Query 023248
Match_columns 285
No_of_seqs 180 out of 388
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 02:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 6.9E-26 1.5E-30 164.6 6.8 51 121-171 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 9.3E-24 2E-28 203.7 6.7 62 17-79 230-291 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 4.1E-22 8.9E-27 146.7 6.4 56 22-77 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.4 0.0004 8.8E-09 48.2 5.7 48 24-75 1-48 (48)
5 smart00426 TEA TEA domain. 90.3 0.31 6.8E-06 38.0 3.2 18 26-43 5-22 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 90.2 0.58 1.3E-05 34.7 4.4 34 136-170 6-39 (51)
7 PF15235 GRIN_C: G protein-reg 70.5 3.5 7.6E-05 36.1 2.4 29 143-171 71-99 (137)
8 PF12776 Myb_DNA-bind_3: Myb/S 65.8 8.5 0.00018 29.3 3.5 51 26-76 1-63 (96)
9 cd00167 SANT 'SWI3, ADA2, N-Co 63.6 31 0.00068 21.7 5.4 43 26-73 1-43 (45)
10 smart00717 SANT SANT SWI3, AD 59.9 42 0.00092 21.3 5.6 44 25-73 2-45 (49)
11 PF00435 Spectrin: Spectrin re 58.5 63 0.0014 23.3 6.9 55 144-203 42-96 (105)
12 smart00501 BRIGHT BRIGHT, ARID 55.5 12 0.00025 29.2 2.7 46 30-76 33-85 (93)
13 TIGR02894 DNA_bind_RsfA transc 50.0 89 0.0019 28.2 7.6 54 17-76 41-94 (161)
14 PF01519 DUF16: Protein of unk 47.4 41 0.00088 28.3 4.8 27 141-167 65-91 (102)
15 PF07384 DUF1497: Protein of u 36.8 32 0.00069 26.0 2.3 22 25-46 36-57 (59)
16 cd08783 Death_MALT1 Death doma 25.4 1.2E+02 0.0027 25.3 4.2 48 22-73 35-83 (97)
17 cd07646 I-BAR_IMD_IRSp53 Inver 25.1 2.8E+02 0.006 26.4 7.0 67 122-193 66-141 (232)
18 PF13779 DUF4175: Domain of un 24.4 3.4E+02 0.0075 29.9 8.4 49 123-171 466-521 (820)
19 KOG3841 TEF-1 and related tran 22.8 1.1E+02 0.0024 31.4 4.1 53 24-78 76-145 (455)
20 PF08127 Propeptide_C1: Peptid 22.6 46 0.001 23.3 1.0 36 31-73 1-36 (41)
21 cd07645 I-BAR_IMD_BAIAP2L1 Inv 22.4 3.7E+02 0.008 25.6 7.2 67 122-193 64-139 (226)
22 PF14075 UBN_AB: Ubinuclein co 20.5 95 0.0021 28.6 2.9 24 17-40 145-168 (214)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=6.9e-26 Score=164.64 Aligned_cols=51 Identities=71% Similarity=0.912 Sum_probs=49.0
Q ss_pred CcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023248 121 YVPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 171 (285)
Q Consensus 121 ~~~i~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq~~L~ 171 (285)
+++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999875
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=9.3e-24 Score=203.71 Aligned_cols=62 Identities=45% Similarity=0.753 Sum_probs=58.3
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~ 79 (285)
....+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 344678999999999999999999998 79999999999999999999999999999999876
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=4.1e-22 Score=146.68 Aligned_cols=56 Identities=66% Similarity=1.042 Sum_probs=54.3
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
|+|++||+|+|.+|++||+.+|+.+.||||.|+++|++++||..||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.44 E-value=0.0004 Score=48.20 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=41.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 75 (285)
|-.||++=+..|++||.++|. -.-+.|...|+ ++-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 26899999999 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.33 E-value=0.31 Score=38.01 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=16.6
Q ss_pred ccChHHHHHHHHHHHHhC
Q 023248 26 RWTADLHDRFVDAVTKLG 43 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LG 43 (285)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999999875
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=90.24 E-value=0.58 Score=34.71 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 023248 136 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL 170 (285)
Q Consensus 136 rrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq~~L 170 (285)
--|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 45778999999999888888 66776666555544
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=70.47 E-value=3.5 Score=36.10 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023248 143 EVQERLQMRIEAQGKYLQAILQKAQKSLS 171 (285)
Q Consensus 143 EVQR~LQlRIEAQGKYLqsiLEkaq~~L~ 171 (285)
-||+||+++|+.|++.+..--.++.++.+
T Consensus 71 AIQkHLE~qi~e~~~q~~~~~~~~~~~~s 99 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAPQKKQARKSPS 99 (137)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccc
Confidence 47899999999999987665444444433
No 8
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=65.79 E-value=8.5 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=33.6
Q ss_pred ccChHHHHHHHHHHHHh---CCC-CCCChh-----HHHhhhCC---CCCCHHHHHHhhhhhhh
Q 023248 26 RWTADLHDRFVDAVTKL---GGP-DKATPK-----SVLRLMGL---KGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~L---GG~-~kAtPK-----~IL~lM~v---~gLT~~hVKSHLQKYRl 76 (285)
+||++..+-||+.+-+. |.- ....+| .|.+.++- -.+|..||++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988543 432 233333 35554443 34688999999875443
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=63.58 E-value=31 Score=21.69 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=33.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
.||++=+..|+.++..+|- ..-+.|-+.|+ +=|...|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHH
Confidence 4999999999999999982 33567777764 4677788877654
No 10
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=59.90 E-value=42 Score=21.32 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=33.0
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 25 LRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
-.||++=...|+.++.++| . ..-+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999998 1 23466766664 6677777776543
No 11
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.55 E-value=63 Score=23.32 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhhc
Q 023248 144 VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 144 VQR~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~~ 203 (285)
-.+.++-.|..+..-+..|.+.++.-+.. ++......+..+.+|+..-..|.+.+
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~-----~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDS-----GPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----THTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556777778888888888887552 35666777888888888766666554
No 12
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=55.50 E-value=12 Score=29.19 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCCCC----hhHHHhhhCCCCC---CHHHHHHhhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKAT----PKSVLRLMGLKGL---TLYHLKSHLQKYRL 76 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAt----PK~IL~lM~v~gL---T~~hVKSHLQKYRl 76 (285)
+|+..|. +|..+||.+..+ =+.|.+.||++.- ...++|+|-++|=+
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 7999998 599999988544 2678899999752 35677888887733
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.01 E-value=89 Score=28.17 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 76 (285)
..++....|||+..+-..+.+||...- -.+-.++.. ...||+..|-+-||.|..
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 345667999999999999999998654 122222211 267999999999998864
No 14
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=47.40 E-value=41 Score=28.29 Aligned_cols=27 Identities=48% Similarity=0.466 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023248 141 QLEVQERLQMRIEAQGKYLQAILQKAQ 167 (285)
Q Consensus 141 QLEVQR~LQlRIEAQGKYLqsiLEkaq 167 (285)
|=|.-+.||.+|.+||+-|++|++.-+
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444558899999999999999997543
No 15
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=36.76 E-value=32 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.647 Sum_probs=19.3
Q ss_pred cccChHHHHHHHHHHHHhCCCC
Q 023248 25 LRWTADLHDRFVDAVTKLGGPD 46 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~ 46 (285)
-++..|+|..|-+-|..|||..
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999854
No 16
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.35 E-value=1.2e+02 Score=25.33 Aligned_cols=48 Identities=29% Similarity=0.506 Sum_probs=39.0
Q ss_pred CCCcccCh-HHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 22 KPRLRWTA-DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 22 K~RlrWT~-eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
.+|+|-++ ||+++-+..+..-| ...|..|+.|++.|=|+.++-.-||+
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~ 83 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQA 83 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35888888 88887776665544 55689999999999999999998886
No 17
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=25.12 E-value=2.8e+02 Score=26.44 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=45.1
Q ss_pred cchHHHHHhHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhh
Q 023248 122 VPISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTF 192 (285)
Q Consensus 122 ~~i~EALr~QmEVQrrLhEQLEV---------QR~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel 192 (285)
..|..||.-=-+|+|.++.+||+ -..|+-++|..-|||...+.+=|-..- .-..++|-++++|-.+
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k-----~k~~sleK~qseLKKl 140 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHR-----SKGESLEKCQAELKKL 140 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35667776656788888777774 457999999999999977666443332 2345566666666555
Q ss_pred h
Q 023248 193 N 193 (285)
Q Consensus 193 ~ 193 (285)
-
T Consensus 141 R 141 (232)
T cd07646 141 R 141 (232)
T ss_pred H
Confidence 4
No 18
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=24.37 E-value=3.4e+02 Score=29.93 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=38.7
Q ss_pred chHHHHHhHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023248 123 PISEALKCQAEVQQRLQEQLE-------VQERLQMRIEAQGKYLQAILQKAQKSLS 171 (285)
Q Consensus 123 ~i~EALr~QmEVQrrLhEQLE-------VQR~LQlRIEAQGKYLqsiLEkaq~~L~ 171 (285)
.++.|.+-=..-|.+|.|.|+ |+|-+|=-=+|=-+||+.+-|++++.-.
T Consensus 466 ~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~ 521 (820)
T PF13779_consen 466 DLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQ 521 (820)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcc
Confidence 356676666788999999885 8888884446777999999999988755
No 19
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=22.82 E-value=1.1e+02 Score=31.38 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=35.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHh----hhC-------------CCCCCHHHHHHhhhhhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLR----LMG-------------LKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~----lM~-------------v~gLT~~hVKSHLQKYRl~~ 78 (285)
-=+|+++.-+.|.+|....- ..-+-|-|+. |-| =+-=|+.+|.||.|..-..+
T Consensus 76 egvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 34899999999999998764 2334444442 122 13457889999999764433
No 20
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=22.65 E-value=46 Score=23.33 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 31 LHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 31 LH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
|-+.||+-|+...-..+|... .++.|..+|++.|-.
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlGv 36 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLGV 36 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-B
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcCC
Confidence 457899999999877777654 367777777776653
No 21
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=22.41 E-value=3.7e+02 Score=25.60 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=46.1
Q ss_pred cchHHHHHhHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhh
Q 023248 122 VPISEALKCQAEVQQRLQEQLE---------VQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTF 192 (285)
Q Consensus 122 ~~i~EALr~QmEVQrrLhEQLE---------VQR~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel 192 (285)
..|.++|--=-||+|+++.||| +-..|.-.+|..-||+...+.+=|..-- .-..++|-+.++|--+
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k-----~k~dsLeK~~seLKK~ 138 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHK-----NKLDSLEKSQADLKKI 138 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3567777666789999988887 3457888899999999987776433222 2345566666666555
Q ss_pred h
Q 023248 193 N 193 (285)
Q Consensus 193 ~ 193 (285)
.
T Consensus 139 R 139 (226)
T cd07645 139 R 139 (226)
T ss_pred H
Confidence 3
No 22
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=20.49 E-value=95 Score=28.62 Aligned_cols=24 Identities=17% Similarity=0.657 Sum_probs=20.2
Q ss_pred cccCCCCCcccChHHHHHHHHHHH
Q 023248 17 MTRDPKPRLRWTADLHDRFVDAVT 40 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~ 40 (285)
....|+.|++||.++-..+.+-|.
T Consensus 145 ~~~~PrKkF~Wtde~R~lL~~lv~ 168 (214)
T PF14075_consen 145 KVKGPRKKFQWTDEIRELLCELVK 168 (214)
T ss_pred CCCCCCcCCCCCHHHHHHHHHHHH
Confidence 446788899999999999888775
Done!