BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023251
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 13/237 (5%)
Query: 56 NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
NPID CWR D NW++NR +LADCA+GFG + +GG+ G Y VT D + VNP PGTLRY
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60
Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHG 174
+++ LWIIF+++M I+LK L + KTIDGRGA VH+ GGPC+ ++ V+++I+H
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 175 LNIHDCKKG--GNAMVRDS----PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL 228
L+IH C G+ +V +S P H DGD +++ T+ W+DH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285
+D GST ITISNN +H KVMLLGH DTY DK+M+VT+AFN FG QR+PR
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 75 LADCAIGFG--------KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWII 126
L D +GF + VGG G I V + + G +Y ++ D I+
Sbjct: 2 LNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEELEKYTTAEG--KYVIVVDGT--IV 57
Query: 127 FARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNA 186
F K E+ + S KTI G + + GG + I+ N+II ++
Sbjct: 58 F------EPKREIKVLSDKTIVGINDAKIVGGG--LVIKDAQNVIIRNIHFEGF------ 103
Query: 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246
+ D PR + D D +++ HIW+DH + N +DG VD S IT+S N
Sbjct: 104 YMEDDPRGKKY----DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFV 159
Query: 247 HHDKVMLLGHSDTYTQDKNMQ---VTIAFNHFGEGLVQRIPR 285
HDKV L+G SD ++ Q VT N+F + L+QR+PR
Sbjct: 160 DHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYF-KNLIQRMPR 200
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPR 285
HDK + G SD+ T D +++T+ N + + +VQR PR
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPR 303
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPR 285
HDK + G SD+ T D +++T+ N + + +VQ+ PR
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPR 303
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 25/175 (14%)
Query: 129 RDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMV 188
++ R+ ++ N+ TI G G + + GG I+ N+II + D
Sbjct: 115 KNQKARVMVDIPANT--TIVGSGTNAKVVGG-NFQIK-SDNVIIRNIEFQDAYDYFPQWD 170
Query: 189 RDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDA 231
+ W S D ++I GGTHIW+DHC+ ++ DG DA
Sbjct: 171 PTAGSSGNW--ASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDA 228
Query: 232 IHGSTAITISNNFMTHHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPR 285
+G+ IT+S N+ HD + G SD+ T D +++T+ N + + +VQR PR
Sbjct: 229 SNGANYITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPR 282
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 19/103 (18%)
Query: 201 SDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNN 243
S+ D +SI G +HIW+DH + ++ D DG +D + S ITIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 244 FMTHHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPR 285
T+HDKV L+G SD+ D +++VT+ N++ + + QR+PR
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPR 288
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 19/100 (19%)
Query: 204 DGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISNNFMT 246
D ++I GGTHIW+DHC+ ++ DG DA +G+ IT+S N+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 247 HHDKVMLLGHSDTYTQDK-NMQVTIAFNHFGEGLVQRIPR 285
HDK + G SD+ T D +++T+ N + + +VQ PR
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPR 282
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 21/109 (19%)
Query: 196 GWRTVSDGDGVSIFGGTH-IWVDHCSLSNCD-----------------DGLVDAIHGSTA 237
GW ++ D ++I G H +W+DH ++S+ + DG +D GS
Sbjct: 138 GWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDY 195
Query: 238 ITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPR 285
+TISN+ + HDK ML+GHSD+ +QDK FN+ + +R PR
Sbjct: 196 VTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPR 244
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 21/109 (19%)
Query: 196 GWRTVSDGDGVSIFGGTH-IWVDHCSLSNCD-----------------DGLVDAIHGSTA 237
GW ++ D ++I G H +W+DH ++S+ + DG +D GS
Sbjct: 138 GWN--AEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDY 195
Query: 238 ITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQRIPR 285
+TISN+ + HDK ML+GH+DT + QDK FN+ + +R PR
Sbjct: 196 VTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPR 244
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 49/224 (21%)
Query: 84 KNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNS 143
K A+ G D ++ G D+ K Y D+ + + ++ + S
Sbjct: 37 KKALNGTDSSAKIIKVTGPIDISGGKA----YTSFDDQ------------KARSQISIPS 80
Query: 144 FKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF----GWRT 199
TI G G++ G + I+ V N+I+ L I D H+ GW
Sbjct: 81 NTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIE--------TPVDVAPHYESGDGWN- 130
Query: 200 VSDGDGVSIFGGTHIWVDHCSLSNCD-----------------DGLVDAIHGSTAITISN 242
++ D I T++WVDH ++S+ DG +D GS +TIS
Sbjct: 131 -AEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISY 189
Query: 243 NFMTHHDKVMLLGHSDTYTQDKNMQVTIAF-NHFGEGLVQRIPR 285
+ HDK +L+GHSD+ + ++ + F N+ + + +R PR
Sbjct: 190 SRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPR 233
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 43/191 (22%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIP 284
F E + R+P
Sbjct: 200 RF-ENVESRVP 209
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 43/191 (22%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIP 284
F E + R+P
Sbjct: 200 RF-ENVESRVP 209
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 43/191 (22%)
Query: 111 GTLRYAVIQDE-PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTN 169
G + I+D W + A+ + I+ K ++ + +GA+ A + N
Sbjct: 45 GKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTI--------KGANGSAANFGIRVVGNAHN 96
Query: 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVDH----CS 220
+II + I + G D D +S+ G + IWVDH S
Sbjct: 97 VIIQNMTIGLLQGG-----------------EDADSISLEGNSSGEPSKIWVDHNTVFAS 139
Query: 221 LSNCD-------DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273
L+ C DG +D G +T+S N++ ++ KV L G+SD+ T++ + T N
Sbjct: 140 LTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHN 199
Query: 274 HFGEGLVQRIP 284
F E + R+P
Sbjct: 200 RF-ENVESRVP 209
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218
G I + NIII ++IH ++G + V+D ++W+DH
Sbjct: 94 GIGIRLSNAHNIIIQNVSIHHVREGEGTAIE----------VTDDS-------KNVWIDH 136
Query: 219 CSL---------SNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVT 269
S+ DGLVD + IT+S N +H K ML+GH+D + + ++T
Sbjct: 137 NEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD-KIT 195
Query: 270 IAFNHFGEGLVQRIP 284
N+F L R+P
Sbjct: 196 YHHNYF-NNLNSRVP 209
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 147 IDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG-WRTVSDGD 204
I G ++ I G GP ++ + ++I++G + G M+R P + V +
Sbjct: 151 IKGLMTNLIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFCPSCLNVFNNVQENK 210
Query: 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSD 258
SIF + D +L+ + L+ +HG I ISN +T + K + HSD
Sbjct: 211 DTSIFSRRAYFAD-PALTLMHE-LIHVLHGLYGIKISNLPITPNTKEFFMQHSD 262
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP D W + + R LA C +G AVGGR+ TD
Sbjct: 36 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 93
Query: 104 DVVNP 108
D NP
Sbjct: 94 DCYNP 98
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP D W + + R LA C +G AVGGR+ TD
Sbjct: 35 RQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 104 DVVNP 108
D NP
Sbjct: 93 DCYNP 97
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 29 RQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 86
Query: 104 DVVNP 108
D NP
Sbjct: 87 DCYNP 91
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 28 RQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 85
Query: 104 DVVNP 108
D NP
Sbjct: 86 DCYNP 90
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 202 DGDGVSIFGGTHIWVDHCSL----SNCD---------DGLVDAIHGSTAITISNNFMTHH 248
DGD + + ++WVDH L CD + VD S +T+S N++
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 249 DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIP 284
KV L G S + D +T N++ + + R+P
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND-VNARLP 220
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 44 RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDY 103
R++L YL NP + W + + R LA C +G AVGGR+ TD
Sbjct: 35 RQSLSYLE--AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 104 DVVNP 108
D NP
Sbjct: 93 DCYNP 97
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 202 DGDGVSIFGGTHIWVDHCSL----SNCD---------DGLVDAIHGSTAITISNNFMTHH 248
DGD + + ++WVDH L CD + VD S +T+S N++
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 249 DKVMLLGHSDTYTQDKNMQVTIAFNHFGE 277
KV L G S + D +T N++ +
Sbjct: 189 KKVGLDGSS---SSDTGRNITYHHNYYND 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,384,706
Number of Sequences: 62578
Number of extensions: 418980
Number of successful extensions: 848
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 28
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)