+++.|-. -...+.|
T Consensus 194 ~g~~~GRl~~YD~~tK~-~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKV-TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred cCCCccceEEecCcccc-hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 34567888888876443 3333333456778999999999777642 2334556
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.30 E-value=30 Score=24.03 Aligned_cols=116 Identities=7% Similarity=0.061 Sum_probs=62.1
Q ss_pred EEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE--ecC--CCcEEEEecCC
Q 023246 68 AYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF--FGP--NDEYVMSGSDC 142 (285)
Q Consensus 68 ~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~l~~~~~d 142 (285)
+|......|++ ..-++|.|++.......... ....++.+.-.+. |++++- +.+ ....|+.|+ .
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt-~ 72 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------QDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGT-Q 72 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc--------ccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEec-c
Confidence 45555555666 45899999987654200000 1123444443322 666653 121 234566666 5
Q ss_pred CeEEEEecCCCceEEEEecccccceEeEEcC---CCCeEEEEecCCcEEEEcCCCCC
Q 023246 143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
..+..||+....-+..-.. ...|+++.+-. ...-++..+....|.-+|..+.+
T Consensus 73 t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 6788999987665543332 35677776632 11224444446677777765543
No 477
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=72.28 E-value=1.1e+02 Score=30.39 Aligned_cols=42 Identities=7% Similarity=0.104 Sum_probs=24.1
Q ss_pred CCceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCC
Q 023246 152 GGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP 194 (285)
Q Consensus 152 ~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~ 194 (285)
.|..++.++...+.+..+ -.|.++. +++.+.+|.++.-..+.
T Consensus 753 ~Gn~l~ilrd~~s~~~~~-~~~~~q~~~l~~~~~g~L~~vSt~d 795 (1899)
T KOG4659|consen 753 SGNVLRVLRDNDSLFDLE-TTLGGQTTLLMSAYDGTLEQVSTRD 795 (1899)
T ss_pred CCcEEEEEecCCCCccee-ecCCCcEEEEEEecCCceeEeccCC
Confidence 355566665444444333 3455554 66777788887776544
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=61 Score=31.24 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=22.5
Q ss_pred cCCCCeEEEEecCCcEEEEcCCCCC
Q 023246 172 HPHIPMFATCGIEKTVKLWAPMPTD 196 (285)
Q Consensus 172 ~p~~~~l~t~~~d~~i~iwd~~~~~ 196 (285)
.+++..++++..||.+.+||...+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7788999999999999999998764
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.84 E-value=92 Score=29.10 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCCcceEEEEEe---cC----CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEec
Q 023246 59 KNNIHITGLAYS---NT----SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFG 130 (285)
Q Consensus 59 ~h~~~v~~i~~s---~~----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 130 (285)
.-..+|..|+|+ .. ..+|+.-....+.|+................ .-....+..+..+. +.....+++|..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s-~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPS-RIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcc-ccccceeEEechhhcCCCccceEEecc
Confidence 346789999998 31 2477777778888888433211000000000 00112333333221 222377899833
Q ss_pred CCCcEEEEecCCCeEEEEecCCCc-----eEEEEeccccc----------ceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 131 PNDEYVMSGSDCGHLFIWKKKGGK-----LVRLMVGDRHV----------VNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 131 ~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~----------v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
.+.+.||.....|...||++.... .+.....+.+. -..+.|.++.+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 456789999999999999992111 11111111222 236789888788877764 57888998776
Q ss_pred CC
Q 023246 196 DF 197 (285)
Q Consensus 196 ~~ 197 (285)
..
T Consensus 235 ~~ 236 (765)
T PF10214_consen 235 WQ 236 (765)
T ss_pred Cc
Confidence 54
No 480
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=69.57 E-value=11 Score=19.52 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.3
Q ss_pred CcEEEEecCCCeEEEEecCC
Q 023246 133 DEYVMSGSDCGHLFIWKKKG 152 (285)
Q Consensus 133 ~~~l~~~~~dg~v~vwd~~~ 152 (285)
+..++.++.||.++.+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 55788888899999999764
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.52 E-value=78 Score=27.35 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-----cCceeeeeEEEecCCC-----
Q 023246 65 TGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPND----- 133 (285)
Q Consensus 65 ~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~----- 133 (285)
+.|+|.|+|++|++-. .|.|++++.... ......... ........+++ +|+-
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~----------------~~~~~~~l~~v~~~~ge~GLlglal-~PdF~~~~~ 95 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETG----------------EVKVVFTLPEIVNDAQHNGLLGLAL-HPDFMQEKG 95 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCC----------------ceeeeecCCceeccCCCCceeeEEE-CCCccccCC
Q ss_pred -cEEEEec----------CCCeEEEEecCCC-------ceEEEEe--cccccceEeEEcCCCCeEEEEecCC
Q 023246 134 -EYVMSGS----------DCGHLFIWKKKGG-------KLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEK 185 (285)
Q Consensus 134 -~~l~~~~----------~dg~v~vwd~~~~-------~~~~~~~--~h~~~v~~~~~~p~~~~l~t~~~d~ 185 (285)
++|.... ....|.-|.+... +.+..-. .....-..|+|.|++.+.++.+..+
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.41 E-value=74 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=25.0
Q ss_pred ccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
..|.+++..+..+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3489999999889999999999999999964
No 483
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.28 E-value=81 Score=26.72 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=59.7
Q ss_pred eEEEEEecCCCEEEEecCCcEEE-EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246 64 ITGLAYSNTSELLISYNDELVYL-FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 142 (285)
Q Consensus 64 v~~i~~s~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 142 (285)
...+..++++.+++.+..|.+.. ||-.. ......... ....+..+.+ .+++..++++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~-----------------~~W~~~~~~-~~~~l~~v~~-~~dg~l~l~g-~~ 300 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ-----------------PYWQPHNRA-SARRIQNMGW-RADGGLWLLT-RG 300 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC-----------------cceEEecCC-CccceeeeeE-cCCCCEEEEe-CC
Confidence 44556677888888877665443 33211 011212211 1233888887 7888877766 45
Q ss_pred CeEEEEecCCCc-----eEEEEec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246 143 GHLFIWKKKGGK-----LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194 (285)
Q Consensus 143 g~v~vwd~~~~~-----~~~~~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 194 (285)
|.+.. ....++ ....... ....+.++.+.+++..++ ++..|.+....-..
T Consensus 301 G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~G 357 (398)
T PLN00033 301 GGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDGG 357 (398)
T ss_pred ceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCCC
Confidence 65543 333343 2222221 123588899988776554 55578777665433
No 484
>PLN02193 nitrile-specifier protein
Probab=66.02 E-value=90 Score=27.12 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=33.1
Q ss_pred CCcEEEEecCCC-----eEEEEecCCCceEEEE-----ecccccceEeEEcCCCCeEEEEecC----CcEEEEcCCCCCC
Q 023246 132 NDEYVMSGSDCG-----HLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDF 197 (285)
Q Consensus 132 ~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~~ 197 (285)
++++.+.|+.++ .+..||+.+.+-...- ...+.....+.+ +++.++.++.+ ..+.+||+.+...
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 456666666543 4677887655422110 001111111222 46666666654 3588899877653
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.01 E-value=72 Score=26.06 Aligned_cols=116 Identities=14% Similarity=0.215 Sum_probs=65.4
Q ss_pred CcceEEEEEec-CCCEEEEecCCc------EEEEEcCCCCCCCCCCCCCcc---ccCCCCceEeecccCceeeeeEEEec
Q 023246 61 NIHITGLAYSN-TSELLISYNDEL------VYLFEKNMGLGPSPLSLSPED---LQKREEPQVYSGHRNSQTVKGVNFFG 130 (285)
Q Consensus 61 ~~~v~~i~~s~-~~~~l~s~~d~~------i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~ 130 (285)
-+.+..|.+.+ ++.+++.+.++. +..+++..... ....+.... +.... -..+...... .-++++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~~~~~D--~Egi~~-~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFPKNGLD--PEGIAV-P 93 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCCcCCCC--hhHeEE-e
Confidence 45678899995 555666677666 66666554210 000000000 00000 0001000101 457887 7
Q ss_pred CCCcEEEEecCC------CeEEEEecCCCceEEEEe---------------cccccceEeEEcCCCCeEEEEe
Q 023246 131 PNDEYVMSGSDC------GHLFIWKKKGGKLVRLMV---------------GDRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 131 ~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~---------------~h~~~v~~~~~~p~~~~l~t~~ 182 (285)
+++.++++--.+ ..|+.++.. |+.+..+. ..+....+|+++|+++.|+++.
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 888888887777 789999877 66544431 1235678999999999766654
No 486
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=65.99 E-value=1.4e+02 Score=29.26 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=82.6
Q ss_pred cEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccC-CCCCcceEEEEEecCCCEEEEecCCcEEE
Q 023246 17 NYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDELVYL 86 (285)
Q Consensus 17 ~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s~~d~~i~i 86 (285)
.+||+|.. .|.+.|+|+-.--. +.++|......+.+. ..-.++|..++=-. -+|+++...+|.|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVP----epgkP~t~~KlKel~~eE~KGtVsavceV~--G~l~~~~GqKI~v 1120 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVP----EPGKPFTKNKLKELYIEEQKGTVSAVCEVR--GHLLSSQGQKIIV 1120 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecC----CCCCCcccceeeeeehhhcccceEEEEEec--cEEEEccCcEEEE
Confidence 47777753 48899999753110 011223332333332 23456676664322 3677788889999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEEEecc--
Q 023246 87 FEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGD-- 162 (285)
Q Consensus 87 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h-- 162 (285)
|++.... ..+. .|- .-+ +.-... ..-.++++.|.--..|.+.-... ...+..+...
T Consensus 1121 ~~l~r~~---------------~ligVaFi--D~~--~yv~s~-~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1121 RKLDRDS---------------ELIGVAFI--DLP--LYVHSM-KVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE 1180 (1366)
T ss_pred EEeccCC---------------cceeeEEe--ccc--eeEEeh-hhhhhheehhhhhhceEEEEEccCceEEEEeecCCc
Confidence 9995441 1211 111 111 222222 23466777777767777665442 2233333221
Q ss_pred cccceEeEEcCCCCe--EEEEecCCcEEEEcCC
Q 023246 163 RHVVNQLEPHPHIPM--FATCGIEKTVKLWAPM 193 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~ 193 (285)
.-.+.++.|--+|.. ++.+..|+.|+++-..
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 235777888777664 8888899998887543
No 487
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=65.64 E-value=16 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcEEEEeeCCCcEEEEEcc
Q 023246 7 NAIVIDPRNPNYFAVGGSDEYARVYDIR 34 (285)
Q Consensus 7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~ 34 (285)
+.|.++|++..+.++....+.|++|...
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 5788999875556666678999999865
No 488
>PLN02153 epithiospecifier protein
Probab=63.83 E-value=81 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=14.4
Q ss_pred cEEEEeeCC-------CcEEEEEccCCcc
Q 023246 17 NYFAVGGSD-------EYARVYDIRKCHW 38 (285)
Q Consensus 17 ~~l~tg~~d-------g~v~iwd~~~~~~ 38 (285)
.+++.|+.+ ..+.+||+.+.+.
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 62 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTW 62 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEE
Confidence 677777753 2577788776643
No 489
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=63.57 E-value=74 Score=25.35 Aligned_cols=194 Identities=8% Similarity=0.001 Sum_probs=101.0
Q ss_pred EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEE
Q 023246 8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 87 (285)
Q Consensus 8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iw 87 (285)
.++-+||+ ..-+++...+.|--.|..+++.. ...-+.......|..-|+|..-++-....|.-.
T Consensus 66 dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 66 DVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred ccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCcceeEEe
Confidence 45556664 56666666666666666666521 111122334456667777765555332244445
Q ss_pred EcCCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-cc
Q 023246 88 EKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RH 164 (285)
Q Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~ 164 (285)
|-++. ...+|.. ...........| ++.|++-+++.. |.-=-.|-. ...+..+... ..
T Consensus 130 dpkt~-----------------evt~f~lp~~~a~~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~ 189 (353)
T COG4257 130 DPKTL-----------------EVTRFPLPLEHADANLETAVF-DPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGG 189 (353)
T ss_pred cCccc-----------------ceEEeecccccCCCcccceee-CCCccEEEeecc-ccceecCcc-cCceeeeccCCCC
Confidence 54433 2233321 111123677777 999998888763 111111211 2234444432 34
Q ss_pred cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCc--ccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246 165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237 (285)
Q Consensus 165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~ 237 (285)
..+.|+..|+|..-++.-.+..|-..|+..+....+.... ..-....|..+-.+..++-...+.++.+|-...
T Consensus 190 gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 190 GPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred CCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 5678888999998766555666777777555432222111 111222333344556666666677777765443
No 490
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=63.37 E-value=15 Score=17.28 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=11.0
Q ss_pred eEeEEcCCCCeEEEEecCCcEEE
Q 023246 167 NQLEPHPHIPMFATCGIEKTVKL 189 (285)
Q Consensus 167 ~~~~~~p~~~~l~t~~~d~~i~i 189 (285)
..++++++|+.+++=.....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 34555555555444444444443
No 491
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.08 E-value=90 Score=29.01 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=44.5
Q ss_pred eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec---ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
++...+| . +-++.++.+|.|.++...+......+.. |...|+++...-.+-+++.++.| .+++++.
T Consensus 628 Pvrsla~-~---ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfht 696 (925)
T KOG3522|consen 628 PVRSLAF-Q---EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHT 696 (925)
T ss_pred cccchhh-h---hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecc
Confidence 3677665 2 2356678899999999887766655554 34678888888777776666655 4444444
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=63.02 E-value=29 Score=31.62 Aligned_cols=67 Identities=9% Similarity=0.164 Sum_probs=43.0
Q ss_pred eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 192 (285)
Q Consensus 122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 192 (285)
.+.++.- +|.++.++.+..||.|.+|+........... ...+-..+.|...| |+++..|..+.-|.-
T Consensus 16 ~~~aiqs-hp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 16 FTTAIQS-HPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred eeeeeee-cCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 3677774 7999999999999999999976443322111 12334445554433 566666666666653
No 493
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.64 E-value=44 Score=28.58 Aligned_cols=159 Identities=9% Similarity=0.062 Sum_probs=81.7
Q ss_pred CcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCc--eeee-eEEEecCCCcEE
Q 023246 61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNS--QTVK-GVNFFGPNDEYV 136 (285)
Q Consensus 61 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~-~~~~~~~~~~~l 136 (285)
...|..+-..|+|+.+..-+..++.++++.+.. -..+.+- ...+. ..|+ ++.. -..+..+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~---------------l~~rkl~~dspg~~~~~Vte~l~l-L~Gg~SL 283 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRS---------------LQIRKLVDDSPGDSRHQVTEQLYL-LSGGFSL 283 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccc---------------cchhhhhhcCCCchHHHHHHHHHH-HhCceeE
Confidence 345667788999997777656888888887541 0111111 10110 0122 1111 2346678
Q ss_pred EEecCCCeEEEE-ecCC-Cce----EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC--Ccccce
Q 023246 137 MSGSDCGHLFIW-KKKG-GKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD--NAEKIM 208 (285)
Q Consensus 137 ~~~~~dg~v~vw-d~~~-~~~----~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~~ 208 (285)
+.++.||.|.-| |.+. +++ ++.++-...++..+.-..+.+-+++-...|++..+.....+..-+.. .....+
T Consensus 284 Lv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~ 363 (733)
T COG4590 284 LVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLV 363 (733)
T ss_pred EEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCccee
Confidence 888899998876 5443 322 22222222344444333334447778888888877654444211111 111122
Q ss_pred eeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246 209 KANKQGREDHSRITLTPDVIMHVLRLQRRQT 239 (285)
Q Consensus 209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~ 239 (285)
.. ++...+++ .-..|.++++.+.+++.
T Consensus 364 ~~---Sp~~~~Ll-~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AM---SPNQAYLL-SEDQGKIRLAQLENRNP 390 (733)
T ss_pred ee---Ccccchhe-eecCCceEEEEecCCCC
Confidence 22 22222332 34458889998887654
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.70 E-value=39 Score=21.52 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe
Q 023246 139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 182 (285)
Q Consensus 139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~ 182 (285)
+..+|.+..||..+++..-.+.+ -...+.|+++|++..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 44578999999998765444443 35678899999999866553
No 495
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=59.48 E-value=1.6e+02 Score=27.74 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=23.3
Q ss_pred CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc
Q 023246 2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 37 (285)
Q Consensus 2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~ 37 (285)
....|.+++.+.+. .+++ ..+|.|.-|-+....
T Consensus 227 ~gh~~~qisvs~~H-slvL--T~~g~Vys~GlN~~h 259 (1267)
T KOG0783|consen 227 IGHKVIQISVSHTH-SLVL--TKFGSVYSWGLNGSH 259 (1267)
T ss_pred cccceEEEEeecce-eEEE--eecceEEEeecCccc
Confidence 34567888888864 4444 468999999987543
No 496
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.19 E-value=43 Score=21.18 Aligned_cols=49 Identities=10% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCC
Q 023246 142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM 193 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~ 193 (285)
-+.|..||..+ ......--...+.+.++|++++|..++ ..+.|++|...
T Consensus 35 ~~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35566666532 222222234677899999999855554 67899998754
No 497
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=58.70 E-value=1.1e+02 Score=28.95 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEE-EecCC-----cEEEEcCCCC
Q 023246 142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT-CGIEK-----TVKLWAPMPT 195 (285)
Q Consensus 142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t-~~~d~-----~i~iwd~~~~ 195 (285)
.+.|.+-|.........-..+..+|.+-+|+|||+.|+- .+.++ .|.+-++++.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 358888888754444331346788999999999999887 44444 4788887554
No 498
>PLN02153 epithiospecifier protein
Probab=58.65 E-value=1e+02 Score=25.29 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=13.5
Q ss_pred cEEEEeeCC-----CcEEEEEccCCc
Q 023246 17 NYFAVGGSD-----EYARVYDIRKCH 37 (285)
Q Consensus 17 ~~l~tg~~d-----g~v~iwd~~~~~ 37 (285)
.+++.|+.+ ..+.+||+.+.+
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCE
Confidence 566777653 346778877654
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.11 E-value=22 Score=32.31 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=27.3
Q ss_pred cccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246 163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 195 (285)
Q Consensus 163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 195 (285)
...++++.-+|.++.++.+..||.|++|+....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 345777888899999999999999999986443
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=57.60 E-value=73 Score=25.02 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=37.9
Q ss_pred cEEEEecCCCeEEEEecCCCceEEEEecccccceEeE----EcCCCCeEEEEecCCcEEEE
Q 023246 134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE----PHPHIPMFATCGIEKTVKLW 190 (285)
Q Consensus 134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~----~~p~~~~l~t~~~d~~i~iw 190 (285)
..++.|++.|.|++.|...-..+..+.-..-++ .+. |..-.-.++.++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 478999999999999998777777766443333 222 21112237778889988753
Done!