BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023249
MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTFGSLVRSGSDDPVSFLLQMFPDVDPEVVK
SVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEE
VRSAHTNFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE
LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM
KIRILNGISEMGSQILVKIAHQNSLTMMIIIVIVSDNRHSPMVVL

High Scoring Gene Products

Symbol, full name Information P value
AT5G02510 protein from Arabidopsis thaliana 3.2e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023249
        (285 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2181738 - symbol:AT5G02510 "AT5G02510" species...   211  3.2e-17   1


>TAIR|locus:2181738 [details] [associations]
            symbol:AT5G02510 "AT5G02510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL162971
            IPI:IPI00526327 PIR:T48272 RefSeq:NP_195871.1 UniGene:At.54688
            DNASU:831869 EnsemblPlants:AT5G02510.1 GeneID:831869
            KEGG:ath:AT5G02510 TAIR:At5g02510 eggNOG:NOG268031
            HOGENOM:HOG000238845 InParanoid:Q9LZ51 OMA:RVIANQH PhylomeDB:Q9LZ51
            ProtClustDB:CLSN2916778 Genevestigator:Q9LZ51 Uniprot:Q9LZ51
        Length = 179

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/110 (40%), Positives = 60/110 (54%)

Query:   131 ENITDGSKWVDLFVHEMMSXXXXXXXXXXXXXILEVFERSIITNSKASKELEHASLKEHL 190
             E++ DG+KWVD  V EM               ILE  E  I  N+ ASK+LE+AS+KE L
Sbjct:    42 EDMIDGAKWVDRLVSEMTKAINIDDMRRRVAVILEALESIIKKNTNASKKLEYASMKESL 101

Query:   191 QSLLNDNQILKKAVSIQHERHXXXXXXXXXXXXXXXXISQYQDQARNLEM 240
             QSL+NDNQILK+ ++ QH+R                 + QYQ+Q   LE+
Sbjct:   102 QSLINDNQILKRVIANQHQRSSENEEKAKQVLHLRGVVGQYQEQVHKLEL 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       256   0.00086  114 3  11 22  0.47    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.47u 0.10s 22.57t   Elapsed:  00:00:01
  Total cpu time:  22.47u 0.10s 22.57t   Elapsed:  00:00:01
  Start:  Thu May  9 16:07:25 2013   End:  Thu May  9 16:07:26 2013

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