BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023248
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 118/160 (73%), Gaps = 12/160 (7%)
Query: 12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct: 24 DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83
Query: 72 QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQ 131
QK+RLG+Q +++G KE + S+ N + ++ M S +E Q
Sbjct: 84 QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE------------MQ 131
Query: 132 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 171
EVQ+RL EQLEVQ LQ+RIEAQGKY+Q+IL++A ++L+
Sbjct: 132 MEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA 171
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 18/150 (12%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ--- 78
K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+ GLT+YH+KSHLQKYR +
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290
Query: 79 QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGYVPISEALKCQAEVQQRL 138
+T G Q K+ TS+ + + + V I++AL+ Q EVQ+RL
Sbjct: 291 ETSEVTGEPQEKK---------------MTSIEDIKSLDMKTSVEITQALRLQMEVQKRL 335
Query: 139 QEQLEVQERLQMRIEAQGKYLQAILQKAQK 168
EQLE+Q LQ++IE QG+YLQ + +K QK
Sbjct: 336 HEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
R P PRLRWT +LH FV AV LGG KATPK VL++M +KGLT+ H+KSHLQ YR
Sbjct: 19 VRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
PR+RWT+ LH RFV AV LGG ++ATPKSVL LM +K LTL H+KSHLQ YR + T +
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQT 80
PR+RWT LH RFV AV LGG ++ATPKSVL LM +K LTL H+KSHLQ YR + T
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
PR+RWT+ LH RFV AV LGG ++ATPKSVL LM +K LTL H+KSHLQ YR + T +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384
Query: 83 QHGADQHKENNGGS 96
A +GGS
Sbjct: 385 P--AASSGPADGGS 396
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%)
Query: 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
PR+RWT+ LH FV AV LGG ++ATPKSVL LM +K LTL H+KSHLQ YR
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
PR+RWT LH FV AV LGG ++ATPKSVL LM ++ LTL H+KSHLQ YR + T +
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
KPR+ W+ +LH +FV AV +LG DKA PK +L +M + GLT ++ SHLQKYR+ R
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLGV-DKAVPKKILEMMNVPGLTRENVASHLQKYRI--YLR 272
Query: 82 RQHGADQHKEN 92
R G QH+ N
Sbjct: 273 RLGGVSQHQGN 283
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
KPR+ W+ +LH +FV AV +LG +KA PK +L LM + GLT ++ SHLQKYR+ R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLGV-EKAVPKKILELMNVPGLTRENVASHLQKYRI--YLR 293
Query: 82 RQHGADQHKEN 92
R G QH+ N
Sbjct: 294 RLGGVSQHQGN 304
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
KPR+ W+ +LH +FV AV +LG DKA PK +L LM ++GLT ++ SHLQKYRL
Sbjct: 194 KPRVVWSQELHQKFVSAVQQLGL-DKAVPKKILDLMSIEGLTRENVASHLQKYRL 247
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
K R+ W+ +LH +FV+AV KLG DKA PK +L LM + GL+ ++ SHLQK+RL
Sbjct: 200 KSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRL 253
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
KP++ WT +LH +FV AV +LG DKA P +L +M +K LT +++ SHLQKYR +
Sbjct: 147 KPKVDWTPELHRKFVQAVEQLGV-DKAVPSRILEIMNVKSLTRHNVASHLQKYR----SH 201
Query: 82 RQH 84
R+H
Sbjct: 202 RKH 204
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
K ++ WT +LH RFV AV +LG DKA P +L LMG++ LT +++ SHLQKYR +
Sbjct: 215 KVKVDWTPELHRRFVQAVEQLGI-DKAVPSRILELMGIECLTRHNIASHLQKYR----SH 269
Query: 82 RQH 84
R+H
Sbjct: 270 RKH 272
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM----GLKGLTLYHLKSHLQKYR 75
KPR++WT +LH +F AV K+G +KA PK++L+ M ++GLT ++ SHLQKYR
Sbjct: 211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR 268
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR------ 75
K ++ WT +LH RFV+AV +LG DKA P +L LMG+ LT +++ SHLQKYR
Sbjct: 153 KVKVDWTPELHRRFVEAVEQLGV-DKAVPSRILELMGVHCLTRHNVASHLQKYRSHRKHL 211
Query: 76 ------LGQQTRRQH--GADQHKENNGGSSFVNFYNGSLATSMT 111
TR++H G D NG + NG LA + T
Sbjct: 212 LAREAEAANWTRKRHIYGVDTGANLNGRTK-----NGWLAPAPT 250
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 27 WTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQH 84
WT +LH RFV AV +LG DKA P +L +MG+ LT +++ SHLQKYR + R+H
Sbjct: 185 WTPELHRRFVQAVEQLGI-DKAVPSRILEIMGIDSLTRHNIASHLQKYR----SHRKH 237
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ-- 79
K RL WT LH +F+ AV LG DKA PK +L +M +K LT + SHLQKYR+ +
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGE-DKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKS 256
Query: 80 --TRRQHGA 86
T +HGA
Sbjct: 257 IPTTSKHGA 265
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ-- 79
K RL WT LH +F+ AV LG DKA PK +L +M +K LT + SHLQKYR+ +
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGE-DKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKS 256
Query: 80 --TRRQHGA 86
T +HGA
Sbjct: 257 IPTTSKHGA 265
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 10/95 (10%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSV---LRLMGLKGLTLYHLKSHLQKYRLGQ 78
KPR+ WT +LH +F++A+ +GG +KA PK + L+ M ++G+T ++ SHLQK+R+
Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRINL 274
Query: 79 QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSS 113
+ ++ Q + NG ++ G+LA S+ S
Sbjct: 275 E---ENQIPQQTQGNGWATAY----GTLAPSLQGS 302
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
K R+ WT +LH +FV AV +LG +KA PK +L LM ++ LT ++ SHLQK+RL
Sbjct: 195 KQRVVWTVELHKKFVAAVNQLGY-EKAMPKKILDLMNVEKLTRENVASHLQKFRL 248
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77
KPR+ WT +LH++F+ AV LG ++A PK +L LM + LT ++ SHLQK+R+
Sbjct: 183 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 237
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
R+ W+ +LH +FV+AV ++G KA PK +L LM + LT ++ SHLQKYRL
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 10 PYENGVMMTRDPKPR-LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLK 68
P ++G M++ K + ++WT LHD F+ A+ +G DKA PK +L M + LT ++
Sbjct: 209 PSDDGESMSQPAKKKKIQWTDSLHDLFLQAIRHIGL-DKAVPKKILAFMSVPYLTRENVA 267
Query: 69 SHLQKYRL 76
SHLQKYR+
Sbjct: 268 SHLQKYRI 275
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 10 PYENGVMMTRDPKPR-LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLK 68
P ++G +++ PK + + WT L D F+ A+ +G DK PK +L +M + LT ++
Sbjct: 212 PSDDGESLSQPPKKKKIWWTNPLQDLFLQAIQHIGY-DKVVPKKILAIMNVPYLTRENVA 270
Query: 69 SHLQKYRL 76
SHLQKYRL
Sbjct: 271 SHLQKYRL 278
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
++ WT +LH +FV AV +LG D+A P +L LM + LT +++ SHLQK+R
Sbjct: 298 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVGTLTRHNVASHLQKFR 348
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 27 WTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
W ++ H +F+ A++ LG D PKS+L +M LT + SHLQKY+
Sbjct: 227 WNSERHMKFIAAISILGEED-FRPKSILEIMNDPNLTHRQVGSHLQKYK 274
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
K R+ W +LH F++AV LG ++A PK +L +M + ++ ++ SHLQ
Sbjct: 223 KRRVVWDEELHQNFLNAVDFLGL-ERAVPKKILDVMKVDYISRENVASHLQ 272
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 27 WTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGA 86
WT + H RF++A++K G D KS+ + + + T +++H QKY L R
Sbjct: 175 WTPEEHSRFIEALSKYGHKDV---KSISQYVSTRNPT--QVRTHAQKYFLRIDRERGRKL 229
Query: 87 DQHKENNGGS 96
+ + NGG+
Sbjct: 230 ESKESINGGA 239
>sp|Q5RAJ5|STK36_PONAB Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2
SV=1
Length = 1315
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 16 MMTRDPKPRLRWTADLHDRF----VDAVTKLGGPDKATPKSVL---RLMGLKGLTLYHLK 68
++T+DP+ RL W L+ F V +T+ GPD TP + L LK + L
Sbjct: 234 LLTKDPRQRLSWPDLLYHPFIAGHVTIITETAGPDLGTPFTSRLPPELQVLKDKQAHRLS 293
Query: 69 SHLQKYRLGQQT--RRQHGADQHKENNGGSSF 98
+ R+ Q R A Q K N G +
Sbjct: 294 PKGNQSRILTQAYERMAEEAMQKKHQNTGPAL 325
>sp|P03049|RMNT_BPP22 Regulatory protein mnt OS=Enterobacteria phage P22 GN=mnt PE=1 SV=3
Length = 83
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 142 LEVQERLQMRIEAQGKYLQA-ILQKAQKSLSVDSSVTGNVN 181
+EV+E+L+ R EA G+ + + +LQ Q +LS S VTG N
Sbjct: 14 MEVREKLKFRAEANGRSMNSELLQIVQDALSKPSPVTGYRN 54
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 28/76 (36%)
Query: 12 ENGVMMTRDP----KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG--------- 58
E+ V+ TR P K R RWT + H+RF++A LRL G
Sbjct: 8 EDLVIKTRKPYTITKQRERWTEEEHNRFIEA---------------LRLYGRAWQKIEEH 52
Query: 59 LKGLTLYHLKSHLQKY 74
+ T ++SH QK+
Sbjct: 53 VATKTAVQIRSHAQKF 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,032,766
Number of Sequences: 539616
Number of extensions: 4448616
Number of successful extensions: 13754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 13420
Number of HSP's gapped (non-prelim): 299
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)