Query 023247
Match_columns 285
No_of_seqs 194 out of 1705
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 1.7E-30 5.8E-35 216.2 17.2 176 41-255 4-180 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.2E-27 4.3E-32 187.8 11.8 130 34-167 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 3.5E-23 1.2E-27 164.3 4.0 126 41-168 5-139 (143)
4 2rpb_A Hypothetical membrane p 99.9 9E-22 3.1E-26 150.1 9.6 109 46-156 4-113 (113)
5 2zuo_A MVP, major vault protei 99.1 6.3E-08 2.2E-12 93.5 26.3 153 7-162 459-655 (861)
6 3v6i_B V-type ATP synthase, su 85.7 5.7 0.0002 28.2 8.0 29 174-202 21-49 (105)
7 3v6i_A V-type ATP synthase sub 80.6 19 0.00066 28.4 12.3 30 170-199 14-43 (187)
8 2k6i_A Uncharacterized protein 80.3 2.1 7.1E-05 27.1 3.6 22 178-199 24-45 (56)
9 2kk7_A V-type ATP synthase sub 77.1 5.4 0.00019 24.8 4.9 28 178-205 19-46 (52)
10 3v6i_A V-type ATP synthase sub 77.1 18 0.00063 28.5 9.5 27 237-268 102-128 (187)
11 3v6i_B V-type ATP synthase, su 76.0 18 0.00063 25.6 7.9 30 165-194 23-52 (105)
12 2xzm_4 40S ribosomal protein S 72.3 6.7 0.00023 33.1 5.8 89 59-147 129-222 (265)
13 4efa_G V-type proton ATPase su 72.2 27 0.00091 25.7 8.7 41 159-199 10-50 (119)
14 2k6i_A Uncharacterized protein 69.4 4.4 0.00015 25.6 3.1 28 166-193 23-50 (56)
15 2zuo_A MVP, major vault protei 68.9 33 0.0011 33.7 10.4 14 8-21 487-500 (861)
16 3u5c_B RP10A, 40S ribosomal pr 65.4 6.5 0.00022 33.0 4.3 89 59-147 126-216 (255)
17 4efa_G V-type proton ATPase su 59.9 37 0.0013 24.9 7.1 43 173-215 13-55 (119)
18 3bk6_A PH stomatin; archaea, t 55.4 16 0.00055 28.8 4.9 25 200-224 128-152 (188)
19 3j20_A 30S ribosomal protein S 55.1 58 0.002 26.2 8.1 81 59-148 108-190 (198)
20 2b5u_A Colicin E3; high resolu 42.3 1.7E+02 0.0058 26.9 9.7 33 139-171 278-310 (551)
21 2acm_B Mucin-1; auto-catalytic 37.8 47 0.0016 20.7 3.8 22 135-156 31-52 (55)
22 4efa_E V-type proton ATPase su 32.0 2E+02 0.0069 23.2 9.7 10 154-163 10-19 (233)
23 1l2p_A ATP synthase B chain; a 20.4 1.6E+02 0.0055 18.1 7.9 11 181-191 10-20 (61)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.7e-30 Score=216.18 Aligned_cols=176 Identities=24% Similarity=0.293 Sum_probs=139.5
Q ss_pred eeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 023247 41 SQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE 119 (285)
Q Consensus 41 ~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~ 119 (285)
+++ ..+|+|.++++++. .++|+|+++|.|+++++|||.|| .++++.+.|+...+.+++++++|+++|+++++++++
T Consensus 4 ~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~ 80 (188)
T 3bk6_A 4 EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS 80 (188)
T ss_dssp EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence 566 68999999999987 89999999999999999999994 577899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023247 120 QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 120 ~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
+|++|+..+++.|++.+++|||.|.+|.|++|.||+++.++|++++.|++++++.+.+|||+ +++.++.
T Consensus 81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege-----------~~a~~~~ 149 (188)
T 3bk6_A 81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAE-----------RQAAEKL 149 (188)
T ss_dssp CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHH
Confidence 99999999999999999999999999999999999999999999888887766655444444 4433333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCC
Q 023247 200 GLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKT 255 (285)
Q Consensus 200 Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~ 255 (285)
|+| .+.++.+ +.++.+||||++.++++++++
T Consensus 150 a~a---------------~~~~~~~----------~~~l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 150 REA---------------AEIISEH----------PMALQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp HHH---------------HHHHHHC----------TTHHHHHHTTC----------
T ss_pred HHH---------------HHHHHhC----------HHHHHHHHHHHHHHHhcCCCC
Confidence 222 1122211 246778999999999875443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.95 E-value=1.2e-27 Score=187.75 Aligned_cols=130 Identities=22% Similarity=0.304 Sum_probs=105.6
Q ss_pred eecCccceeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCC
Q 023247 34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL 112 (285)
Q Consensus 34 ~~~P~i~~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~ 112 (285)
+++||+ +++ .++|+|.++++++. +++|+|++.+.|++.++|||.| +.++++++.|++..+..++++++|+++|++
T Consensus 3 l~~P~i-d~v-~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPST-DSA-AKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCce-eEE-EEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 778997 677 58999999999987 8999999999999999999999 578999999999999999999999999999
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 023247 113 DLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167 (285)
Q Consensus 113 ~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A 167 (285)
++++++++|++|+..+++.+++.+++|||+|.+|.|+++.||+++.+||.++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887654
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=3.5e-23 Score=164.31 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=109.1
Q ss_pred eeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccc--------cChHHHHHHHHHHHHHHHcCC
Q 023247 41 SQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKL--------SNTRSQIQAYVFDVIRASVPK 111 (285)
Q Consensus 41 ~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~--------~~~~~~l~~~~~~~lr~vi~~ 111 (285)
+++ .++|+|.++++++. .++|+|++++.|++.++|||.|+ +.++.+.+ ......+.++++++||+++|+
T Consensus 5 ~~v-~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd-~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 5 SSG-QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCC-CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCC-SSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEE-EEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCC-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 566 48999999999987 89999999999999999999842 22222211 123456888999999999999
Q ss_pred CCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 023247 112 LDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 168 (285)
Q Consensus 112 ~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~ 168 (285)
+++++++++|++|.+.+++.+++.+++|||+|.+|+|++|.||+++.+||++++.|+
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999876654
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.86 E-value=9e-22 Score=150.05 Aligned_cols=109 Identities=30% Similarity=0.437 Sum_probs=104.3
Q ss_pred eeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHH
Q 023247 46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124 (285)
Q Consensus 46 ~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i 124 (285)
.+|+|.+.++++. .++|+|+++|.+++.++|||.|| .++++++.|++..|.+++++++|+++|++++++++++|++|
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDP--VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCT--TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 6899999999987 99999999999999999999994 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEEeecCCCHH
Q 023247 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 125 ~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
++.+++.+++.+++|||+|.+|.|++|.||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=99.09 E-value=6.3e-08 Score=93.49 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=105.3
Q ss_pred EEEecCCeEEEEeec--CeeeeeeCCcceeecCccceeeEEeeeee---------EEE--eecC-------CCcccCCCc
Q 023247 7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLR---------VQQ--LDVR-------CETKTKDNV 66 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~--Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~---------~~~--~~~~-------~~v~T~D~~ 66 (285)
.|.||.+.+.-++-+ |+..-++||-+.+.-|- + .. ..+++. ..+ +.+. ..|-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E-~f-tvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-E-QF-TVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-C-EE-CCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-c-cE-EEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 367998888888875 55555789988777665 2 22 223321 111 1222 168999999
Q ss_pred EEEEEEEEEEEEc--cc---hhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHH-HHHHH---------
Q 023247 67 FVNVVASVQYRAL--AE---KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK-AVEEE--------- 131 (285)
Q Consensus 67 ~v~v~~~v~yrI~--~~---~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~-~i~~~--------- 131 (285)
.+.+..+++|+.. |+ .....+|.+.|+-.-+-..+.+.+|..+++.+++++..+-..|-. .+...
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999874 32 223578999999999999999999999999999999887544422 22111
Q ss_pred ------HH--HHhhccCeEEEEEEEeecCC-CHHHHHHHH
Q 023247 132 ------LE--KAMSHYGYEIVQTLIVDIEP-DEHVKRAMN 162 (285)
Q Consensus 132 ------l~--~~l~~~Gi~v~~v~I~~i~~-p~~v~~a~~ 162 (285)
.+ -.+...|+.|.+|.|+++.| ++...+++.
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 00 12455699999999999998 444444444
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=85.68 E-value=5.7 Score=28.23 Aligned_cols=29 Identities=31% Similarity=0.244 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q 023247 174 ANEKAEAEKILQIKRAEGEAESKYLAGLG 202 (285)
Q Consensus 174 ~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea 202 (285)
.+..|..++...+..|++++.+++.+|+.
T Consensus 21 ~lE~Ar~eA~~~v~~AEAeA~ril~eAe~ 49 (105)
T 3v6i_B 21 RLEAAKKEAEERVKRAEAEAKALLEEAEA 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555444444443
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=80.64 E-value=19 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.101 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023247 170 LRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 170 ~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
+.+.-+.+|+.++...+..|+.+|++....
T Consensus 14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~ 43 (187)
T 3v6i_A 14 EIQALLQEAEAKAEAVKREAEEKAKALLQA 43 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555444444444444433
No 8
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=80.31 E-value=2.1 Score=27.11 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHh
Q 023247 178 AEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
||.++...+..|+.+++..+..
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~e 45 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAE 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444344444444333333
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=77.12 E-value=5.4 Score=24.80 Aligned_cols=28 Identities=29% Similarity=0.111 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 023247 178 AEAEKILQIKRAEGEAESKYLAGLGIAR 205 (285)
Q Consensus 178 Ae~~~~~~~~~Aeaeaea~~~~Aea~a~ 205 (285)
|+.++...+..|+.+++..+..|+.+|+
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444443
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=77.11 E-value=18 Score=28.54 Aligned_cols=27 Identities=7% Similarity=0.281 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCCCchh
Q 023247 237 VLVTQYFDTMKEIGASSKTNSVFIPHGPGAVK 268 (285)
Q Consensus 237 ~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~ 268 (285)
+|...-.+++..+ ++..+++ .++.+..
T Consensus 102 ~L~~Li~ea~~~l---~~~~~vv--~~~~D~~ 128 (187)
T 3v6i_A 102 VVRKLALEALEAL---PGAKALV--ANPEDLP 128 (187)
T ss_dssp HHHHHHHHHHHHC---TTCCEEE--ECTTTHH
T ss_pred HHHHHHHHHHHHc---CCCCeEE--ECHHHHH
Confidence 3334444444444 2344544 3445544
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=75.96 E-value=18 Score=25.62 Aligned_cols=30 Identities=30% Similarity=0.283 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023247 165 NAAARLRLAANEKAEAEKILQIKRAEGEAE 194 (285)
Q Consensus 165 ~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeae 194 (285)
..|+++.+..+.+||+++...+..|+..+.
T Consensus 23 E~Ar~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 23 EAAKKEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777788888888776655555443
No 12
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=72.32 E-value=6.7 Score=33.08 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=56.1
Q ss_pred CcccCCCcEEEEEEEEEEEEcc---chhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHH
Q 023247 59 ETKTKDNVFVNVVASVQYRALA---EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELE 133 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~---~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~~l~ 133 (285)
+|.|.||..+.|-+...-+=.. ....+..|.-.+....|+......+...++..++++++.. -+.|..+|....+
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k 208 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK 208 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence 6899999999887775443322 1122333433444567899999999999999999999875 4555555555444
Q ss_pred HHhhccCeEEEEEE
Q 023247 134 KAMSHYGYEIVQTL 147 (285)
Q Consensus 134 ~~l~~~Gi~v~~v~ 147 (285)
...--..+.|..|.
T Consensus 209 ~IyPL~~V~IrKvK 222 (265)
T 2xzm_4 209 NIFPLQNITIRKVK 222 (265)
T ss_dssp TTCCEEEEEEEEEE
T ss_pred hccccceEEEEEEE
Confidence 33222234444444
No 13
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=72.21 E-value=27 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023247 159 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 199 (285)
Q Consensus 159 ~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~ 199 (285)
.-|..-+.|++++...+.+|+.++...+..|+.+|++-+..
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777888877778888888888888777777666543
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=69.41 E-value=4.4 Score=25.60 Aligned_cols=28 Identities=21% Similarity=0.035 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023247 166 AAARLRLAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~Aeaea 193 (285)
.|++.+...+.+|+.+++..+..|..++
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 15
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=68.87 E-value=33 Score=33.71 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=8.7
Q ss_pred EEecCCeEEEEeec
Q 023247 8 IQVDQSTVAIKETF 21 (285)
Q Consensus 8 ~~V~~ge~~Vv~~~ 21 (285)
+..+|.|.-.+..+
T Consensus 487 v~L~PdE~ftvlsL 500 (861)
T 2zuo_A 487 VTLDPEEQFTVLSL 500 (861)
T ss_dssp EECCSSCEECCEEE
T ss_pred EEECCCccEEEEEe
Confidence 56667776666553
No 16
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=65.41 E-value=6.5 Score=33.05 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHHh
Q 023247 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAM 136 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~~l~~~l 136 (285)
++.|.||..+.+-+...-+-.+....+..|.-.+....|+......+...++..++.+++.. -+.|+.+|....+...
T Consensus 126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~Iy 205 (255)
T 3u5c_B 126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIF 205 (255)
T ss_dssp EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTC
T ss_pred EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhcccc
Confidence 78999999998887755332221122233333444568999999999999999999999976 4777777776665443
Q ss_pred hccCeEEEEEE
Q 023247 137 SHYGYEIVQTL 147 (285)
Q Consensus 137 ~~~Gi~v~~v~ 147 (285)
--.-+.|..+.
T Consensus 206 PL~~V~IrKvK 216 (255)
T 3u5c_B 206 PLQNIHVRKVK 216 (255)
T ss_dssp CCEEEECCCEE
T ss_pred ccceEEEEEEE
Confidence 32234444443
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=59.88 E-value=37 Score=24.91 Aligned_cols=43 Identities=16% Similarity=-0.019 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 023247 173 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR 215 (285)
Q Consensus 173 a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a 215 (285)
.....||.++...+..|+......+..|+.+|+..+..-..+.
T Consensus 13 QqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qk 55 (119)
T 4efa_G 13 ATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQK 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777776666554444443
No 18
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=55.38 E-value=16 Score=28.82 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 023247 200 GLGIARQRQAIVDGLRDSVLAFSEN 224 (285)
Q Consensus 200 Aea~a~a~~~~a~a~a~a~~~~~~a 224 (285)
|+.++++..+.|+|++++.+.++++
T Consensus 128 Aere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 128 AERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334445566666666666666554
No 19
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.12 E-value=58 Score=26.18 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=57.1
Q ss_pred CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHhh--HHHHHHHHHHHHHHHh
Q 023247 59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAM 136 (285)
Q Consensus 59 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~~--R~~i~~~i~~~l~~~l 136 (285)
++.|+||..+.+-+...-+ .. .-.+....|+......+...++..++++++.. -+.++.+|....+...
T Consensus 108 dVkT~DGy~lRvf~i~fT~-kr--------a~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~Iy 178 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAM-RR--------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIY 178 (198)
T ss_dssp EEECTTSCEEEEEEEEEEC-SS--------CCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHS
T ss_pred EEEecCCCEEEEEEEEEEe-cc--------ccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccc
Confidence 6899999988877764311 10 11234467888899999999999999999986 4788888888777654
Q ss_pred hccCeEEEEEEE
Q 023247 137 SHYGYEIVQTLI 148 (285)
Q Consensus 137 ~~~Gi~v~~v~I 148 (285)
--.-++|..+.+
T Consensus 179 Pl~~V~IrKvKv 190 (198)
T 3j20_A 179 PLRKAEIRKIKV 190 (198)
T ss_dssp CEEEEEEEEEEE
T ss_pred ccceEEEEEEEE
Confidence 434455555543
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.30 E-value=1.7e+02 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=27.0
Q ss_pred cCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 023247 139 YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 171 (285)
Q Consensus 139 ~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~ 171 (285)
-|++-.-|.+.+|..|.++.+-.++...++|+-
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 388888999999999999988888766666664
No 21
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=37.80 E-value=47 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=15.1
Q ss_pred HhhccCeEEEEEEEeecCCCHH
Q 023247 135 AMSHYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 135 ~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
...+|.+.|.+|.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 3458999999999999999854
No 22
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=32.04 E-value=2e+02 Score=23.20 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.5
Q ss_pred CHHHHHHHHH
Q 023247 154 DEHVKRAMNE 163 (285)
Q Consensus 154 p~~v~~a~~~ 163 (285)
|+++..-+++
T Consensus 10 ~~~v~~~i~~ 19 (233)
T 4efa_E 10 PNQVNDELNK 19 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556655554
No 23
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=20.37 E-value=1.6e+02 Score=18.11 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.0
Q ss_pred HHHHHHHHHhh
Q 023247 181 EKILQIKRAEG 191 (285)
Q Consensus 181 ~~~~~~~~Aea 191 (285)
++...+..|+.
T Consensus 10 ea~~Ii~~A~~ 20 (61)
T 1l2p_A 10 EAQVIIEQANK 20 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!