Query 023249
Match_columns 285
No_of_seqs 64 out of 66
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 99.0 2.5E-10 8.6E-15 86.0 4.4 45 41-85 19-63 (67)
2 1wgl_A TOLL-interacting protei 98.9 5.7E-10 2E-14 82.0 4.6 45 41-85 10-54 (59)
3 1p3q_Q VPS9P, vacuolar protein 97.9 1.9E-06 6.4E-11 62.8 0.8 39 42-80 14-52 (54)
4 1otr_A Protein CUE2; protein-p 97.6 4.2E-05 1.4E-09 54.4 3.7 37 44-80 8-44 (49)
5 2di0_A Activating signal coint 96.6 0.0017 5.9E-08 49.5 4.0 39 41-79 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 96.2 0.057 2E-06 42.1 10.5 67 162-238 6-74 (81)
7 1z96_A DNA-damage, UBA-domain 93.9 0.082 2.8E-06 34.2 4.3 34 42-77 6-39 (40)
8 1vg5_A RSGI RUH-014, rhomboid 93.6 0.082 2.8E-06 40.1 4.5 37 41-79 30-66 (73)
9 2v71_A Nuclear distribution pr 93.2 1.1 3.8E-05 39.5 11.7 65 182-246 57-122 (189)
10 2dae_A KIAA0733 protein; mitog 92.7 0.083 2.8E-06 40.6 3.4 37 43-79 13-49 (75)
11 2cpw_A CBL-interacting protein 92.0 0.49 1.7E-05 34.5 6.6 51 24-79 6-57 (64)
12 2jy5_A Ubiquilin-1; UBA, alter 91.9 0.21 7.2E-06 35.0 4.4 37 41-79 13-50 (52)
13 2knz_A Ubiquilin-4; cytoplasm, 91.7 0.2 7E-06 35.2 4.1 36 42-79 13-49 (53)
14 2dak_A Ubiquitin carboxyl-term 91.6 0.14 4.7E-06 37.1 3.3 37 41-79 10-46 (63)
15 1vej_A Riken cDNA 4931431F19; 91.4 0.21 7.1E-06 38.0 4.2 37 41-79 30-67 (74)
16 2g3q_A Protein YBL047C; endocy 91.3 0.25 8.5E-06 32.9 4.1 36 42-79 6-41 (43)
17 2v66_B Nuclear distribution pr 91.1 1.3 4.6E-05 36.0 9.0 64 183-246 5-69 (111)
18 2dah_A Ubiquilin-3; UBA domain 90.6 0.28 9.6E-06 34.9 4.0 37 42-80 11-48 (54)
19 1wji_A Tudor domain containing 90.1 0.34 1.2E-05 35.4 4.2 37 41-79 10-46 (63)
20 2bwb_A Ubiquitin-like protein 89.6 0.45 1.5E-05 32.7 4.3 35 43-79 10-45 (46)
21 1ify_A HHR23A, UV excision rep 89.4 0.35 1.2E-05 33.4 3.6 37 41-79 9-45 (49)
22 2ejs_A Autocrine motility fact 87.6 0.45 1.5E-05 34.9 3.3 41 41-82 14-54 (58)
23 1wj7_A Hypothetical protein (R 87.4 0.58 2E-05 37.9 4.2 36 43-79 42-77 (104)
24 1wr1_B Ubiquitin-like protein 87.1 0.67 2.3E-05 33.5 4.0 36 42-79 19-55 (58)
25 2cp9_A EF-TS, EF-TSMT, elongat 86.9 0.31 1.1E-05 36.2 2.2 40 41-81 10-49 (64)
26 1whc_A RSGI RUH-027, UBA/UBX 3 85.3 1.7 5.7E-05 31.6 5.4 37 41-79 10-47 (64)
27 2ekf_A Ancient ubiquitous prot 84.6 1.2 4E-05 33.0 4.3 41 41-82 14-54 (61)
28 4g3o_A E3 ubiquitin-protein li 82.1 1 3.5E-05 33.1 3.1 38 41-79 18-55 (58)
29 3hnw_A Uncharacterized protein 82.0 10 0.00034 31.5 9.5 95 134-242 31-133 (138)
30 1veg_A NEDD8 ultimate buster-1 81.1 1.7 5.9E-05 33.6 4.2 37 41-79 30-66 (83)
31 2crn_A Ubash3A protein; compac 81.1 3.5 0.00012 30.0 5.7 38 41-80 10-48 (64)
32 2ekk_A UBA domain from E3 ubiq 80.5 1.7 5.8E-05 29.3 3.6 36 41-79 10-45 (47)
33 1dv0_A DNA repair protein HHR2 80.4 0.96 3.3E-05 31.1 2.3 35 43-79 7-41 (47)
34 1wiv_A UBP14, ubiquitin-specif 78.4 2.4 8.2E-05 31.6 4.2 37 41-79 30-66 (73)
35 2dag_A Ubiquitin carboxyl-term 78.4 2.2 7.6E-05 31.9 4.0 38 41-80 10-48 (74)
36 3oja_B Anopheles plasmodium-re 77.4 13 0.00043 35.5 9.9 64 180-246 508-571 (597)
37 2w6b_A RHO guanine nucleotide 77.3 10 0.00035 27.6 7.0 41 168-216 5-45 (56)
38 2dkl_A Trinucleotide repeat co 77.1 2.7 9.2E-05 32.4 4.2 41 41-83 22-62 (85)
39 2dna_A Unnamed protein product 77.0 1.8 6.3E-05 32.3 3.2 35 43-79 22-57 (67)
40 1nkp_B MAX protein, MYC proto- 73.7 6.6 0.00023 29.2 5.5 44 196-239 38-81 (83)
41 2dai_A Ubadc1, ubiquitin assoc 72.5 4.1 0.00014 31.2 4.2 37 41-79 30-66 (83)
42 1hjb_A Ccaat/enhancer binding 71.9 12 0.00042 29.0 6.8 41 184-234 39-79 (87)
43 2dfs_A Myosin-5A; myosin-V, in 69.7 26 0.00089 37.5 10.9 25 179-203 989-1013(1080)
44 1gk7_A Vimentin; intermediate 69.7 4.2 0.00014 27.3 3.2 28 219-246 6-33 (39)
45 1hjb_A Ccaat/enhancer binding 68.6 9.7 0.00033 29.6 5.6 27 179-205 48-74 (87)
46 2zxx_A Geminin; coiled-coil, c 68.1 13 0.00043 28.8 6.0 38 209-246 24-61 (79)
47 3iox_A AGI/II, PA; alpha helix 67.7 57 0.002 32.6 12.1 43 155-202 20-62 (497)
48 2lbc_A Ubiquitin carboxyl-term 65.1 6.3 0.00021 31.5 4.0 37 41-79 79-115 (126)
49 1vdl_A Ubiquitin carboxyl-term 65.0 7.8 0.00027 30.0 4.3 39 41-79 25-63 (80)
50 1ci6_A Transcription factor AT 64.5 37 0.0013 24.4 8.0 41 179-229 21-61 (63)
51 1a93_B MAX protein, coiled coi 64.3 10 0.00035 25.2 4.1 22 218-239 13-34 (34)
52 4ae4_A Ubiquitin-associated pr 63.3 5.6 0.00019 32.2 3.4 35 43-79 79-113 (118)
53 2cwb_A Chimera of immunoglobul 62.5 5.2 0.00018 32.3 3.1 36 42-79 68-104 (108)
54 1gd2_E Transcription factor PA 61.7 13 0.00043 27.9 4.8 23 179-201 48-70 (70)
55 1ci6_A Transcription factor AT 60.1 11 0.00037 27.3 4.1 26 179-204 35-60 (63)
56 3oja_B Anopheles plasmodium-re 59.5 58 0.002 30.9 10.3 31 180-210 529-559 (597)
57 2oqq_A Transcription factor HY 59.2 11 0.00037 26.1 3.7 32 212-246 6-37 (42)
58 1aip_C EF-TS, elongation facto 59.1 4.7 0.00016 35.7 2.4 27 59-85 21-47 (196)
59 1gu4_A CAAT/enhancer binding p 58.7 9.8 0.00033 29.0 3.8 23 179-201 48-70 (78)
60 2w83_C C-JUN-amino-terminal ki 57.6 41 0.0014 25.9 7.1 52 189-240 10-72 (77)
61 1xb2_B EF-TS, elongation facto 56.8 5.3 0.00018 37.0 2.4 21 59-79 22-42 (291)
62 2j5u_A MREC protein; bacterial 55.3 8.6 0.00029 34.4 3.5 36 194-229 25-60 (255)
63 1v92_A NSFL1 cofactor P47; 3-h 55.2 8.9 0.0003 25.2 2.8 36 43-79 8-43 (46)
64 4emc_A Monopolin complex subun 54.9 44 0.0015 29.5 7.9 38 179-216 25-62 (190)
65 1wgn_A UBAP1, ubiquitin associ 54.6 7.1 0.00024 29.1 2.4 34 44-79 23-56 (63)
66 1nkp_A C-MYC, MYC proto-oncoge 52.2 43 0.0015 25.5 6.5 43 197-239 44-86 (88)
67 3he5_B Synzip2; heterodimeric 51.8 59 0.002 22.8 6.6 41 183-240 5-45 (52)
68 1gu4_A CAAT/enhancer binding p 51.3 15 0.00051 28.0 3.8 39 182-230 37-75 (78)
69 2cp8_A NEXT to BRCA1 gene 1 pr 50.0 14 0.00049 26.5 3.3 37 43-81 12-49 (54)
70 3s4r_A Vimentin; alpha-helix, 49.9 12 0.00042 29.0 3.2 27 220-246 10-36 (93)
71 4fla_A Regulation of nuclear P 49.6 1.2E+02 0.0039 25.5 11.8 74 157-230 67-142 (152)
72 3vp9_A General transcriptional 49.5 39 0.0013 26.7 6.0 41 201-241 28-83 (92)
73 1vek_A UBP14, ubiquitin-specif 49.1 20 0.0007 27.2 4.3 37 41-79 30-67 (84)
74 4dzn_A Coiled-coil peptide CC- 48.3 28 0.00096 22.5 4.1 24 179-202 7-30 (33)
75 2ooa_A E3 ubiquitin-protein li 48.1 19 0.00065 25.9 3.6 39 42-82 13-51 (52)
76 2yy0_A C-MYC-binding protein; 47.8 20 0.00069 25.3 3.8 24 179-202 24-47 (53)
77 1tr8_A Conserved protein (MTH1 47.6 13 0.00044 29.5 3.0 33 44-77 69-101 (102)
78 1oai_A Nuclear RNA export fact 47.2 19 0.00064 25.8 3.6 31 52-82 18-48 (59)
79 1wlq_A Geminin; coiled-coil; 2 47.1 44 0.0015 26.0 5.8 35 211-245 30-64 (83)
80 3qne_A Seryl-tRNA synthetase, 46.3 1.1E+02 0.0039 30.0 10.1 57 179-242 45-101 (485)
81 1nlw_A MAD protein, MAX dimeri 46.1 48 0.0016 24.9 5.9 39 197-235 39-77 (80)
82 2wt7_A Proto-oncogene protein 45.7 79 0.0027 22.5 7.6 41 179-229 21-61 (63)
83 4dzn_A Coiled-coil peptide CC- 44.7 22 0.00076 23.0 3.2 22 182-203 3-24 (33)
84 1uii_A Geminin; human, DNA rep 44.1 46 0.0016 25.9 5.6 23 180-202 45-67 (83)
85 1r8i_A TRAC; VIRB5, helical bu 44.0 18 0.00061 31.3 3.6 34 220-253 16-49 (213)
86 4ae4_A Ubiquitin-associated pr 43.6 16 0.00055 29.5 3.1 38 41-80 9-46 (118)
87 1deb_A APC protein, adenomatou 42.3 93 0.0032 22.4 7.2 45 185-232 7-51 (54)
88 2lva_A Ubiquitin carboxyl-term 48.2 5.3 0.00018 33.4 0.0 43 41-83 19-61 (129)
89 3a2a_A Voltage-gated hydrogen 41.9 82 0.0028 23.0 6.2 39 189-230 12-50 (58)
90 2d9s_A CBL E3 ubiquitin protei 41.5 26 0.00091 25.2 3.6 35 44-80 13-47 (53)
91 1t2k_D Cyclic-AMP-dependent tr 41.3 89 0.0031 21.9 6.9 38 181-228 22-59 (61)
92 1uii_A Geminin; human, DNA rep 40.9 61 0.0021 25.2 5.8 24 179-202 51-74 (83)
93 3e7l_A Transcriptional regulat 40.6 6.8 0.00023 27.4 0.3 26 53-78 18-43 (63)
94 4emc_A Monopolin complex subun 40.5 1E+02 0.0035 27.2 7.9 48 190-240 22-69 (190)
95 2v4h_A NF-kappa-B essential mo 39.4 1.5E+02 0.0052 24.0 11.3 20 226-245 90-109 (110)
96 2dal_A Protein KIAA0794; FAS a 39.0 28 0.00095 24.8 3.4 38 41-79 16-53 (62)
97 2dzl_A Protein FAM100B; UBA-li 38.6 30 0.001 25.2 3.6 37 42-79 19-55 (66)
98 1go4_E MAD1 (mitotic arrest de 38.3 1.4E+02 0.0048 23.7 7.7 66 181-246 12-95 (100)
99 2wvr_A Geminin; DNA replicatio 38.1 50 0.0017 29.6 5.6 24 179-202 113-136 (209)
100 3nmd_A CGMP dependent protein 37.9 89 0.003 23.6 6.2 22 211-232 46-67 (72)
101 2akf_A Coronin-1A; coiled coil 37.8 51 0.0018 21.3 4.1 23 219-241 6-28 (32)
102 1i84_S Smooth muscle myosin he 37.5 2.4E+02 0.0083 30.1 11.7 14 54-67 695-708 (1184)
103 2dq0_A Seryl-tRNA synthetase; 36.3 1.9E+02 0.0066 27.8 9.9 61 181-241 38-98 (455)
104 4ath_A MITF, microphthalmia-as 36.3 1.3E+02 0.0044 23.3 7.0 44 197-240 31-77 (83)
105 1ses_A Seryl-tRNA synthetase; 35.5 1.2E+02 0.0041 28.8 8.2 61 179-241 33-93 (421)
106 1umq_A Photosynthetic apparatu 35.3 16 0.00055 27.6 1.7 25 54-78 41-65 (81)
107 1jnm_A Proto-oncogene C-JUN; B 35.2 58 0.002 23.0 4.6 22 181-202 22-43 (62)
108 2dam_A ETEA protein; KIAA0887, 35.1 35 0.0012 24.8 3.5 39 41-79 19-57 (67)
109 2dfs_A Myosin-5A; myosin-V, in 34.8 1.7E+02 0.006 31.3 10.1 17 54-71 673-689 (1080)
110 2yy0_A C-MYC-binding protein; 34.7 66 0.0022 22.6 4.7 26 213-238 20-45 (53)
111 3a7p_A Autophagy protein 16; c 34.5 2.2E+02 0.0074 24.3 9.4 21 220-240 104-124 (152)
112 3oja_A Leucine-rich immune mol 34.5 1.3E+02 0.0043 28.1 8.1 30 217-246 426-455 (487)
113 3k9o_A Ubiquitin-conjugating e 33.5 42 0.0014 28.6 4.3 34 44-79 167-200 (201)
114 2oo9_A E3 ubiquitin-protein li 33.2 40 0.0014 23.7 3.3 28 53-80 15-42 (46)
115 2l5g_B Putative uncharacterize 33.1 94 0.0032 21.4 5.1 29 213-241 10-38 (42)
116 1am9_A Srebp-1A, protein (ster 32.6 1E+02 0.0035 22.9 5.8 34 197-230 42-75 (82)
117 3hx3_A Retinaldehyde-binding p 32.3 41 0.0014 30.2 4.2 30 51-80 87-116 (316)
118 2qsf_X RAD23, UV excision repa 32.0 47 0.0016 28.6 4.3 36 42-79 132-167 (171)
119 4h22_A Leucine-rich repeat fli 31.6 2E+02 0.0069 23.1 9.9 62 167-238 11-77 (103)
120 4a5u_A RNA replicase polyprote 31.5 10 0.00036 32.7 0.1 74 5-81 23-118 (160)
121 2wt7_A Proto-oncogene protein 31.3 1.4E+02 0.0048 21.1 7.1 27 179-205 35-61 (63)
122 2lbc_A Ubiquitin carboxyl-term 31.2 29 0.00098 27.5 2.7 37 42-80 5-42 (126)
123 1aua_A Phosphatidylinositol tr 30.3 53 0.0018 28.7 4.5 37 44-80 34-76 (296)
124 2jp7_A MRNA export factor MEX6 30.2 36 0.0012 24.3 2.8 29 52-80 17-45 (57)
125 3m9b_A Proteasome-associated A 29.4 63 0.0022 29.6 4.9 21 220-240 76-96 (251)
126 2zxx_A Geminin; coiled-coil, c 28.2 1E+02 0.0035 23.7 5.1 24 179-202 39-62 (79)
127 3hnw_A Uncharacterized protein 27.3 2.6E+02 0.0087 22.9 8.4 25 149-173 62-86 (138)
128 3e21_A HFAF1, FAS-associated f 27.0 56 0.0019 22.4 3.2 35 42-76 7-41 (45)
129 3v6i_A V-type ATP synthase sub 26.8 2.7E+02 0.0091 22.9 9.3 10 155-164 10-19 (187)
130 3nr7_A DNA-binding protein H-N 26.1 2.2E+02 0.0075 21.8 6.8 37 201-237 34-70 (86)
131 2jn6_A Protein CGL2762, transp 26.0 2.1 7.2E-05 31.7 -4.6 28 179-206 64-91 (97)
132 4e61_A Protein BIM1; EB1-like 25.9 1E+02 0.0034 24.9 4.9 27 178-204 8-34 (106)
133 1g2h_A Transcriptional regulat 25.8 17 0.00058 25.3 0.4 27 51-78 18-44 (61)
134 1dip_A Delta-sleep-inducing pe 25.6 26 0.00088 27.0 1.4 27 220-246 16-42 (78)
135 1ntc_A Protein (nitrogen regul 25.1 19 0.00065 26.8 0.6 26 53-78 50-75 (91)
136 2juj_A E3 ubiquitin-protein li 24.9 52 0.0018 23.9 2.8 37 44-82 11-47 (56)
137 3ghg_A Fibrinogen alpha chain; 24.3 3.4E+02 0.012 27.5 9.4 21 220-240 132-152 (562)
138 1wt6_A Myotonin-protein kinase 23.9 2.5E+02 0.0086 21.7 7.2 43 186-238 29-71 (81)
139 3ghg_A Fibrinogen alpha chain; 23.9 3.7E+02 0.013 27.3 9.5 103 58-216 50-152 (562)
140 2oxj_A Hybrid alpha/beta pepti 23.9 1.4E+02 0.0048 19.7 4.5 14 187-200 7-20 (34)
141 2j5u_A MREC protein; bacterial 23.6 50 0.0017 29.4 3.1 15 180-194 25-39 (255)
142 2dgc_A Protein (GCN4); basic d 23.6 1E+02 0.0036 22.1 4.3 24 179-202 28-51 (63)
143 1m1j_C Fibrinogen gamma chain; 23.3 5E+02 0.017 24.9 11.0 18 267-284 163-180 (409)
144 3mq7_A Bone marrow stromal ant 23.1 2.2E+02 0.0074 23.5 6.5 33 214-246 73-105 (121)
145 1eto_A FIS, factor for inversi 22.9 37 0.0012 26.2 1.8 26 53-78 57-82 (98)
146 2oqq_A Transcription factor HY 22.8 1.9E+02 0.0065 19.9 5.7 26 179-204 15-40 (42)
147 1wlq_A Geminin; coiled-coil; 2 22.6 2.7E+02 0.0092 21.6 6.6 23 179-201 43-65 (83)
148 2wg5_A General control protein 22.5 86 0.0029 24.6 4.0 37 207-246 5-41 (109)
149 1zxa_A CGMP-dependent protein 22.2 70 0.0024 23.8 3.2 24 213-236 33-56 (67)
150 3cvf_A Homer-3, homer protein 22.2 2.6E+02 0.009 21.2 7.1 23 183-205 8-30 (79)
151 3m9b_A Proteasome-associated A 22.0 1.4E+02 0.0047 27.3 5.7 27 220-246 69-95 (251)
152 3cqx_C BAG family molecular ch 21.8 1.3E+02 0.0046 23.5 4.8 53 140-196 12-79 (88)
153 1wle_A Seryl-tRNA synthetase; 21.1 4.4E+02 0.015 25.8 9.5 27 215-241 119-145 (501)
154 1gmj_A ATPase inhibitor; coile 21.0 2.9E+02 0.01 21.4 6.6 29 212-240 51-79 (84)
155 1nkp_B MAX protein, MYC proto- 20.9 1.8E+02 0.0063 21.2 5.3 24 179-202 52-75 (83)
156 3tnu_A Keratin, type I cytoske 20.9 3.2E+02 0.011 21.7 8.3 18 188-205 52-69 (131)
157 3c3f_A Alpha/beta peptide with 20.3 1.8E+02 0.0063 19.1 4.5 10 210-219 2-11 (34)
158 2ve8_A FTSK, DNA translocase F 20.3 50 0.0017 24.9 2.0 13 158-170 39-51 (73)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=86.03 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=41.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+.
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 667899999999999999999999999999999999999987653
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=98.95 E-value=5.7e-10 Score=81.97 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=41.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 455899999999999999999999999999999999999987765
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.93 E-value=1.9e-06 Score=62.76 Aligned_cols=39 Identities=33% Similarity=0.578 Sum_probs=30.2
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
..+..|+.+||+||+++|+.+|++++.++|+||.+|.++
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 347889999999999999999999999999999999775
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.62 E-value=4.2e-05 Score=54.43 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
+..|..+||..+...++.+|+.|++|+|.||..|.+.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6789999999999999999999999999999999874
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.61 E-value=0.0017 Score=49.46 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
...+.+++.|||++....+++.|+.+|+|.+.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 667999999999999999999999999999999999988
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.19 E-value=0.057 Score=42.06 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 162 RvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
-+|+.+|.=|-+..-. + ++.|...||++...|..+|.-++. .| +...+|.++||+-...+|++||.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~------~~----~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QR----EELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777765555 4 899999999999999999876653 23 678889999999999999999987
No 7
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=93.86 E-value=0.082 Score=34.18 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL 77 (285)
..|.+|..+ +.+++...+||..|++|++.|+..|
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357889888 8999999999999999999999876
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.58 E-value=0.082 Score=40.07 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..| +++++.+.+||..|++|++.|+..|..
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568899988 789999999999999999999999876
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.19 E-value=1.1 Score=39.50 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 182 EHASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAvaIQh-eR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
=+.-|+.++..|..|..-+|.=+..++ +-.+.....+.|+.+|+....+|+.+||.||+.|.-|-
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 355566666666666666655443332 22334455677999999999999999999999998775
No 10
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.73 E-value=0.083 Score=40.62 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=35.1
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+++.|+..||.+...||...+-+.++++|+.|..|.+
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4899999999999999999999999999999999976
No 11
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.99 E-value=0.49 Score=34.53 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=40.2
Q ss_pred CCcccccCCCCCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhh
Q 023249 24 AKRSRCSTFGSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (285)
Q Consensus 24 sKR~Rcsss~sp~r~~~~~~l~~L~~lFP~md~qvle~aLe~cgn-dlDaAIksL~~ 79 (285)
+||.+-.... ....+..|.+|..+ +++++...+||..||| |++.|+.-|.+
T Consensus 6 ~~r~~t~~ya---~~~~e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 6 SGRNRQQRPG---TIKHGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSCCSCCSSC---SSSCCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred ccchhhhccc---ccCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6776543332 22336779999998 7889999999999998 99999999976
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=91.87 E-value=0.21 Score=35.03 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=32.4
Q ss_pred CCcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+.-|.+|..+ +. |++...+||..||+|++.||..|..
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3458999998 78 9999999999999999999998854
No 13
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=91.66 E-value=0.2 Score=35.17 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=32.0
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.-|.+|..+ +. |++...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347888888 67 9999999999999999999999876
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.63 E-value=0.14 Score=37.09 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4668999998 677899999999999999999999977
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.36 E-value=0.21 Score=37.99 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=32.0
Q ss_pred CCcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+.-|.+|..| ++ |++...+||..+++|++.||..|..
T Consensus 30 e~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3357888888 54 7899999999999999999999986
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.35 E-value=0.25 Score=32.85 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=30.6
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 6 ~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 347788887 678899999999999999999988754
No 17
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.09 E-value=1.3 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQhe-R~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+.-|+.+..+|..|.--+|.=+.-++. -.+..-..+.|+.+|+..-..|+.+||.||+.|.-|-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 445777777777777777765554432 2334455677999999999999999999999998764
No 18
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.57 E-value=0.28 Score=34.86 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.8
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 42 ~~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~L 80 (285)
.-|.+|..+ ++ |.+...+||..|++|++.||..|...
T Consensus 11 ~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 358999998 56 67788999999999999999999874
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.08 E-value=0.34 Score=35.40 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..| +++.....+||..|++|++.|+.-|.+
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4567888888 789999999999999999999999876
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=89.55 E-value=0.45 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.8
Q ss_pred cHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~ 79 (285)
-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 10 ~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 47888887 44 7888999999999999999998853
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=89.37 E-value=0.35 Score=33.43 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457888888 789999999999999999999998865
No 22
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.60 E-value=0.45 Score=34.86 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 567899999999999999999999999 99999998877444
No 23
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.38 E-value=0.58 Score=37.87 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.7
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
-|..|..+ .+++++-...||++|++||..||..|.+
T Consensus 42 kVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 42 KVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46667777 6889999999999999999999999986
No 24
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=87.08 E-value=0.67 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.1
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~m-d~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.-|.+|..+ +. |.+...+||..+++|++.||+.|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357889988 44 7889999999999999999999865
No 25
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=86.86 E-value=0.31 Score=36.23 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=31.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~ 81 (285)
...|..||.. -+....--.+||++|++||+.||.-|..-.
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4568888876 345555678999999999999999998743
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.28 E-value=1.7 Score=31.58 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhch-hhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHD-NKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cg-ndlDaAIksL~~ 79 (285)
+..|.+|..+ ++++...++||..|| +|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5678999998 778899999999994 899999999987
No 27
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.64 E-value=1.2 Score=33.00 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
++.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 556899999999999999999999999 99999999887555
No 28
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=82.15 E-value=1 Score=33.09 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
++.+++++.+||+++...+..-|+.. ++++..|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 45689999999999999999999988 589999987754
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.00 E-value=10 Score=31.46 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=64.6
Q ss_pred CChhhhHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023249 134 TDGSKWVDLFVHEMMSA---ADLDDARGRAARILEVFERSIITNSKAS-----KELEHASLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 134 ~~g~eWVEl~V~EM~sA---sd~dDARaRAsRvLEafEKsI~~rs~aa-----~~kEn~~LKe~l~~l~~eN~iLKRAva 205 (285)
..-+..|+-=++||... ..+++-| .+|.+.-.-+ .++++..|+++++.+.+|..-||-=+.
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~r-----------~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAEL-----------RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777754 3344333 3444443331 677888888888888888888886333
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 206 IQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
-- +-.+++..+|+..|+.-+...|+++..||..+
T Consensus 100 ~~---~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 100 AA---QIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22456777889999999999999999998653
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.13 E-value=1.7 Score=33.64 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..| ++++..+++||..|++|++-|+.-|..
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999999 789999999999999999999999987
No 31
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.12 E-value=3.5 Score=30.03 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=34.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgn-dlDaAIksL~~L 80 (285)
+..|.+|..+ ++++...++||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999997 7888999999999999 999999999873
No 32
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.46 E-value=1.7 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4568888887 567799999999997 89999998854
No 33
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=80.39 E-value=0.96 Score=31.10 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.7
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.|.+|..| +.++..+.+||.+||+|.+.|..-|-.
T Consensus 7 aI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35667777 788999999999999999999988854
No 34
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=78.41 E-value=2.4 Score=31.60 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..+ +++++...+||..||||++.|+.-|.+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5568999988 678999999999999999999999876
No 35
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.41 E-value=2.2 Score=31.86 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgn-dlDaAIksL~~L 80 (285)
+..|.+|..| ++++...++||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5668999998 7789999999999997 899999999873
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.38 E-value=13 Score=35.51 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.++...++++.+.+.+++..+++++. +.+++++...+|+..+++.+..-++++..|...|-.++
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEAD---AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhh---hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33455555566666666666666552 22244444445555555555555555555555544443
No 37
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.30 E-value=10 Score=27.61 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=28.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 023249 168 ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (285)
Q Consensus 168 EKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~ 216 (285)
|||++.-+-+ ||-|+..|.+||.-||+++---..=.+++|.
T Consensus 5 EKSlVDtVYa--------LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 5 SKSLVDTVYA--------LKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677666666 8889999999999999988543322334443
No 38
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.13 E-value=2.7 Score=32.40 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~ 83 (285)
+..|.+|..+ +++++..++||..|++|++.|+.-|.+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 4568889998 7788999999999999999999999885443
No 39
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.04 E-value=1.8 Score=32.31 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~l-FP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
-|.+|+.+ | .|.+...+||.+|++|++.||..|..
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47778876 4 57888899999999999999999987
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=73.67 E-value=6.6 Score=29.23 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 196 DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 196 eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
--.||+.|+..=..-+.+.+....|+..|++...+.+.++.+|+
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688888876666666666666777777777777777776654
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.49 E-value=4.1 Score=31.18 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..| ++++....+||..|++|++.|+.-|.+
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999998 788899999999999999999999987
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.89 E-value=12 Score=29.03 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 023249 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (285)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEq 234 (285)
..+......|..||..|+.=|. ....|++.||+++.|..++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcHH
Confidence 3445566667777776665442 3555677777777766554
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.69 E-value=26 Score=37.51 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRA 203 (285)
+++|+..|+++++.+.+|+.-|+..
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777766554
No 44
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=69.69 E-value=4.2 Score=27.34 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 219 KEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.++|.|..-++-|=++||.||..|-.|.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le 33 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILL 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888899999999999999998876
No 45
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.58 E-value=9.7 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAva 205 (285)
+.+||..|+.+++.|..|...||..|.
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998764
No 46
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=68.12 E-value=13 Score=28.75 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=26.4
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 209 ERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 209 eR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+|++.+++.-.|..+|.+.|.+.++.|.+|+..|-.|.
T Consensus 24 ~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 24 QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777776665
No 47
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=67.66 E-value=57 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 155 DARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 155 DARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+.+..=+.+-+++|+.+.+.-+ +|+.+|.+.+++.+.|.-.|-
T Consensus 20 rvqkana~aka~Ye~~~ae~~a-----~n~~i~aeNeaikkrNa~aka 62 (497)
T 3iox_A 20 RVQKANADAKAAYEAAVAANNA-----ANAALTAENTAIKKRNADAKA 62 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Confidence 3444445667788888777544 344444444444444444433
No 48
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=65.12 E-value=6.3 Score=31.45 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+..|.+|..+ +.++....+||..||||++.|+.-|..
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5568999988 778999999999999999999999976
No 49
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.01 E-value=7.8 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
..+|.+|+.+----|+++|..||.++..||..|+--|.+
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 457899999999999999999999999999999999987
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.48 E-value=37 Score=24.39 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
-..+...|..+++.|..+|.-|+.=+ +....|++.||+++.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 44466677777777777777776432 334456777777664
No 51
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.33 E-value=10 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023249 218 EKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 218 ~~El~~Lkqlv~qYQEqir~LE 239 (285)
++++.+||..-...++|||+||
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 3456666667777777888776
No 52
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=63.35 E-value=5.6 Score=32.20 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=28.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.+..|..+ +.++..+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578999999999999999999998754
No 53
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=62.55 E-value=5.2 Score=32.29 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.2
Q ss_pred CcHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~l-FP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.-|.+|+.| | .|++...+||..|+.|++.||+.|..
T Consensus 68 ~qL~qL~eMGF--~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 68 PQLQQLRDMGI--QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHTTTC--CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357778876 3 36789999999999999999999976
No 54
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.67 E-value=13 Score=27.86 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+..||..|++++..|..||..||
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45556666666666666655543
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.09 E-value=11 Score=27.26 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
+.+||..|+.++..|-.|+..||..+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998765
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.51 E-value=58 Score=30.91 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023249 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR 210 (285)
+++...++++++.+.+|+.-|++-+..+-++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 3333444444444445544444444443333
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.17 E-value=11 Score=26.09 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 212 LEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 212 ~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|+|.+.++++. ..++..++|.||+.-|+-|+
T Consensus 6 ~eLE~r~k~le~---~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLEN---KNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHH
Confidence 355666666555 88888999999999999888
No 58
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=59.13 E-value=4.7 Score=35.66 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHhhchhhHHHHHHHHhhhccccc
Q 023249 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (285)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (285)
-.+||++|++|+|.||+-|..--+..+
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akA 47 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKA 47 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchh
Confidence 468999999999999999998555444
No 59
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.74 E-value=9.8 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+.+||..|+.+++.|..|...||
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=57.64 E-value=41 Score=25.89 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHH---HHHHHHH--------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 189 HLQSLLNDNQIL---KKAVSIQ--------HERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 189 ~l~~l~~eN~iL---KRAvaIQ--------heR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
+++.|+.||.=| |.|+.|. -+-..|++....|+..+++.....+++++.||.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444 3344433 345566677778888889999999999888875
No 61
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=56.76 E-value=5.3 Score=37.04 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHhhchhhHHHHHHHHhh
Q 023249 59 VKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 59 le~aLe~cgndlDaAIksL~~ 79 (285)
-.+||++|++|+|.||+-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 579999999999999999987
No 62
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=55.35 E-value=8.6 Score=34.40 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 194 LNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 194 ~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
.+||.-||+=++....+..+++...+|.++||+++.
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444333333444455555556666666543
No 63
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=55.22 E-value=8.9 Score=25.16 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=28.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 43 ~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
++.++..+ -+.++......|+.|+.||+.||..+.+
T Consensus 8 ~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 8 ALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35555554 5678999999999999999999987754
No 64
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.89 E-value=44 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~ 216 (285)
++.||..|.++++..-.|+.-||+=++-..+..+.+++
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 77788888888886666666666655544444444443
No 65
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.61 E-value=7.1 Score=29.10 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
|+.|-.+ +..++...+||.+||||++.|..-|-.
T Consensus 23 V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 23 VETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4555544 467888999999999999999998876
No 66
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.16 E-value=43 Score=25.47 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (285)
Q Consensus 197 N~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE 239 (285)
-.||++|+..=+.-+.+......++..|++-..+.+.+|..|+
T Consensus 44 ~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 44 VVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888875444444444445556666666666666666654
No 67
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.76 E-value=59 Score=22.81 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
|+-|+..+.+|.++|--| +| .-|.|..+++...+.|-+||-
T Consensus 5 naylrkkiarlkkdnlql--------er---------deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQL--------ER---------DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhh--------hh---------hHhhHHHHHHHHHHHHHHHHH
Confidence 566788888888888543 33 235666788888888888874
No 68
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.34 E-value=15 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
-...+++....|..||..|+.=|. ....|+..||+++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 345567788889999999886443 456678888777654
No 69
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.97 E-value=14 Score=26.48 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=30.2
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhchhhHHHHHHHHhhhc
Q 023249 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 43 ~l~~L~~l-FP~md~qvle~aLe~cgndlDaAIksL~~L~ 81 (285)
.+.+|+.+ | .|.+.-.++|..+|.|++.||..|..+.
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 45666665 3 2889999999999999999999998753
No 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.89 E-value=12 Score=28.99 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
+++.|.--++-|=++||.||..|-.|.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le 36 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILL 36 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899999999999999999997
No 71
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.60 E-value=1.2e+02 Score=25.49 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 157 RGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 157 RaRAsRvLEafEKsI~~rs~a-a-~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
|+.+.++++.||.+..-=..= . +..|...-+.-+..|-.=....+-.++-.-.+.+||..+...+.++|.-|..
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677776665441111 0 3333333222222222222233333333344455555555555555544443
No 72
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.45 E-value=39 Score=26.66 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHhHHHHH----HHHHHHHHH-----------HHHHHHHHHHHHHh
Q 023249 201 KKAVSIQHERHLEQEQKE----KEVELLKLV-----------ISQYQDQARNLEMK 241 (285)
Q Consensus 201 KRAvaIQheR~~e~e~~~----~El~~Lkql-----------v~qYQEqir~LE~n 241 (285)
..+-.+++.+.+|||-+. +|++++++. -.+|+|.|.+|...
T Consensus 28 ~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 28 QEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666543 455555553 46789999888654
No 73
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.13 E-value=20 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgn-dlDaAIksL~~ 79 (285)
+..|.+|..| ++++....+||..++| |++.|+.-|..
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999998 7888999999999874 99999999987
No 74
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.30 E-value=28 Score=22.52 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+++|...||..+..|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555555555555555555553
No 75
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=48.10 E-value=19 Score=25.87 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=32.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
+-+++|-.+ +.|++-+.+||..++||+|-|.--|.+..+
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 347777776 789999999999999999999998887643
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.84 E-value=20 Score=25.31 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
++.||..||.+++.|..++.-||+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887776
No 77
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=47.56 E-value=13 Score=29.52 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=24.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHH
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL 77 (285)
++-+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3444444 36677778899999999999999876
No 78
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=47.18 E-value=19 Score=25.81 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 52 P~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
=+|-.+-=++.|+++|=|++.|++.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4688888999999999999999999999863
No 79
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=47.12 E-value=44 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023249 211 HLEQEQKEKEVELLKLVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 211 ~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL 245 (285)
++.+++.-+|..+|...+.+-++.|.+|...|--|
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333
No 80
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.31 E-value=1.1e+02 Score=30.05 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
++.|...|+.+...+.++.+-+|+. ..+.++...|+.+||..+...+++++.+|..-
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~-------~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKA-------KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555541 12345556677777778877777777776543
No 81
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=46.13 E-value=48 Score=24.86 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 023249 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (285)
Q Consensus 197 N~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqi 235 (285)
-.||++|...=+.-+.+-....+|..+|+.-..+-+.++
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888876333333333334444455444444444443
No 82
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.65 E-value=79 Score=22.46 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~ 229 (285)
-......|..+...|..+|.-|+.-+ +....|+.+|++++.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 44456667777777777777776543 334456666666653
No 83
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.69 E-value=22 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 023249 182 EHASLKEHLQSLLNDNQILKKA 203 (285)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRA 203 (285)
|...||+.+..|.+|..-||=-
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877743
No 84
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=44.06 E-value=46 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHH
Q 023249 180 ELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
=+||+-|.++++.+-.|+..||.
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777776666666653
No 85
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=44.01 E-value=18 Score=31.28 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccch
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILNGISEMGS 253 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~~~~~~~~ 253 (285)
+++++++.+.+|++||.+++..==+|+|+..+|.
T Consensus 16 q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~ 49 (213)
T 1r8i_A 16 QLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGD 49 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHH
Confidence 3444455555555555555444445677666665
No 86
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=43.63 E-value=16 Score=29.47 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
..+|.+|..+ +.+...+.+||.+||||.+.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3456777776 5568899999999999999999999875
No 87
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.31 E-value=93 Score=22.36 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 023249 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (285)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQ 232 (285)
-|-.|++.|..||.-|+|-+.---..... ...|-..+|.++.+.|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lsk---LE~ets~mKevlk~lq 51 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTK---LETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHH---HHhhhhhHHHHHHHHc
Confidence 35668899999999998865432222222 2235555555555544
No 88
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=48.22 E-value=5.3 Score=33.43 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=38.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L~ 83 (285)
..+|-+|+.|==-=|+++|..||.+|..||.-|+--|.+=+..
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 6688999999888899999999999999999999999874443
No 89
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.89 E-value=82 Score=22.99 Aligned_cols=39 Identities=36% Similarity=0.413 Sum_probs=21.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 189 ~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
|+.+|..-|.-| |-.|||- ...+-++.||...|..++-|
T Consensus 12 q~~kLKq~n~~L--~~kv~~L-e~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 12 QLLRLKQMNVQL--AAKIQHL-EFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555443 3345554 23345566777777666654
No 90
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.52 E-value=26 Score=25.19 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
+.+|-.+ +.|++-+.+||..++||+|.|.--|.+.
T Consensus 13 I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 13 IERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 6777776 7899999999999999999999988874
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.32 E-value=89 Score=21.87 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 023249 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (285)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv 228 (285)
.....|..+...|..+|.-|+.-| .....|+.+||++|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i----------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEV----------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 345556666666666666665322 23334556665554
No 92
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.89 E-value=61 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+|++...|++.+..+..+|.-||-
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666665554
No 93
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.60 E-value=6.8 Score=27.37 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45789999999999999999988774
No 94
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.52 E-value=1e+02 Score=27.22 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=35.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 190 l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
++.|..||..|..-+. .|..|.+...++++.||.-...+++++...+.
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e 69 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQAE 69 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4678889988887665 56666666777788888888888877765443
No 95
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.44 E-value=1.5e+02 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 023249 226 LVISQYQDQARNLEMKIRIL 245 (285)
Q Consensus 226 qlv~qYQEqir~LE~nNYaL 245 (285)
.-..+|++|++.|...|--|
T Consensus 90 ~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35567777888777766544
No 96
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.02 E-value=28 Score=24.81 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
+.++.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777765 5788999999999999999999988765
No 97
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.59 E-value=30 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.++.++..+ -+-++..-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456666655 6789999999999999999999998865
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.30 E-value=1.4e+02 Score=23.74 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH---Hh---hHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023249 181 LEHASLKEHLQSLLNDNQILKKAVSIQH---ER---HLEQEQ------------KEKEVELLKLVISQYQDQARNLEMKI 242 (285)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKRAvaIQh---eR---~~e~e~------------~~~El~~Lkqlv~qYQEqir~LE~nN 242 (285)
.+...||+.++.|-+||.=|++=..+.- ++ +-+|.. ...-.++.++.+.++|+.+..|-..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666665444321 22 223321 11233444556666666666665555
Q ss_pred cccc
Q 023249 243 RILN 246 (285)
Q Consensus 243 YaL~ 246 (285)
-+|.
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 5544
No 99
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=38.11 E-value=50 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
-=+||+-|.++++.+-.|+..||.
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~Lke 136 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKK 136 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888877777777763
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.88 E-value=89 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=13.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 023249 211 HLEQEQKEKEVELLKLVISQYQ 232 (285)
Q Consensus 211 ~~e~e~~~~El~~Lkqlv~qYQ 232 (285)
.++.+++..++++|+-.+++||
T Consensus 46 Ek~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566777777777765
No 101
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.83 E-value=51 Score=21.32 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023249 219 KEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 219 ~El~~Lkqlv~qYQEqir~LE~n 241 (285)
.++..|..+|...|+++.+||.+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999965
No 102
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=37.51 E-value=2.4e+02 Score=30.07 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=7.9
Q ss_pred CCHHHHHHHHhhch
Q 023249 54 VDPEVVKSVLGEHD 67 (285)
Q Consensus 54 md~qvle~aLe~cg 67 (285)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 45555555555555
No 103
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.29 E-value=1.9e+02 Score=27.78 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
++...++.+++.|..+.+.+-+.+..--....+.++...|+.+||..+....++++.+|..
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433211111234455566777777777777777776654
No 104
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=36.25 E-value=1.3e+02 Score=23.26 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 023249 197 NQILKKAVSIQHERHLEQEQKEKE---VELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 197 N~iLKRAvaIQheR~~e~e~~~~E---l~~Lkqlv~qYQEqir~LE~ 240 (285)
-+|||++|-.=..-++|.+-..++ ...|...-.++-..|+.||.
T Consensus 31 g~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 31 GTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 478999987544444443332222 22333344455556666664
No 105
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.50 E-value=1.2e+02 Score=28.82 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
+.++...++.+++.|..+.+.+-+.+.. ....+.++.-.|+.+||..+....++++.+|..
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777777666666666553 111233344456666777777777777666654
No 106
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.28 E-value=16 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 54 md~qvle~aLe~cgndlDaAIksL~ 78 (285)
++.++|+.+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 4678999999999999999988774
No 107
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.24 E-value=58 Score=23.01 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 023249 181 LEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 181 kEn~~LKe~l~~l~~eN~iLKR 202 (285)
.....|...+..|..+|.-|+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665553
No 108
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.10 E-value=35 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 41 ~~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
..+|.++..+=---|+.....+|+.++-||+.||..+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456777777655478999999999999999999998876
No 109
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=34.85 E-value=1.7e+02 Score=31.27 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=10.2
Q ss_pred CCHHHHHHHHhhchhhHH
Q 023249 54 VDPEVVKSVLGEHDNKIE 71 (285)
Q Consensus 54 md~qvle~aLe~cgndlD 71 (285)
+|..+|-.=|.-|| .|+
T Consensus 673 fd~~~V~~QLr~~G-vlE 689 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG-VLE 689 (1080)
T ss_dssp CCHHHHHHHHHTTT-HHH
T ss_pred cCHHhhHHHHhhcc-cHH
Confidence 56666666666666 444
No 110
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.74 E-value=66 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 213 EQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
|++...+|++.||+.+..-++++..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444
No 111
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.53 E-value=2.2e+02 Score=24.30 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~ 240 (285)
|+.-|+-.+..-+++++.||.
T Consensus 104 El~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 104 ALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.49 E-value=1.3e+02 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 217 KEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 217 ~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.+.|...+++....+|+++..|+..|--|.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLK 455 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhh
Confidence 334555677888888888888888776655
No 113
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=33.51 E-value=42 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
|..|..+ +.|+.-+..||..|+.|++.|+..|-.
T Consensus 167 V~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 167 IENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4444444 778888999999999999999988753
No 114
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=33.22 E-value=40 Score=23.67 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
+.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 15 Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 6789999999999999999999888764
No 115
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.12 E-value=94 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 213 EQEQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
.++.-.+|...-++.+..||.+++.||..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556688999999999999999999853
No 116
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=32.60 E-value=1e+02 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 023249 197 NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (285)
Q Consensus 197 N~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~q 230 (285)
-.||+.|+..=..-+.+.+....|+.+|+..+.+
T Consensus 42 a~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 42 SAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577777766555555555555555555554443
No 117
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=32.31 E-value=41 Score=30.20 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 51 FP~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
++..|...|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678999999999999999999999998774
No 118
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=32.02 E-value=47 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~ 79 (285)
.-|..|..| +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 347889888 799999999999999999999988865
No 119
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.63 E-value=2e+02 Score=23.07 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 167 FERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 167 fEKsI~~rs~a-----a~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
|-|+++..|-= ++.=+..-||-.++.+-....-|+| ++.++.+++..+|..++.-+.++..|
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666654432 1445666777777777666665554 55666666666666666555555544
No 120
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=31.48 E-value=10 Score=32.69 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=43.8
Q ss_pred cccccccccccCCCCC-CCCC---CcccccCCCCCCC----------------CCCCCcHHHHHhcCCC--CCHHHHHHH
Q 023249 5 VCGKRVGFEEICGSSS-PTSA---KRSRCSTFGSLVR----------------SGSDDPVSFLLQMFPD--VDPEVVKSV 62 (285)
Q Consensus 5 VcGkRs~fedl~~s~~-P~~s---KR~Rcsss~sp~r----------------~~~~~~l~~L~~lFP~--md~qvle~a 62 (285)
++|-=..|++|+|..- |.++ -|.||.++ |++- .++++|-+.|..+||| .|++-|++.
T Consensus 23 ~~GPv~~F~~LfPa~Y~~~ta~FltR~R~~~~-S~~P~P~~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n~ei~~~ 101 (160)
T 4a5u_A 23 AIGPVLPFEELHPRRYPENTATFLTRLRSLPS-NHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTL 101 (160)
T ss_dssp EEEEEEEHHHHSCCCCCTTSSCSEEEEECSCC-CCCCCCSSCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSSHHHHHH
T ss_pred ccCccccHHhhCCcccCCCCccccccccCCCC-CCCCCcchhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCchhhhhc
Confidence 3455568899887642 3322 79999776 4332 3337778889999998 555555432
Q ss_pred HhhchhhHHHHHHHHhhhc
Q 023249 63 LGEHDNKIEDAIDRLRVLS 81 (285)
Q Consensus 63 Le~cgndlDaAIksL~~L~ 81 (285)
. -.-|.=.|.-....++
T Consensus 102 -G-LSTDhltaLa~~~~~~ 118 (160)
T 4a5u_A 102 -G-LSTEHLTALAHLYNFQ 118 (160)
T ss_dssp -C-CCHHHHHHHHHHHTEE
T ss_pred -C-CcHHHHHHHHHHHheE
Confidence 1 1124445555555553
No 121
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.31 E-value=1.4e+02 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAva 205 (285)
+..||..|+.++..|..|..-||..|.
T Consensus 35 L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998887663
No 122
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=31.20 E-value=29 Score=27.53 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=29.4
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchh-hHHHHHHHHhhh
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgn-dlDaAIksL~~L 80 (285)
..|.+|..+ +.+....++||..||| |++.|+.-|...
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 445666664 4556889999999998 999999999773
No 123
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=30.25 E-value=53 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=30.2
Q ss_pred HHHHHhcC------CCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 44 VSFLLQMF------PDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 44 l~~L~~lF------P~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
|.+|+..+ +..|...|-+.|.+|..|++.|.+.|.+-
T Consensus 34 l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~ 76 (296)
T 1aua_A 34 LAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76 (296)
T ss_dssp HHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55665432 45899999999999999999999999763
No 124
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.16 E-value=36 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHhhchhhHHHHHHHHhhh
Q 023249 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (285)
Q Consensus 52 P~md~qvle~aLe~cgndlDaAIksL~~L 80 (285)
-.|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36888889999999999999999999996
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.37 E-value=63 Score=29.55 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~ 240 (285)
+++++++.+.+++++|.+|..
T Consensus 76 ~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 455555556666666665543
No 126
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.22 E-value=1e+02 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
+|++...+++.+..|..||..||-
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777778877777753
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.33 E-value=2.6e+02 Score=22.90 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=10.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHh
Q 023249 149 SAADLDDARGRAARILEVFERSIIT 173 (285)
Q Consensus 149 sAsd~dDARaRAsRvLEafEKsI~~ 173 (285)
.|-|+.|=--.+.+-.+.++.-+.+
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~ 86 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIEN 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333444445544444
No 128
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=27.02 E-value=56 Score=22.36 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=25.5
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHH
Q 023249 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDR 76 (285)
Q Consensus 42 ~~l~~L~~lFP~md~qvle~aLe~cgndlDaAIks 76 (285)
.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34555655433334589999999999999999854
No 129
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=26.77 E-value=2.7e+02 Score=22.92 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023249 155 DARGRAARIL 164 (285)
Q Consensus 155 DARaRAsRvL 164 (285)
||+++|.++|
T Consensus 10 eA~~~a~~I~ 19 (187)
T 3v6i_A 10 EVEAEIQALL 19 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 130
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=26.11 E-value=2.2e+02 Score=21.78 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 201 KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (285)
Q Consensus 201 KRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~ 237 (285)
++-=.|--+|..+++...++.++-...+.+|.++|..
T Consensus 34 eKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 34 EKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455678788777777777777788999988875
No 131
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.99 E-value=2.1 Score=31.68 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAvaI 206 (285)
..+|+..|+.++..|-.||.+||.+..-
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~~ 91 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCLE 91 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999987653
No 132
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.89 E-value=1e+02 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 178 SKELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 178 a~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
++++|....|+++..|..+..-||-.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888777776544
No 133
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.76 E-value=17 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 51 FP~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
...++.++|+.+|+.| .+...|.+.|.
T Consensus 18 l~~~Er~~I~~aL~~~-gn~~~aA~~LG 44 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY-PSTRKLAQRLG 44 (61)
T ss_dssp CSHHHHHHHHHHHHHS-CSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHhC
Confidence 3456789999999999 56777776653
No 134
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.60 E-value=26 Score=27.00 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
||.-||..+....+++..||.-|.-|+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777666
No 135
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.09 E-value=19 Score=26.81 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
.++.++|+.+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999988888764
No 136
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=24.90 E-value=52 Score=23.94 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 023249 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (285)
Q Consensus 44 l~~L~~lFP~md~qvle~aLe~cgndlDaAIksL~~L~L 82 (285)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.-.
T Consensus 11 Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 11 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4555544 789999999999999999999999988643
No 137
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.27 E-value=3.4e+02 Score=27.49 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023249 220 EVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~ 240 (285)
.++.|+..|..-..+|++||+
T Consensus 132 nIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 138
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.94 E-value=2.5e+02 Score=21.66 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (285)
Q Consensus 186 LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~~~~El~~Lkqlv~qYQEqir~L 238 (285)
+.++|......|.-+- .+.+|++.+++++.+ -+.+-+++++.|
T Consensus 29 i~EELs~vr~~ni~~e-------skL~eae~rn~eL~~---e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFA-------SQLREAEARNRDLEA---HVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3445545444444332 477888888888766 556666666654
No 139
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.94 E-value=3.7e+02 Score=27.31 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=68.4
Q ss_pred HHHHHHhhchhhHHHHHHHHhhhcccccchhcccCCCCCcccCCCCCCCCCCccCCCCCchhhhcccccccCCCCCCChh
Q 023249 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHTNFCGENITDGS 137 (285)
Q Consensus 58 vle~aLe~cgndlDaAIksL~~L~L~sa~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~ 137 (285)
.|...|..-+-||..-|.-|++.. +.-+.+. .+-.
T Consensus 50 rLQglLdkqErDltkrINELKnqL-EdlsKns--------------------------------------------Kdse 84 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSL-FEYQKNN--------------------------------------------KDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-THHHHHH--------------------------------------------HHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHH-HHHHhhc--------------------------------------------hhHH
Confidence 377788888999999999998843 2222221 2355
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 023249 138 KWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (285)
Q Consensus 138 eWVEl~V~EM~sAsd~dDARaRAsRvLEafEKsI~~rs~aa~~kEn~~LKe~l~~l~~eN~iLKRAvaIQheR~~e~e~ 216 (285)
.|+..++.++- .|....- ..+-.+.+-+.. +.+-+..||+.+..-+....+|+..|.-|+.-.|-+|.
T Consensus 85 qy~k~~~E~Lr---------~rq~q~~-dNdNtynE~S~E-LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 85 SLTTNIMEILR---------GDFSSAN-NRDNTYNRVSED-LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHTTS---------SHHHHHH-HHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------HHHHhhh-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766665552 2333332 344433333333 66677789999999888889999999999888877764
No 140
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.86 E-value=1.4e+02 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=6.2
Q ss_pred HHHHHHHHhhHHHH
Q 023249 187 KEHLQSLLNDNQIL 200 (285)
Q Consensus 187 Ke~l~~l~~eN~iL 200 (285)
..+++.|+.+|..|
T Consensus 7 E~kVEeLl~~n~~L 20 (34)
T 2oxj_A 7 EXKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhH
Confidence 33444444444433
No 141
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.65 E-value=50 Score=29.35 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q 023249 180 ELEHASLKEHLQSLL 194 (285)
Q Consensus 180 ~kEn~~LKe~l~~l~ 194 (285)
++||..||+++..|.
T Consensus 25 ~~eN~~Lk~e~~~l~ 39 (255)
T 2j5u_A 25 YTENQHLKERLEELA 39 (255)
T ss_dssp -CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 142
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.62 E-value=1e+02 Score=22.08 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
-+.....|..+++.|..+|.-|+.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777788888777776653
No 143
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.32 E-value=5e+02 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=10.2
Q ss_pred eEEEEEEeeCCCCCCccc
Q 023249 267 MMIIIVIVSDNRHSPMVV 284 (285)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ 284 (285)
.-|+..|-.++...|+.|
T Consensus 163 ~SGvY~I~p~~~~~pf~V 180 (409)
T 1m1j_C 163 KSGLYFIKPQKAKQSFLV 180 (409)
T ss_dssp SCEEEEECCTTCSSCEEE
T ss_pred CCeeEEEecCCCCCcEEE
Confidence 345555555665666654
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.08 E-value=2.2e+02 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 214 QEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 214 ~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.++..-|+..|+|.+-.--+.|.+|-..|-.|+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 344444888888888888888888888887777
No 145
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=22.92 E-value=37 Score=26.20 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHhhchhhHHHHHHHHh
Q 023249 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (285)
Q Consensus 53 ~md~qvle~aLe~cgndlDaAIksL~ 78 (285)
.++.++|+.+|+.||.+...|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 45678899999999999999988764
No 146
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.80 E-value=1.9e+02 Score=19.87 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKRAv 204 (285)
++.=|..|.+++.-|.+||..|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 55567778888888888888887654
No 147
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.59 E-value=2.7e+02 Score=21.56 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILK 201 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLK 201 (285)
+|++...+++++..|..+|.-||
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 148
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.51 E-value=86 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 207 QheR~~e~e~~~~El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
.|-|.|..++ ++..|++.+...+++|+.|...-|...
T Consensus 5 ~~~~~~~l~~---~~~~l~~~i~~lkeel~~L~~~P~~Vg 41 (109)
T 2wg5_A 5 HHHRMKQLED---KVEELLSKNYHLENEVARLRSPPLLVG 41 (109)
T ss_dssp ----CHHHHH---HHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 4667766655 455555677777777777776655554
No 149
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.23 E-value=70 Score=23.82 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 213 EQEQKEKEVELLKLVISQYQDQAR 236 (285)
Q Consensus 213 e~e~~~~El~~Lkqlv~qYQEqir 236 (285)
+++++..|+++|+..+++||.=++
T Consensus 33 ~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 33 RLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678899999999999987665
No 150
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.15 E-value=2.6e+02 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 023249 183 HASLKEHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAva 205 (285)
+..+-++++.+-..|.-|++=|.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~ 30 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLR 30 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 33344455555555555555443
No 151
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.98 E-value=1.4e+02 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 023249 220 EVELLKLVISQYQDQARNLEMKIRILN 246 (285)
Q Consensus 220 El~~Lkqlv~qYQEqir~LE~nNYaL~ 246 (285)
....|+..+.+.+.+|+.|+..+..|.
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334466777888888888887777777
No 152
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=21.81 E-value=1.3e+02 Score=23.52 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=37.6
Q ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHH-------------HHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 023249 140 VDLFVHEMMSA--ADLDDARGRAARILEV-------------FERSIITNSKASKELEHASLKEHLQSLLND 196 (285)
Q Consensus 140 VEl~V~EM~sA--sd~dDARaRAsRvLEa-------------fEKsI~~rs~aa~~kEn~~LKe~l~~l~~e 196 (285)
|..+..||.+- .|+.-||.|-...|.| ||..|..++.. .-+-.|.+|+.|++.
T Consensus 12 vn~lID~~v~k~~~D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlD----DQKkIkkRLe~Ll~~ 79 (88)
T 3cqx_C 12 ATRIIDEVVSKFLDDLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALE----DQKKIKRRLETLLRN 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHh----hHHHHHHHHHHHHHH
Confidence 44444444443 5889999999999865 88888887666 345667788888764
No 153
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.14 E-value=4.4e+02 Score=25.78 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023249 215 EQKEKEVELLKLVISQYQDQARNLEMK 241 (285)
Q Consensus 215 e~~~~El~~Lkqlv~qYQEqir~LE~n 241 (285)
++...|+.+||..+....++++.+|..
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666544
No 154
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.04 E-value=2.9e+02 Score=21.37 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023249 212 LEQEQKEKEVELLKLVISQYQDQARNLEM 240 (285)
Q Consensus 212 ~e~e~~~~El~~Lkqlv~qYQEqir~LE~ 240 (285)
.+.+....|+..|...+..-+..|+.|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555677777777888888888765
No 155
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.94 E-value=1.8e+02 Score=21.18 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 023249 179 KELEHASLKEHLQSLLNDNQILKK 202 (285)
Q Consensus 179 ~~kEn~~LKe~l~~l~~eN~iLKR 202 (285)
++.++..|+++++.|.++|.-|+.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666554
No 156
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.87 E-value=3.2e+02 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 023249 188 EHLQSLLNDNQILKKAVS 205 (285)
Q Consensus 188 e~l~~l~~eN~iLKRAva 205 (285)
-+++.+...|.-|.+.++
T Consensus 52 ~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 52 IELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 344444444555555443
No 157
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.31 E-value=1.8e+02 Score=19.14 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.2
Q ss_pred hhHhHHHHHH
Q 023249 210 RHLEQEQKEK 219 (285)
Q Consensus 210 R~~e~e~~~~ 219 (285)
|++.+|+++.
T Consensus 2 RMnQLEdKVE 11 (34)
T 3c3f_A 2 RMXQIEXKLE 11 (34)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 158
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=20.26 E-value=50 Score=24.93 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 023249 158 GRAARILEVFERS 170 (285)
Q Consensus 158 aRAsRvLEafEKs 170 (285)
+||+|++|.+|..
T Consensus 39 nRAArlid~lE~~ 51 (73)
T 2ve8_A 39 NRAARMIEAMEMA 51 (73)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 7999999999974
Done!