BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023249
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UZ40|DP2L_HALMA DNA polymerase II large subunit OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=polC
PE=3 SV=1
Length = 1395
Score = 35.4 bits (80), Expect = 0.47, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 63 LGEHDNKIEDAID---RLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEE 119
LG ++K++ ++ +LR + S+++ERI P +IGN A C E
Sbjct: 1262 LGSMEDKMDAQLEISRKLRAVVESDVAERIIEYHFLPDLIGNLRAF-SRQEVRCLDCGES 1320
Query: 120 EVRSAHTNFCGE-----NITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSI 171
R+ T C E N+T V+ ++ + AD AR + L++ ER I
Sbjct: 1321 FRRAPLTGDCRECGGRVNLTVHEGSVNKYIDTAIRVADEFGARDYTKQRLKILERKI 1377
>sp|Q165U5|SYA_ROSDO Alanine--tRNA ligase OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=alaS PE=3 SV=1
Length = 885
Score = 35.4 bits (80), Expect = 0.49, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 132 NITDGSKWVDLFVHEMMSAADLDDARGRAARI-LEVFERSIITNSKASKELEHASLKEHL 190
N+TD K D+FVH M + + G AA++ ++ R+ I + ++ L H +L+E L
Sbjct: 518 NVTDCRKTADVFVH-MAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALREAL 576
Query: 191 QSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISE 250
+ L ++ + Q +E+ ++ ++ Y Q +E +I + E
Sbjct: 577 GDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDAARE 636
Query: 251 MGSQIL 256
+G+Q L
Sbjct: 637 LGAQAL 642
>sp|Q18ER3|DP2L_HALWD DNA polymerase II large subunit OS=Haloquadratum walsbyi (strain DSM
16790) GN=polC PE=3 SV=1
Length = 2289
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 57 EVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQM 116
+ + S++ + D ++E A +LR + ++++ER+ P +IGN A T C
Sbjct: 2154 KTLDSMMDKMDAQLELA-RKLRAVDETDVAERVIEYHFLPDLIGNLRAF-SRQQTRCLDC 2211
Query: 117 SEEEVRSAHTNFCGE-----NIT--DGS--KWVDLFVHEMMSAADLDDARGRAARILEVF 167
E R T C E N+T +GS K++D +H A+ D R + LEV
Sbjct: 2212 GESYRRMPLTGECRECGGRVNLTVHEGSVNKYMDTAIH----IAEEFDCREYTKQRLEVL 2267
Query: 168 ERSI 171
ERS+
Sbjct: 2268 ERSL 2271
>sp|B2HHM7|PANB_MYCMM 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mycobacterium
marinum (strain ATCC BAA-535 / M) GN=panB PE=3 SV=1
Length = 297
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 85 ISERIKSQGLEPTIIGNFSAVP-GESATSCSQMSEEEVRSAHTNFCGENITDGSKWVDLF 143
+SE+I Q E + G S VP GES+ S + +VR+ H + +G KW L
Sbjct: 1 MSEQISEQS-EQNVYGASSPVPAGESSPSAASAPRTKVRTHHLQ---KWKAEGHKWAMLT 56
Query: 144 VHEMMSAADLDDA 156
V++ +A DDA
Sbjct: 57 VYDYSTARAFDDA 69
>sp|Q9HMX8|DP2L_HALSA DNA polymerase II large subunit OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=polC PE=3 SV=1
Length = 1370
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 61 SVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEE 120
S++ + D ++E A +LR ++ ++++ER+ P +IGN A T C E+
Sbjct: 1239 SMMDKMDAQLELA-RKLRSVAETDVAERVIEYHFLPDLIGNLRAF-SRQETRCLDCGEKY 1296
Query: 121 VRSAHTNFCGE-----NITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSI 171
R + C E N+T V+ ++ M A D R + LE+ +R +
Sbjct: 1297 RRMPLSGDCRECGGRVNLTVHEGSVNKYMDTAMRVATEYDCREYTKQRLEIMDRRL 1352
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 49 QMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
++F D+DP+VV +L E D K+E+A+D L LS
Sbjct: 56 EIFSDLDPDVVYLMLSECDFKVENAMDCLLELS 88
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1B OS=Danio
rerio GN=smarcad1b PE=3 SV=1
Length = 954
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 13 EEICGSSSPTSAKRS-RCSTFGSLVRSG--SDDPVSFLLQM---FPDVDPEVVKSVLGEH 66
+++CGSS + +++ R S G S D L ++ FP ++ ++ VL EH
Sbjct: 144 QQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEH 203
Query: 67 DNKIEDAIDRLRVLS 81
D I+DA++ LR+ S
Sbjct: 204 DWLIDDALETLRMFS 218
>sp|Q86JI5|PKS5_DICDI Probable polyketide synthase 5 OS=Dictyostelium discoideum GN=pks5
PE=2 SV=1
Length = 2512
Score = 32.3 bits (72), Expect = 3.8, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 152 DLDDARGRAARILEVFERSIITNSKAS----------KELEHASLKEHLQSLLNDNQILK 201
+ D R +RI RS++T SKA KE ++ + + ++ ++ +N+I K
Sbjct: 2064 NFDLMSQRNSRI----NRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDK 2119
Query: 202 KAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQIL---VK 258
VS HE + E K ++ S YQ + NL I ++ G S + +IL +K
Sbjct: 2120 IVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNI-LITGQSGIILEILKWIIK 2178
Query: 259 IAHQNSLTMMIII 271
++ N++ +II+
Sbjct: 2179 YSNINTIENVIIL 2191
>sp|Q5FWR0|SMRCD_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Xenopus
tropicalis GN=smarcad1 PE=2 SV=1
Length = 1003
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
V L + FPD+D E ++ VL EHD +A++ L++ +
Sbjct: 226 VKKLQRHFPDLDKEELREVLQEHDWSFHEALEALKLFA 263
>sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1A OS=Danio
rerio GN=smarcad1a PE=2 SV=1
Length = 972
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNIS 86
PD++ EV++ +L EHD E+A+ L V S ++ S
Sbjct: 188 PDIEKEVLRDILKEHDWDYENALGSLLVFSSTDTS 222
>sp|A0PNG6|PANB_MYCUA 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mycobacterium
ulcerans (strain Agy99) GN=panB PE=3 SV=1
Length = 297
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 85 ISERIKSQGLEPTIIGNFSAVP-GESATSCSQMSEEEVRSAHTNFCGENITDGSKWVDLF 143
+SE+I Q E + G VP GES+ S + +VR+ H + +G KW L
Sbjct: 1 MSEQISEQS-EQNVYGACPPVPAGESSPSAASAPRTKVRTHHLQ---KWKAEGHKWAMLT 56
Query: 144 VHEMMSAADLDDA 156
V++ +A DDA
Sbjct: 57 VYDYSTARAFDDA 69
>sp|Q8D233|RPOB_WIGBR DNA-directed RNA polymerase subunit beta OS=Wigglesworthia
glossinidia brevipalpis GN=rpoB PE=3 SV=1
Length = 1342
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 164 LEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKE--V 221
+E+F R + K + E+E+ +KE + + + +I K ++ IQ E L++ E +
Sbjct: 930 VEIFTRDGVKKDKRALEIEYMQIKEAKKDIYEELEIFKSSLKIQIEYFLKENNIEYDSLS 989
Query: 222 ELLKLVISQYQDQARNLEMKIRILNGISE 250
ELLK +NL K LN I E
Sbjct: 990 ELLK-------GNIKNLIFKNNNLNNIFE 1011
>sp|Q6BRB3|DEF1_DEBHA RNA polymerase II degradation factor 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEF1 PE=3 SV=2
Length = 742
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 47 LLQMFPDVDPEVVKSVLGEHDNKIEDAID 75
LL+MFPD + + + S+L EH+N +E ID
Sbjct: 35 LLEMFPDWESDDLSSLLAEHNNILEVVID 63
>sp|Q6DFR0|TOLIP_XENTR Toll-interacting protein OS=Xenopus tropicalis GN=tollip PE=2 SV=1
Length = 269
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77
+ F+ MFP +DPEV++SVL + A++ L
Sbjct: 229 IKFIKDMFPTMDPEVIRSVLEAQGGNRDAAVNSL 262
>sp|Q4JX51|G6PI_CORJK Glucose-6-phosphate isomerase OS=Corynebacterium jeikeium (strain
K411) GN=pgi PE=3 SV=2
Length = 565
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNF 102
P F+ + P D HD + + + RVL+F +E +K +G+ P +I +
Sbjct: 418 PADFIGFVNPHDDAVAADGTTSMHDMLMSNFFAQTRVLAFGKNAEELKEEGVAPELIPH- 476
Query: 103 SAVPGESATSC 113
+PG T+
Sbjct: 477 KVMPGNRPTTT 487
>sp|P38707|SYNC_YEAST Asparagine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DED81 PE=1 SV=1
Length = 554
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 200 LKKAVSIQHERHLEQEQKEKE---VELLKLVISQYQDQARNLEMKIRILNGISEMGSQIL 256
LKK Q E+ L+++QKE E +L L I+ +D++ +K RI + S++G ++
Sbjct: 74 LKKKAVKQKEQELKKQQKEAENAAKQLSALNITIKEDESLPAAIKTRIYDSYSKVGQRVK 133
Query: 257 VK-IAHQNSLTMMIIIVIVSDN 277
V H+ +I V++ D
Sbjct: 134 VSGWIHRLRSNKKVIFVVLRDG 155
>sp|Q6D7R1|PUR7_ERWCT Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=purC PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 141 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 196
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 197 NQILKKAVSI 206
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
>sp|C6DBS2|PUR7_PECCP Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Pectobacterium carotovorum subsp. carotovorum (strain
PC1) GN=purC PE=3 SV=1
Length = 237
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 141 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 196
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 197 NQILKKAVSI 206
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,729,641
Number of Sequences: 539616
Number of extensions: 3631808
Number of successful extensions: 16699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 16577
Number of HSP's gapped (non-prelim): 301
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)