Query 023249
Match_columns 285
No_of_seqs 64 out of 66
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 98.9 2E-08 4.4E-13 103.2 12.5 120 134-261 307-430 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.4E-06 2.9E-11 59.9 4.3 38 43-80 4-41 (42)
3 smart00546 CUE Domain that may 98.2 1.9E-06 4.2E-11 59.2 4.3 38 42-79 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.3 0.00043 9.3E-09 48.4 4.1 35 43-77 4-38 (39)
5 COG3074 Uncharacterized protei 96.8 0.015 3.2E-07 45.9 9.5 67 162-238 4-72 (79)
6 PRK15422 septal ring assembly 96.3 0.057 1.2E-06 43.1 9.6 67 162-238 4-72 (79)
7 PF00627 UBA: UBA/TS-N domain; 95.4 0.028 6E-07 37.5 4.0 34 42-77 4-37 (37)
8 PF09744 Jnk-SapK_ap_N: JNK_SA 93.4 1.5 3.3E-05 38.7 11.4 82 161-245 32-117 (158)
9 PF06005 DUF904: Protein of un 93.4 1.1 2.4E-05 34.8 9.3 60 162-238 4-65 (72)
10 PF15619 Lebercilin: Ciliary p 92.8 0.78 1.7E-05 41.4 9.0 64 179-242 17-91 (194)
11 PF10205 KLRAQ: Predicted coil 92.1 0.81 1.8E-05 38.1 7.4 48 189-246 6-53 (102)
12 smart00165 UBA Ubiquitin assoc 91.7 0.35 7.5E-06 31.7 4.0 33 43-77 4-36 (37)
13 cd00194 UBA Ubiquitin Associat 91.3 0.42 9E-06 31.4 4.1 34 43-78 4-37 (38)
14 PRK09413 IS2 repressor TnpA; R 88.4 0.75 1.6E-05 37.8 4.3 32 179-210 76-107 (121)
15 PRK10884 SH3 domain-containing 87.9 3.7 7.9E-05 37.5 8.8 66 179-246 98-166 (206)
16 PF15058 Speriolin_N: Sperioli 86.7 0.62 1.3E-05 42.8 3.1 22 181-203 19-40 (200)
17 PF04111 APG6: Autophagy prote 86.0 16 0.00034 35.2 12.3 91 152-242 40-136 (314)
18 PF02403 Seryl_tRNA_N: Seryl-t 85.2 9.4 0.0002 30.4 8.9 81 164-244 11-99 (108)
19 TIGR03752 conj_TIGR03752 integ 84.5 9.4 0.0002 39.3 10.5 17 179-195 78-94 (472)
20 PF10226 DUF2216: Uncharacteri 83.4 5.4 0.00012 36.7 7.5 63 182-245 56-127 (195)
21 PHA02047 phage lambda Rz1-like 82.8 4.6 0.0001 33.7 6.2 43 201-246 26-68 (101)
22 TIGR03495 phage_LysB phage lys 81.6 14 0.0003 32.1 9.0 67 179-246 28-95 (135)
23 PF13747 DUF4164: Domain of un 81.1 26 0.00057 28.0 11.6 83 150-237 3-85 (89)
24 PRK11637 AmiB activator; Provi 80.1 59 0.0013 32.0 14.0 9 147-155 145-153 (428)
25 PF14555 UBA_4: UBA-like domai 78.2 3.3 7.2E-05 28.4 3.4 36 43-79 3-38 (43)
26 TIGR03752 conj_TIGR03752 integ 77.2 27 0.00059 36.0 10.9 24 179-202 71-94 (472)
27 KOG4005 Transcription factor X 77.2 16 0.00035 35.1 8.7 50 179-228 95-148 (292)
28 PRK13182 racA polar chromosome 76.6 35 0.00076 30.5 10.3 95 136-233 42-146 (175)
29 KOG1853 LIS1-interacting prote 76.2 20 0.00043 34.9 9.1 68 179-246 50-125 (333)
30 KOG4588 Predicted ubiquitin-co 75.5 2.7 5.8E-05 40.0 3.1 32 50-81 1-32 (267)
31 PF10828 DUF2570: Protein of u 75.5 31 0.00068 28.2 9.0 62 179-243 30-91 (110)
32 COG4797 Predicted regulatory d 74.7 2.1 4.6E-05 40.9 2.2 25 47-71 4-29 (268)
33 PF13851 GAS: Growth-arrest sp 74.4 26 0.00056 31.7 9.0 61 179-246 53-113 (201)
34 PF05010 TACC: Transforming ac 74.2 57 0.0012 30.1 11.2 86 161-246 43-138 (207)
35 PF15058 Speriolin_N: Sperioli 74.0 7.9 0.00017 35.8 5.6 37 183-230 7-43 (200)
36 KOG0971 Microtubule-associated 72.7 60 0.0013 36.6 12.6 35 179-213 330-382 (1243)
37 PF10473 CENP-F_leu_zip: Leuci 72.4 29 0.00063 30.3 8.5 66 179-262 50-115 (140)
38 PRK09039 hypothetical protein; 72.3 84 0.0018 30.6 12.5 96 151-246 109-214 (343)
39 PF11932 DUF3450: Protein of u 70.8 85 0.0018 28.7 11.6 45 179-223 54-98 (251)
40 PF11488 Lge1: Transcriptional 70.3 17 0.00036 28.4 6.0 49 207-263 25-73 (80)
41 PRK13922 rod shape-determining 69.0 72 0.0016 29.3 10.8 38 192-229 73-110 (276)
42 PF02954 HTH_8: Bacterial regu 67.5 4.2 9E-05 27.7 1.9 25 54-78 5-29 (42)
43 PRK03918 chromosome segregatio 67.1 1.4E+02 0.003 31.7 13.7 31 143-173 150-180 (880)
44 PF06156 DUF972: Protein of un 67.1 28 0.00062 28.9 7.0 32 179-210 20-51 (107)
45 COG3206 GumC Uncharacterized p 66.9 86 0.0019 31.0 11.6 82 161-242 319-403 (458)
46 PF11559 ADIP: Afadin- and alp 66.7 78 0.0017 26.7 11.7 94 153-246 43-146 (151)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.6 80 0.0017 26.4 10.1 68 179-246 8-86 (132)
48 KOG0995 Centromere-associated 64.7 54 0.0012 34.8 10.0 66 179-244 299-364 (581)
49 PF10234 Cluap1: Clusterin-ass 64.4 49 0.0011 31.8 8.9 98 134-239 131-249 (267)
50 PF07058 Myosin_HC-like: Myosi 63.8 35 0.00075 33.9 7.9 56 179-239 5-72 (351)
51 TIGR00219 mreC rod shape-deter 63.4 20 0.00043 34.0 6.2 38 179-229 71-108 (283)
52 PF09789 DUF2353: Uncharacteri 63.1 40 0.00086 33.1 8.3 69 179-247 84-183 (319)
53 PF08317 Spc7: Spc7 kinetochor 62.1 1.5E+02 0.0033 28.4 12.1 80 179-261 207-291 (325)
54 PRK02224 chromosome segregatio 61.1 2E+02 0.0044 30.6 13.6 45 179-223 211-255 (880)
55 PF11577 NEMO: NF-kappa-B esse 61.0 76 0.0017 24.6 8.1 57 186-242 4-68 (68)
56 CHL00098 tsf elongation factor 60.7 6.3 0.00014 36.0 2.3 41 44-85 5-45 (200)
57 PF07106 TBPIP: Tat binding pr 60.7 64 0.0014 27.7 8.3 65 179-244 77-141 (169)
58 KOG4343 bZIP transcription fac 60.5 12 0.00027 39.4 4.5 50 163-212 279-333 (655)
59 PRK13169 DNA replication intia 59.8 47 0.001 27.9 7.1 25 179-203 20-44 (110)
60 PF07888 CALCOCO1: Calcium bin 59.7 56 0.0012 34.4 9.1 19 10-30 7-25 (546)
61 TIGR00116 tsf translation elon 58.5 7.1 0.00015 37.6 2.3 28 58-85 21-48 (290)
62 PRK06369 nac nascent polypepti 58.1 11 0.00025 31.9 3.2 27 53-79 88-114 (115)
63 PF10046 BLOC1_2: Biogenesis o 58.0 98 0.0021 24.9 11.0 47 200-246 40-86 (99)
64 TIGR02791 VirB5 P-type DNA tra 56.8 19 0.0004 32.7 4.6 35 220-254 42-76 (220)
65 PRK09377 tsf elongation factor 56.5 8 0.00017 37.2 2.3 29 57-85 21-49 (290)
66 PF05300 DUF737: Protein of un 56.3 81 0.0018 28.8 8.5 21 223-243 145-165 (187)
67 KOG0804 Cytoplasmic Zn-finger 56.2 1.2E+02 0.0026 31.7 10.5 33 161-193 370-408 (493)
68 PRK12332 tsf elongation factor 56.2 8.4 0.00018 35.1 2.3 42 43-85 7-48 (198)
69 PRK11637 AmiB activator; Provi 56.1 2.1E+02 0.0046 28.2 12.1 19 220-238 234-252 (428)
70 KOG0250 DNA repair protein RAD 55.7 1.6E+02 0.0035 33.5 12.1 64 179-246 406-471 (1074)
71 PF06005 DUF904: Protein of un 54.9 65 0.0014 25.0 6.7 23 179-201 30-52 (72)
72 TIGR00264 alpha-NAC-related pr 54.7 14 0.0003 31.6 3.1 26 53-78 90-115 (116)
73 PF13118 DUF3972: Protein of u 54.3 72 0.0015 27.7 7.4 49 163-226 72-120 (126)
74 TIGR01834 PHA_synth_III_E poly 54.3 2.3E+02 0.005 28.0 13.3 100 136-242 206-319 (320)
75 PF12325 TMF_TATA_bd: TATA ele 54.1 1.4E+02 0.003 25.4 11.5 14 187-200 50-63 (120)
76 PRK13922 rod shape-determining 54.0 93 0.002 28.6 8.7 22 179-200 74-95 (276)
77 PRK05431 seryl-tRNA synthetase 53.6 1.4E+02 0.003 29.9 10.4 65 179-243 33-97 (425)
78 TIGR01837 PHA_granule_1 poly(h 53.3 39 0.00085 28.2 5.6 20 220-239 97-116 (118)
79 PRK14872 rod shape-determining 52.7 33 0.00072 33.9 5.8 39 179-231 62-100 (337)
80 TIGR00219 mreC rod shape-deter 52.6 73 0.0016 30.2 8.0 13 190-202 68-80 (283)
81 KOG4603 TBP-1 interacting prot 51.8 1.3E+02 0.0028 27.8 9.0 52 181-240 86-144 (201)
82 TIGR02894 DNA_bind_RsfA transc 51.2 61 0.0013 29.1 6.8 39 161-201 86-124 (161)
83 PRK11091 aerobic respiration c 51.1 2.5E+02 0.0055 29.1 12.2 58 139-203 68-125 (779)
84 TIGR03319 YmdA_YtgF conserved 50.7 3.1E+02 0.0066 28.4 13.1 13 154-166 28-40 (514)
85 PLN02678 seryl-tRNA synthetase 50.6 1.2E+02 0.0027 30.8 9.7 67 179-245 38-104 (448)
86 KOG4196 bZIP transcription fac 50.5 1.5E+02 0.0032 26.1 8.8 67 179-246 45-115 (135)
87 PF13851 GAS: Growth-arrest sp 49.4 2E+02 0.0044 26.0 12.0 60 179-238 67-126 (201)
88 PF07334 IFP_35_N: Interferon- 48.9 29 0.00063 27.6 3.9 28 179-206 5-32 (76)
89 TIGR02449 conserved hypothetic 48.8 57 0.0012 25.2 5.4 23 179-201 19-41 (65)
90 smart00787 Spc7 Spc7 kinetocho 48.7 1.3E+02 0.0028 29.2 9.1 79 180-261 203-286 (312)
91 PHA02562 46 endonuclease subun 47.9 2.4E+02 0.0053 28.1 11.1 26 179-204 179-204 (562)
92 PRK13729 conjugal transfer pil 47.7 91 0.002 32.4 8.2 26 179-204 74-99 (475)
93 PF09744 Jnk-SapK_ap_N: JNK_SA 47.4 97 0.0021 27.4 7.4 60 179-238 87-147 (158)
94 PRK13729 conjugal transfer pil 47.3 36 0.00078 35.2 5.3 22 179-200 81-102 (475)
95 PF06810 Phage_GP20: Phage min 46.7 1.1E+02 0.0024 26.7 7.6 67 179-261 25-95 (155)
96 PF13097 CENP-U: CENP-A nucleo 46.7 1E+02 0.0022 28.2 7.5 42 162-203 108-157 (175)
97 PF06782 UPF0236: Uncharacteri 46.4 1.1E+02 0.0023 31.1 8.5 118 134-269 264-385 (470)
98 KOG0612 Rho-associated, coiled 46.4 2.5E+02 0.0055 32.6 11.9 68 179-246 463-535 (1317)
99 KOG3119 Basic region leucine z 46.0 62 0.0014 30.5 6.4 25 179-203 227-251 (269)
100 PF14362 DUF4407: Domain of un 45.3 1.6E+02 0.0034 27.5 8.9 14 164-177 103-116 (301)
101 smart00804 TAP_C C-terminal do 45.1 29 0.00062 26.4 3.3 33 50-82 21-53 (63)
102 PF07996 T4SS: Type IV secreti 45.0 26 0.00056 30.4 3.5 38 218-255 18-55 (195)
103 KOG4571 Activating transcripti 44.7 1.2E+02 0.0025 29.8 8.0 41 182-232 249-289 (294)
104 PF10267 Tmemb_cc2: Predicted 44.6 1.8E+02 0.0039 29.4 9.6 25 218-242 61-85 (395)
105 PF10506 MCC-bdg_PDZ: PDZ doma 44.2 1.5E+02 0.0033 23.0 7.9 56 185-241 2-61 (67)
106 COG1938 Archaeal enzymes of AT 43.5 37 0.0008 32.3 4.4 62 134-196 157-226 (244)
107 PHA00276 phage lambda Rz-like 43.3 68 0.0015 28.4 5.7 67 207-281 37-105 (144)
108 PF14197 Cep57_CLD_2: Centroso 43.2 1.5E+02 0.0033 22.8 7.7 23 179-201 3-25 (69)
109 COG5296 Transcription factor i 43.1 40 0.00087 34.7 4.8 55 184-246 350-404 (521)
110 PF04849 HAP1_N: HAP1 N-termin 42.9 3.4E+02 0.0074 26.7 11.1 96 142-242 199-306 (306)
111 COG1308 EGD2 Transcription fac 42.8 26 0.00057 30.2 3.0 23 56-78 99-121 (122)
112 smart00338 BRLZ basic region l 42.5 1.2E+02 0.0026 22.1 6.2 21 182-202 27-47 (65)
113 KOG0989 Replication factor C, 42.3 22 0.00047 35.4 2.8 55 26-84 177-238 (346)
114 PF06364 DUF1068: Protein of u 41.8 1.3E+02 0.0028 27.6 7.3 42 188-234 84-125 (176)
115 KOG0976 Rho/Rac1-interacting s 41.8 3E+02 0.0064 31.2 11.2 28 219-246 379-406 (1265)
116 PF10211 Ax_dynein_light: Axon 41.4 1.7E+02 0.0037 26.2 8.2 62 183-246 122-183 (189)
117 PF08614 ATG16: Autophagy prot 41.3 2E+02 0.0043 25.4 8.5 74 162-245 102-177 (194)
118 PF11180 DUF2968: Protein of u 40.5 3E+02 0.0066 25.5 11.7 24 219-242 161-184 (192)
119 PF07139 DUF1387: Protein of u 40.0 2.6E+02 0.0056 27.5 9.6 72 166-240 154-232 (302)
120 TIGR01541 tape_meas_lam_C phag 39.6 3.8E+02 0.0082 26.3 11.6 24 219-242 83-106 (332)
121 KOG2264 Exostosin EXT1L [Signa 39.5 2.2E+02 0.0048 31.0 9.7 66 157-242 86-151 (907)
122 PF12958 DUF3847: Protein of u 39.4 51 0.0011 26.7 4.1 29 213-241 2-30 (86)
123 KOG0977 Nuclear envelope prote 39.3 57 0.0012 34.3 5.4 39 204-246 31-69 (546)
124 PF05597 Phasin: Poly(hydroxya 39.3 1.9E+02 0.0041 24.9 7.8 43 153-195 74-123 (132)
125 PF01166 TSC22: TSC-22/dip/bun 39.3 25 0.00054 26.9 2.1 27 220-246 15-41 (59)
126 COG2433 Uncharacterized conser 38.8 4.3E+02 0.0094 28.7 11.6 71 160-230 413-492 (652)
127 PRK13923 putative spore coat p 38.5 2.4E+02 0.0052 25.6 8.5 44 162-205 29-79 (170)
128 COG2433 Uncharacterized conser 37.9 4.7E+02 0.01 28.4 11.7 19 179-197 448-466 (652)
129 KOG3119 Basic region leucine z 37.4 1.2E+02 0.0026 28.7 6.8 39 186-234 220-258 (269)
130 TIGR02894 DNA_bind_RsfA transc 37.2 2E+02 0.0044 25.9 7.9 10 162-171 28-37 (161)
131 TIGR01069 mutS2 MutS2 family p 36.9 5.1E+02 0.011 28.2 12.2 7 159-165 501-507 (771)
132 cd07429 Cby_like Chibby, a nuc 36.4 43 0.00092 28.3 3.3 19 179-197 84-102 (108)
133 PF01166 TSC22: TSC-22/dip/bun 36.3 60 0.0013 24.9 3.8 18 180-197 13-30 (59)
134 PF15070 GOLGA2L5: Putative go 36.2 5E+02 0.011 27.8 11.7 39 179-217 92-130 (617)
135 KOG2273 Membrane coat complex 35.6 3.8E+02 0.0081 27.0 10.4 59 179-237 354-412 (503)
136 PF03943 TAP_C: TAP C-terminal 35.5 15 0.00033 26.5 0.5 31 53-83 12-42 (51)
137 KOG1071 Mitochondrial translat 35.4 28 0.00061 34.5 2.4 40 41-81 47-86 (340)
138 PF04380 BMFP: Membrane fusoge 35.1 2.2E+02 0.0047 22.2 7.8 29 212-240 50-78 (79)
139 PF15619 Lebercilin: Ciliary p 34.8 3E+02 0.0065 25.0 8.7 25 179-203 66-90 (194)
140 PF03962 Mnd1: Mnd1 family; I 34.6 2.9E+02 0.0062 24.8 8.5 26 221-246 137-162 (188)
141 COG4026 Uncharacterized protei 34.5 2.1E+02 0.0046 27.6 7.9 65 179-246 133-197 (290)
142 PF11336 DUF3138: Protein of u 34.4 57 0.0012 33.8 4.4 64 179-242 23-106 (514)
143 PHA02047 phage lambda Rz1-like 34.4 1.6E+02 0.0035 24.7 6.3 48 179-232 32-79 (101)
144 COG4942 Membrane-bound metallo 34.2 5.4E+02 0.012 26.5 12.4 88 158-246 146-237 (420)
145 PF05911 DUF869: Plant protein 34.2 4.2E+02 0.009 29.2 11.0 65 179-246 90-154 (769)
146 PF09738 DUF2051: Double stran 34.1 4.5E+02 0.0098 25.6 12.6 79 157-238 83-166 (302)
147 PRK00106 hypothetical protein; 34.0 5.8E+02 0.013 26.9 13.2 12 154-165 49-60 (535)
148 TIGR01005 eps_transp_fam exopo 33.9 5.8E+02 0.013 26.9 11.8 16 179-194 314-329 (754)
149 TIGR00414 serS seryl-tRNA synt 33.3 1.8E+02 0.004 29.0 7.7 31 214-244 71-101 (418)
150 PF13870 DUF4201: Domain of un 33.3 3.2E+02 0.0069 23.6 9.3 30 212-241 145-174 (177)
151 PF03961 DUF342: Protein of un 33.1 2.9E+02 0.0062 27.6 9.0 13 184-196 337-349 (451)
152 KOG4552 Vitamin-D-receptor int 32.8 2.2E+02 0.0048 27.2 7.7 26 253-278 128-156 (272)
153 PF03961 DUF342: Protein of un 32.8 3.4E+02 0.0074 27.0 9.5 24 215-238 385-408 (451)
154 TIGR03007 pepcterm_ChnLen poly 32.7 3.5E+02 0.0076 26.8 9.5 37 158-199 157-193 (498)
155 PF06818 Fez1: Fez1; InterPro 32.6 2.3E+02 0.005 26.4 7.7 65 182-246 32-100 (202)
156 PRK09039 hypothetical protein; 32.6 4.8E+02 0.01 25.4 11.7 17 222-238 168-184 (343)
157 PF09311 Rab5-bind: Rabaptin-l 32.3 33 0.00072 30.3 2.2 61 179-239 20-84 (181)
158 COG1792 MreC Cell shape-determ 32.1 1.2E+02 0.0026 28.9 6.0 38 192-229 70-107 (284)
159 PF14645 Chibby: Chibby family 32.1 53 0.0011 27.6 3.2 26 179-204 69-94 (116)
160 PF09006 Surfac_D-trimer: Lung 32.0 98 0.0021 22.7 4.1 21 185-205 3-23 (46)
161 PRK10884 SH3 domain-containing 31.9 2.8E+02 0.006 25.5 8.1 28 213-240 140-167 (206)
162 COG5281 Phage-related minor ta 31.9 3E+02 0.0064 30.7 9.5 33 203-238 528-560 (833)
163 KOG4083 Head-elevated expressi 31.8 84 0.0018 29.1 4.6 19 224-242 99-117 (192)
164 COG4467 Regulator of replicati 31.7 57 0.0012 27.9 3.3 35 179-213 20-54 (114)
165 cd00179 SynN Syntaxin N-termin 31.7 2.9E+02 0.0062 22.6 10.4 61 140-211 25-93 (151)
166 KOG0161 Myosin class II heavy 31.6 7.4E+02 0.016 30.3 13.1 83 134-216 1357-1442(1930)
167 PF10212 TTKRSYEDQ: Predicted 31.2 5.1E+02 0.011 27.4 10.7 21 179-199 439-459 (518)
168 PF10018 Med4: Vitamin-D-recep 31.2 2.2E+02 0.0047 25.2 7.1 50 189-238 3-55 (188)
169 PF09726 Macoilin: Transmembra 31.2 3.4E+02 0.0073 29.4 9.6 30 217-246 550-579 (697)
170 PF07888 CALCOCO1: Calcium bin 30.9 6.8E+02 0.015 26.7 11.9 37 179-215 190-226 (546)
171 PF15112 DUF4559: Domain of un 30.4 5.5E+02 0.012 25.4 10.4 62 136-198 161-249 (307)
172 COG0264 Tsf Translation elonga 30.4 37 0.0008 33.2 2.3 27 59-85 23-49 (296)
173 PF07989 Microtub_assoc: Micro 30.1 2.7E+02 0.0058 21.7 8.5 22 219-240 50-71 (75)
174 TIGR03007 pepcterm_ChnLen poly 30.0 5.6E+02 0.012 25.4 11.3 57 183-239 326-382 (498)
175 PF04111 APG6: Autophagy prote 29.4 5.2E+02 0.011 24.9 9.9 28 179-206 55-82 (314)
176 PLN02320 seryl-tRNA synthetase 29.3 4E+02 0.0086 27.9 9.5 57 183-240 102-158 (502)
177 PF11544 Spc42p: Spindle pole 29.0 3E+02 0.0065 22.1 6.8 52 192-246 2-53 (76)
178 PRK09458 pspB phage shock prot 28.9 1.1E+02 0.0024 24.4 4.3 36 205-240 22-63 (75)
179 PF14193 DUF4315: Domain of un 28.9 1.1E+02 0.0025 24.5 4.5 36 206-246 19-54 (83)
180 PF01486 K-box: K-box region; 28.1 1.7E+02 0.0036 23.2 5.3 26 179-204 73-98 (100)
181 PF12999 PRKCSH-like: Glucosid 28.0 4.4E+02 0.0095 24.0 8.5 18 222-239 156-173 (176)
182 PF07445 priB_priC: Primosomal 28.0 57 0.0012 28.9 2.9 53 190-242 72-125 (173)
183 PRK11459 multidrug resistance 27.6 6.1E+02 0.013 25.1 11.7 96 151-246 368-465 (478)
184 TIGR02976 phageshock_pspB phag 27.6 1.2E+02 0.0026 23.9 4.3 25 216-240 39-63 (75)
185 PF14662 CCDC155: Coiled-coil 27.1 5.1E+02 0.011 24.0 9.3 29 217-245 65-93 (193)
186 PF12781 AAA_9: ATP-binding dy 27.0 1.1E+02 0.0024 28.1 4.6 39 197-241 157-195 (228)
187 PHA02562 46 endonuclease subun 26.9 6.4E+02 0.014 25.1 11.6 53 153-205 260-323 (562)
188 PF10211 Ax_dynein_light: Axon 26.9 4.6E+02 0.01 23.5 12.2 17 220-236 171-187 (189)
189 PF11180 DUF2968: Protein of u 26.6 4.9E+02 0.011 24.1 8.7 81 157-246 83-181 (192)
190 PF06120 Phage_HK97_TLTM: Tail 26.6 4.3E+02 0.0094 25.9 8.8 86 136-223 57-162 (301)
191 PRK11677 hypothetical protein; 26.5 97 0.0021 26.9 4.0 15 220-234 37-51 (134)
192 KOG4571 Activating transcripti 26.4 2.1E+02 0.0046 28.1 6.6 32 179-210 260-292 (294)
193 PRK15354 type III secretion sy 26.3 5.7E+02 0.012 24.3 10.2 37 134-170 20-64 (224)
194 KOG3647 Predicted coiled-coil 26.2 5.7E+02 0.012 25.4 9.4 100 134-238 74-191 (338)
195 PF09006 Surfac_D-trimer: Lung 26.2 1E+02 0.0022 22.5 3.4 16 224-239 4-19 (46)
196 PRK10920 putative uroporphyrin 26.1 3.5E+02 0.0076 27.3 8.3 62 179-246 65-126 (390)
197 PF11932 DUF3450: Protein of u 26.0 2.7E+02 0.0058 25.5 7.0 57 179-245 47-103 (251)
198 KOG2129 Uncharacterized conser 25.6 2.8E+02 0.0061 29.0 7.5 14 220-233 144-157 (552)
199 PLN03025 replication factor C 25.5 76 0.0017 29.7 3.4 50 26-79 147-203 (319)
200 PF05546 She9_MDM33: She9 / Md 25.5 5.7E+02 0.012 24.0 11.1 80 151-232 46-138 (207)
201 KOG2991 Splicing regulator [RN 25.5 3.4E+02 0.0075 26.7 7.8 57 179-238 113-169 (330)
202 PRK14011 prefoldin subunit alp 25.4 72 0.0016 27.8 3.0 25 217-241 1-25 (144)
203 PRK14127 cell division protein 25.4 89 0.0019 26.3 3.4 22 218-239 50-71 (109)
204 KOG0977 Nuclear envelope prote 25.1 8.3E+02 0.018 26.0 11.0 31 216-246 152-182 (546)
205 KOG0241 Kinesin-like protein [ 25.1 2.1E+02 0.0045 33.1 6.9 70 184-267 367-437 (1714)
206 PF03980 Nnf1: Nnf1 ; InterPr 24.9 2.3E+02 0.005 22.6 5.7 37 171-207 70-106 (109)
207 PRK04863 mukB cell division pr 24.9 1E+03 0.022 28.3 12.6 89 153-241 353-457 (1486)
208 PRK10803 tol-pal system protei 24.9 3.2E+02 0.0069 25.6 7.4 17 179-195 66-82 (263)
209 PF04803 Cor1: Cor1/Xlr/Xmr co 24.8 2.1E+02 0.0045 24.6 5.6 29 217-245 87-115 (130)
210 TIGR01730 RND_mfp RND family e 24.7 3.6E+02 0.0078 24.3 7.5 20 220-239 110-129 (322)
211 PRK12704 phosphodiesterase; Pr 24.7 8E+02 0.017 25.5 13.1 88 153-241 33-132 (520)
212 KOG4797 Transcriptional regula 24.6 1.4E+02 0.0031 25.7 4.5 32 170-202 64-95 (123)
213 PF15188 CCDC-167: Coiled-coil 24.5 3.4E+02 0.0073 22.0 6.4 27 217-243 41-67 (85)
214 COG4567 Response regulator con 24.4 65 0.0014 29.4 2.6 25 57-81 145-169 (182)
215 PF15463 ECM11: Extracellular 24.3 2.5E+02 0.0054 23.8 6.0 61 134-195 69-133 (139)
216 KOG4343 bZIP transcription fac 24.3 2E+02 0.0043 30.9 6.3 45 157-201 297-343 (655)
217 PF00517 GP41: Retroviral enve 24.1 3.3E+02 0.0071 24.7 7.1 42 199-240 15-60 (204)
218 PF10267 Tmemb_cc2: Predicted 24.1 4.7E+02 0.01 26.6 8.7 46 191-239 272-318 (395)
219 PF06034 DUF919: Nucleopolyhed 24.0 2.9E+02 0.0064 21.2 5.7 44 184-229 4-48 (62)
220 PRK00888 ftsB cell division pr 23.9 2.5E+02 0.0055 22.9 5.8 19 180-198 33-51 (105)
221 PF12128 DUF3584: Protein of u 23.9 8.2E+02 0.018 27.8 11.4 22 219-240 469-490 (1201)
222 PF09728 Taxilin: Myosin-like 23.8 6.7E+02 0.014 24.2 10.9 59 179-240 242-300 (309)
223 COG2959 HemX Uncharacterized e 23.6 5.4E+02 0.012 26.3 9.0 58 182-239 64-124 (391)
224 PF07412 Geminin: Geminin; In 23.6 2.3E+02 0.005 26.4 6.0 46 179-231 123-168 (200)
225 KOG4077 Cytochrome c oxidase, 23.5 76 0.0017 28.2 2.8 27 55-81 83-111 (149)
226 PF11236 DUF3037: Protein of u 23.1 77 0.0017 26.2 2.6 24 44-67 38-61 (118)
227 PF02268 TFIIA_gamma_N: Transc 22.9 79 0.0017 23.2 2.4 27 145-173 20-46 (49)
228 COG1579 Zn-ribbon protein, pos 22.8 6.6E+02 0.014 23.8 9.9 59 180-238 109-168 (239)
229 PF06667 PspB: Phage shock pro 22.8 1.7E+02 0.0036 23.2 4.3 23 218-240 41-63 (75)
230 PRK10328 DNA binding protein, 22.7 3.1E+02 0.0068 23.7 6.3 32 206-237 36-67 (134)
231 PF05055 DUF677: Protein of un 22.6 7.6E+02 0.016 24.4 11.5 68 179-246 255-322 (336)
232 PF07200 Mod_r: Modifier of ru 22.5 4.6E+02 0.0099 21.8 9.0 30 179-208 53-82 (150)
233 PRK05564 DNA polymerase III su 22.4 83 0.0018 29.3 3.0 50 26-79 141-193 (313)
234 PRK06975 bifunctional uroporph 22.3 6.1E+02 0.013 26.9 9.6 64 179-242 344-408 (656)
235 KOG3850 Predicted membrane pro 22.3 8.5E+02 0.018 25.3 10.1 35 199-239 84-118 (455)
236 smart00338 BRLZ basic region l 22.2 1.9E+02 0.0041 21.1 4.3 43 204-246 15-60 (65)
237 PF04375 HemX: HemX; InterPro 22.2 6.9E+02 0.015 24.5 9.4 23 219-241 100-122 (372)
238 PF10226 DUF2216: Uncharacteri 22.1 3.8E+02 0.0081 25.0 7.0 67 179-246 67-135 (195)
239 KOG4643 Uncharacterized coiled 22.0 8.4E+02 0.018 28.3 10.7 28 191-218 460-487 (1195)
240 COG5185 HEC1 Protein involved 22.0 6.2E+02 0.013 27.0 9.2 85 145-229 291-385 (622)
241 PF04977 DivIC: Septum formati 21.9 2.7E+02 0.0058 20.3 5.1 25 214-238 26-50 (80)
242 PF10241 KxDL: Uncharacterized 21.9 3.7E+02 0.008 21.2 6.2 21 219-239 57-77 (88)
243 KOG1937 Uncharacterized conser 21.8 3.1E+02 0.0067 28.9 7.0 41 204-244 454-494 (521)
244 PF07544 Med9: RNA polymerase 21.8 1.6E+02 0.0035 23.0 4.1 54 179-235 26-82 (83)
245 TIGR01843 type_I_hlyD type I s 21.7 6.8E+02 0.015 23.6 10.6 21 217-237 208-228 (423)
246 PF08679 DsrD: Dissimilatory s 21.6 94 0.002 24.4 2.6 23 44-66 22-44 (67)
247 TIGR02977 phageshock_pspA phag 21.6 6E+02 0.013 22.9 13.9 23 134-158 23-45 (219)
248 PF08581 Tup_N: Tup N-terminal 21.3 4.2E+02 0.0091 21.0 8.4 12 228-239 59-70 (79)
249 PRK00409 recombination and DNA 21.2 1.1E+03 0.024 25.8 12.0 6 51-56 417-422 (782)
250 PF03938 OmpH: Outer membrane 20.8 4.9E+02 0.011 21.5 9.5 7 141-147 25-31 (158)
251 PRK14127 cell division protein 20.8 1.9E+02 0.0042 24.3 4.6 28 213-240 38-65 (109)
252 PF04899 MbeD_MobD: MbeD/MobD 20.7 4.1E+02 0.009 20.7 7.8 38 163-201 11-48 (70)
253 PF15035 Rootletin: Ciliary ro 20.7 6.2E+02 0.014 22.7 8.1 25 179-203 79-103 (182)
254 PF14915 CCDC144C: CCDC144C pr 20.6 6.5E+02 0.014 25.0 8.7 68 179-246 4-76 (305)
255 PF04003 Utp12: Dip2/Utp12 Fam 20.4 4.2E+02 0.0091 20.6 6.6 48 199-246 55-104 (110)
256 KOG4196 bZIP transcription fac 20.4 1.4E+02 0.003 26.3 3.7 23 179-201 79-101 (135)
257 KOG2751 Beclin-like protein [S 20.3 4.5E+02 0.0098 27.3 7.8 62 185-246 147-210 (447)
258 PF07412 Geminin: Geminin; In 20.3 3E+02 0.0066 25.6 6.1 25 179-203 130-154 (200)
259 PRK09841 cryptic autophosphory 20.2 8E+02 0.017 26.2 10.0 9 69-77 99-107 (726)
260 PF14775 NYD-SP28_assoc: Sperm 20.1 3.8E+02 0.0083 20.0 5.8 15 217-231 45-59 (60)
261 cd07685 F-BAR_Fes The F-BAR (F 20.1 6.2E+02 0.014 24.2 8.2 49 188-239 98-148 (237)
262 KOG4378 Nuclear protein COP1 [ 20.1 2.6E+02 0.0057 29.9 6.2 46 155-200 623-669 (673)
263 KOG4286 Dystrophin-like protei 20.0 1.9E+02 0.0041 32.2 5.3 55 200-262 193-248 (966)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=98.86 E-value=2e-08 Score=103.16 Aligned_cols=120 Identities=24% Similarity=0.240 Sum_probs=104.7
Q ss_pred CChhhhHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHhhhhh-h--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 023249 134 TDGSKWVDLFVHEMMSAA-DLDDARGRAARILEVFERSIITNSKA-S--KELEHASLKEHLQSLLNDNQILKKAVSIQHE 209 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sAs-d~dDARaRAsRvLEafEKsI~~rs~a-a--~~kEn~~LKe~l~~l~~eN~iLKRAvaIQhe 209 (285)
-.|-.+|.-|+.|.+..- ...+...|..+.++..|+.+...+.. + +..|..+||..++.|..+...|+++++.+++
T Consensus 307 qe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 307 QEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777666665544 47888889999999999997766544 3 7789999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHhh
Q 023249 210 RHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAH 261 (285)
Q Consensus 210 R~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~ 261 (285)
...+++.+.|++.++++++.+||+|||+|..+||++. .||.+.+
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaak--------t~L~q~~ 430 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAK--------TQLEQSP 430 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHhCh
Confidence 9999999999999999999999999999999999999 9988764
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.25 E-value=1.4e-06 Score=59.86 Aligned_cols=38 Identities=42% Similarity=0.655 Sum_probs=34.6
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
.+..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.21 E-value=1.9e-06 Score=59.18 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
..++.|+.+||++++..++.+|++|++|+|.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35789999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.26 E-value=0.00043 Score=48.43 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=32.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL 77 (285)
+++-|..+||+..+.+||.+|+.|+.|+-.||+-+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.015 Score=45.89 Aligned_cols=67 Identities=31% Similarity=0.400 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 162 RvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
.|||-+|.-|.+..-. + +|.|...|||.-..|..|-. ..||.| +...+|-.+||+--..+||+||+|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q------~~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ------NAQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555 3 99999999998877776643 346666 788899999999999999999987
No 6
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.26 E-value=0.057 Score=43.09 Aligned_cols=67 Identities=28% Similarity=0.361 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 162 RvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
-+|+-+|.=|-+..-. + +++|...||++-..|..++.-+ .+.| ++.++|.++||+--..+|++||.|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~------~~~r----~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA------QHQR----EELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777667665555 4 9999999999999888887654 3455 678889999999999999999987
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.38 E-value=0.028 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL 77 (285)
..|..|..+ +.++....+||..||||++.||.-|
T Consensus 4 ~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 357889999 9999999999999999999999865
No 8
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=93.41 E-value=1.5 Score=38.66 Aligned_cols=82 Identities=28% Similarity=0.306 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhHhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023249 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQ-KEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 161 sRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQhe-R~~e~e~-~~~El~~Lkqlv~qYQEqir~L 238 (285)
=+|||.+|.++..+-.. +-|...||+..+.|..+..- ++...-|-+ +..++++ -.+|.+.|...|.+.|++.|.|
T Consensus 32 V~vLE~Le~~~~~n~~~--~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH--EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999888876644 33555666666666655543 333333333 3334444 4468888888999999999999
Q ss_pred H--Hhcccc
Q 023249 239 E--MKIRIL 245 (285)
Q Consensus 239 E--~nNYaL 245 (285)
+ ..||+-
T Consensus 109 ~~~~~~~~~ 117 (158)
T PF09744_consen 109 ELKLKNLSD 117 (158)
T ss_pred HHHhhhhhh
Confidence 9 345544
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.39 E-value=1.1 Score=34.84 Aligned_cols=60 Identities=32% Similarity=0.431 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 162 RvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
.+|+-+|.=|.+..-. + ++.|+..||++...|..+|.-|++ |.++||+--.++++.|+.|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~-----------------en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKE-----------------ENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 4566777777665555 3 888888888887777766655543 4444555555555555543
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.83 E-value=0.78 Score=41.45 Aligned_cols=64 Identities=33% Similarity=0.397 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE-----------KEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~-----------~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
++-|...|+.+++.+..||.+||+.=.-|-.....|++.+ .|+..||..+-.||++.|++|...
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999997666666666676544 377777777777777777776543
No 11
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=92.05 E-value=0.81 Score=38.12 Aligned_cols=48 Identities=33% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 189 ~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+-..|-.+|.|||+||. |.+.+ ...|+.-+-+....||++|.-|.+|+
T Consensus 6 eYsKLraQ~~vLKKaVi-------eEQ~k---~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVI-------EEQAK---NAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999997 22222 23445577778888888888888888
No 12
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=91.70 E-value=0.35 Score=31.65 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL 77 (285)
.+.+|..+ +.+++-...+|..||+|++.|+.-|
T Consensus 4 ~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 4 KIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778887 7889999999999999999998765
No 13
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=91.33 E-value=0.42 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=28.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
.+.+|..+ +.+.+.+..||+.|++|++.|+.-|.
T Consensus 4 ~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 46777776 67799999999999999999998764
No 14
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=88.40 E-value=0.75 Score=37.75 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR 210 (285)
.++|+..|+.++..|..||.|||+|.+|=..|
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 67889999999999999999999999885544
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.88 E-value=3.7 Score=37.53 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQH---ERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQh---eR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+++|...||.++..+-.+.. .+.--+|. ++.+...+...|.++|++.+.+-|.+++.||..|-.+.
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777766644 11111222 23344445667888888899999999999998888776
No 16
>PF15058 Speriolin_N: Speriolin N terminus
Probab=86.74 E-value=0.62 Score=42.82 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 023249 181 LEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
.||+.||+++ +|++||+-||||
T Consensus 19 ~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 19 RENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHH
Confidence 4677777666 466777777777
No 17
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.01 E-value=16 Score=35.19 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHhhHhHHHHHHHHHHHH
Q 023249 152 DLDDARGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILK----KAVSIQHERHLEQEQKEKEVELLK 225 (285)
Q Consensus 152 d~dDARaRAsRvLEafEKsI~~rs~a--a~~kEn~~LKe~l~~l~~eN~iLK----RAvaIQheR~~e~e~~~~El~~Lk 225 (285)
+.+........-|+.+|+-..+-... .+++|...|.+++..+..|-.-|+ +-....|.-+.++.+...|++.++
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444443333333 155555555555555554444443 223333344444556667888888
Q ss_pred HHHHHHHHHHHHHHHhc
Q 023249 226 LVISQYQDQARNLEMKI 242 (285)
Q Consensus 226 qlv~qYQEqir~LE~nN 242 (285)
..+...++|+.+|+..|
T Consensus 120 ~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 120 NQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88888889999888766
No 18
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.17 E-value=9.4 Score=30.35 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhh-hhh-------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 023249 164 LEVFERSIITNS-KAS-------KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (285)
Q Consensus 164 LEafEKsI~~rs-~aa-------~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqi 235 (285)
.|.|.+++..|. ... +.++...++.+++.|..+-..+-+.|+.--.-..+.++...|+..+|..+..+++++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888774 221 677888888888888888888877776654444578888889999999999999999
Q ss_pred HHHHHhccc
Q 023249 236 RNLEMKIRI 244 (285)
Q Consensus 236 r~LE~nNYa 244 (285)
+.+|..=+.
T Consensus 91 ~~~e~~l~~ 99 (108)
T PF02403_consen 91 KELEEELNE 99 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998875443
No 19
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.49 E-value=9.4 Score=39.28 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHh
Q 023249 179 KELEHASLKEHLQSLLN 195 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~ 195 (285)
+.+||+.||++.++|.+
T Consensus 78 l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 78 LISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 20
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.42 E-value=5.4 Score=36.69 Aligned_cols=63 Identities=30% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcccc
Q 023249 182 EHASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEV--------ELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAvaIQh-eR~~e~e~~~~El--------~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
|+.+||+-.++|..||.=|+-.-.+.- .|||--. ..+|- .-+++-|.+||.+|+.||..--.|
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988777664 3554332 23333 345778999999999987654443
No 21
>PHA02047 phage lambda Rz1-like protein
Probab=82.76 E-value=4.6 Score=33.69 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 201 KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 201 KRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|+..|=|++-+.. ...+.+++..+..||+||..||.+--.-+
T Consensus 26 ~r~~g~~h~~a~~l---a~qLE~a~~r~~~~Q~~V~~l~~kae~~t 68 (101)
T PHA02047 26 YRALGIAHEEAKRQ---TARLEALEVRYATLQRHVQAVEARTNTQR 68 (101)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777878876444 44788888899999999999998844444
No 22
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=81.60 E-value=14 Score=32.09 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~-~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+..-+..++.+-..+..-|+-|.++ .++-++...++. ..+++.+...++.+.+.+|+.|...|-.|+
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 5556666677777777777777766 666666555555 446889999999999999999999998876
No 23
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.14 E-value=26 Score=28.02 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=64.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 150 AADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 150 Asd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
...+++|-.|=.+.|..||++|..|-.. ..+ ...+.+.++.|-.+..-|-..+--.-.|....+..++|+.+ -+.
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~-~~~-~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~---rL~ 77 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLER-DRK-RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR---RLD 77 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH
Confidence 4568899999999999999999998776 111 25566777788888888888888888888888888888877 666
Q ss_pred HHHHHHHH
Q 023249 230 QYQDQARN 237 (285)
Q Consensus 230 qYQEqir~ 237 (285)
--.|.||.
T Consensus 78 ~a~e~Ir~ 85 (89)
T PF13747_consen 78 SAIETIRA 85 (89)
T ss_pred HHHHHHHH
Confidence 66777765
No 24
>PRK11637 AmiB activator; Provisional
Probab=80.09 E-value=59 Score=31.97 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=4.7
Q ss_pred HhcCCCchH
Q 023249 147 MMSAADLDD 155 (285)
Q Consensus 147 M~sAsd~dD 155 (285)
+.++.++++
T Consensus 145 Ll~a~~~~~ 153 (428)
T PRK11637 145 ILSGEESQR 153 (428)
T ss_pred HhcCCChhH
Confidence 345666544
No 25
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=78.20 E-value=3.3 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.4
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+|.++..+- +.++..-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345555555 568999999999999999999988765
No 26
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.22 E-value=27 Score=36.04 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+.+|...|..+-+.|+.||.-||+
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666654
No 27
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=77.21 E-value=16 Score=35.11 Aligned_cols=50 Identities=30% Similarity=0.278 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHhhHhHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK----AVSIQHERHLEQEQKEKEVELLKLVI 228 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR----AvaIQheR~~e~e~~~~El~~Lkqlv 228 (285)
+..|.+-|-|+-+.|..||..|.+ .++-||+--.+++..++||..|||.+
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 555677777777778888877754 58889999999999999999998864
No 28
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=76.63 E-value=35 Score=30.51 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHH---HHH---HHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHH----H
Q 023249 136 GSKWVDLFVHEMMSAADLDDARGRAARIL---EVF---ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAV----S 205 (285)
Q Consensus 136 g~eWVEl~V~EM~sAsd~dDARaRAsRvL---Eaf---EKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAv----a 205 (285)
--+|++++.+...+.-.+.|-+.+..==| +.+ +..+.+|-. -+......+.++++.|-+.-..+-.-| .
T Consensus 42 dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~-lLe~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 42 DLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFE-QLEAQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44899999999999999999988663111 000 001111100 022333333334433333222222222 2
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 023249 206 IQHERHLEQEQKEKEVELLKLVISQYQD 233 (285)
Q Consensus 206 IQheR~~e~e~~~~El~~Lkqlv~qYQE 233 (285)
.||.| |.|++...++.|.+.+++-++
T Consensus 121 l~hr~--e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 121 LQHRR--EMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHhHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 47776 888999999999999988443
No 29
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.21 E-value=20 Score=34.93 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV-------SIQHERHLEQE-QKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv-------aIQheR~~e~e-~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+.-+..-|+.++..|..+|+-|+--+ --||...-..+ ....++.|++.++.|.++.||.||+.|.-|-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44445556666666666776665433 22222211111 2335899999999999999999999998775
No 30
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=2.7 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=29.6
Q ss_pred cCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 023249 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 50 lFP~md~qvle~aLe~cgndlDaAIksL~~L~ 81 (285)
+||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 79999999999999998889999999987765
No 31
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=75.46 E-value=31 Score=28.18 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIR 243 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNY 243 (285)
+..||+...+.+..--.-|.-|+..+.+.+.-. ++..+.-+++++--.+++|+||+...+|-
T Consensus 30 L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~---~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 30 LRAENKAQAQTIQQQEDANQELKAQLQQNRQAV---EEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 555666666666666666777777665443332 33344456777799999999999877664
No 32
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=74.67 E-value=2.1 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.2
Q ss_pred HHhcCC-CCCHHHHHHHHhhchhhHH
Q 023249 47 LLQMFP-DVDPEVVKSVLGEHDNKIE 71 (285)
Q Consensus 47 L~~lFP-~md~qvle~aLe~cgndlD 71 (285)
|.+.|| -|++++.|+.+..||||+=
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~i 29 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDII 29 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccchh
Confidence 789999 8999999999999999973
No 33
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.42 E-value=26 Score=31.68 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+..||..|++-|..+..|+.-|++-+.- +++ -...++.+|..+...+++++.|+..+-+|.
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~-y~k------dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~ 113 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN-YEK------DKQSLQNLKARLKELEKELKDLKWEHEVLE 113 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655441 222 223455566666666666666666655554
No 34
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=74.24 E-value=57 Score=30.11 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH----HHHHHHHHHHHH
Q 023249 161 ARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE----KEVELLKLVISQ 230 (285)
Q Consensus 161 sRvLEafEKsI~~rs~a-a-----~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~----~El~~Lkqlv~q 230 (285)
..+.+.|||.|...... . .+.+...+......+..+-.-+-++|.=.|.|..-+.+.. .-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999988886665 1 3334444445555566666678899998888875444322 222457889999
Q ss_pred HHHHHHHHHHhccccc
Q 023249 231 YQDQARNLEMKIRILN 246 (285)
Q Consensus 231 YQEqir~LE~nNYaL~ 246 (285)
|.+.|+..|..--+|.
T Consensus 123 y~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 123 YEERLKKEEQRYQALK 138 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888888
No 35
>PF15058 Speriolin_N: Speriolin N terminus
Probab=74.04 E-value=7.9 Score=35.77 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
.+-|.+|+++|.+||.=||+-|.. -+|-+.||.++.+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL-----------irEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL-----------IRENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 356889999999999999998853 2455666766544
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.66 E-value=60 Score=36.59 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH------------------HHHHHHHhhHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK------------------AVSIQHERHLE 213 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR------------------AvaIQheR~~e 213 (285)
+|.|..+|||+++.|-.|--|||- =+-+||.|.||
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHH
Confidence 999999999999999998888884 24577777665
No 37
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.37 E-value=29 Score=30.26 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVK 258 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~ 258 (285)
-++|...|++++..+..+..-|. .|+.....|...|.+.+.+-|++|..||..|..+. -||+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~----------~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~--------~~l~ 111 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLE----------LELDTLRSEKENLDKELQKKQEKVSELESLNSSLE--------NLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHH
Confidence 45566667777776666655543 24445556777888888889999999999998888 6766
Q ss_pred Hhhh
Q 023249 259 IAHQ 262 (285)
Q Consensus 259 ~A~q 262 (285)
...+
T Consensus 112 ~~E~ 115 (140)
T PF10473_consen 112 EKEQ 115 (140)
T ss_pred HHHH
Confidence 5543
No 38
>PRK09039 hypothetical protein; Validated
Probab=72.34 E-value=84 Score=30.62 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHHHHH--HHHHHhhhhh--h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH-----HH
Q 023249 151 ADLDDARGRAARILEVF--ERSIITNSKA--S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE-----KE 220 (285)
Q Consensus 151 sd~dDARaRAsRvLEaf--EKsI~~rs~a--a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~-----~E 220 (285)
.....+..|+...=+.+ +|.+.+.+.+ . ++.|.+.||+|+..|-.+-..++.--.-++.+..+++.+- ++
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~ 188 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQR 188 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666654433 2333333333 1 7777777777777777777777666666666666555432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 221 VELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 221 l~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++.|.+.-.++-.++|..-.+++.++
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~ir 214 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIR 214 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcE
Confidence 44444444444444475555544333
No 39
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.83 E-value=85 Score=28.71 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL 223 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~ 223 (285)
+..|...|+.+++.|...|.-|++-|.-|+....+.+.+..++..
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999988888776655543
No 40
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=70.32 E-value=17 Score=28.36 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhc
Q 023249 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAHQN 263 (285)
Q Consensus 207 QheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~q~ 263 (285)
-..|.++.+.+++++.+|++..-+-+--++.|+..-+.+. +|++.++++
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~--------l~vQlt~Ek 73 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDE--------LNVQLTQEK 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH--------HhHHHHHHh
Confidence 5678899999999999999999888899999999999999 999988654
No 41
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.95 E-value=72 Score=29.34 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 192 ~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
.+.+||..||+=++....+..++++..+|.++||+++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444445555556666666654
No 42
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=67.49 E-value=4.2 Score=27.74 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 54 md~qvle~aLe~cgndlDaAIksL~ 78 (285)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999998875
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=67.14 E-value=1.4e+02 Score=31.66 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 023249 143 FVHEMMSAADLDDARGRAARILEVFERSIIT 173 (285)
Q Consensus 143 ~V~EM~sAsd~dDARaRAsRvLEafEKsI~~ 173 (285)
++.++.+....+.+..++..+...++.-+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776666665544
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.09 E-value=28 Score=28.87 Aligned_cols=32 Identities=34% Similarity=0.327 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR 210 (285)
+..|...||.++..|+.||+-|+.=-.--.+|
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999887543333333
No 45
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.92 E-value=86 Score=31.03 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 161 ARILEVFERSIITNSKA---SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (285)
Q Consensus 161 sRvLEafEKsI~~rs~a---a~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~ 237 (285)
.+-++..++.+.+-... ....|...+..+.+.|..+-..+|.-+..=.+++.++.+.++|++-.+++..+|-.+.+.
T Consensus 319 ~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 319 EAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555555 155567888999999999999999999999999999999999999999999999888887
Q ss_pred HHHhc
Q 023249 238 LEMKI 242 (285)
Q Consensus 238 LE~nN 242 (285)
+...-
T Consensus 399 ~~~~~ 403 (458)
T COG3206 399 LSIQE 403 (458)
T ss_pred HHHhh
Confidence 76554
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.69 E-value=78 Score=26.65 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH----HHHH----
Q 023249 153 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE----KEVE---- 222 (285)
Q Consensus 153 ~dDARaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~----~El~---- 222 (285)
|-.-|.|-.+..|.++.-+..-.+. . ++..+..||++++.+-++...++.-..--....+..+... .|++
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888777765444 2 4445555555555555544443322222111111111111 1333
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 023249 223 LLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 223 ~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.+.+.-.||.-.+|.-|...-.|.
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666778888888776655544
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.59 E-value=80 Score=26.39 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK-----------EKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~-----------~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++.|...+++....+..+-.-++.=+.-|+.+-++.+.+ .++++.||.-+..++.++..|+..-.+..
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666665554432 35788888888888888888887776666
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.74 E-value=54 Score=34.76 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRI 244 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYa 244 (285)
++.|.+.--++++.|..+|.=||.-|..|.-=-.|.+.+++|+.+|++-|..-+-++-.|-..-+-
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666788999999999999999997777788888888888888877666555555443333
No 49
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.41 E-value=49 Score=31.77 Aligned_cols=98 Identities=29% Similarity=0.385 Sum_probs=65.4
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH----------
Q 023249 134 TDGSKWVDLFVHEMMSAADLDDARGRAAR---ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL---------- 200 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsR---vLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iL---------- 200 (285)
..|+.--++|=+|+ ++-++|.+|.+ =+..+||+|.+.... ...+...++.++..+..+..-|
T Consensus 131 ~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~ai~~-~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 131 QRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEAIKA-VQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998 66777777654 145588888876555 6666677777777766665443
Q ss_pred -----HHHHHHHHHh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 201 -----KKAVSIQHER---HLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 201 -----KRAvaIQheR---~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
||-=..|+-| +-|||....||+. +-..|=++.|.|+
T Consensus 206 LER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 206 LERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHH
Confidence 3444444444 2355555556555 7777888887765
No 50
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=63.81 E-value=35 Score=33.89 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLV----------ISQYQDQARNLE 239 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~--e~e~~~~El~~Lkql----------v~qYQEqir~LE 239 (285)
+|--|-.|+.|++.-..||.||-+. .||| |.|...|-+++|... |-.||-|+..|-
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~eln 72 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELN 72 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999885 4665 555566666666543 456776665443
No 51
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=63.44 E-value=20 Score=33.97 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
+++||+.||+++..+..+-.. .+++..+|.++||+++.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~-------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEI-------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 678888888877766222111 12335566777776553
No 52
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.07 E-value=40 Score=33.14 Aligned_cols=69 Identities=29% Similarity=0.279 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------HHhhHh---HH--------------HHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQ-------------HERHLE---QE--------------QKEKEVELLKLVI 228 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQ-------------heR~~e---~e--------------~~~~El~~Lkqlv 228 (285)
+..|..+|++.+..+..||.+|+.-++-| |+|.+- +| ...-|.+.++.--
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888766654 444321 11 1112566666677
Q ss_pred HHHHHHHHHHH-Hhcccccc
Q 023249 229 SQYQDQARNLE-MKIRILNG 247 (285)
Q Consensus 229 ~qYQEqir~LE-~nNYaL~~ 247 (285)
+-|+.++.+|- .=||.|+|
T Consensus 164 D~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 77888888772 23788885
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.13 E-value=1.5e+02 Score=28.38 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhccccccccccch
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE-----MKIRILNGISEMGS 253 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE-----~nNYaL~~~~~~~~ 253 (285)
.+.|...||++|..+-.+..-+|+-+.-..... +....++..++....+++++|+.+| ...|+-.-|.+.-.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el---~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEEL---EELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 556788888888888888888887766544444 4455566666778888888888876 44555554555555
Q ss_pred HHHHHHhh
Q 023249 254 QILVKIAH 261 (285)
Q Consensus 254 ~~hL~~A~ 261 (285)
.+..=+..
T Consensus 284 ~~~~Le~~ 291 (325)
T PF08317_consen 284 KVDALEKL 291 (325)
T ss_pred HHHHHHHH
Confidence 55544443
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=61.10 E-value=2e+02 Score=30.60 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL 223 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~ 223 (285)
.+.+...+++++..+-.+-.-|++-+.--+.+.++++...+++..
T Consensus 211 ~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~ 255 (880)
T PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET 255 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555555555554444555555444433333
No 55
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=61.04 E-value=76 Score=24.62 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh-------hHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 186 LKEHLQSLLNDNQILKKAVSIQHER-------HLEQEQKE-KEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 186 LKe~l~~l~~eN~iLKRAvaIQheR-------~~e~e~~~-~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.-+++..|+.||.-||-|+.-=+.= ...+.+.+ .|..-++..+....+-|.+|...|
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4468889999999999888643322 22223333 355566666666666666665433
No 56
>CHL00098 tsf elongation factor Ts
Probab=60.73 E-value=6.3 Score=35.97 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
+-.||.. -+-.-.--.+||++||+|+|.||.-|..--+..+
T Consensus 5 ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a 45 (200)
T CHL00098 5 VKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGLASA 45 (200)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 4445544 3334445689999999999999999988544444
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.70 E-value=64 Score=27.75 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRI 244 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYa 244 (285)
+..|...|++++..+..++.-|+--++.-..... -++...++.+|++-+.++++++..|..+.--
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3344555556666666666555544444333332 2446667888888888888888888774433
No 58
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.49 E-value=12 Score=39.36 Aligned_cols=50 Identities=30% Similarity=0.333 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhh-h---hhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhhH
Q 023249 163 ILEVFERSIITNSKA-S---KELEH-ASLKEHLQSLLNDNQILKKAVSIQHERHL 212 (285)
Q Consensus 163 vLEafEKsI~~rs~a-a---~~kEn-~~LKe~l~~l~~eN~iLKRAvaIQheR~~ 212 (285)
||.-..+.|..|-.| + .+||. .-|+-.|++|+.||.+||+-=+---.|.-
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566666677777666 3 44443 34666677777777777664444444443
No 59
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.75 E-value=47 Score=27.90 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
+.+|...||.++..|+.||+-|+.-
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988753
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.72 E-value=56 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=9.8
Q ss_pred ccccccCCCCCCCCCCccccc
Q 023249 10 VGFEEICGSSSPTSAKRSRCS 30 (285)
Q Consensus 10 s~fedl~~s~~P~~sKR~Rcs 30 (285)
.+|-++..+= +| ..+.=|.
T Consensus 7 ViF~nV~~~Y-~P-~~~v~C~ 25 (546)
T PF07888_consen 7 VIFNNVAKSY-IP-GTDVECH 25 (546)
T ss_pred EEEecccccc-CC-CCCeEEE
Confidence 4677765553 23 3455553
No 61
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=58.46 E-value=7.1 Score=37.55 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.2
Q ss_pred HHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 58 vle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
--.+||++|++|+|.||+-|..--+..+
T Consensus 21 dCKkAL~e~~gDiekAi~~LRkkG~akA 48 (290)
T TIGR00116 21 DCKKALTEANGDFEKAIKNLRESGIAKA 48 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhchhHH
Confidence 3679999999999999999998544444
No 62
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=58.15 E-value=11 Score=31.91 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+.+..-..+||++|++||-.||..|..
T Consensus 88 gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 88 GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 445556788999999999999998753
No 63
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=57.96 E-value=98 Score=24.88 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 200 LKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+++.+.-=+.=.++...+..+++..-+.+++-.+||..||..-|.|.
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD 86 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELD 86 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666777777778888888888888877776
No 64
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=56.85 E-value=19 Score=32.71 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchH
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILNGISEMGSQ 254 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~ 254 (285)
++.++++.+.+|++|+.+++..=-+|+|+..+|.-
T Consensus 42 q~~q~~~q~~ql~~Q~~q~k~~y~sltG~r~~g~l 76 (220)
T TIGR02791 42 QMAALKTQYEQLSEQIEQYKQQYGSLTGNRGMGDL 76 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 45555555555555555555555567787777764
No 65
>PRK09377 tsf elongation factor Ts; Provisional
Probab=56.51 E-value=8 Score=37.20 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 57 EVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 57 qvle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
.--.+||++|++|+|.||+-|..--+..+
T Consensus 21 ~dCKkAL~e~~gD~ekAi~~Lrk~G~akA 49 (290)
T PRK09377 21 MDCKKALTEADGDIEKAIEWLRKKGLAKA 49 (290)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhchhhH
Confidence 34679999999999999999998444444
No 66
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=56.33 E-value=81 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.226 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 023249 223 LLKLVISQYQDQARNLEMKIR 243 (285)
Q Consensus 223 ~Lkqlv~qYQEqir~LE~nNY 243 (285)
.||.+=+=|.|||-.||..|-
T Consensus 145 el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 145 ELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456688889999999999873
No 67
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.24 E-value=1.2e+02 Score=31.65 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHH
Q 023249 161 ARILEVFERSIITNSKA-S-----KELEHASLKEHLQSL 193 (285)
Q Consensus 161 sRvLEafEKsI~~rs~a-a-----~~kEn~~LKe~l~~l 193 (285)
.-.+++..|++..+... . .++|.+.+||.-..|
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666776666555 1 455555555433333
No 68
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=56.23 E-value=8.4 Score=35.06 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=30.6
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
++-.||.. -+...---.+||++|++|+|.||+-|..--+..+
T Consensus 7 ~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a 48 (198)
T PRK12332 7 LVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAKA 48 (198)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHH
Confidence 45556655 3444455789999999999999999998544444
No 69
>PRK11637 AmiB activator; Provisional
Probab=56.07 E-value=2.1e+02 Score=28.17 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNL 238 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~L 238 (285)
++.+|++...+++.+|..|
T Consensus 234 ~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 234 QLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=55.74 E-value=1.6e+02 Score=33.54 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Q 023249 179 KELEHASLKEHLQSLLN-DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKI-RILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~-eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nN-YaL~ 246 (285)
+++|++.|.+++..|-. .|.+...+...|+++. ....+..+|+..+.+|+++|+.|+.++ ..|+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~----~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs 471 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE----HIEGEILQLRKKIENISEELKDLKKTKTDKVS 471 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 44445555555555543 3455556667777663 334568889999999999999998753 3344
No 71
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.92 E-value=65 Score=25.03 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
++.+|..|++....|..+|.-||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888
No 72
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=54.66 E-value=14 Score=31.57 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 34455567899999999999998774
No 73
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=54.28 E-value=72 Score=27.67 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 023249 163 ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKL 226 (285)
Q Consensus 163 vLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkq 226 (285)
+|..+||-+.+ ..|-+..+..||..||-|+.-= |--|++-.+.+.-|++
T Consensus 72 il~LheKvl~a------------KdETI~~lk~EN~fLKeAl~s~---QE~y~ed~kTI~~L~~ 120 (126)
T PF13118_consen 72 ILNLHEKVLDA------------KDETIEALKNENRFLKEALYSM---QELYEEDRKTIELLRE 120 (126)
T ss_pred HHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHH
Confidence 55566665544 4456889999999999997522 2234444444444443
No 74
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=54.27 E-value=2.3e+02 Score=28.03 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023249 136 GSKWVDLFVHEMMS----AADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (285)
Q Consensus 136 g~eWVEl~V~EM~s----Asd~dDARaRAsRvLEafEKsI~~rs~a-a~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR 210 (285)
+.+=+|.|+.++.. -.+++++|+==..-++++|++..+..+. +|.+ -...+++.=..||+++-.+=+.
T Consensus 206 ~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak-------~~G~lvna~m~lr~~~qe~~e~ 278 (320)
T TIGR01834 206 GYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAK-------VHGKFINALMRLRIQQQEIVEA 278 (320)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555553 2455556555555666666665554433 2222 2223333333444444333332
Q ss_pred ---------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 211 ---------HLEQEQKEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 211 ---------~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
..|.++..+.+.+||.-+..-..+|++||.++
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 23556666677777777777777777777653
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.12 E-value=1.4e+02 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=5.6
Q ss_pred HHHHHHHHhhHHHH
Q 023249 187 KEHLQSLLNDNQIL 200 (285)
Q Consensus 187 Ke~l~~l~~eN~iL 200 (285)
.+.+-+|..+|.-+
T Consensus 50 ~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 50 REEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 76
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.96 E-value=93 Score=28.64 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQIL 200 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iL 200 (285)
+++||+.||+++..|..++.-+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 74 LREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555544
No 77
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.61 E-value=1.4e+02 Score=29.93 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIR 243 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNY 243 (285)
+.++-..|+.+++.|-.+-+.+-+.+..-.....+.++...|..+||+.+.+..++++.+|..-+
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665431111124455556677777777777777777665433
No 78
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=53.34 E-value=39 Score=28.16 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE 239 (285)
|+..|+.-|++-..+|+.|+
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555665554
No 79
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.67 E-value=33 Score=33.89 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qY 231 (285)
+++||..||+++..|..++ ..+++..+|...|+.++.+|
T Consensus 62 L~~EN~~Lk~Ena~L~~~l--------------~~~e~l~~En~~Lr~ll~~~ 100 (337)
T PRK14872 62 LETENFLLKERIALLEERL--------------KSYEEANQTPPLFSEILSPY 100 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccc
Confidence 5555555555544443332 33444444555566555544
No 80
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=52.60 E-value=73 Score=30.21 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHH
Q 023249 190 LQSLLNDNQILKK 202 (285)
Q Consensus 190 l~~l~~eN~iLKR 202 (285)
+..+.+||.-||+
T Consensus 68 ~~~l~~EN~~Lr~ 80 (283)
T TIGR00219 68 VNNLEYENYKLRQ 80 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555553
No 81
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.80 E-value=1.3e+02 Score=27.83 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 181 LEHASLKEHLQSLLN-------DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 181 kEn~~LKe~l~~l~~-------eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
.++..|.++++.|.. |...|-.++.+ ++++.+.+.||..|..|.|+|..+..
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 33444444443 56778999999999999999998764
No 82
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.16 E-value=61 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 023249 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 161 sRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
-+.|+.|...... .. .+.+||..|++++..|..+|.-|.
T Consensus 86 I~fLq~l~~~~~~-~~-~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 86 ISFLQNLKTTNPS-DQ-ALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHhcchh-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666532211 11 266677777777777666665554
No 83
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=51.12 E-value=2.5e+02 Score=29.12 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=26.0
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 139 WVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 139 WVEl~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
|+=.|+.- ....+.+.+.|=.+..+.+++........ +..|+++++.|..+..-.+++
T Consensus 68 ~~~~~~~~--~~~~l~~~~~~l~~~~~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~ 125 (779)
T PRK11091 68 WAVYFLSV--VVEQLEESRQRLSRLVAKLEEMRERDLEL-----NVQLKDNIAQLNQEIAEREKA 125 (779)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 22334445555555555555554443222 233444444444444444433
No 84
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.66 E-value=3.1e+02 Score=28.43 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHH
Q 023249 154 DDARGRAARILEV 166 (285)
Q Consensus 154 dDARaRAsRvLEa 166 (285)
.+|+..|..+++-
T Consensus 28 ~~Ae~eAe~i~ke 40 (514)
T TIGR03319 28 GSAEELAKRIIEE 40 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777666643
No 85
>PLN02678 seryl-tRNA synthetase
Probab=50.61 E-value=1.2e+02 Score=30.83 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
+.+|-..|+.+++.|..+.+.+-+.+..=..-..+.++...|+++||+.+.+.+++++.+|..-+.+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555543111123445666788888888888888888887665543
No 86
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.45 E-value=1.5e+02 Score=26.14 Aligned_cols=67 Identities=25% Similarity=0.272 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLN----DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~----eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
...|.+-||+....|.+ +|==.|| |.-+|+-.++.-...+||.+|++-+++-+-.+..++..-|+|-
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KR-v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKR-VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888877765 3333444 5667777777777888999999999988888888888877776
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.44 E-value=2e+02 Score=25.99 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
..+|...|+.++....++...|+.+-+....-.+++.+...|-..|.|-+.+-+..-..|
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888777777776666666665555555555555544444333
No 88
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.91 E-value=29 Score=27.64 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaI 206 (285)
+++||.-||++++.|-.|-.-+||-+.|
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6788888888888776666666665544
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=48.79 E-value=57 Score=25.19 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+..||..|++++..+..|+.-|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766554
No 90
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.68 E-value=1.3e+02 Score=29.24 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccccchH
Q 023249 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM-----KIRILNGISEMGSQ 254 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~-----nNYaL~~~~~~~~~ 254 (285)
+.|...+|+++.....++...++=+.....+. +..+..+...+....+++++|+.+|. ..|.-.-|+...-.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l---~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEEL---QELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34677788888888887777777665555444 44444566666788899999999987 56666656666666
Q ss_pred HHHHHhh
Q 023249 255 ILVKIAH 261 (285)
Q Consensus 255 ~hL~~A~ 261 (285)
++.=|..
T Consensus 280 ~~~Le~l 286 (312)
T smart00787 280 LKLLQSL 286 (312)
T ss_pred HHHHHHH
Confidence 6655554
No 91
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.93 E-value=2.4e+02 Score=28.07 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
.+.+...|+.++..+..+-..+++.+
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i 204 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNI 204 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44455555555555555544444333
No 92
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.71 E-value=91 Score=32.36 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
.|.-...|+++|+.+.+|...+++-.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~ 99 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQR 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344556667776655555555433
No 93
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=47.42 E-value=97 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE-LLKLVISQYQDQARNL 238 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~-~Lkqlv~qYQEqir~L 238 (285)
+..|...|..+++.|-.+|.-|..-+.-.|....-++++..++. .++.+...|.+-++++
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999888555555554444444444432 4555666666666665
No 94
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.30 E-value=36 Score=35.22 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQIL 200 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iL 200 (285)
++|+.+.||.+++.+.+++.=+
T Consensus 81 LEKqLaaLrqElq~~saq~~dl 102 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDD 102 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444444444444433333
No 95
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.73 E-value=1.1e+02 Score=26.67 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccccccccccchH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS----QYQDQARNLEMKIRILNGISEMGSQ 254 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~----qYQEqir~LE~nNYaL~~~~~~~~~ 254 (285)
...|...||.||...-.+-.=||.. ..+.++.+.++..|+.-.. .|+.++..+.. ||||.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~-------- 88 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIK-------- 88 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------
Confidence 3446666777776666665556652 3455666666777766666 88888888876 78888
Q ss_pred HHHHHhh
Q 023249 255 ILVKIAH 261 (285)
Q Consensus 255 ~hL~~A~ 261 (285)
..|..|.
T Consensus 89 ~al~~ak 95 (155)
T PF06810_consen 89 SALKGAK 95 (155)
T ss_pred HHHHHcC
Confidence 7777654
No 96
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=46.67 E-value=1e+02 Score=28.15 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 162 RILEVFERSIITNSKA--------SKELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 162 RvLEafEKsI~~rs~a--------a~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
-||.+|||.+.+.=-. ++.+=...+|+||-.++.+-+-||..
T Consensus 108 VvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 108 VVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998764222 24444566777777777777766653
No 97
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=46.40 E-value=1.1e+02 Score=31.12 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=69.4
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH--HHHHHhhhhhhhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH
Q 023249 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVF--ERSIITNSKASKELEHASLKEHLQSLLN--DNQILKKAVSIQHE 209 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEaf--EKsI~~rs~aa~~kEn~~LKe~l~~l~~--eN~iLKRAvaIQhe 209 (285)
.||+.|+.-.+... .+|.-+|+-| -|.|.+..+. .+ .+++.+...++ +..-|+..+. ..+
T Consensus 264 gDGa~WIk~~~~~~----------~~~~~~LD~FHl~k~i~~~~~~--~~---~~~~~~~~al~~~d~~~l~~~L~-~~~ 327 (470)
T PF06782_consen 264 GDGASWIKEGAEFF----------PKAEYFLDRFHLNKKIKQALSH--DP---ELKEKIRKALKKGDKKKLETVLD-TAE 327 (470)
T ss_pred CCCcHHHHHHHHhh----------cCceEEecHHHHHHHHHHHhhh--Ch---HHHHHHHHHHHhcCHHHHHHHHH-HHH
Confidence 89999987655421 2445555554 2334333332 11 23444444444 3444555554 334
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcCceeEE
Q 023249 210 RHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAHQNSLTMMI 269 (285)
Q Consensus 210 R~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~q~ss~~~~ 269 (285)
+...-+++...++.|+.-+..+.+.|+..... -.+.|++-+|++.|. .+..-++-+|.
T Consensus 328 ~~~~~~~~~~~i~~~~~Yl~~n~~~i~~y~~~-~~~~g~g~ee~~~~~-~s~RmK~rg~~ 385 (470)
T PF06782_consen 328 SCAKDEEERKKIRKLRKYLLNNWDGIKPYRER-EGLRGIGAEESVSHV-LSYRMKSRGMS 385 (470)
T ss_pred HhhhchHHHHHHHHHHHHHHHCHHHhhhhhhc-cCCCccchhhhhhhH-HHHHhcCCCCe
Confidence 44444556678888999999999999654432 345789999998885 45555555554
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.38 E-value=2.5e+02 Score=32.62 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHhhHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK-AVSIQHERHLEQEQKE----KEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR-AvaIQheR~~e~e~~~----~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
..++++.|.+.++.+..+-..|+| =-++-...+++++++. .+++.|+..+.||++++.-++..|-.+.
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777775 2222222345555443 4677788889999999999988887776
No 99
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.02 E-value=62 Score=30.53 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
+.+||..|+.+++.|.+|+.-||+.
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 100
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.26 E-value=1.6e+02 Score=27.53 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhh
Q 023249 164 LEVFERSIITNSKA 177 (285)
Q Consensus 164 LEafEKsI~~rs~a 177 (285)
|-.|++.|.++-..
T Consensus 103 l~iF~~eI~~~l~~ 116 (301)
T PF14362_consen 103 LKIFEKEIDQKLDE 116 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666555443
No 101
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.14 E-value=29 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred cCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 50 lFP~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
..=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 21 ~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 21 AQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346888999999999999999999999999874
No 102
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=44.98 E-value=26 Score=30.37 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Q 023249 218 EKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQI 255 (285)
Q Consensus 218 ~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~ 255 (285)
.++++++++.+.||.+||.+++..=-+++|...+|.-+
T Consensus 18 ~~q~~~~~~q~~q~~~Ql~~~k~q~~s~tG~r~~~~~~ 55 (195)
T PF07996_consen 18 AQQLAQWKQQLEQLKQQLQQAKQQYNSLTGNRGLGNLL 55 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHh
Confidence 45677777788888888888777666688888887655
No 103
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.68 E-value=1.2e+02 Score=29.84 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 023249 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQ 232 (285)
|-+.|-.+++.|-+.|.=||+=+ +.+.+|++-|||++...+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa----------~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQA----------SELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 45555567777777777666532 345567777777766543
No 104
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.63 E-value=1.8e+02 Score=29.45 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 218 EKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 218 ~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.++..+|...+.+|+.+++.||.+.
T Consensus 61 a~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 61 AQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999988
No 105
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=44.15 E-value=1.5e+02 Score=22.98 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ----KEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~----~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
-|+..++.|.-.|..|-.+.-+.|.+--++-- .+-..-.| ++--+|+++++.++..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~ 61 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEV 61 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHH
Confidence 47889999999999999999888777544332 22345555 6778999999988754
No 106
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=43.50 E-value=37 Score=32.26 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=43.5
Q ss_pred CChhhhHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhh
Q 023249 134 TDGSKWVDLFVHEMMSA-------ADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLND 196 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sA-------sd~dDARaRAsRvLEafEKsI~~rs~a-a~~kEn~~LKe~l~~l~~e 196 (285)
..|.=--+..++-|-++ .+.-|=|+ |+|++|++.|..--.... .+.||.+++++|++.+.++
T Consensus 157 ~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~A-Aa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq 226 (244)
T COG1938 157 PSGALLNECLKRGIPALVLLAETFGDRPDPRA-AARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQ 226 (244)
T ss_pred ccHHHHHHHHHcCCCeEEEeccccCCCCChHH-HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555432 34446665 789999999999888777 4899999988888877654
No 107
>PHA00276 phage lambda Rz-like lysis protein
Probab=43.27 E-value=68 Score=28.44 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcCceeEEEEE--EeeCCCCCC
Q 023249 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAHQNSLTMMIIIV--IVSDNRHSP 281 (285)
Q Consensus 207 QheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~q~ss~~~~~~~--~~~~~~~~~ 281 (285)
|||-.+.....+.+-|.+-++-.+||+.+-..|-.|--|- =.|+--...=+++.---+ .+||+++.|
T Consensus 37 ~~e~~~~~~a~~~~QqaVaal~~~yqkEladaK~~~DrLi--------adlRsGn~RLqvr~~a~s~~~~s~gg~~~ 105 (144)
T PHA00276 37 QNEYVKKVEATADTQAAINAVSKEYQEDLAALEGSTDRVI--------ADLRSDNKRLRVRLKPTSGEVQSDGRCLP 105 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHcCCceEEeeeecccccccCCCCCCC
Confidence 3333333333333334444588888888888888887776 555544433333332222 247777765
No 108
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.17 E-value=1.5e+02 Score=22.78 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+..|+..|++++..+.+.|.+-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888776544
No 109
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=43.06 E-value=40 Score=34.69 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
..-|.++..-.. |.|+-+-+.+|- ||-.++-.+ +.++..||.||+++|.+-|+=.
T Consensus 350 V~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n------~k~~~ey~~qL~~~E~~~~~~~ 404 (521)
T COG5296 350 VACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKN------KKAAMEYQRQLEEIEDNEGARV 404 (521)
T ss_pred HHHHHhcCccch-hHHHHHHHHHHH-HHHHHHccC------HHHHHHHHHHHHHHHHhhhccc
Confidence 334455555444 888888888884 555555444 3478899999999999987744
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.95 E-value=3.4e+02 Score=26.75 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh-h----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 023249 142 LFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (285)
Q Consensus 142 l~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~a-a----~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~ 216 (285)
.+|.+ .+..+++|....+.+=+.+.+-......- . +.-+.+-|+.++..+..||-=|..-+.+=++.|..+..
T Consensus 199 qLv~d--cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a 276 (306)
T PF04849_consen 199 QLVLD--CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQA 276 (306)
T ss_pred HHHHH--HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34544 34556777888888777777666555444 1 55566777777777777777666666554444433332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 217 -------KEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 217 -------~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
+-.|+.. ++...||++|+|--+|
T Consensus 277 EL~elqdkY~E~~~---mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 277 ELQELQDKYAECMA---MLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhCCC
Confidence 2223333 6677889998875443
No 111
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=42.81 E-value=26 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHHh
Q 023249 56 PEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 56 ~qvle~aLe~cgndlDaAIksL~ 78 (285)
..=..+||++||.||-.||=+|.
T Consensus 99 reeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 99 REEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 33467899999999999998874
No 112
>smart00338 BRLZ basic region leucin zipper.
Probab=42.55 E-value=1.2e+02 Score=22.11 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 023249 182 EHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKR 202 (285)
....|..++..|..+|.-|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 27 EIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 113
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=42.26 E-value=22 Score=35.39 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.7
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 023249 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (285)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lF----P~md~qvle~aLe~cgndlDaAIksL~~L~L~s 84 (285)
.+||+. .||.+ ++.+..|+.+= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~K----frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQK----FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHHH----hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 668854 57777 55667777664 479999999999999999999999999988733
No 114
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=41.81 E-value=1.3e+02 Score=27.57 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=30.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 023249 188 EHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (285)
Q Consensus 188 e~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEq 234 (285)
.++..|+.|--.|+++|+-.|.|+ .+.-+-.-|.+-.|||..
T Consensus 84 K~~~~LL~EELkLqe~~A~e~~~~-----~~~~lleAkk~asqYQkE 125 (176)
T PF06364_consen 84 KNFVDLLSEELKLQEAVANENQRR-----ADMALLEAKKMASQYQKE 125 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 355567788888888998888775 334566778888899843
No 115
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.75 E-value=3e+02 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 219 KEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|+|.|+.+-+.-||||--|.-.-+.|.
T Consensus 379 ~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 379 EELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5889999999999999998887777776
No 116
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.42 E-value=1.7e+02 Score=26.19 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
...+++++..|..++.-|+.-+.-.-.+....+.+..+..+ ..-..|++.|.-|..+|--|+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665554443333222222222222 223456666666666665555
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.27 E-value=2e+02 Score=25.43 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 162 RvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
.-|+.+++.+...... . +..|+..|++++..+-.+-.-+.+++. ..+-|+.-|.-.+..-+++++.||
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e----------~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE----------ILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655555555 2 566666666666555555544444432 233466666666677777777777
Q ss_pred Hhcccc
Q 023249 240 MKIRIL 245 (285)
Q Consensus 240 ~nNYaL 245 (285)
.-|--|
T Consensus 172 ~En~~L 177 (194)
T PF08614_consen 172 EENREL 177 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 118
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.55 E-value=3e+02 Score=25.48 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 219 KEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.|.+.....+.+-|.||+.||..+
T Consensus 161 ~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 161 AERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555555543
No 119
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=39.95 E-value=2.6e+02 Score=27.55 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=46.2
Q ss_pred HHHHHHH--hhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHH----HHHHHHHHHHHH
Q 023249 166 VFERSII--TNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKL----VISQYQDQARNL 238 (285)
Q Consensus 166 afEKsI~--~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~-~~~El~~Lkq----lv~qYQEqir~L 238 (285)
-+||+|. .||.+.|....++||+++..-++. +|++|+--|....|-|. .-.|+...|+ ++.--|++...|
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~---ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeL 230 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK---IKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEEL 230 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688885 466666888999999999887754 68888888877765553 2233333332 444444444444
Q ss_pred HH
Q 023249 239 EM 240 (285)
Q Consensus 239 E~ 240 (285)
..
T Consensus 231 kr 232 (302)
T PF07139_consen 231 KR 232 (302)
T ss_pred HH
Confidence 43
No 120
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=39.62 E-value=3.8e+02 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 219 KEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
+.++++.++=.+|++|++.|+.+.
T Consensus 83 ~r~~~~~~i~~~~~~q~~~l~~~~ 106 (332)
T TIGR01541 83 ERLDARLQIDRTFRKQQRDLNKAM 106 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555566667777777776553
No 121
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.54 E-value=2.2e+02 Score=30.98 Aligned_cols=66 Identities=24% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 157 RGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (285)
Q Consensus 157 RaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir 236 (285)
|-||+--+|..|--+... .++.|.+.+...++. -+++...+++|+.+||-.+.|.|-|.+
T Consensus 86 RI~~sVs~EL~ele~krq---el~seI~~~n~kiEe-----------------lk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQ---ELNSEIEEINTKIEE-----------------LKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH-----------------HHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 556666666655332210 244455544444443 344556788899999999999999999
Q ss_pred HHHHhc
Q 023249 237 NLEMKI 242 (285)
Q Consensus 237 ~LE~nN 242 (285)
.|-.+|
T Consensus 146 El~~~n 151 (907)
T KOG2264|consen 146 ELRETN 151 (907)
T ss_pred HHHhhc
Confidence 986655
No 122
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.40 E-value=51 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 213 EQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
.+++.++|....++.+.||+.+++.|+..
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr 30 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENR 30 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888999999999988854
No 123
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=39.27 E-value=57 Score=34.32 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=32.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 204 vaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
..|=+.|.+|.+ |+++|.--++-|=|+||-||..|-.|.
T Consensus 31 s~ir~sR~rEK~----El~~LNDRLA~YIekVR~LEaqN~~L~ 69 (546)
T KOG0977|consen 31 SPIRDSREREKK----ELQELNDRLAVYIEKVRFLEAQNRKLE 69 (546)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655544 699999999999999999999999998
No 124
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=39.26 E-value=1.9e+02 Score=24.92 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHh
Q 023249 153 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLN 195 (285)
Q Consensus 153 ~dDARaRAsRvLEafEKsI~~rs~aa-------~~kEn~~LKe~l~~l~~ 195 (285)
++|.+.||..-+.-+|+.+-+|+..+ ..+|...|..++..|..
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 56777888887777888877776663 44455555555544443
No 125
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=39.26 E-value=25 Score=26.91 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
||.-||.-+...++++..||.-|.-|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888888887776
No 126
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.76 E-value=4.3e+02 Score=28.67 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 160 AARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQI-------LKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 160 AsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~i-------LKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
..+-+..+++.+...-.. . ++.||..||-.++.+.+++-- ++|=+..-+...+|++.+..+...|+.-+..
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443 1 444444444444444444433 3444555555666666555555554444433
No 127
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=38.48 E-value=2.4e+02 Score=25.59 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=25.6
Q ss_pred HHHHHHHH---HHHhhhhhhhhHHHHHHH----HHHHHHHhhHHHHHHHHH
Q 023249 162 RILEVFER---SIITNSKASKELEHASLK----EHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 162 RvLEafEK---sI~~rs~aa~~kEn~~LK----e~l~~l~~eN~iLKRAva 205 (285)
.=|.+||- -+..-++|.-..-|..++ +++..+.+++.-+||+..
T Consensus 29 tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~ 79 (170)
T PRK13923 29 TQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLG 79 (170)
T ss_pred hHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccc
Confidence 34667773 333323331122244444 788899999999998843
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.85 E-value=4.7e+02 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHhhH
Q 023249 179 KELEHASLKEHLQSLLNDN 197 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN 197 (285)
+++|+.+|+.+++.+.++-
T Consensus 448 ~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 448 LKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543
No 129
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=37.42 E-value=1.2e+02 Score=28.70 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 023249 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (285)
Q Consensus 186 LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEq 234 (285)
.+.++.-|-+||..|++-| +...+|+..|+++..+|...
T Consensus 220 ~~~r~~~leken~~lr~~v----------~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQV----------EQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhccc
Confidence 3556667777777776544 34555677777777776554
No 130
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.20 E-value=2e+02 Score=25.89 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q 023249 162 RILEVFERSI 171 (285)
Q Consensus 162 RvLEafEKsI 171 (285)
==|.|||-.-
T Consensus 28 TQL~AFeEvg 37 (161)
T TIGR02894 28 TQLSAFEEVG 37 (161)
T ss_pred HHHHHHHHHH
Confidence 3478888543
No 131
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.90 E-value=5.1e+02 Score=28.18 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023249 159 RAARILE 165 (285)
Q Consensus 159 RAsRvLE 165 (285)
||.+++.
T Consensus 501 ~A~~~~~ 507 (771)
T TIGR01069 501 QAKTFYG 507 (771)
T ss_pred HHHHHHH
Confidence 3333333
No 132
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=36.37 E-value=43 Score=28.26 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHhhH
Q 023249 179 KELEHASLKEHLQSLLNDN 197 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN 197 (285)
+++||-+||.+++.|+.-.
T Consensus 84 LeEENNlLklKievLLDML 102 (108)
T cd07429 84 LEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667777777777766543
No 133
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=36.28 E-value=60 Score=24.89 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHhhH
Q 023249 180 ELEHASLKEHLQSLLNDN 197 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN 197 (285)
.+|...||+++..|...|
T Consensus 13 rEEVevLK~~I~eL~~~n 30 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERN 30 (59)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555554444433
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.18 E-value=5e+02 Score=27.76 Aligned_cols=39 Identities=33% Similarity=0.365 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK 217 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~ 217 (285)
+++|...|.++++...++|.-|-+...=|-+|..+++..
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~ 130 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEE 130 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777766677777666643
No 135
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.56 E-value=3.8e+02 Score=26.95 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~ 237 (285)
..++.+.+.+++..+++-+...|+++.-=+.-.+-.+...+++...|..+.++..+.+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 412 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRS 412 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 46678888999999999988888888644443344455556666667677666666644
No 136
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=35.49 E-value=15 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~~L~L~ 83 (285)
+|.++.-.+.|+++|=|++.|+..+.+|.-.
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 6778888999999999999999999987643
No 137
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=35.36 E-value=28 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=29.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~ 81 (285)
.++|.+||.-= +-.---..++|++||+|++-|-+-|+.=.
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~a 86 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKA 86 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 46677777541 22334588999999999999999998743
No 138
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=35.07 E-value=2.2e+02 Score=22.19 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 212 LEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 212 ~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
-|||.+...+..+++-+..-..+|..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777777777777777777777777774
No 139
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.85 E-value=3e+02 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
...|.-.||+++......+..++|=
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666553
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.63 E-value=2.9e+02 Score=24.80 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 221 VELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 221 l~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++++++.+..+.+.+-+---|-|+|.
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444455555555555555566665
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.55 E-value=2.1e+02 Score=27.61 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+..-...+|++++.++.||.-|..-. .+.+.+|++-+.++..|..-.++..|..+.|+-.-|-|.
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~el---eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKEL---EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 45567788888888888887554322 233446777777777777777778887777776666554
No 142
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.36 E-value=57 Score=33.84 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh----------------HH---H-HHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE----------------QE---Q-KEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e----------------~e---~-~~~El~~Lkqlv~qYQEqir~L 238 (285)
-..+++.|+.||..|.++-.-|+..++-|+.---- .. . -+.+++++||.|+--|=|+.+|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 55688999999999999999999999888763211 00 0 0457889999999988888888
Q ss_pred HHhc
Q 023249 239 EMKI 242 (285)
Q Consensus 239 E~nN 242 (285)
|..-
T Consensus 103 ~da~ 106 (514)
T PF11336_consen 103 EDAA 106 (514)
T ss_pred hhHH
Confidence 8654
No 143
>PHA02047 phage lambda Rz1-like protein
Probab=34.36 E-value=1.6e+02 Score=24.74 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQ 232 (285)
-|+|.+.|+.||+.+-..-.-+-+.|.--|.| .++.-+++|+.+.+|+
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k------ae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR------TNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCC
Confidence 68889999999998876666666666555555 2333344444555543
No 144
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.24 E-value=5.4e+02 Score=26.51 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHH----HHHHHHHHHHH
Q 023249 158 GRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE----LLKLVISQYQD 233 (285)
Q Consensus 158 aRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~----~Lkqlv~qYQE 233 (285)
.|.+-.+.++=+...++..+ +.+.-..|+..-..+..|..=|+.+..-|.+++...+-...|.+ +|.+-+..=|.
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~-l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~ 224 (420)
T COG4942 146 VRLAIYYGALNPARAERIDA-LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444 44455555555556666666777777777777666554443333 33333333444
Q ss_pred HHHHHHHhccccc
Q 023249 234 QARNLEMKIRILN 246 (285)
Q Consensus 234 qir~LE~nNYaL~ 246 (285)
++.+|-.|--+|.
T Consensus 225 ~l~eL~~~~~~L~ 237 (420)
T COG4942 225 KLEELRANESRLK 237 (420)
T ss_pred HHHHHHhHHHHHH
Confidence 4444544444444
No 145
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.16 E-value=4.2e+02 Score=29.21 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++.....++.+|..+..||..|.+++ .+|-+-..+...+..+...-+.-.+.++...|--|-+|.
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55567778889999999999999988 456555555555555555556666667777777777776
No 146
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.10 E-value=4.5e+02 Score=25.62 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 023249 157 RGRAARILEVFERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (285)
Q Consensus 157 RaRAsRvLEafEKsI~~rs~a-----a~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qY 231 (285)
|..=+-|=|-|-|+++..|-= ++.-+...||..|+.+-....-|+|=+. +..++++-+.+...-|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778899999886644 1666777778887777777777776652 33334443444444444455555
Q ss_pred HHHHHHH
Q 023249 232 QDQARNL 238 (285)
Q Consensus 232 QEqir~L 238 (285)
+++|+..
T Consensus 160 re~L~~r 166 (302)
T PF09738_consen 160 REQLKQR 166 (302)
T ss_pred HHHHHHH
Confidence 6666544
No 147
>PRK00106 hypothetical protein; Provisional
Probab=34.01 E-value=5.8e+02 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHH
Q 023249 154 DDARGRAARILE 165 (285)
Q Consensus 154 dDARaRAsRvLE 165 (285)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 467777766663
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.87 E-value=5.8e+02 Score=26.94 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLL 194 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~ 194 (285)
.|.....++.+++.+.
T Consensus 314 ~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 314 NHPRVVAAKSSLADLD 329 (754)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444444444444433
No 149
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.30 E-value=1.8e+02 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023249 214 QEQKEKEVELLKLVISQYQDQARNLEMKIRI 244 (285)
Q Consensus 214 ~e~~~~El~~Lkqlv~qYQEqir~LE~nNYa 244 (285)
.++...+..+||+.+.+++++++.+|..-+.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567777787888888888777764433
No 150
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.25 E-value=3.2e+02 Score=23.61 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 212 LEQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 212 ~e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
.||+....++..|++-|..++.++..||..
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888889999999999999999988864
No 151
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.12 E-value=2.9e+02 Score=27.56 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhh
Q 023249 184 ASLKEHLQSLLND 196 (285)
Q Consensus 184 ~~LKe~l~~l~~e 196 (285)
..|++++..+..+
T Consensus 337 ~~l~~~~~~~~~~ 349 (451)
T PF03961_consen 337 EELEEELEELKEE 349 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 152
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=32.81 E-value=2.2e+02 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=12.9
Q ss_pred hHHHHHHhhhc---CceeEEEEEEeeCCC
Q 023249 253 SQILVKIAHQN---SLTMMIIIVIVSDNR 278 (285)
Q Consensus 253 ~~~hL~~A~q~---ss~~~~~~~~~~~~~ 278 (285)
|.+..|-|++- |..+--+.....|.|
T Consensus 128 SEelIKyAHrIS~~NaVsAPLTW~~GDpr 156 (272)
T KOG4552|consen 128 SEELIKYAHRISKHNAVSAPLTWQMGDPR 156 (272)
T ss_pred HHHHHHHHHHhhhcccccCccccccCCCC
Confidence 55666666653 333333344445544
No 153
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.80 E-value=3.4e+02 Score=27.03 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 215 EQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 215 e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
....+++++|+..+.+.++++++.
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444
No 154
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.66 E-value=3.5e+02 Score=26.80 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHH
Q 023249 158 GRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQI 199 (285)
Q Consensus 158 aRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~i 199 (285)
..+....+-|++=+.. ++++.....+++.....+|++
T Consensus 157 ~~~~~~~~fl~~ql~~-----~~~~L~~ae~~l~~f~~~~~~ 193 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKT-----YEKKLEAAENRLKAFKQENGG 193 (498)
T ss_pred hhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCcc
Confidence 4444556655554433 333334444444444444443
No 155
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.59 E-value=2.3e+02 Score=26.35 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhHHH----HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 182 EHASLKEHLQSLLNDNQI----LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~i----LKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
|...||-++..+-.+... +...-...+.+..|.+....|++..+.-...-++++-.||..+-.|+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 667777776655443332 22233445678888888899999999999999999999998887776
No 156
>PRK09039 hypothetical protein; Validated
Probab=32.55 E-value=4.8e+02 Score=25.45 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023249 222 ELLKLVISQYQDQARNL 238 (285)
Q Consensus 222 ~~Lkqlv~qYQEqir~L 238 (285)
...+..+..|+..|.++
T Consensus 168 ~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 168 RESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444666666666555
No 157
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=32.31 E-value=33 Score=30.31 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e----~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
+..|...|+.++.+|..||.-|.--.+--..++++-+ ..-.++.+|+-++..|++-+....
T Consensus 20 l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~ 84 (181)
T PF09311_consen 20 LEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESR 84 (181)
T ss_dssp HHHCCHHHHT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccc
Confidence 7778899999999999999999887765555543222 233688888889999887665443
No 158
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=32.13 E-value=1.2e+02 Score=28.87 Aligned_cols=38 Identities=29% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 192 ~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
.+.+||..||.=.+-...++.+.+...+|.++||.++.
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444443334444444555555555555554
No 159
>PF14645 Chibby: Chibby family
Probab=32.07 E-value=53 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
...|+..||++...|.+||..||-=+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKI 94 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888889999998888533
No 160
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=32.04 E-value=98 Score=22.68 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 023249 185 SLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAva 205 (285)
.||+|++.|-.+-.+|..+|.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.95 E-value=2.8e+02 Score=25.48 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 213 EQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
+++...+|++.++.-++.-+.++.+++.
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666655555555543
No 162
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=31.94 E-value=3e+02 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 203 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 203 AvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
.-.+||.|+-. +. ..++++|+...+|..|+-.|
T Consensus 528 ~~~~a~q~~l~--~q-~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 528 LKEEAKQRQLQ--EQ-KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHH
Confidence 33455555322 22 67888888899998888765
No 163
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=31.78 E-value=84 Score=29.06 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 023249 224 LKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 224 Lkqlv~qYQEqir~LE~nN 242 (285)
||...+-|-||+-+||.||
T Consensus 99 L~k~daf~Ke~larlEen~ 117 (192)
T KOG4083|consen 99 LKKQDAFYKEQLARLEENS 117 (192)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3336666666666666666
No 164
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.74 E-value=57 Score=27.86 Aligned_cols=35 Identities=34% Similarity=0.326 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE 213 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e 213 (285)
+..|...||+++..++.||..|.==-----+|.-+
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 78899999999999999999885433333344433
No 165
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=31.68 E-value=2.9e+02 Score=22.60 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHhh
Q 023249 140 VDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL--------KKAVSIQHERH 211 (285)
Q Consensus 140 VEl~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iL--------KRAvaIQheR~ 211 (285)
++.+.....++.| +-....+-|+.+-..+...+.. +|..|..|...|.-+ .|.-..||++.
T Consensus 25 l~~l~~~~~t~~~---~~~~~~~~l~~~~~~~~~~~~~--------ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L 93 (151)
T cd00179 25 LQKLHSQLLTAPD---ADPELKQELESLVQEIKKLAKE--------IKGKLKELEESNEQNEALNGSSVDRIRKTQHSGL 93 (151)
T ss_pred HHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence 4445566666666 1112344455555555555444 566666666665543 35566777765
No 166
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.61 E-value=7.4e+02 Score=30.35 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=63.1
Q ss_pred CChhhhHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023249 134 TDGSKWVDLFVHEMMS-AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~s-Asd~dDARaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR 210 (285)
+.-.+|--.|..+... ...++++|.+...=|++.+..+..-... + +.+=...|+..++.+.-+..-...+++-....
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k 1436 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKK 1436 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899888888876 8899999999999999999998876655 3 55545556666777777776666667766666
Q ss_pred hHhHHH
Q 023249 211 HLEQEQ 216 (285)
Q Consensus 211 ~~e~e~ 216 (285)
++-++.
T Consensus 1437 ~k~f~k 1442 (1930)
T KOG0161|consen 1437 QKRFEK 1442 (1930)
T ss_pred HHHHHH
Confidence 666654
No 167
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.17 E-value=5.1e+02 Score=27.39 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQI 199 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~i 199 (285)
++.|...|..+|+..-+++.-
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~ 459 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKES 459 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888887777766554443
No 168
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.16 E-value=2.2e+02 Score=25.23 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHhhHHHHHHHHHH---HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 189 HLQSLLNDNQILKKAVSI---QHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 189 ~l~~l~~eN~iLKRAvaI---QheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
.++.|+.-+.-|+.++-. +.++++..+...+|+..|...+.++..+|.+.
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666543 22233333444445555555555555544443
No 169
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.15 E-value=3.4e+02 Score=29.42 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+..|+.+|+.-+-+-+|+++.||...-.|+
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999998776666
No 170
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.95 E-value=6.8e+02 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 215 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e 215 (285)
+..++..+....+.+..|+..|+.-.+-+-.|..+++
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666677666665555555555
No 171
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=30.39 E-value=5.5e+02 Score=25.45 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=36.0
Q ss_pred hhhhHH-------HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHh-----hhhh------------hhhHHHHHHHHHHH
Q 023249 136 GSKWVD-------LFVHEMMSAADLDDARGRAARILEVFERSIIT-----NSKA------------SKELEHASLKEHLQ 191 (285)
Q Consensus 136 g~eWVE-------l~V~EM~sAsd~dDARaRAsRvLEafEKsI~~-----rs~a------------a~~kEn~~LKe~l~ 191 (285)
.++|.. .|++|..+=+.+..|..|=..+|.. +=+|.. ..+. -++-|.+.||++|+
T Consensus 161 s~~wm~~~~~~i~nll~~f~~ipe~~~a~~~Ie~ll~~-d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lq 239 (307)
T PF15112_consen 161 SSQWMRDFQMKIQNLLNEFRNIPEIVAAGSRIEQLLTS-DWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQ 239 (307)
T ss_pred CHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhh-hhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHH
Confidence 556654 4677666666666665555554421 222211 1111 06669999999999
Q ss_pred HH---HhhHH
Q 023249 192 SL---LNDNQ 198 (285)
Q Consensus 192 ~l---~~eN~ 198 (285)
.| +.+|.
T Consensus 240 el~~~~e~~~ 249 (307)
T PF15112_consen 240 ELYLQAEEQE 249 (307)
T ss_pred HHHHHHhhcc
Confidence 99 45555
No 172
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=30.36 E-value=37 Score=33.16 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.0
Q ss_pred HHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
-.+||++++.|||.||+-|..--+..+
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA 49 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKA 49 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhh
Confidence 478999999999999999998655554
No 173
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.10 E-value=2.7e+02 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023249 219 KEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~ 240 (285)
-++..|+.-+.+|+..|+.++.
T Consensus 50 ve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 50 VEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666777777666654
No 174
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.02 E-value=5.6e+02 Score=25.39 Aligned_cols=57 Identities=21% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
...|+.++..+.++-.-++.-+...-..+.+|...++++...+.....|.++....+
T Consensus 326 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 326 IASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333333444555566666555555555555544433
No 175
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.43 E-value=5.2e+02 Score=24.92 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaI 206 (285)
+++|...|.++|..|-+|+.-|.+-...
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666555554443
No 176
>PLN02320 seryl-tRNA synthetase
Probab=29.34 E-value=4e+02 Score=27.88 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
...++.+++.|..+.+-+-+.+.. ..-..+.++...|...||+.+....++++.+|.
T Consensus 102 ~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 102 MLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333322 111123344445666666666666666665544
No 177
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=29.04 E-value=3e+02 Score=22.07 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 192 ~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|+++|.-||.=+ +.++.|.+..+.-+..|+..+-.|-+==+.||..+-.+.
T Consensus 2 ~Li~qNk~L~~kL---~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 2 ELIKQNKELKKKL---NDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777644 344555555555666666666666665566776665555
No 178
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.93 E-value=1.1e+02 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHhhHhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 205 SIQHERHLEQ------EQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 205 aIQheR~~e~------e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
.|-|-|.|-. ++-.+.+++|-.....-||+|.|||.
T Consensus 22 L~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 22 LWLHYRSKRQGSQGLSQEEQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456555432 23446788888888999999999995
No 179
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.87 E-value=1.1e+02 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 206 IQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
=+..|.++++.+-+|... .++=+=||.+-++.--|.
T Consensus 19 e~Q~rlK~Le~qk~E~EN-----~EIv~~VR~~~mtp~eL~ 54 (83)
T PF14193_consen 19 ELQARLKELEAQKTEAEN-----LEIVQMVRSMKMTPEELA 54 (83)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHH
Confidence 334455555544444433 223333444444444455
No 180
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.06 E-value=1.7e+02 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
+..+...||.+...+..+|..|+.-+
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777777776543
No 181
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.03 E-value=4.4e+02 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023249 222 ELLKLVISQYQDQARNLE 239 (285)
Q Consensus 222 ~~Lkqlv~qYQEqir~LE 239 (285)
.+++..+.+++++|...+
T Consensus 156 ~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333335555555555544
No 182
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=27.97 E-value=57 Score=28.87 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 190 LQSLLNDNQILKKAVSIQHERHLEQEQKE-KEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 190 l~~l~~eN~iLKRAvaIQheR~~e~e~~~-~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.++|+.+-.-|.|+++.++-|.++..... +-..+|.+-+.+|||-.|+|...+
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi 125 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMI 125 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45778888889999999999888766522 456667789999999999987544
No 183
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=27.60 E-value=6.1e+02 Score=25.11 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=60.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 023249 151 ADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (285)
Q Consensus 151 sd~dDARaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv 228 (285)
..++-|+++.....+.|++.+..-... + -.-....+.++++...+.-...++++.+...|.+.=-.-.-+|-+-+.-+
T Consensus 368 a~~~~A~a~~~~a~~~y~~t~~~a~~eV~~a~~~~~~~~~~~~~~~~~~~~a~~~~~la~~ry~~G~~~~l~vl~aq~~~ 447 (478)
T PRK11459 368 ANLDIAKAQSNLSIASYNKAVVDAVNDVARAASQVETLAEKNQHQQQIERDALRVVGLAQARFNAGIIAGSRVSEAKIPA 447 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 345567777778888899888887666 2 33345567777777777777888888888888653222223444444455
Q ss_pred HHHHHHHHHHHHhccccc
Q 023249 229 SQYQDQARNLEMKIRILN 246 (285)
Q Consensus 229 ~qYQEqir~LE~nNYaL~ 246 (285)
-+.|.++-+++.+...-.
T Consensus 448 l~~~~~~~~~~~~~~~~~ 465 (478)
T PRK11459 448 LRERANGLLLQGQWLDAS 465 (478)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554443333
No 184
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.60 E-value=1.2e+02 Score=23.93 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 216 QKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 216 ~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
+-.+.+++|-+....-+|+|.+||.
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888889999999995
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.07 E-value=5.1e+02 Score=24.03 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
...|+..||..+.-.+|+-|.|--.+|=|
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rql 93 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777776666655554443
No 186
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=26.98 E-value=1.1e+02 Score=28.07 Aligned_cols=39 Identities=33% Similarity=0.377 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 197 N~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
.++|.++| +|+| -++++ +..+|-+...+|+.++++||.+
T Consensus 157 ~qll~~vv--~~e~-PeLe~---~r~~L~~~~~~~k~~L~~lEd~ 195 (228)
T PF12781_consen 157 DQLLSIVV--KHER-PELEE---QRNELLKEIAENKIQLKELEDQ 195 (228)
T ss_dssp HHHHHHHH--HHHC-HHHHH---HHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHH--HHHh-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 5665 24444 4555555788999999999976
No 187
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.91 E-value=6.4e+02 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhh--------hhhh---hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023249 153 LDDARGRAARILEVFERSIITN--------SKAS---KELEHASLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 153 ~dDARaRAsRvLEafEKsI~~r--------s~aa---~~kEn~~LKe~l~~l~~eN~iLKRAva 205 (285)
+.++...+..-++.+++.+.-. |... ...+.+.|+.++..+-.+-.-|..+..
T Consensus 260 l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888775532 1111 233445555555555555555555555
No 188
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.89 E-value=4.6e+02 Score=23.45 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQAR 236 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir 236 (285)
|+.-||+.-.|...+++
T Consensus 171 ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 171 EIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55566655555555544
No 189
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=26.64 E-value=4.9e+02 Score=24.14 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH--------------HH----H
Q 023249 157 RGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE--------------QK----E 218 (285)
Q Consensus 157 RaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e--------------~~----~ 218 (285)
.+||-.+-..|-+-...=+...+ +...|--+|..+.|.++-+-.|-+.++ .+ .
T Consensus 83 ~~~AE~~Y~~F~~Qt~~LA~~ei---------rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r 153 (192)
T PF11180_consen 83 EARAEAIYRDFAQQTARLADVEI---------RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQAR 153 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777787777766555444411 111223334444444444433333222 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 219 KEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+|.+.|..--..+|.|+|.|...--.|.
T Consensus 154 ~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 154 QEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666677777777777776544333
No 190
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.58 E-value=4.3e+02 Score=25.86 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHH------------------HHHHHHh
Q 023249 136 GSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKE------------------HLQSLLN 195 (285)
Q Consensus 136 g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe------------------~l~~l~~ 195 (285)
=.+|.+-+ ++ |+...+.+..+++..-|.+..+.|...-.. . ++.++..++. .+....+
T Consensus 57 ld~~~~kl-~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~ 134 (301)
T PF06120_consen 57 LDELKEKL-KE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATR 134 (301)
T ss_pred hHHHHHHH-Hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 34555543 33 466777788888877777777777664333 1 2222211111 1234556
Q ss_pred hHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 023249 196 DNQILKKAVSIQHERHLEQEQKEKEVEL 223 (285)
Q Consensus 196 eN~iLKRAvaIQheR~~e~e~~~~El~~ 223 (285)
+...+.+.++..++|...-..+..+.|.
T Consensus 135 ~la~~t~~L~~~~~~l~q~~~k~~~~q~ 162 (301)
T PF06120_consen 135 KLAEATRELAVAQERLEQMQSKASETQA 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777766666555555544443
No 191
>PRK11677 hypothetical protein; Provisional
Probab=26.50 E-value=97 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQ 234 (285)
Q Consensus 220 El~~Lkqlv~qYQEq 234 (285)
||.+.|+-+.||+.+
T Consensus 37 eLe~~k~ele~Ykqe 51 (134)
T PRK11677 37 ELEKNKAELEEYRQE 51 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 192
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.38 E-value=2.1e+02 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVS-IQHER 210 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAva-IQheR 210 (285)
+.++|..||+|+..|-+|..-||.+|. .+|.|
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999999984 44444
No 193
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=26.30 E-value=5.7e+02 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=27.5
Q ss_pred CChhhh----HHHHHHH---HhcCCC-chHHHHHHHHHHHHHHHH
Q 023249 134 TDGSKW----VDLFVHE---MMSAAD-LDDARGRAARILEVFERS 170 (285)
Q Consensus 134 ~~g~eW----VEl~V~E---M~sAsd-~dDARaRAsRvLEafEKs 170 (285)
.=.+.| .-+|..| |.-.-| +.+||.-|..|+.+=++.
T Consensus 20 iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~ 64 (224)
T PRK15354 20 IIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRY 64 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899 6667778 765555 579999999999876654
No 194
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.25 E-value=5.7e+02 Score=25.40 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=50.4
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--------------HHHHHHHHHHhhHH-
Q 023249 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHA--------------SLKEHLQSLLNDNQ- 198 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~--------------~LKe~l~~l~~eN~- 198 (285)
-.|.-.-|+|-+|..-.-..--|-+|+--++|+ ||-.....-+ ++.+.. .|-+++++-..|--
T Consensus 74 ~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk~aIq~-i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr 151 (338)
T KOG3647|consen 74 QRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLKSAIQA-IQVRLQSSRAQLNNVASDEAALGSKIERRKAELER 151 (338)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456777777777666555556666665555553 4443332222 333333 33333333333322
Q ss_pred HHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 199 ILKKAVSIQHERH---LEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 199 iLKRAvaIQheR~---~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
.=||--+.|--|- -|||....|||. +-.-|=+..+.|
T Consensus 152 ~rkRle~LqsiRP~~MdEyE~~EeeLqk---ly~~Y~l~f~nl 191 (338)
T KOG3647|consen 152 TRKRLEALQSIRPAHMDEYEDCEEELQK---LYQRYFLRFHNL 191 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH---HHHHHHHHHhhH
Confidence 2245555555553 467777777766 444454444433
No 195
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.18 E-value=1e+02 Score=22.55 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023249 224 LKLVISQYQDQARNLE 239 (285)
Q Consensus 224 Lkqlv~qYQEqir~LE 239 (285)
|||.|.--|+||+.|+
T Consensus 4 LrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444554444
No 196
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=26.11 E-value=3.5e+02 Score=27.27 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.+.++..|++++..+..+..=-+ +.-...+......+.++.+.+.+++.|+..|+..-..|+
T Consensus 65 ~~~~~~~L~~ql~~~~~~~~~~~------~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 65 QTATNDALANQLTALQKAQESQK------QELEGILKQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777655532111 111111122223355555566667777777766666555
No 197
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.95 E-value=2.7e+02 Score=25.48 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
+..|...|+++++.+.+|..-|+. ++++. .+.+..+++.++.-++|+..++...=-|
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l------~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEV----YNEQL------ERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888887777776 22222 2234444445555555665555544333
No 198
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.59 E-value=2.8e+02 Score=29.00 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQD 233 (285)
Q Consensus 220 El~~Lkqlv~qYQE 233 (285)
|--.|.|++.||||
T Consensus 144 ek~~lEq~leqeqe 157 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQE 157 (552)
T ss_pred hhccHHHHHHHHHH
Confidence 33346689999994
No 199
>PLN03025 replication factor C subunit; Provisional
Probab=25.50 E-value=76 Score=29.69 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=37.6
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lF----P~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
|.||- .++|.+ +.+...|..++ -.++++.++..++.||.|+-.||..|..
T Consensus 147 ~SRc~----~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 147 QSRCA----IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred HHhhh----cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55673 466665 45566666553 3578999999999999999999998864
No 200
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=25.49 E-value=5.7e+02 Score=23.98 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHH
Q 023249 151 ADLDDARGRAARILEVFERSIITNSKASKELEHASLK-----------EHLQSLLNDNQILKKAVSIQHERHLEQEQKEK 219 (285)
Q Consensus 151 sd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LK-----------e~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~ 219 (285)
..+.+||.++.-+-.+|+.+|..|+.. |+|...|= ++...|.+.-..+.+++.-=.+...+.|...+
T Consensus 46 ~~l~~~r~~~~~aK~~Y~~ai~~Rs~s--QrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 46 DELEAARQEVREAKAAYDDAIQQRSSS--QREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987 44433331 34667888888888888877777777776654
Q ss_pred HHH-H-HHHHHHHHH
Q 023249 220 EVE-L-LKLVISQYQ 232 (285)
Q Consensus 220 El~-~-Lkqlv~qYQ 232 (285)
+.. . .+.++..|-
T Consensus 124 ~~~~~L~~~Il~RYH 138 (207)
T PF05546_consen 124 EAFDDLMRAILTRYH 138 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 332 2 344566664
No 201
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.47 E-value=3.4e+02 Score=26.73 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
+..+-+.||+|.+...|--+||-+-+|. |-+|.++..-.++.||+...=.--|+|++
T Consensus 113 Lk~se~~lkqQ~~~a~RrE~ilv~rlA~---kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 113 LKESEEKLKQQQQEAARRENILVMRLAT---KEQEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 5556677777777777666666554443 33444444444555554444444445543
No 202
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.40 E-value=72 Score=27.78 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
+++|++++--.+.+|++|+..|..+
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~s 25 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEE 25 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
No 203
>PRK14127 cell division protein GpsB; Provisional
Probab=25.40 E-value=89 Score=26.26 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023249 218 EKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 218 ~~El~~Lkqlv~qYQEqir~LE 239 (285)
..|+..|+..+.+|+.|+...+
T Consensus 50 k~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 50 QQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 3456666667777777776554
No 204
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.14 E-value=8.3e+02 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 216 QKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 216 ~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
..+.|+..+|.......+.++.|-..|--|.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4445888888888888888888888888887
No 205
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.11 E-value=2.1e+02 Score=33.09 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccccchHHHHHHhhh
Q 023249 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELL-KLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAHQ 262 (285)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~L-kqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~q 262 (285)
-.|+|+++.|..+ |+.|=+-|-. |++++.+|...| |++-..|+|+||.+|.-|-++. -||+.+-.
T Consensus 367 rElReEve~lr~q---L~~ae~~~~~---el~e~l~esekli~ei~~twEEkl~ktE~in~erq--------~~L~~~gi 432 (1714)
T KOG0241|consen 367 RELREEVEKLREQ---LEQAEAMKLP---ELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ--------AQLESMGI 432 (1714)
T ss_pred HHHHHHHHHHHHH---Hhhhhhccch---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 3455555555433 3334444444 445555555543 5666789999999999999999 89987754
Q ss_pred cCcee
Q 023249 263 NSLTM 267 (285)
Q Consensus 263 ~ss~~ 267 (285)
+=..+
T Consensus 433 s~~~s 437 (1714)
T KOG0241|consen 433 SLENS 437 (1714)
T ss_pred HHhcc
Confidence 43333
No 206
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=24.95 E-value=2.3e+02 Score=22.64 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=24.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023249 171 IITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (285)
Q Consensus 171 I~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQ 207 (285)
|.++-.+...++...|+..++.+-.+|.-|...|.-|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444456666778888888888888887776544
No 207
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.92 E-value=1e+03 Score=28.32 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-
Q 023249 153 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS- 229 (285)
Q Consensus 153 ~dDARaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~- 229 (285)
..+.-.....-|+-++..+.+.-.. . ++.|...+++++..+..+..-+..++..+..+...|+....++..-|++|.
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~ 432 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGL 432 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred -------------HHHHHHHHHHHh
Q 023249 230 -------------QYQDQARNLEMK 241 (285)
Q Consensus 230 -------------qYQEqir~LE~n 241 (285)
+|++++..++..
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~q 457 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEE 457 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.88 E-value=3.2e+02 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHHHh
Q 023249 179 KELEHASLKEHLQSLLN 195 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~ 195 (285)
++.|...|+.+++.+.+
T Consensus 66 lq~ev~~LrG~~E~~~~ 82 (263)
T PRK10803 66 NQSDIDSLRGQIQENQY 82 (263)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 44444444444444333
No 209
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=24.82 E-value=2.1e+02 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
..+.+..+|++.+||=.-+..||.+++.+
T Consensus 87 q~Qrlk~iK~l~eqflK~le~le~~~~~~ 115 (130)
T PF04803_consen 87 QNQRLKAIKELHEQFLKSLEDLEKSHDNQ 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457889999999999999999998874
No 210
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=24.69 E-value=3.6e+02 Score=24.26 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE 239 (285)
+++.++..+...+.++..++
T Consensus 110 ~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 110 AVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333433444444443
No 211
>PRK12704 phosphodiesterase; Provisional
Probab=24.67 E-value=8e+02 Score=25.47 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHhhHhHHHHHHH
Q 023249 153 LDDARGRAARILEVFERSIITNSKAS---KELEHASLKEHLQSL---------LNDNQILKKAVSIQHERHLEQEQKEKE 220 (285)
Q Consensus 153 ~dDARaRAsRvLEafEKsI~~rs~aa---~~kEn~~LKe~l~~l---------~~eN~iLKRAvaIQheR~~e~e~~~~E 220 (285)
+.+|+..|..+++--++-..+..... ..+|....|.+++.- .+|+.+.+|-=. -..|...++.+.++
T Consensus 33 l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~-Le~r~e~Lekke~e 111 (520)
T PRK12704 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEEN-LDRKLELLEKREEE 111 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 023249 221 VELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 221 l~~Lkqlv~qYQEqir~LE~n 241 (285)
+.+.++.+.+=++++..++..
T Consensus 112 L~~re~~Le~re~eLe~~~~~ 132 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEE 132 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 212
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.58 E-value=1.4e+02 Score=25.71 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 170 SIITNSKASKELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 170 sI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+|++-+-- +..-...|-++...|-+||.+||+
T Consensus 64 AVREEVe~-Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEV-LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
No 213
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.48 E-value=3.4e+02 Score=22.04 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMKIR 243 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~nNY 243 (285)
...|+..||..+..|++|++.|-.-|.
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 335888888899999999888876654
No 214
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=24.44 E-value=65 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHhhchhhHHHHHHHHhhhc
Q 023249 57 EVVKSVLGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 57 qvle~aLe~cgndlDaAIksL~~L~ 81 (285)
+-+.++|++||.+|.+..++||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4588999999999999999998653
No 215
>PF15463 ECM11: Extracellular mutant protein 11
Probab=24.28 E-value=2.5e+02 Score=23.85 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=43.2
Q ss_pred CChhhhHHH---HHHHHh-cCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Q 023249 134 TDGSKWVDL---FVHEMM-SAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLN 195 (285)
Q Consensus 134 ~~g~eWVEl---~V~EM~-sAsd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~ 195 (285)
.+=.+|.+. |+.+.. -..-|.+||.-=.++-+.||+.|..|+.+ +..+-..|.++|..+..
T Consensus 69 ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 69 LSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556677764 555544 34467888888888999999999999988 55555556666666543
No 216
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.26 E-value=2e+02 Score=30.85 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHH
Q 023249 157 RGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 157 RaRAsRvLEafEKsI~~rs~a--a~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
|-|=...++.+|.-+-+--.. .+.+||+.||.||..+..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 444455677777666554444 299999999999999999999986
No 217
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=24.11 E-value=3.3e+02 Score=24.70 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 023249 199 ILKKAVSIQHERHLEQEQKEK----EVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 199 iLKRAvaIQheR~~e~e~~~~----El~~Lkqlv~qYQEqir~LE~ 240 (285)
+|...|..|+.-.+..|..++ -+..+|+.|.+-|.+|-+||.
T Consensus 15 ~l~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~ 60 (204)
T PF00517_consen 15 LLNGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALER 60 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHH
Confidence 445555666655555555444 344888899999999999986
No 218
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.09 E-value=4.7e+02 Score=26.57 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 191 QSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 191 ~~l~~eN~iLKRAvaIQheR~~-e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
+.+.+|-.-||-.++-=-||.. ...++.+++++ .+..||.+|-.||
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 4445566666666554444443 23355566666 7778888888888
No 219
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=24.01 E-value=2.9e+02 Score=21.19 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHH
Q 023249 184 ASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAvaIQh-eR~~e~e~~~~El~~Lkqlv~ 229 (285)
..|++||..+.+-..=| .+-+|| ||.+-.+.--.||+.+.+-|-
T Consensus 4 ~~L~~QLd~I~~~K~~l--~ik~~H~Ekl~kitK~p~El~~i~~kl~ 48 (62)
T PF06034_consen 4 RSLTQQLDEINQMKRQL--TIKSQHWEKLKKITKNPKELQEIEKKLQ 48 (62)
T ss_pred ccHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 35778887776654432 456678 888777666667776555443
No 220
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.90 E-value=2.5e+02 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHhhHH
Q 023249 180 ELEHASLKEHLQSLLNDNQ 198 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~ 198 (285)
++|...++++++.+..+|.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~ 51 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARND 51 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333
No 221
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.89 E-value=8.2e+02 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023249 219 KEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~ 240 (285)
+++..+...+.+.|++......
T Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~ 490 (1201)
T PF12128_consen 469 EQLEQADKRLEQAQEQQNQAQQ 490 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554444433
No 222
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.78 E-value=6.7e+02 Score=24.23 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
|.+|..-+-..+..|=+||..+|+-+---+. ..-++..|...++..+..++.|+..||-
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888899999999886654443 3344556677777777777777777763
No 223
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.65 E-value=5.4e+02 Score=26.35 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=33.2
Q ss_pred HHHHHHHHHH--HHHhhHHH-HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 182 EHASLKEHLQ--SLLNDNQI-LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 182 En~~LKe~l~--~l~~eN~i-LKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
|...+.+|+. .+..+|.. +++-..++-.-+.+++..+++++.+.+.++.-|.+++++-
T Consensus 64 ~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 64 ELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4444444444 33344443 4555555555556666666666666667777777776665
No 224
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.60 E-value=2.3e+02 Score=26.36 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qY 231 (285)
-=+||.-|.+.++.+-.|+..|| -.+... .+...+++.|..++...
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk----~en~~L---~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLK----EENEEL---KELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHCC---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44588888888888888888887 233333 33344555554455443
No 225
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=23.52 E-value=76 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.2
Q ss_pred CHHHHHHHHhhch--hhHHHHHHHHhhhc
Q 023249 55 DPEVVKSVLGEHD--NKIEDAIDRLRVLS 81 (285)
Q Consensus 55 d~qvle~aLe~cg--ndlDaAIksL~~L~ 81 (285)
+|.++|.+|.+|- |||-.|||-|--+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5889999999995 89999999887663
No 226
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=23.08 E-value=77 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhch
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHD 67 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cg 67 (285)
-..|+++||+.|.+.++++|+.-.
T Consensus 38 ~~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 38 RKRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHHhCccCCHHHHHHHHHHHH
Confidence 389999999999999999987654
No 227
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.93 E-value=79 Score=23.19 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=18.5
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 023249 145 HEMMSAADLDDARGRAARILEVFERSIIT 173 (285)
Q Consensus 145 ~EM~sAsd~dDARaRAsRvLEafEKsI~~ 173 (285)
.||...--+. ..=|.+||+-|.|+|.+
T Consensus 20 Deli~~~~I~--p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKIT--PQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 4454444443 24589999999999976
No 228
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.85 E-value=6.6e+02 Score=23.84 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 023249 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE-KEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~-~El~~Lkqlv~qYQEqir~L 238 (285)
..|..-|-+.++.+..+-..|+..+.-|-.-..+++... -+++.+++..-.+..|...|
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455544433333333333222 24555555555555554444
No 229
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.77 E-value=1.7e+02 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023249 218 EKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 218 ~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
.+.+++|-+....-+|+|.|||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999995
No 230
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=22.71 E-value=3.1e+02 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (285)
Q Consensus 206 IQheR~~e~e~~~~El~~Lkqlv~qYQEqir~ 237 (285)
|=.+|..+.+...++.++.+..+.+|.+++..
T Consensus 36 vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 36 VTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777788888888899999998874
No 231
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=22.57 E-value=7.6e+02 Score=24.41 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+.+.-...+..+.+|-.|-.-.|..+.+==+|..+......-+++||.-...|.+||..||..-|==.
T Consensus 255 ~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~ 322 (336)
T PF05055_consen 255 LIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCF 322 (336)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67778888889999999999999988877777766555556789999999999999999999877443
No 232
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.47 E-value=4.6e+02 Score=21.85 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQH 208 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQh 208 (285)
.+.+...+|.++.....+=..|+.-+..-.
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544444444444444333
No 233
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=22.40 E-value=83 Score=29.33 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.3
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 26 RSRCSTFGSLVRSGS---DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
|+||. .++|.+ +.+...|...|+.+++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ----IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce----eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 344544 556677888888888888888888888877777665543
No 234
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.30 E-value=6.1e+02 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~-e~e~~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.++.+..+++++..+..++.-+.-....+..-.+ -..+....+.+|...+.+++.|+.+||..-
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~ 408 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554333222222111111 122333456667777777777777777653
No 235
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.27 E-value=8.5e+02 Score=25.30 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 199 ILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 199 iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
-+|.+|-.||.+ -.++..||...+.||.+++|-+|
T Consensus 84 rIkq~FEkkNqk------sahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 84 RIKQVFEKKNQK------SAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556555554 34688999999999999999999
No 236
>smart00338 BRLZ basic region leucin zipper.
Probab=22.18 E-value=1.9e+02 Score=21.09 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=25.9
Q ss_pred HHHHHHhhH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 204 VSIQHERHL---EQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 204 vaIQheR~~---e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++-|..|.+ ..++...+++.|.......+.++..|+..+..|.
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 2233455677777777777777777777666655
No 237
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=22.16 E-value=6.9e+02 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023249 219 KEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~n 241 (285)
+++..+.+-+..-|+++.+|+..
T Consensus 100 ~~l~~~~~~l~~l~~~~~~l~~~ 122 (372)
T PF04375_consen 100 QELAQLQQQLAELQQQLAALSQR 122 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555666666666666544
No 238
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.08 E-value=3.8e+02 Score=25.00 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ--KEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~--~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++.||..|++-...|-.+.+==|+ |+-.+.|.--|-. +.+||..--+.+.+.+.+...|-..|-.|+
T Consensus 67 LqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 67 LQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 667888887776666666665566 6666766666654 446777777777777666666666666665
No 239
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.05 E-value=8.4e+02 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHhhHhHHHHH
Q 023249 191 QSLLNDNQILKKAVSIQHERHLEQEQKE 218 (285)
Q Consensus 191 ~~l~~eN~iLKRAvaIQheR~~e~e~~~ 218 (285)
.+-..+|..+.|-+.-||.+-.++++..
T Consensus 460 ~rq~~e~e~~~q~ls~~~Q~~~et~el~ 487 (1195)
T KOG4643|consen 460 SRQSLENEELDQLLSLQDQLEAETEELL 487 (1195)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334467777777777777777776543
No 240
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.97 E-value=6.2e+02 Score=27.03 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=58.2
Q ss_pred HHHhcCCCchHHHHHHH----HHHHHHHHHHHhhhhh---h---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH
Q 023249 145 HEMMSAADLDDARGRAA----RILEVFERSIITNSKA---S---KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ 214 (285)
Q Consensus 145 ~EM~sAsd~dDARaRAs----RvLEafEKsI~~rs~a---a---~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~ 214 (285)
.+|..+.-.-|-|-||. -.++++++........ . ++.|.+.-.++++.|....--||.-|..|---..++
T Consensus 291 ~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 291 MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Confidence 34444444445555553 3566666666554443 1 666777777788888888888999998888778888
Q ss_pred HHHHHHHHHHHHHHH
Q 023249 215 EQKEKEVELLKLVIS 229 (285)
Q Consensus 215 e~~~~El~~Lkqlv~ 229 (285)
+.+++|..+|-.-++
T Consensus 371 e~mn~Ere~L~reL~ 385 (622)
T COG5185 371 ELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888877765554
No 241
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.94 E-value=2.7e+02 Score=20.26 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 214 QEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 214 ~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
+.+.+.++.++++-..+.++++..|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555
No 242
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=21.86 E-value=3.7e+02 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023249 219 KEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE 239 (285)
+-+.++|.=++--+.+||+|.
T Consensus 57 ~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 57 KLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777665
No 243
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=3.1e+02 Score=28.85 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=25.7
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023249 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRI 244 (285)
Q Consensus 204 vaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYa 244 (285)
++-=|.=-.+.-++..+--.+|+.+..|++||-+-|..||-
T Consensus 454 lt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l 494 (521)
T KOG1937|consen 454 LTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL 494 (521)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH
Confidence 44455555555566666666666677777776666666663
No 244
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.80 E-value=1.6e+02 Score=23.04 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQS---LLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (285)
Q Consensus 179 ~~kEn~~LKe~l~~---l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqi 235 (285)
+..+--.||-+++. +++++.=+-|-+.-|-...+++++ +++..++++..|.+++
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~---~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEE---QIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 44455556655543 344444466666666665555444 5666666888888765
No 245
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.72 E-value=6.8e+02 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023249 217 KEKEVELLKLVISQYQDQARN 237 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~ 237 (285)
...++..++..+.+.+.++..
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 246
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=21.64 E-value=94 Score=24.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=16.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhc
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEH 66 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~c 66 (285)
+--|..+||+++|..+.+++.+-
T Consensus 22 fkD~~k~~pd~k~R~vKKi~~~L 44 (67)
T PF08679_consen 22 FKDFYKAFPDAKPREVKKIVNEL 44 (67)
T ss_dssp HHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHHHH
Confidence 44577889999999999988654
No 247
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.58 E-value=6e+02 Score=22.89 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=17.7
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHH
Q 023249 134 TDGSKWVDLFVHEMMSAADLDDARG 158 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sAsd~dDARa 158 (285)
.|...=++.+++||-. ++..||.
T Consensus 23 EDP~~~l~q~irem~~--~l~~ar~ 45 (219)
T TIGR02977 23 EDPEKMIRLIIQEMED--TLVEVRT 45 (219)
T ss_pred cCHHHHHHHHHHHHHH--HHHHHHH
Confidence 4566789999999988 6666654
No 248
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.29 E-value=4.2e+02 Score=20.98 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 023249 228 ISQYQDQARNLE 239 (285)
Q Consensus 228 v~qYQEqir~LE 239 (285)
-.+|.+.|.+|-
T Consensus 59 K~~YEeEI~rLr 70 (79)
T PF08581_consen 59 KQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346777776664
No 249
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.16 E-value=1.1e+03 Score=25.75 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.3
Q ss_pred CCCCCH
Q 023249 51 FPDVDP 56 (285)
Q Consensus 51 FP~md~ 56 (285)
|-+.||
T Consensus 417 ~~GtDp 422 (782)
T PRK00409 417 GAGTDP 422 (782)
T ss_pred CCCCCH
Confidence 333443
No 250
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.81 E-value=4.9e+02 Score=21.53 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 023249 141 DLFVHEM 147 (285)
Q Consensus 141 El~V~EM 147 (285)
+.++.++
T Consensus 25 ~~v~~~~ 31 (158)
T PF03938_consen 25 DKVFQES 31 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 3344443
No 251
>PRK14127 cell division protein GpsB; Provisional
Probab=20.75 E-value=1.9e+02 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 213 EQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
+|+...+|+..||..+...++++..++.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 252
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.70 E-value=4.1e+02 Score=20.67 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 023249 163 ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 163 vLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+||.++++...+-.+ .+.....|+.+++...++|+-|+
T Consensus 11 ale~Lq~~y~~q~~~-Wq~sy~~Lq~~~~~t~~~~a~L~ 48 (70)
T PF04899_consen 11 ALEELQQSYEKQQQE-WQSSYADLQHMFEQTSQENAALS 48 (70)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 466666666655554 66666667777777777777444
No 253
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.70 E-value=6.2e+02 Score=22.74 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
+..-|.+|++||+.....|.-|..=
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~d 103 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQED 103 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888888888777653
No 254
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=20.61 E-value=6.5e+02 Score=24.97 Aligned_cols=68 Identities=28% Similarity=0.304 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA----VSIQHERHLEQEQKEK-EVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA----vaIQheR~~e~e~~~~-El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
++.|.+|||..+..+..+|.-=..= +-|=.+..-+++...+ --.-|.+-+.||..|+..|-.-|--|+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5677777777777655444321110 1111122211211111 012467789999999999999888887
No 255
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=20.36 E-value=4.2e+02 Score=20.59 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Q 023249 199 ILKKAVSIQHERHLEQ-EQKEKEVELLKLVISQYQDQARNLEMKI-RILN 246 (285)
Q Consensus 199 iLKRAvaIQheR~~e~-e~~~~El~~Lkqlv~qYQEqir~LE~nN-YaL~ 246 (285)
.+|-.+.++....... .+...-+..|.+.+.+..+.++.+=.-| |+|.
T Consensus 55 Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~ 104 (110)
T PF04003_consen 55 WLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLD 104 (110)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555566 6777788889999999888888888888 9998
No 256
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.35 E-value=1.4e+02 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+++|+.+|..+++.|..||.-++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999888876544
No 257
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.34 E-value=4.5e+02 Score=27.30 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 185 SLKEHLQSLLNDNQILKKAVSIQHERHLE--QEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAvaIQheR~~e--~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|+++++.+.+|+..-|+-+-|--+-.++ +++...|+++|+.-=.+--.|++.||.++|-|.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~ 210 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELD 210 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778887777777775554443 455666777766666666667777777777776
No 258
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.28 E-value=3e+02 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
+|++...+.+.+..|..||.-||-.
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777764
No 259
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.22 E-value=8e+02 Score=26.16 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 023249 69 KIEDAIDRL 77 (285)
Q Consensus 69 dlDaAIksL 77 (285)
-+..+|+.|
T Consensus 99 v~~~VV~~L 107 (726)
T PRK09841 99 ILGKTIAEL 107 (726)
T ss_pred HHHHHHHHh
Confidence 344444443
No 260
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=20.14 E-value=3.8e+02 Score=20.04 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 023249 217 KEKEVELLKLVISQY 231 (285)
Q Consensus 217 ~~~El~~Lkqlv~qY 231 (285)
..++-.+|+.++-||
T Consensus 45 L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 45 LEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334455555578777
No 261
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=20.08 E-value=6.2e+02 Score=24.17 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023249 188 EHLQSLLNDNQILKKAVSIQHERHLEQEQKE--KEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 188 e~l~~l~~eN~iLKRAvaIQheR~~e~e~~~--~El~~Lkqlv~qYQEqir~LE 239 (285)
.+|..|+++..-+|+++..||....+.=.+. .||.. +=.+|++-.+..|
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK---~Kk~Y~~~c~~~e 148 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEK---LKSQYRSLAKDSA 148 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5889999999999999999999987443322 24554 4456666655544
No 262
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.08 E-value=2.6e+02 Score=29.88 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhHHHH
Q 023249 155 DARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQIL 200 (285)
Q Consensus 155 DARaRAsRvLEafEKsI~~rs~a-a~~kEn~~LKe~l~~l~~eN~iL 200 (285)
|-|+=+-.+|-.|---.++-+.- .-.-||+|||.+|..|-+||+-|
T Consensus 623 dirNl~~ell~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~l 669 (673)
T KOG4378|consen 623 DIRNLALELLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQTL 669 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Confidence 33333444444444443333332 12345666666666666666544
No 263
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=20.04 E-value=1.9e+02 Score=32.24 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHhhh
Q 023249 200 LKKAVSIQHERHLE-QEQKEKEVELLKLVISQYQDQARNLEMKIRILNGISEMGSQILVKIAHQ 262 (285)
Q Consensus 200 LKRAvaIQheR~~e-~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~~~hL~~A~q 262 (285)
+.|++.||-+|.++ .++.+-+...-...|+..=|+++.||.+---|. .||++|.-
T Consensus 193 ~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~--------~~l~~ae~ 248 (966)
T KOG4286|consen 193 VTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELD--------LKLRQAEV 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHh
Confidence 67899999999885 455667777777889999999999999999999 99999974
Done!