BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023249
         (285 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9
 pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9
 pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 3
 pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 3
 pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 5
 pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 5
 pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 7
 pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Ptpn9 (Meg2) Complex With Compound 7
          Length = 314

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 74  IDRLRV------LSFSNISERIKSQGLEPTIIGNFSAVPGESATSCS 114
           ID LRV      L+ SN+  R K Q  EP I+ + SA  G + T CS
Sbjct: 206 IDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCS 252


>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
           P450 In Complex With Androstenedione
 pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
           Refined At 2.75 Angstrom
 pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
           With Breast Cancer Drug Exemestane
 pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
           Designed Inhibitor Hddg029 (Compound 4)
 pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
           Designed Inhibitor Hddg046 (Compound 5)
          Length = 503

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 46  FLLQMFPDVDPEVVK---SVLGEHDNKIEDAIDRLRVLS--------FSNISERIKSQGL 94
           FL+   P+V+  ++K   +V+GE D KI+D I +L+V+         +  + + +  + L
Sbjct: 320 FLIAKHPNVEEAIIKEIQTVIGERDIKIDD-IQKLKVMENFIYESMRYQPVVDLVMRKAL 378

Query: 95  EPTIIGNFSAVPGESAT-SCSQMSEEEVRSAHTNFCGENIT 134
           E  +I  +    G +   +  +M   E       F  EN  
Sbjct: 379 EDDVIDGYPVKKGTNIILNIGRMHRLEFFPKPNEFTLENFA 419


>pdb|1MN3|A Chain A, Cue Domain Of Yeast Vps9p
          Length = 54

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
          D ++ L   FPD DP +++ V     ++IE  +D L  LS
Sbjct: 14 DTLNTLQNXFPDXDPSLIEDVCIAKKSRIEPCVDALLSLS 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,543,389
Number of Sequences: 62578
Number of extensions: 212083
Number of successful extensions: 509
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)