Query 023248
Match_columns 285
No_of_seqs 180 out of 388
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 9.4E-30 3.2E-34 190.9 7.4 61 18-79 1-61 (64)
2 2yum_A ZZZ3 protein, zinc fing 90.6 0.5 1.7E-05 34.5 5.6 55 20-77 4-61 (75)
3 2yus_A SWI/SNF-related matrix- 90.2 1.1 3.6E-05 33.9 7.2 46 23-74 17-62 (79)
4 2cu7_A KIAA1915 protein; nucle 89.7 0.99 3.4E-05 32.8 6.5 52 20-77 5-56 (72)
5 2hzd_A Transcriptional enhance 87.6 0.38 1.3E-05 37.5 3.1 56 21-78 3-75 (82)
6 1x41_A Transcriptional adaptor 86.7 2.4 8.1E-05 29.8 6.7 51 21-76 5-55 (60)
7 2xag_B REST corepressor 1; ami 84.9 1.5 5.1E-05 43.4 6.5 52 22-79 378-429 (482)
8 2iw5_B Protein corest, REST co 82.9 2 6.8E-05 39.2 5.9 54 20-79 129-182 (235)
9 3sjm_A Telomeric repeat-bindin 80.1 5 0.00017 28.9 6.2 52 17-71 4-55 (64)
10 2cqq_A RSGI RUH-037, DNAJ homo 76.5 3.9 0.00013 30.4 4.8 47 24-76 8-57 (72)
11 2d9a_A B-MYB, MYB-related prot 69.6 17 0.00058 25.1 6.6 50 20-74 4-53 (60)
12 2elk_A SPCC24B10.08C protein; 68.5 21 0.0007 24.8 6.8 48 24-75 9-56 (58)
13 2cqr_A RSGI RUH-043, DNAJ homo 68.0 17 0.00058 27.0 6.6 51 23-76 17-68 (73)
14 2ba2_A D12_ORF131, hypothetica 65.2 15 0.0005 28.9 5.9 41 124-167 34-74 (85)
15 1guu_A C-MYB, MYB proto-oncoge 64.8 18 0.0006 24.2 5.7 46 24-74 3-48 (52)
16 1ity_A TRF1; helix-turn-helix, 63.6 24 0.00083 25.1 6.5 53 19-74 5-57 (69)
17 2yqk_A Arginine-glutamic acid 63.3 6.8 0.00023 28.0 3.5 47 18-69 3-49 (63)
18 3uun_A Dystrophin; triple heli 60.5 26 0.0009 25.6 6.5 62 140-203 40-101 (119)
19 3uul_A Utrophin; spectrin repe 60.2 30 0.001 25.4 6.8 62 141-204 41-102 (118)
20 1gvd_A MYB proto-oncogene prot 54.3 34 0.0012 22.8 5.7 46 24-74 3-48 (52)
21 2dim_A Cell division cycle 5-l 54.2 41 0.0014 23.8 6.4 50 20-74 5-54 (70)
22 4eef_G F-HB80.4, designed hema 48.3 6.9 0.00024 30.0 1.5 58 12-72 8-66 (74)
23 1wgx_A KIAA1903 protein; MYB D 48.2 27 0.00092 26.3 4.7 46 26-74 10-56 (73)
24 2eqr_A N-COR1, N-COR, nuclear 46.8 17 0.00058 25.6 3.3 45 20-70 8-52 (61)
25 2kes_A Synphilin-1; synphillin 45.1 19 0.00067 25.3 3.2 23 133-155 15-41 (48)
26 2da3_A Alpha-fetoprotein enhan 44.6 43 0.0015 23.9 5.3 62 13-77 10-71 (80)
27 2cjj_A Radialis; plant develop 41.7 47 0.0016 25.7 5.4 49 25-78 9-60 (93)
28 1w0t_A Telomeric repeat bindin 41.3 78 0.0027 21.2 6.2 48 24-74 2-49 (53)
29 2li6_A SWI/SNF chromatin-remod 39.3 5.5 0.00019 31.5 -0.3 45 29-76 49-97 (116)
30 2dmt_A Homeobox protein BARH-l 36.4 1.1E+02 0.0039 21.9 6.5 67 8-77 5-71 (80)
31 2lm1_A Lysine-specific demethy 35.8 13 0.00045 28.6 1.4 45 29-74 44-94 (107)
32 2eqy_A RBP2 like, jumonji, at 32.9 20 0.00068 28.6 2.0 45 30-75 43-93 (122)
33 1c20_A DEAD ringer protein; DN 32.7 16 0.00055 29.3 1.4 46 30-76 53-105 (128)
34 1kkx_A Transcription regulator 30.5 13 0.00045 29.9 0.6 45 30-77 49-97 (123)
35 2cxy_A BAF250B subunit, HBAF25 30.3 18 0.00063 28.8 1.4 44 30-74 52-101 (125)
36 2jrz_A Histone demethylase jar 29.9 19 0.00063 28.6 1.3 45 30-75 41-91 (117)
37 1m1j_B Fibrinogen beta chain; 29.3 2.9E+02 0.0098 27.2 9.8 66 132-202 131-197 (464)
38 2aje_A Telomere repeat-binding 28.8 1.3E+02 0.0045 23.8 6.1 51 19-72 8-60 (105)
39 2jxj_A Histone demethylase jar 28.4 19 0.00066 27.1 1.1 44 30-74 37-86 (96)
40 2crg_A Metastasis associated p 28.4 52 0.0018 23.9 3.4 46 21-71 5-50 (70)
41 3ok8_A Brain-specific angiogen 28.1 92 0.0032 27.9 5.7 42 123-164 72-122 (222)
42 2din_A Cell division cycle 5-l 27.9 1.5E+02 0.0052 20.5 6.1 51 20-77 5-55 (66)
43 1gv2_A C-MYB, MYB proto-oncoge 26.6 1.4E+02 0.0047 22.3 5.7 46 24-74 4-49 (105)
44 3lbx_A Spectrin alpha chain, e 24.5 2.7E+02 0.0093 22.3 7.9 53 146-203 98-150 (161)
45 1gv2_A C-MYB, MYB proto-oncoge 24.1 1.9E+02 0.0064 21.6 6.0 46 22-73 54-99 (105)
46 2kk0_A AT-rich interactive dom 22.9 37 0.0013 27.9 2.0 45 30-75 65-116 (145)
47 3osg_A MYB21; transcription-DN 22.5 2E+02 0.0067 22.5 6.1 50 19-74 6-55 (126)
48 3f31_A Spectrin alpha chain, b 22.3 2.3E+02 0.0078 22.2 6.5 53 146-203 88-140 (149)
49 1ig6_A MRF-2, modulator recogn 22.3 16 0.00055 28.2 -0.4 45 29-74 33-84 (107)
50 2k9n_A MYB24; R2R3 domain, DNA 21.6 2.4E+02 0.0082 21.2 6.3 47 23-75 52-98 (107)
51 2g7r_A Mucosa-associated lymph 20.4 38 0.0013 28.0 1.4 50 20-73 53-103 (117)
52 2ltp_A Nuclear receptor corepr 24.6 23 0.00079 26.7 0.0 50 21-76 13-62 (89)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=9.4e-30 Score=190.87 Aligned_cols=61 Identities=44% Similarity=0.788 Sum_probs=57.8
Q ss_pred ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~ 79 (285)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 79999999999999999999999999999999753
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.64 E-value=0.5 Score=34.46 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=41.6
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtP---K~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
+...+=.||+|=+.+|+++|..+| .+...| +.|-+.| +|=|..+|+.|-++|-..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 344556899999999999999998 333223 3455554 689999999999998654
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.21 E-value=1.1 Score=33.93 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=39.0
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
.+-.||++=+.+|++||...|+ .=+.|-+.|+ +=|..+++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 4678999999999999999993 3477777764 78999999999876
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=89.66 E-value=0.99 Score=32.85 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=42.1
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
+...+-.||+|=++.|+++|..+|- .=..|-..| ||=|-.+|+.|.++|-..
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3446678999999999999999992 456676654 789999999999988544
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.56 E-value=0.38 Score=37.54 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhh---h-C-------------CCCCCHHHHHHhhhhhhhhh
Q 023248 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRL---M-G-------------LKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l---M-~-------------v~gLT~~hVKSHLQKYRl~~ 78 (285)
++..=+|.++|-..|++|+...-=.... |-+|.. | | -+-=|..+|.||||.-|..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 4456689999999999999987511122 222211 1 1 13346789999999866543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=86.67 E-value=2.4 Score=29.82 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 76 (285)
+-.|-.||+|=..+|++||..+| . ..=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999998 1 1346677776 67899999999887643
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=84.89 E-value=1.5 Score=43.45 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=44.7
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~ 79 (285)
+..-+||++=|..|++|+.+.| + .=+.|-++++-. |..+|++|.++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 5678999999999999999998 2 578888887765 89999999999987654
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=82.87 E-value=2 Score=39.21 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=44.8
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ 79 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~~~ 79 (285)
..+..-+||+|=+..|++|+...| + .=..|-++ |++=|..+|++|..+||....
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG---K-DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS---S-CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 446677999999999999999998 2 37778777 568899999999999986543
No 9
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=80.07 E-value=5 Score=28.90 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023248 17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71 (285)
Q Consensus 17 ~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHL 71 (285)
+++..+.|-.||+|=-++.+++|.+.|. -.=+.|.+.++.+|=|-.+++-+-
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 4455567778999999999999999982 235678888777788888877544
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.53 E-value=3.9 Score=30.41 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=36.8
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChh---HHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPK---SVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK---~IL~lM~v~gLT~~hVKSHLQKYRl 76 (285)
+-.||.|=+.+|..|+..+++ -||. .|-..| |=|..+|+.|-+++..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 346999999999999999983 4665 455665 5799999999877643
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=69.65 E-value=17 Score=25.05 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=37.8
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4556779999999999999999981 1235566664 677888888777665
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=68.50 E-value=21 Score=24.85 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=36.3
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 75 (285)
+-.||++=..++++||.+.| . ..=+.|-+.|+. +=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999998 1 234566666632 678888888887764
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=68.05 E-value=17 Score=27.01 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=39.2
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhh-CCCCCCHHHHHHhhhhhhh
Q 023248 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM-GLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM-~v~gLT~~hVKSHLQKYRl 76 (285)
.+-.||++=...|+.||..+| +-+|..--++= -|||=|-.+|+.|.+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344699999999999999998 23776554422 3589999999999887643
No 14
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=65.19 E-value=15 Score=28.90 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=28.9
Q ss_pred hHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023248 124 ISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ 167 (285)
Q Consensus 124 i~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq 167 (285)
|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655433333444 8899999999999999987543
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=64.78 E-value=18 Score=24.21 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=35.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
|-.||+|=..+++++|...|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2356666665 678888888877665
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=63.58 E-value=24 Score=25.05 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=41.3
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
.+.++|-.||+|=-+..+++|..+|. -.=+.|...|+..|=|-.+++.+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 35678889999999999999999981 134678888765577888888776654
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.31 E-value=6.8 Score=28.05 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.8
Q ss_pred ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHH
Q 023248 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69 (285)
Q Consensus 18 s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKS 69 (285)
+.+...+-.||++=|..|.+|+...| + .-..|-+.| |+.=|..+|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG---K-df~~I~~~~-v~~Kt~~~~v~ 49 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG---K-NFFRIRKEL-LPNKETGELIT 49 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC---S-CHHHHHHHS-CTTSCHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC---c-cHHHHHHHH-cCCCcHHHHHH
Confidence 34555667999999999999999998 2 244554411 56667777753
No 18
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=60.47 E-value=26 Score=25.59 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhhc
Q 023248 140 EQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 140 EQLEVQR~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~~ 203 (285)
.||+-.+.|+--|+++..-+.+|.+.+++-+.. ...++.....-+..|.+++..-..|...+
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT--GKLSEDEETEVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777889999999999999988873 12223334445777888887666665554
No 19
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=60.17 E-value=30 Score=25.37 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhhch
Q 023248 141 QLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMN 204 (285)
Q Consensus 141 QLEVQR~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~~~ 204 (285)
||+-.+.|+--|.++..-+.+|.+.+++-+.. ...++.....-+..|.+|+..-..|...+.
T Consensus 41 ~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~--~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 41 QFATHETFMMELSAHQSSVGSVLQAGNQLMTQ--GTLSDEEEFEIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666667889999999999999998873 112233344457788888887666665543
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=54.31 E-value=34 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
|-.||+|=..+++++|.+.|- ..=..|-+.| +|=|-.+++.|-..|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999982 1234555554 677888888877665
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.18 E-value=41 Score=23.81 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
+...|=.||++=.++++++|...|- ..=+.|-..|+ |=|-.+++.|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 3446678999999999999999981 23466777764 77888888777665
No 22
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=48.28 E-value=6.9 Score=29.98 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=35.4
Q ss_pred CCccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhh-CCCCCCHHHHHHhhh
Q 023248 12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM-GLKGLTLYHLKSHLQ 72 (285)
Q Consensus 12 ~~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM-~v~gLT~~hVKSHLQ 72 (285)
|.|..++...-.--.||.+=...|..|+.... +-||.+--++- -|||=|...|+.|-|
T Consensus 8 ~~~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 8 DKGSHMASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --------------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cccceeccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 44543333333345699999999999998875 56786654433 268999999999876
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.17 E-value=27 Score=26.29 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChhHHHhh-hCCCCCCHHHHHHhhhhh
Q 023248 26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRL-MGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 26 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l-M~v~gLT~~hVKSHLQKY 74 (285)
.||.+=..+|..|+..++ +.+|-.--++ .-|+|=|.+.|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999987 4588765442 336889999998776654
No 24
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.80 E-value=17 Score=25.59 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=34.6
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSH 70 (285)
..+..-.||++=|+.|++|+...| . .=..|-.+ +|+=|..+|..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 446678899999999999999998 2 34566555 568888887654
No 25
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=45.11 E-value=19 Score=25.31 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=16.7
Q ss_pred HHHHhHHHH----HHHHHHHHHHHHHH
Q 023248 133 EVQQRLQEQ----LEVQERLQMRIEAQ 155 (285)
Q Consensus 133 EVQrrLhEQ----LEVQR~LQlRIEAQ 155 (285)
.+-|+|+|| +-+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677776 45788888888877
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=44.56 E-value=43 Score=23.86 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=41.9
Q ss_pred CccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 13 ~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
++....+.+++|-++|++-- ..++.+.... ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 33445667778888898743 3344444443 35666666666666789999999999887664
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=41.71 E-value=47 Score=25.73 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=38.1
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChhH---HHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023248 25 LRWTADLHDRFVDAVTKLGGPDKATPKS---VLRLMGLKGLTLYHLKSHLQKYRLGQ 78 (285)
Q Consensus 25 lrWT~eLH~rFV~AV~~LGG~~kAtPK~---IL~lM~v~gLT~~hVKSHLQKYRl~~ 78 (285)
=.||+|=...|+.|+..+| +-+|.. |-.. |||=|-.+|+.|-+.+....
T Consensus 9 ~~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD---KDTPDRWANVARA--VEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHH--STTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 3699999999999999998 236654 4444 47999999999998875443
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=41.29 E-value=78 Score=21.17 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=35.8
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999981 234677777765477777877665443
No 29
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.27 E-value=5.5 Score=31.55 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT~~hVKSHLQKYRl 76 (285)
-+|+..|.. |...||.++.+. +.|.+.||+|. ...+++|-.||=.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 378888875 788999987654 57889999987 4677777776633
No 30
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.35 E-value=1.1e+02 Score=21.89 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=44.6
Q ss_pred CCCCCCccccccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 8 SYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 8 ~~~~~~g~~~s~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
+.+.+.|.......++|..+|++--.. ++.+...- ...++..+.++...-|||..+|+.=.|.-|..
T Consensus 5 ~~~~~~~~~~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 5 SSGGEPGTKAKKGRRSRTVFTELQLMG-LEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCSCCCCCCCCCSCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 334455556667778888999864433 33333333 35666777777777789999999988876654
No 31
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=35.81 E-value=13 Score=28.59 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023248 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVKSHLQKY 74 (285)
-+||..|.. |..+||.++.+- +.|.+.||+|.-| ...+++|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 388998876 778999987654 4678899997632 24566666665
No 32
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.92 E-value=20 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKYR 75 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVKSHLQKYR 75 (285)
+|+..|.. |..+||.++.+- +.|.+.|++|.-+ ..++++|-.||=
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 78888875 889999887654 5788899997533 246677666663
No 33
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.72 E-value=16 Score=29.26 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKYRL 76 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gL-T--~~hVKSHLQKYRl 76 (285)
+||..|.. |..+||.++.+- +.|.+.||+|.- | ...+++|-.||=.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 89988876 789999987654 578889998752 2 4567777777633
No 34
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=30.51 E-value=13 Score=29.94 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
+|+..|.. |..+||.++.+. +.|.+.|++|. -..+++|-.||=..
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 78887765 899999998776 56788999987 66778777776443
No 35
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=30.31 E-value=18 Score=28.84 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVKSHLQKY 74 (285)
+||..|.. |..+||.++.+- +.|.+.|+++.-| ...++.|-.||
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 789999986654 5788899998632 23556655555
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=29.92 E-value=19 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKYR 75 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVKSHLQKYR 75 (285)
+|+..|.. |...||.++.+- +.|.+.|++|.-| ..++++|-.||=
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L 91 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV 91 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 78888876 788999987654 5788899997433 346677766663
No 37
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.31 E-value=2.9e+02 Score=27.16 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhh
Q 023248 132 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQ-KSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMES 202 (285)
Q Consensus 132 mEVQrrLhEQLEVQR~LQlRIEAQGKYLqsiLEkaq-~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~ 202 (285)
.+-|+++.+..++=......||.|-+|++.++.... ..+.. ...-++.-+..+..|..+|..+++.
T Consensus 131 k~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~-----L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 131 VKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV-----LRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888899999999988876432 22221 1122344455566666666655554
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=28.76 E-value=1.3e+02 Score=23.77 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=39.0
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhC--CCCCCHHHHHHhhh
Q 023248 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMG--LKGLTLYHLKSHLQ 72 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~--v~gLT~~hVKSHLQ 72 (285)
...++|-.||+|=-+..+++|..+|. -.=+.|++.+. .+|=|--++|.+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHH
Confidence 46788999999999999999999993 13467777553 37888888886533
No 39
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.41 E-value=19 Score=27.13 Aligned_cols=44 Identities=27% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGLT--LYHLKSHLQKY 74 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVKSHLQKY 74 (285)
+|+..|.. |...||.++.+- +.|.+.|++|.-+ ...+++|-.||
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 77887875 788999987654 5778899986533 34556665555
No 40
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.37 E-value=52 Score=23.90 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 023248 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHL 71 (285)
.+..-.||++=|..|.+|+...| -+ -..|-+.| ||.=|...|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 35666899999999999999998 22 45554411 5677777776554
No 41
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=28.06 E-value=92 Score=27.87 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.2
Q ss_pred chHHHHHhHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 023248 123 PISEALKCQAEVQQRLQEQLEV---------QERLQMRIEAQGKYLQAILQ 164 (285)
Q Consensus 123 ~i~EALr~QmEVQrrLhEQLEV---------QR~LQlRIEAQGKYLqsiLE 164 (285)
.|.+||.-=-|+||+|..+||. -.+|+-+||.-.||++....
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778887667899999998874 56899999999999985543
No 42
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.87 E-value=1.5e+02 Score=20.51 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023248 20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77 (285)
Q Consensus 20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl~ 77 (285)
+.-.+-.||+|=..+++++|..+|- .=..|-+++ |=|-.+++.|-+.|-..
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhCh
Confidence 3445668999999999999999982 446666644 58889999998876443
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.58 E-value=1.4e+02 Score=22.33 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
+-.||+|=.++++++|...|. ..=+.|-+.| ||=|..+++.|-..|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999983 1245666665 688888888776654
No 44
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=24.51 E-value=2.7e+02 Score=22.25 Aligned_cols=53 Identities=9% Similarity=0.300 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhhc
Q 023248 146 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 146 R~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~~ 203 (285)
+.++--|+++...++.|.+.+++-+.. ++...+..+..|.+|+..-..|.+.+
T Consensus 98 ~afe~El~a~~~~~~~l~~~g~~Li~~-----~~~~~~~I~~rl~eL~~~W~~L~~~~ 150 (161)
T 3lbx_A 98 QSLEAEVQTKSRLMSELEKTREERFTM-----GHSAHEETKAHIEELRHLWDLLLELT 150 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCT-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455556889999999999999988874 34455666777888877655555443
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=24.07 E-value=1.9e+02 Score=21.56 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
-.+-.||+|=...++++|.++|. .=..|-+. +||=|-.+|+.|-..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHH
Confidence 34568999999999999999983 23455554 589999999988654
No 46
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.86 E-value=37 Score=27.85 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhh
Q 023248 30 DLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKYR 75 (285)
Q Consensus 30 eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gL-T--~~hVKSHLQKYR 75 (285)
+|+..|.. |..+||.++.+- +.|.+.|++|.- | ...+++|-.||=
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL 116 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH
Confidence 78888876 789999987654 578889998762 2 456777766663
No 47
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=22.48 E-value=2e+02 Score=22.46 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=37.1
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023248 19 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74 (285)
Q Consensus 19 ~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKY 74 (285)
..+..|-.||+|=-++++++|...|. .=+.|-+.| +|=|..++..+-..|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence 34567889999999999999999983 456676665 466777777665554
No 48
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=22.28 E-value=2.3e+02 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcchhHHHHhhhhhhhhhhHHhhhc
Q 023248 146 ERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESM 203 (285)
Q Consensus 146 R~LQlRIEAQGKYLqsiLEkaq~~L~~~~~~~~~~~leaak~eLsel~~~~s~~~e~~ 203 (285)
+.++--|+++...++.|.+.+++-+.. ++.+.+..+..|.+++..-..|.+-+
T Consensus 88 ~afe~El~a~~~~l~~v~~~g~~Li~~-----~~~~~~~I~~rl~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 88 QAFEAEVQANSGAIVKLDETGNLMISE-----GHFASETIRTRLMELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999999998884 34455666777888877655555443
No 49
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=22.25 E-value=16 Score=28.24 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhh
Q 023248 29 ADLHDRFVDAVTKLGGPDKATP----KSVLRLMGLKGL-T--LYHLKSHLQKY 74 (285)
Q Consensus 29 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gL-T--~~hVKSHLQKY 74 (285)
-+|+..|.. |..+||.++.+- +.|.+.||++.- | ..++++|-.||
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~ 84 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 84 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 478888875 789999987665 467889998642 2 24566666665
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.61 E-value=2.4e+02 Score=21.23 Aligned_cols=47 Identities=6% Similarity=0.117 Sum_probs=37.5
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023248 23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75 (285)
Q Consensus 23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYR 75 (285)
.+-.||+|=...++++|..+|. .=..|-+.| ||=|-.+|+.|-..+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 4568999999999999999982 245666665 7999999998876543
No 51
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=20.38 E-value=38 Score=27.96 Aligned_cols=50 Identities=32% Similarity=0.472 Sum_probs=37.1
Q ss_pred CCCCCcccCh-HHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 023248 20 DPKPRLRWTA-DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQK 73 (285)
Q Consensus 20 ~~K~RlrWT~-eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQK 73 (285)
.-+.|+|-++ +|+.+=+..+++-| ...+..|..|++.|.|+.++-.-||.
T Consensus 53 ~~~~~fr~S~~~l~~cslkvle~~g----SPSr~LL~~~~~~g~Tl~~L~~~Lq~ 103 (117)
T 2g7r_A 53 GSRGRLRLSCLDLEQCSLKVLEPEG----SPSLCLLKLMGEKGCTVTELSDFLQA 103 (117)
T ss_dssp C------CCHHHHHHHHGGGGSTTC----CHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccccccChHHhhhhhhhhhccCC----ChHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3458899998 89988877777665 44588999999999999999999995
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=24.64 E-value=23 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhh
Q 023248 21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 (285)
Q Consensus 21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVKSHLQKYRl 76 (285)
.-.+=.||+|=+..|+++|..+|- .=..|-.. ++|=|-.+|+.|...|.-
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 345568999999999999999982 23445554 468888899888776643
Done!