Query 023251
Match_columns 285
No_of_seqs 267 out of 919
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 2.7E-45 5.8E-50 341.4 18.1 173 85-285 47-235 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.5E-42 3.2E-47 308.6 10.3 155 121-285 1-164 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.3E-38 2.9E-43 281.4 16.5 132 137-285 10-150 (190)
4 TIGR03805 beta_helix_1 paralle 98.5 4.8E-06 1E-10 79.3 15.2 138 114-255 2-158 (314)
5 PLN02218 polygalacturonase ADP 98.1 4.5E-05 9.8E-10 75.9 14.2 97 161-276 217-314 (431)
6 PLN02188 polygalacturonase/gly 98.1 5.9E-05 1.3E-09 74.4 14.4 99 159-276 178-277 (404)
7 PLN02793 Probable polygalactur 98.1 8.4E-05 1.8E-09 74.2 14.8 100 160-279 201-301 (443)
8 PLN02155 polygalacturonase 98.0 0.00011 2.4E-09 72.3 14.2 101 159-279 168-269 (394)
9 PLN03003 Probable polygalactur 98.0 0.00013 2.9E-09 73.1 14.7 75 202-279 187-262 (456)
10 PF14592 Chondroitinas_B: Chon 97.9 9.6E-05 2.1E-09 73.3 11.5 163 112-281 6-213 (425)
11 PF00295 Glyco_hydro_28: Glyco 97.9 0.00014 3E-09 69.4 12.2 125 119-276 89-214 (326)
12 PF12708 Pectate_lyase_3: Pect 97.7 0.0017 3.6E-08 56.4 14.9 153 112-280 20-221 (225)
13 PLN03010 polygalacturonase 97.6 0.0015 3.3E-08 64.7 14.9 73 202-276 206-279 (409)
14 PLN02218 polygalacturonase ADP 97.5 0.0028 6.1E-08 63.2 14.1 120 121-276 146-284 (431)
15 TIGR03805 beta_helix_1 paralle 97.4 0.0018 3.9E-08 61.8 11.5 126 142-276 62-201 (314)
16 PF13229 Beta_helix: Right han 97.2 0.002 4.4E-08 52.3 8.7 20 161-180 2-21 (158)
17 PLN03003 Probable polygalactur 97.2 0.0059 1.3E-07 61.4 13.6 119 122-276 104-230 (456)
18 PLN02155 polygalacturonase 97.2 0.0077 1.7E-07 59.5 13.7 117 123-276 107-237 (394)
19 PLN02793 Probable polygalactur 97.0 0.019 4.1E-07 57.5 14.3 118 123-276 135-269 (443)
20 PLN03010 polygalacturonase 96.8 0.029 6.3E-07 55.8 14.1 74 161-257 159-237 (409)
21 PF01696 Adeno_E1B_55K: Adenov 96.8 0.06 1.3E-06 53.2 15.7 115 113-252 57-182 (386)
22 PLN02197 pectinesterase 96.8 0.082 1.8E-06 54.9 17.5 153 65-246 244-443 (588)
23 PLN02480 Probable pectinestera 96.8 0.036 7.8E-07 54.0 14.1 120 112-246 62-216 (343)
24 PF00295 Glyco_hydro_28: Glyco 96.7 0.0075 1.6E-07 57.6 9.0 108 139-276 62-184 (326)
25 PLN02188 polygalacturonase/gly 96.7 0.041 8.9E-07 54.6 13.9 118 123-276 114-247 (404)
26 TIGR03808 RR_plus_rpt_1 twin-a 96.6 0.063 1.4E-06 54.0 14.6 116 112-247 56-177 (455)
27 PF05048 NosD: Periplasmic cop 96.5 0.035 7.5E-07 49.8 11.4 71 160-254 58-128 (236)
28 TIGR03808 RR_plus_rpt_1 twin-a 96.3 0.033 7.2E-07 55.9 10.4 82 143-230 120-207 (455)
29 PF13229 Beta_helix: Right han 96.2 0.019 4.1E-07 46.5 6.9 90 159-276 45-135 (158)
30 PF05048 NosD: Periplasmic cop 95.8 0.25 5.5E-06 44.2 12.9 76 159-258 35-110 (236)
31 COG5434 PGU1 Endopygalactoruna 95.7 0.11 2.4E-06 53.5 11.5 95 160-276 262-367 (542)
32 PLN02176 putative pectinestera 95.0 0.96 2.1E-05 44.1 14.7 121 112-246 53-207 (340)
33 PLN02170 probable pectinestera 94.9 0.36 7.9E-06 49.6 12.2 116 112-246 239-392 (529)
34 PLN02682 pectinesterase family 94.5 0.73 1.6E-05 45.5 12.9 120 112-246 84-247 (369)
35 PLN02416 probable pectinestera 94.5 0.45 9.9E-06 49.0 11.7 116 112-246 244-396 (541)
36 PLN02506 putative pectinestera 94.3 0.53 1.1E-05 48.5 11.7 116 112-246 246-398 (537)
37 PLN02432 putative pectinestera 94.2 0.71 1.5E-05 44.1 11.7 67 112-181 25-107 (293)
38 PLN02497 probable pectinestera 94.1 1.8 3.9E-05 42.2 14.4 154 59-246 12-201 (331)
39 PLN02773 pectinesterase 94.0 0.87 1.9E-05 44.0 12.0 68 112-181 19-115 (317)
40 PLN02301 pectinesterase/pectin 93.9 0.65 1.4E-05 48.0 11.4 116 112-246 250-402 (548)
41 PLN02304 probable pectinestera 93.7 1.4 3.1E-05 43.6 13.0 68 112-181 89-175 (379)
42 PLN02634 probable pectinestera 93.6 1.6 3.5E-05 42.9 13.2 120 112-246 70-233 (359)
43 PF07602 DUF1565: Protein of u 93.6 2.6 5.6E-05 39.4 13.9 120 111-249 16-164 (246)
44 PLN02314 pectinesterase 93.5 0.81 1.8E-05 47.6 11.5 116 112-246 292-444 (586)
45 PLN02995 Probable pectinestera 93.4 1.1 2.5E-05 46.1 12.3 116 112-246 237-391 (539)
46 PLN02201 probable pectinestera 93.2 1.1 2.4E-05 46.0 11.8 116 112-246 220-372 (520)
47 PLN02745 Putative pectinestera 93.0 1.2 2.6E-05 46.5 11.8 116 112-246 299-451 (596)
48 PLN02990 Probable pectinestera 92.9 1.6 3.5E-05 45.4 12.5 116 112-246 273-426 (572)
49 PLN02488 probable pectinestera 92.8 1.4 3.1E-05 45.1 11.8 116 112-246 211-363 (509)
50 PLN02708 Probable pectinestera 92.8 1.4 3.1E-05 45.6 11.9 116 112-246 255-409 (553)
51 PLN03043 Probable pectinestera 92.5 1.9 4.2E-05 44.5 12.4 116 112-246 237-392 (538)
52 PLN02665 pectinesterase family 92.4 1.6 3.5E-05 43.0 11.4 69 112-182 82-168 (366)
53 PLN02916 pectinesterase family 92.4 1.9 4.1E-05 44.2 12.2 67 112-180 201-289 (502)
54 PLN02217 probable pectinestera 92.4 1.4 3E-05 46.6 11.5 116 112-246 264-416 (670)
55 PLN02933 Probable pectinestera 92.3 2.1 4.6E-05 44.1 12.4 116 112-246 232-384 (530)
56 PLN02313 Pectinesterase/pectin 92.1 1.6 3.5E-05 45.5 11.4 116 112-246 289-441 (587)
57 PLN02484 probable pectinestera 92.1 2 4.4E-05 44.8 12.1 116 112-246 286-439 (587)
58 PLN02468 putative pectinestera 91.4 2.4 5.2E-05 44.1 11.8 115 112-246 272-424 (565)
59 COG3420 NosD Nitrous oxidase a 91.4 2.2 4.8E-05 42.0 10.7 43 137-179 45-88 (408)
60 PLN02713 Probable pectinestera 91.3 2.9 6.4E-05 43.4 12.2 116 112-246 264-419 (566)
61 COG5434 PGU1 Endopygalactoruna 91.1 1.1 2.3E-05 46.4 8.7 144 120-275 236-395 (542)
62 COG3420 NosD Nitrous oxidase a 90.5 1.9 4.1E-05 42.4 9.4 93 139-247 100-192 (408)
63 PLN02671 pectinesterase 90.1 8 0.00017 38.1 13.5 102 112-229 73-203 (359)
64 PF01095 Pectinesterase: Pecti 89.7 3.9 8.4E-05 39.0 10.8 114 112-246 14-146 (298)
65 smart00656 Amb_all Amb_all dom 89.4 5 0.00011 35.6 10.6 92 142-247 44-143 (190)
66 PF00544 Pec_lyase_C: Pectate 86.4 6.8 0.00015 35.0 9.6 96 157-275 73-177 (200)
67 PF04431 Pec_lyase_N: Pectate 86.1 0.5 1.1E-05 34.7 1.8 19 23-41 22-40 (56)
68 PRK10531 acyl-CoA thioesterase 86.1 25 0.00054 35.5 14.3 52 165-229 203-255 (422)
69 PF03211 Pectate_lyase: Pectat 78.6 20 0.00044 33.0 9.6 51 200-251 93-144 (215)
70 TIGR03804 para_beta_helix para 77.9 3.5 7.7E-05 27.5 3.5 41 205-247 1-41 (44)
71 PF12708 Pectate_lyase_3: Pect 75.7 4.2 9E-05 35.1 4.2 40 210-250 183-222 (225)
72 COG3866 PelB Pectate lyase [Ca 70.9 16 0.00034 35.7 7.1 78 202-279 115-199 (345)
73 PF08480 Disaggr_assoc: Disagg 64.7 51 0.0011 30.0 8.6 72 210-282 32-112 (198)
74 PF07602 DUF1565: Protein of u 60.2 40 0.00086 31.6 7.5 90 142-253 96-193 (246)
75 PF07822 Toxin_13: Neurotoxin 58.7 1.3 2.7E-05 31.7 -2.0 22 58-79 20-42 (55)
76 PRK10123 wcaM putative colanic 57.2 21 0.00046 34.9 5.2 54 165-229 265-318 (464)
77 TIGR03804 para_beta_helix para 41.2 56 0.0012 21.5 4.0 42 161-224 1-42 (44)
78 PF10880 DUF2673: Protein of u 36.8 28 0.00061 25.8 2.0 24 12-35 10-33 (65)
79 PF12541 DUF3737: Protein of u 30.8 89 0.0019 29.9 4.8 15 164-178 35-49 (277)
80 PF07172 GRP: Glycine rich pro 25.5 41 0.00088 27.0 1.4 33 9-41 6-38 (95)
81 smart00710 PbH1 Parallel beta- 24.3 1E+02 0.0022 16.8 2.7 15 212-226 2-16 (26)
82 PF12541 DUF3737: Protein of u 23.1 3.2E+02 0.007 26.2 7.0 13 166-178 96-108 (277)
83 PTZ00320 ribosomal protein L14 23.1 83 0.0018 28.4 3.0 35 52-87 20-59 (188)
84 PRK03174 sspH acid-soluble spo 22.8 85 0.0019 23.3 2.5 18 203-220 13-31 (59)
85 PF01696 Adeno_E1B_55K: Adenov 22.7 4.3E+02 0.0093 26.6 8.2 98 161-276 138-238 (386)
86 PLN02698 Probable pectinestera 22.0 2E+02 0.0043 29.7 5.9 16 165-180 267-282 (497)
87 PRK09752 adhesin; Provisional 21.6 1E+03 0.022 27.7 11.5 83 143-249 101-193 (1250)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=341.40 Aligned_cols=173 Identities=36% Similarity=0.499 Sum_probs=153.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEEeC------cceEeccCeEEeccCcceEEeC
Q 023251 85 NAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIAG 158 (285)
Q Consensus 85 ~ttGG~gG~v~~VT~~~d~d~~~p~pGtLr~Av~~~~P~~IvF~~~g~I~L~------~~L~v~SnkTI~G~ga~~~I~~ 158 (285)
+||||.||.+++|.+.+| |..+++..+|..+++-..|+|++. .+|.+.|||||.|.|++++|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999988 889999999994444445689886 456789999999999999999
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEe-eCCceEEEeceeeec--------CCCCee
Q 023251 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGLV 229 (285)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI-~gs~nVWIDHcs~s~--------~~Dgli 229 (285)
|+||.|+.+.|||||||+|++...++ ...|+|+| .+++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 67999999999999999999875321 12599999 579999999999999 799999
Q ss_pred eeecCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEcCCCCCCCCC
Q 023251 230 DAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLVQRIPR 285 (285)
Q Consensus 230 Dv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~-~d~~~~VT~h~N~F~~~~~~R~PR 285 (285)
|+++++++||||||+|++|+|+||+|.+|+.. +|+..+|||||||| +|+.||+||
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pr 235 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPR 235 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCc
Confidence 99999999999999999999999999999854 56889999999999 699999998
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.5e-42 Score=308.64 Aligned_cols=155 Identities=41% Similarity=0.611 Sum_probs=126.7
Q ss_pred CCeEEEEccceEEEeCcceEeccCeEEeccCcceEEeCCceEEEe-eeceEEEEeeEEEecccCCCcccccCCCCcCCcc
Q 023251 121 EPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQ-YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 199 (285)
Q Consensus 121 ~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~~G~gi~i~-~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~ 199 (285)
+|++|.+ +|+|+++.+|.|.|||||+|+|++++|. |.|+.+. +++|||||||+|+++. ++..|+..+...
T Consensus 1 ~~~ii~~--~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLIIKV--SGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-EEEEE--HHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcEEEEE--EeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 4665555 6689999999999999999999999999 6789987 9999999999999851 111111122223
Q ss_pred cCCCCcEEeeCCceEEEeceeeecC--------CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEE
Q 023251 200 VSDGDGVSIFGGTHIWVDHCSLSNC--------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIA 271 (285)
Q Consensus 200 ~~dgDaIsI~gs~nVWIDHcs~s~~--------~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h 271 (285)
..++|+|+|++++|||||||+|+|+ .||++|++.+|++||||||+|++|+|+||+|++|+...|..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 4688999999999999999999999 99999999999999999999999999999999998877777999999
Q ss_pred ceEEcCCCCCCCCC
Q 023251 272 FNHFGEGLVQRIPR 285 (285)
Q Consensus 272 ~N~F~~~~~~R~PR 285 (285)
||||. ++.|||||
T Consensus 152 hN~f~-~~~~R~P~ 164 (200)
T PF00544_consen 152 HNYFA-NTNSRNPR 164 (200)
T ss_dssp S-EEE-EEEE-TTE
T ss_pred eEEEC-chhhCCCc
Confidence 99995 99999997
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.3e-38 Score=281.41 Aligned_cols=132 Identities=58% Similarity=0.887 Sum_probs=121.9
Q ss_pred cceEeccCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEE
Q 023251 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWV 216 (285)
Q Consensus 137 ~~L~v~SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWI 216 (285)
.+|.|.|||||+|+|+++.|. |.||+++.++|||||||+|++..+. ++ .++|+|+++++++|||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578899999999999999998 6899999999999999999986542 12 3789999999999999
Q ss_pred eceeeecC---------CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023251 217 DHCSLSNC---------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR 285 (285)
Q Consensus 217 DHcs~s~~---------~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~~~~~~R~PR 285 (285)
|||+|+|. .||++|+++++++||||||+|.+|+|++|+|++|+...+..++||+|||||. ++.+|+||
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~ 150 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPR 150 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCc
Confidence 99999998 8999999999999999999999999999999999887777899999999996 89999998
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.47 E-value=4.8e-06 Score=79.25 Aligned_cols=138 Identities=16% Similarity=0.251 Sum_probs=79.7
Q ss_pred HHHhhcCCCe-EEEEccceEEEeCcceEec-cCeEEeccCcc-eEEeC------CceEEEeeeceEEEEeeEEEecccCC
Q 023251 114 RYAVIQDEPL-WIIFARDMTIRLKEELIMN-SFKTIDGRGAS-VHIAG------GPCITIQYVTNIIIHGLNIHDCKKGG 184 (285)
Q Consensus 114 r~Av~~~~P~-~IvF~~~g~I~L~~~L~v~-SnkTI~G~ga~-~~I~~------G~gi~i~~a~NVIIrnL~i~~~~~~~ 184 (285)
.+|+.+.+|- +|++. .|+-++++.|.|. +++||.|.|.. +.|.+ +-+|.+ .++||-|++++|++... .
T Consensus 2 Q~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~-~ 78 (314)
T TIGR03805 2 QEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG-D 78 (314)
T ss_pred HhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-C
Confidence 4566555554 44443 4577766777775 78888887753 33421 233433 46777777777765321 1
Q ss_pred CcccccCCC------CcCCc----ccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEe
Q 023251 185 NAMVRDSPR------HFGWR----TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLL 254 (285)
Q Consensus 185 ~~~i~~~~~------~~g~r----~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~ 254 (285)
+=+++.+.. ...|. ....++||.+..|+++-|.+|.++...|--|-+ ..|++++|++|.+++-..+..+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI~i 157 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIEI 157 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceEEE
Confidence 001111100 00011 013568899989999999999999887744433 4678888888888754444433
Q ss_pred e
Q 023251 255 G 255 (285)
Q Consensus 255 G 255 (285)
-
T Consensus 158 ~ 158 (314)
T TIGR03805 158 E 158 (314)
T ss_pred E
Confidence 3
No 5
>PLN02218 polygalacturonase ADPG
Probab=98.15 E-value=4.5e-05 Score=75.87 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=74.0
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEE
Q 023251 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 240 (285)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTI 240 (285)
.+.+..++||.|+||+|.. |. ++ ...|||.+.+++||.|.+|.++.. |-.|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~------~s---------pNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PA------DS---------PNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CC------CC---------CCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 3445688899999999874 21 11 267999999999999999999876 667889999999999
Q ss_pred EcceecccCeEEEeecCCCcC-CCCceeEEEEceEEc
Q 023251 241 SNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFG 276 (285)
Q Consensus 241 Snn~f~~h~k~~L~G~sD~~~-~d~~~~VT~h~N~F~ 276 (285)
+||.+.. ...+-+|+--.+. .+..-.|++.++.|.
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~ 314 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLS 314 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEe
Confidence 9999963 3346688754332 334568999999884
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.12 E-value=5.9e-05 Score=74.44 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=75.1
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceE
Q 023251 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (285)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~V 238 (285)
...+.+..++||.|+||+|.. |.. + ...|||.++.++||+|.+|.+...-| .|-++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~--~~~------s---------pNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISA--PSD------S---------PNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeC--CCC------C---------CCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 346667789999999999974 211 1 25799999999999999999988776 77788899999
Q ss_pred EEEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEc
Q 023251 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFG 276 (285)
Q Consensus 239 TISnn~f~~h~k~~L~G~sD~~-~~d~~~~VT~h~N~F~ 276 (285)
+|+|+.+.. ...+-+|+--.+ .....-.|++.++.|.
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~ 277 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT 277 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE
Confidence 999999864 345667873222 1233567888888884
No 7
>PLN02793 Probable polygalacturonase
Probab=98.09 E-value=8.4e-05 Score=74.17 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=73.3
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEE
Q 023251 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (285)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VT 239 (285)
..+.+..++||.|+||+|..- . + ....|||.+..++||+|.+|.+... |-.|-++.++++|+
T Consensus 201 ~~i~~~~~~nv~i~~l~I~~p--~------~---------spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~ 262 (443)
T PLN02793 201 MHIAFTNCRRVTISGLKVIAP--A------T---------SPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIK 262 (443)
T ss_pred eEEEEEccCcEEEEEEEEECC--C------C---------CCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEE
Confidence 345566788999999988752 1 0 1367999999999999999999854 66777888999999
Q ss_pred EEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEcCCC
Q 023251 240 ISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 279 (285)
Q Consensus 240 ISnn~f~~h~k~~L~G~sD~~-~~d~~~~VT~h~N~F~~~~ 279 (285)
|+||.+..- .+.-+|+--.+ .......|++.++.|. +.
T Consensus 263 I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~-~t 301 (443)
T PLN02793 263 IRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLS-NT 301 (443)
T ss_pred EEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEe-CC
Confidence 999998642 34568874222 2233567999999884 44
No 8
>PLN02155 polygalacturonase
Probab=98.03 E-value=0.00011 Score=72.33 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=77.9
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceE
Q 023251 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (285)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~V 238 (285)
-..+.+.+++||.|+||+|.. |.. + ...|||.+..++||+|.+|.+...-| .|-++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~-----------~----~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN-----------S----PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC-----------C----CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 355667799999999999985 221 1 25699999999999999999988766 66788899999
Q ss_pred EEEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEcCCC
Q 023251 239 TISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 279 (285)
Q Consensus 239 TISnn~f~~h~k~~L~G~sD~~-~~d~~~~VT~h~N~F~~~~ 279 (285)
+|++|.+.. ...+-+|+.-.+ .....-+|++.++.|. +.
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~t 269 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-GS 269 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-CC
Confidence 999999975 335678885332 2334568999999994 43
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.02 E-value=0.00013 Score=73.05 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=59.3
Q ss_pred CCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEcCCC
Q 023251 202 DGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGL 279 (285)
Q Consensus 202 dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~-~d~~~~VT~h~N~F~~~~ 279 (285)
..|||.+..++||+|.+|.++.. |-.|.++.++++|+|+|+.+.. ..++-+|+--++. .+..-+|++.++.|. ++
T Consensus 187 NTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~T 262 (456)
T PLN03003 187 NTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-GT 262 (456)
T ss_pred CCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-CC
Confidence 67999999999999999999876 5567789999999999999864 2356688764432 234678999999995 54
No 10
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.92 E-value=9.6e-05 Score=73.32 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=73.9
Q ss_pred hHHHHhhcCCC--eEEEEccceEEEeCcceEe------ccCeEEecc-CcceEEeCCceEEEeeeceEEEEeeEEEeccc
Q 023251 112 TLRYAVIQDEP--LWIIFARDMTIRLKEELIM------NSFKTIDGR-GASVHIAGGPCITIQYVTNIIIHGLNIHDCKK 182 (285)
Q Consensus 112 tLr~Av~~~~P--~~IvF~~~g~I~L~~~L~v------~SnkTI~G~-ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~ 182 (285)
+|..|+.+-.| .+++- +|+-+ ..+|.+ ...+||..+ +..|.|.|..+|+|. ++.++|.+|.|++..+
T Consensus 6 ~lq~Ai~~a~pGD~I~L~--~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLA--DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHH--TT-EEEE---SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHhCCCCCEEEEC--Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 48999875443 44433 34544 234544 356888887 457888877788886 6999999999998643
Q ss_pred CCCcccccCC--C-----Cc--------CCcc-cCCCCcEEe----eCCceEEEeceeeecC-CCC-eeeee-------c
Q 023251 183 GGNAMVRDSP--R-----HF--------GWRT-VSDGDGVSI----FGGTHIWVDHCSLSNC-DDG-LVDAI-------H 233 (285)
Q Consensus 183 ~~~~~i~~~~--~-----~~--------g~r~-~~dgDaIsI----~gs~nVWIDHcs~s~~-~Dg-liDv~-------~ 233 (285)
.....+.... . |. .+.. ..+.+...| .-++|-=||||+|..- ..| ++-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 3222221110 0 00 0000 011112223 1245666799999973 222 22222 1
Q ss_pred CCceEEEEcceec-------ccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCC
Q 023251 234 GSTAITISNNFMT-------HHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQ 281 (285)
Q Consensus 234 gS~~VTISnn~f~-------~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~~~~~~ 281 (285)
-..+-+|.+|||. +...++-+|.|.....+ -+.++.+|+| ++|..
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdG 213 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDG 213 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-S
T ss_pred cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCC
Confidence 2457899999999 46688899988654333 3899999999 57754
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.91 E-value=0.00014 Score=69.40 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=85.0
Q ss_pred cCCCeEEEEccceEEEeCcceEeccCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCc
Q 023251 119 QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (285)
Q Consensus 119 ~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r 198 (285)
...|+.+.|...-.+.++ +.||. .++ ...+.+..++||.|+||+|+.....
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~--nsp-----~w~~~~~~~~nv~i~~i~I~~~~~~--------------- 139 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIR--NSP-----FWHIHINDCDNVTISNITINNPANS--------------- 139 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEE--S-S-----SESEEEESEEEEEEESEEEEEGGGC---------------
T ss_pred ccccceeeeeeecceEEE-------eeEec--CCC-----eeEEEEEccCCeEEcceEEEecCCC---------------
Confidence 356888888653222221 23332 223 4567788999999999999964211
Q ss_pred ccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEc
Q 023251 199 TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFG 276 (285)
Q Consensus 199 ~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~-~d~~~~VT~h~N~F~ 276 (285)
...|||.+.+++||.|++|.+... |-.|-++.++.+|+|+||+|.. ..++-+|+.-... +...-.|+|.++.|.
T Consensus 140 --~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~ 214 (326)
T PF00295_consen 140 --PNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII 214 (326)
T ss_dssp --TS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE
T ss_pred --CCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee
Confidence 367999999999999999999876 5566778888899999999974 3346677643321 122457999998884
No 12
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.72 E-value=0.0017 Score=56.41 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=83.5
Q ss_pred hHHHHh--h-cCCCeEEEEccceEEEeCcceEeccCeEEeccCcce-EEe---CC-------------------------
Q 023251 112 TLRYAV--I-QDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASV-HIA---GG------------------------- 159 (285)
Q Consensus 112 tLr~Av--~-~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~-~I~---~G------------------------- 159 (285)
.|..|+ . ..+..+|.|- .|+-.++++|.+.|+++|.|.|... .+. ..
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 377887 2 3556667765 4688888889999999999987622 221 00
Q ss_pred --------------ceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCC-cEEeeC-CceEEEeceeeec
Q 023251 160 --------------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGD-GVSIFG-GTHIWVDHCSLSN 223 (285)
Q Consensus 160 --------------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgD-aIsI~g-s~nVWIDHcs~s~ 223 (285)
.++.+..++|+.|+|++++++...+ -.+.. ...+... ..... ++.+++ +.++.+..|.+..
T Consensus 99 l~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~-i~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
T PF12708_consen 99 LTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDG-IYFNT-GTDYRII-GSTHVSGIFIDNGSNNVIVNNCIFNG 175 (225)
T ss_dssp EEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-S-EEEEC-CEECEEE-CCEEEEEEEEESCEEEEEEECEEEES
T ss_pred eEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccE-EEEEc-cccCcEe-ecccceeeeeccceeEEEECCccccC
Confidence 1111223567777777776542110 00000 0000000 00001 344443 2344556777777
Q ss_pred CCCCeeeeecCCceEEEEcceecc-cCeEEEeecCCCcCCCCceeEEEEceEEcCCCC
Q 023251 224 CDDGLVDAIHGSTAITISNNFMTH-HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV 280 (285)
Q Consensus 224 ~~DgliDv~~gS~~VTISnn~f~~-h~k~~L~G~sD~~~~d~~~~VT~h~N~F~~~~~ 280 (285)
+.+| +..++++++++||.|.. ......+-... .+++.+|.|. ++.
T Consensus 176 ~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~-~~~ 221 (225)
T PF12708_consen 176 GDNG---IILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIE-NCD 221 (225)
T ss_dssp SSCS---EECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEE-SSS
T ss_pred CCce---eEeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEE-CCc
Confidence 8888 34555899999999997 55555443222 4899999994 765
No 13
>PLN03010 polygalacturonase
Probab=97.64 E-value=0.0015 Score=64.75 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCc-CCCCceeEEEEceEEc
Q 023251 202 DGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFG 276 (285)
Q Consensus 202 dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~-~~d~~~~VT~h~N~F~ 276 (285)
..|||.+..++||+|.+|.+... |-.|-++.++++++|.++.... ....-+|+--+. ..+..-.|++.++.|.
T Consensus 206 NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~ 279 (409)
T PLN03010 206 NTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN 279 (409)
T ss_pred CCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe
Confidence 67999999999999999988876 6677788888888888776652 224556775332 2234568899888885
No 14
>PLN02218 polygalacturonase ADPG
Probab=97.45 E-value=0.0028 Score=63.22 Aligned_cols=120 Identities=19% Similarity=0.333 Sum_probs=83.4
Q ss_pred CCeEEEEccceEEEeCcceEecc--CeEEeccCcceE-----Ee------CC-ceEEEeeeceEEEEeeEEEecccCCCc
Q 023251 121 EPLWIIFARDMTIRLKEELIMNS--FKTIDGRGASVH-----IA------GG-PCITIQYVTNIIIHGLNIHDCKKGGNA 186 (285)
Q Consensus 121 ~P~~IvF~~~g~I~L~~~L~v~S--nkTI~G~ga~~~-----I~------~G-~gi~i~~a~NVIIrnL~i~~~~~~~~~ 186 (285)
...||.|..- +.|.|.. .=||+|+|+.-- .. .. .-|++.+++|+.|++|++++. |
T Consensus 146 ~~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS-p---- 214 (431)
T PLN02218 146 ISKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA-Q---- 214 (431)
T ss_pred cccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-C----
Confidence 3457776531 2455533 378888884210 00 01 136678999999999999974 1
Q ss_pred ccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeec-----CCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcC
Q 023251 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT 261 (285)
Q Consensus 187 ~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~ 261 (285)
.=.|.+..++||.|++.++.. -.||. | ...|++|+|++|.|..-+...-+.+..
T Consensus 215 ----------------~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-d-i~ss~nV~I~n~~I~tGDDcIaIksgs--- 273 (431)
T PLN02218 215 ----------------QIQISIEKCSNVQVSNVVVTAPADSPNTDGI-H-ITNTQNIRVSNSIIGTGDDCISIESGS--- 273 (431)
T ss_pred ----------------CEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-e-ecccceEEEEccEEecCCceEEecCCC---
Confidence 135888999999999999976 34554 4 366899999999999888877776542
Q ss_pred CCCceeEEEEceEEc
Q 023251 262 QDKNMQVTIAFNHFG 276 (285)
Q Consensus 262 ~d~~~~VT~h~N~F~ 276 (285)
.+|++.+++++
T Consensus 274 ----~nI~I~n~~c~ 284 (431)
T PLN02218 274 ----QNVQINDITCG 284 (431)
T ss_pred ----ceEEEEeEEEE
Confidence 26888888775
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.39 E-value=0.0018 Score=61.79 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=76.0
Q ss_pred ccCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecc--------------cCCCcccccCCCCcCCcccCCCCcEE
Q 023251 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK--------------KGGNAMVRDSPRHFGWRTVSDGDGVS 207 (285)
Q Consensus 142 ~SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~--------------~~~~~~i~~~~~~~g~r~~~dgDaIs 207 (285)
.+++||.|..-.- .++.||.+++++|++|+++++.... ......|++..- + ...++||.
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i----~-g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYV----R-GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEE----E-CCCcccEE
Confidence 4666666653210 1245777778888888888876210 000111111100 0 12345899
Q ss_pred eeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023251 208 IFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (285)
Q Consensus 208 I~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~ 276 (285)
+..|+++.|-+|.+.....|+- ...|.++.|.+|.+.+-.-..++-..+....-...++++++|.|.
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~ 201 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF 201 (314)
T ss_pred ECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE
Confidence 9899999999999988877765 345788999999988766666553322211111237888888885
No 16
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.24 E-value=0.002 Score=52.32 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.8
Q ss_pred eEEEeeeceEEEEeeEEEec
Q 023251 161 CITIQYVTNIIIHGLNIHDC 180 (285)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~ 180 (285)
||.+....++.|++.+|++.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~ 21 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN 21 (158)
T ss_dssp CEEETTCEC-EEESEEEESS
T ss_pred EEEEECCcCeEEeeeEEEeC
Confidence 57788888999999999974
No 17
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.24 E-value=0.0059 Score=61.43 Aligned_cols=119 Identities=18% Similarity=0.332 Sum_probs=85.9
Q ss_pred CeEEEEccceEEEeCcceEeccCeEEeccCcceEE---eCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCc
Q 023251 122 PLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHI---AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWR 198 (285)
Q Consensus 122 P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I---~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r 198 (285)
..||.|..- +.|.|.-.=||+|+|..--- ..-.-|++.+++|+.|++|++++..
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp----------------- 160 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP----------------- 160 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------
Confidence 458888652 34556545689999853210 0012467889999999999999741
Q ss_pred ccCCCCcEEeeCCceEEEeceeeecC-----CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEce
Q 023251 199 TVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 273 (285)
Q Consensus 199 ~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N 273 (285)
.=.|.+.++++|.|++.++... .||. | ...|++|+|.+|.+..-+...-+.+..+ +|++.++
T Consensus 161 ----~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-D-i~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~ 227 (456)
T PLN03003 161 ----MAHIHISECNYVTISSLRINAPESSPNTDGI-D-VGASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGI 227 (456)
T ss_pred ----cEEEEEeccccEEEEEEEEeCCCCCCCCCcE-e-ecCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEee
Confidence 1358888999999999999873 5654 4 4679999999999999888887765422 5777777
Q ss_pred EEc
Q 023251 274 HFG 276 (285)
Q Consensus 274 ~F~ 276 (285)
.++
T Consensus 228 ~c~ 230 (456)
T PLN03003 228 DCG 230 (456)
T ss_pred EEE
Confidence 664
No 18
>PLN02155 polygalacturonase
Probab=97.19 E-value=0.0077 Score=59.50 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=84.0
Q ss_pred eEEEEccceEEEeCcceEeccCeEEeccCcceEEe--CC-------ceEEEeeeceEEEEeeEEEecccCCCcccccCCC
Q 023251 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA--GG-------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR 193 (285)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~--~G-------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~ 193 (285)
.||.|..- +.+.+.. =||+|+|..---. .+ ..|.+.+++||.|++|++++. |
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-p----------- 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-Q----------- 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-C-----------
Confidence 47777542 3455544 6899998642110 00 236788999999999999964 1
Q ss_pred CcCCcccCCCCcEEeeCCceEEEeceeeecC-----CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeE
Q 023251 194 HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQV 268 (285)
Q Consensus 194 ~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~V 268 (285)
.=.+.+.+++||.|++.++..- .||. | ...+++|+|++|+|..-+...-+++..+ +|
T Consensus 168 ---------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-d-i~~s~nV~I~~~~I~~gDDcIaik~gs~-------nI 229 (394)
T PLN02155 168 ---------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-H-VQFSTGVTFTGSTVQTGDDCVAIGPGTR-------NF 229 (394)
T ss_pred ---------CeEEEEECeeeEEEEEEEEECCCCCCCCCcc-c-cccceeEEEEeeEEecCCceEEcCCCCc-------eE
Confidence 1358888999999999999763 4653 4 3669999999999999888888876532 67
Q ss_pred EEEceEEc
Q 023251 269 TIAFNHFG 276 (285)
Q Consensus 269 T~h~N~F~ 276 (285)
++.++.++
T Consensus 230 ~I~n~~c~ 237 (394)
T PLN02155 230 LITKLACG 237 (394)
T ss_pred EEEEEEEE
Confidence 88777774
No 19
>PLN02793 Probable polygalacturonase
Probab=96.97 E-value=0.019 Score=57.52 Aligned_cols=118 Identities=17% Similarity=0.294 Sum_probs=82.6
Q ss_pred eEEEEccceEEEeCcceEeccCeEEeccCcceE-----EeC-------CceEEEeeeceEEEEeeEEEecccCCCccccc
Q 023251 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH-----IAG-------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 190 (285)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~-----I~~-------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~ 190 (285)
.||.|... +.|.|.-.=||+|+|..-- ... -.-|.+.+++||.|++|++++..
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp--------- 199 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ--------- 199 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---------
Confidence 47766541 2355544568888885321 000 11367789999999999999741
Q ss_pred CCCCcCCcccCCCCcEEeeCCceEEEeceeeec-----CCCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCc
Q 023251 191 SPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKN 265 (285)
Q Consensus 191 ~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~ 265 (285)
.=.+.+.+++||.|++.++.. -.||. | ...|++|+|++|.+...+....+.+..+
T Consensus 200 ------------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s~nV~I~n~~I~~gDDcIaik~~s~------ 259 (443)
T PLN02793 200 ------------QMHIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISASRGVVIKDSIVRTGDDCISIVGNSS------ 259 (443)
T ss_pred ------------CeEEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eeccceEEEEeCEEeCCCCeEEecCCcC------
Confidence 124778899999999999976 35664 4 4679999999999999988887754322
Q ss_pred eeEEEEceEEc
Q 023251 266 MQVTIAFNHFG 276 (285)
Q Consensus 266 ~~VT~h~N~F~ 276 (285)
+|++.++.++
T Consensus 260 -nI~I~n~~c~ 269 (443)
T PLN02793 260 -RIKIRNIACG 269 (443)
T ss_pred -CEEEEEeEEe
Confidence 6788777774
No 20
>PLN03010 polygalacturonase
Probab=96.83 E-value=0.029 Score=55.76 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeec-----CCCCeeeeecCC
Q 023251 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGS 235 (285)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~-----~~DgliDv~~gS 235 (285)
-|++.+++||.|++|++++. | .=.|.+.++++|.|++..+.. -.||. | ...|
T Consensus 159 ~l~~~~~~nv~v~gitl~ns-p--------------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-D-i~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS-P--------------------KNHISIKTCNYVAISKINILAPETSPNTDGI-D-ISYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC-C--------------------ceEEEEeccccEEEEEEEEeCCCCCCCCCce-e-eecc
Confidence 37788999999999999974 1 124888899999999999876 35654 4 3669
Q ss_pred ceEEEEcceecccCeEEEeecC
Q 023251 236 TAITISNNFMTHHDKVMLLGHS 257 (285)
Q Consensus 236 ~~VTISnn~f~~h~k~~L~G~s 257 (285)
++|+|++|.+..-+...-+.+.
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCC
Confidence 9999999999999988877664
No 21
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.79 E-value=0.06 Score=53.19 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=79.8
Q ss_pred HHHHhhcCCCeEEEEccceEEEeCcceEeccCeEEeccCcceEEeC--CceEEE---------eeeceEEEEeeEEEecc
Q 023251 113 LRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG--GPCITI---------QYVTNIIIHGLNIHDCK 181 (285)
Q Consensus 113 Lr~Av~~~~P~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~I~~--G~gi~i---------~~a~NVIIrnL~i~~~~ 181 (285)
|..|+.+-. -|..+-+-+-.+++++.|.+..+|+|+||-+.|.+ +.+|.+ .+-.+|.+.|++|..-.
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~~ 134 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGRD 134 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecCC
Confidence 777765543 34555555666778999999999999999998843 555654 35689999999998421
Q ss_pred cCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeEE
Q 023251 182 KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVM 252 (285)
Q Consensus 182 ~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~~ 252 (285)
.--|+-+...+++-+.-|+|+...-=.++.. ....|..|+|..-+|++
T Consensus 135 --------------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi 182 (386)
T PF01696_consen 135 --------------------TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGI 182 (386)
T ss_pred --------------------ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEe
Confidence 1356777788999999999998655555432 34455666665555544
No 22
>PLN02197 pectinesterase
Probab=96.79 E-value=0.082 Score=54.88 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=89.9
Q ss_pred Ccccccc--ccccccCcccccCCCCCCCCCc---EEEEcCCCCCCCCCCCch---hHHHHhhc----CCCeEEEEccceE
Q 023251 65 DPNWEKN--RQRLADCAIGFGKNAVGGRDGR---IYVVTDPGDYDVVNPKPG---TLRYAVIQ----DEPLWIIFARDMT 132 (285)
Q Consensus 65 ~~~w~~~--r~~la~~a~GFG~~ttGG~gG~---v~~VT~~~d~d~~~p~pG---tLr~Av~~----~~P~~IvF~~~g~ 132 (285)
.|.|-.. |+-| .+.+.|.++-||.++. .++|.- | +.| |+.+||.. +..++|++=+.|+
T Consensus 244 ~p~w~~~~~r~ll--~~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLM--AKAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhh--ccCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 5889664 5555 3455666776776554 233332 2 444 67788853 3335555545565
Q ss_pred EEeCcceEe---ccCeEEeccCcceE-EeC--------Cce----EE-EeeeceEEEEeeEEEecccCCCcccccCCCCc
Q 023251 133 IRLKEELIM---NSFKTIDGRGASVH-IAG--------GPC----IT-IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHF 195 (285)
Q Consensus 133 I~L~~~L~v---~SnkTI~G~ga~~~-I~~--------G~g----i~-i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~ 195 (285)
..+.+.| ++|+|+.|.|..-+ |.+ |.+ =+ ...+++++.+||+|++....
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~------------ 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGP------------ 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCCC------------
Confidence 3466666 47999999987544 321 211 01 23689999999999985311
Q ss_pred CCcccCCCCcEEee-CCceEEEeceeeecCCC-----------------CeeeeecCCceEEEEcceec
Q 023251 196 GWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMT 246 (285)
Q Consensus 196 g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gS~~VTISnn~f~ 246 (285)
...-|+.+. .+...-+.+|.|....| |.+|.+-|.-..-+++|.|.
T Consensus 380 -----~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 380 -----MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred -----CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 122344443 46777777777776544 44455555555666677664
No 23
>PLN02480 Probable pectinesterase
Probab=96.79 E-value=0.036 Score=53.97 Aligned_cols=120 Identities=19% Similarity=0.319 Sum_probs=76.8
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcc-eEEeC---------CceEEEeeeceEEEEe
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGAS-VHIAG---------GPCITIQYVTNIIIHG 174 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~-~~I~~---------G~gi~i~~a~NVIIrn 174 (285)
|+.+||.+ +..+++++=..|+- ++.|.| ++|+||.|.+.. ..|.+ +.-++ ..+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvt-V~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFT-VEAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEE-EECCCEEEEe
Confidence 78888743 23355554445544 467777 578999998744 33442 12233 3679999999
Q ss_pred eEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCCCe-----------------eeeecCCc
Q 023251 175 LNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGL-----------------VDAIHGST 236 (285)
Q Consensus 175 L~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gS~ 236 (285)
|+|++..+.+. ....++-|+.+. .+.++-+.+|.|.-..|=| +|.+-|.-
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g 206 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRG 206 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEccce
Confidence 99998643210 001234566664 6889999999998766655 56666666
Q ss_pred eEEEEcceec
Q 023251 237 AITISNNFMT 246 (285)
Q Consensus 237 ~VTISnn~f~ 246 (285)
..-+.+|.+.
T Consensus 207 ~a~fe~C~i~ 216 (343)
T PLN02480 207 RSIFHNCEIF 216 (343)
T ss_pred eEEEEccEEE
Confidence 6666777666
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.75 E-value=0.0075 Score=57.61 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=74.6
Q ss_pred eEeccCeEEeccCcceEE-eC---------CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEe
Q 023251 139 LIMNSFKTIDGRGASVHI-AG---------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI 208 (285)
Q Consensus 139 L~v~SnkTI~G~ga~~~I-~~---------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI 208 (285)
+.+.-.=||+|+|..=.- .+ -.-|.+.+++|+.|++|++++. | . =.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-p-------------~-------w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-P-------------F-------WHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES--S-------------S-------ESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCC-C-------------e-------eEEEE
Confidence 344444588888862100 00 1236788999999999999964 1 1 25888
Q ss_pred eCCceEEEeceeeecC-----CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023251 209 FGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (285)
Q Consensus 209 ~gs~nVWIDHcs~s~~-----~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~ 276 (285)
..++||+|++.++... .||. | ..++++|+|.+|.+...+...-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d-~~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-D-IDSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-E-EESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-E-EEeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 9999999999999763 5664 4 3568999999999999888776655432 7888888885
No 25
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.69 E-value=0.041 Score=54.56 Aligned_cols=118 Identities=23% Similarity=0.341 Sum_probs=83.9
Q ss_pred eEEEEccceEEEeCcceEeccCeEEeccCcceE------Ee-C----CceEEEeeeceEEEEeeEEEecccCCCcccccC
Q 023251 123 LWIIFARDMTIRLKEELIMNSFKTIDGRGASVH------IA-G----GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS 191 (285)
Q Consensus 123 ~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~~------I~-~----G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~ 191 (285)
.||.|.. -+.|.|...=||+|+|..-- .. + -.-|.+..++||.|++|++++. |
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS-p--------- 177 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS-K--------- 177 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-C---------
Confidence 4777642 13466666778888886310 00 0 1235678999999999999974 1
Q ss_pred CCCcCCcccCCCCcEEeeCCceEEEeceeeecC-----CCCeeeeecCCceEEEEcceecccCeEEEeecCCCcCCCCce
Q 023251 192 PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNM 266 (285)
Q Consensus 192 ~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-----~DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~ 266 (285)
.=.|.+..++||.|++.++... .||. | ...|++|+|.+|.|..-+...-+++..+
T Consensus 178 -----------~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~~------- 237 (404)
T PLN02188 178 -----------FFHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGNS------- 237 (404)
T ss_pred -----------CeEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCCc-------
Confidence 1358888999999999999863 5654 4 4679999999999999988888855422
Q ss_pred eEEEEceEEc
Q 023251 267 QVTIAFNHFG 276 (285)
Q Consensus 267 ~VT~h~N~F~ 276 (285)
+|++.++.+.
T Consensus 238 nI~I~n~~c~ 247 (404)
T PLN02188 238 QVTITRIRCG 247 (404)
T ss_pred cEEEEEEEEc
Confidence 5777777664
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.61 E-value=0.063 Score=53.99 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=77.5
Q ss_pred hHHHHhhcCC-C-eEEEEccceEEEeCcceEeccCeEEeccCcce--EEeCCceEE-EeeeceEEEEeeEEEecccCCCc
Q 023251 112 TLRYAVIQDE-P-LWIIFARDMTIRLKEELIMNSFKTIDGRGASV--HIAGGPCIT-IQYVTNIIIHGLNIHDCKKGGNA 186 (285)
Q Consensus 112 tLr~Av~~~~-P-~~IvF~~~g~I~L~~~L~v~SnkTI~G~ga~~--~I~~G~gi~-i~~a~NVIIrnL~i~~~~~~~~~ 186 (285)
.|+.|+.+-. | -.|++... +- +..+|.+.++.||.|..... .|.++.++. -..++||-|++++|++. +
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G--- 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--G--- 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--C---
Confidence 4788875422 2 34555542 22 23678899999999995443 365554444 35899999999999863 1
Q ss_pred ccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCC-CCeeeeecCCceEEEEcceecc
Q 023251 187 MVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCD-DGLVDAIHGSTAITISNNFMTH 247 (285)
Q Consensus 187 ~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~-DgliDv~~gS~~VTISnn~f~~ 247 (285)
.+.....-+|.+.+++++-|.+|+|.... -|.. .+++. ..|++|.+..
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~g 177 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTITQ 177 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEec
Confidence 01112345889989999999999999884 7765 34455 6777776664
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.55 E-value=0.035 Score=49.78 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=37.5
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEE
Q 023251 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 239 (285)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VT 239 (285)
.||.+..++++.|++-.|++.. .||.+..+.+..|..+.|+....|.. ..++...+
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~----------------------~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~ 113 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNG----------------------YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNT 113 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccC----------------------CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceE
Confidence 4677777777777777777542 44555444444555555555444332 23344445
Q ss_pred EEcceecccCeEEEe
Q 023251 240 ISNNFMTHHDKVMLL 254 (285)
Q Consensus 240 ISnn~f~~h~k~~L~ 254 (285)
|++|.|.+...++.+
T Consensus 114 I~~N~i~~~~~GI~l 128 (236)
T PF05048_consen 114 ISNNTISNNGYGIYL 128 (236)
T ss_pred EECcEEeCCCEEEEE
Confidence 555555444443333
No 28
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.27 E-value=0.033 Score=55.93 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=45.9
Q ss_pred cCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecc------cCCCcccccCCCCcCCcccCCCCcEEeeCCceEEE
Q 023251 143 SFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK------KGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWV 216 (285)
Q Consensus 143 SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~------~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWI 216 (285)
+.+||+|.|.+-.=. -.+|.+++++++.|++.+|++.. .+..+.|.+.. -.+ ....+|.++.++++.|
T Consensus 120 sGLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V 193 (455)
T TIGR03808 120 SGLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIV 193 (455)
T ss_pred EeeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEE
Confidence 344777777543222 34788889999999999998751 01111111110 000 1223466666667777
Q ss_pred eceeeecCCCCeee
Q 023251 217 DHCSLSNCDDGLVD 230 (285)
Q Consensus 217 DHcs~s~~~DgliD 230 (285)
.+++++.+.|+.|-
T Consensus 194 ~~N~I~g~RD~gi~ 207 (455)
T TIGR03808 194 ARNTIIGANDNGIE 207 (455)
T ss_pred ECCEEEccCCCCeE
Confidence 77777776665443
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.18 E-value=0.019 Score=46.55 Aligned_cols=90 Identities=23% Similarity=0.281 Sum_probs=51.7
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceE
Q 023251 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (285)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~V 238 (285)
+.||.+....++.|++..|++.. .++.+.++..+.|.+|.+..+.+.-|.+...+..+
T Consensus 45 ~~gi~~~~~~~~~i~~~~~~~~~----------------------~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~ 102 (158)
T PF13229_consen 45 GYGIYVSGGSNVTISNNTISDNG----------------------SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNV 102 (158)
T ss_dssp TTSEEEECCES-EEES-EEES-S----------------------EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-
T ss_pred CcEEEEecCCCeEEECeEEEEcc----------------------ceEEEEecCCceecCcEEEcCCCccEEEeccCCCE
Confidence 45677777788888888887531 46777778888888888888877444443225678
Q ss_pred EEEcceecccC-eEEEeecCCCcCCCCceeEEEEceEEc
Q 023251 239 TISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (285)
Q Consensus 239 TISnn~f~~h~-k~~L~G~sD~~~~d~~~~VT~h~N~F~ 276 (285)
+|.+|.|.+.. ..+.+.... ...+++.+|.|.
T Consensus 103 ~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~ 135 (158)
T PF13229_consen 103 TIENNTIHNNGGSGIYLEGGS------SPNVTIENNTIS 135 (158)
T ss_dssp EEES-EEECCTTSSCEEEECC--------S-EEECEEEE
T ss_pred EEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEE
Confidence 88888888765 344333332 236777777774
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.76 E-value=0.25 Score=44.18 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=61.3
Q ss_pred CceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceE
Q 023251 159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 238 (285)
Q Consensus 159 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~V 238 (285)
..|+.+..+.++.|++.+|++. ..||.+..++++-|..|.++.+..|.. ...+...
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~ 90 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNN 90 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCc
Confidence 4567788999999999998853 468999999999999999999998866 3556656
Q ss_pred EEEcceecccCeEEEeecCC
Q 023251 239 TISNNFMTHHDKVMLLGHSD 258 (285)
Q Consensus 239 TISnn~f~~h~k~~L~G~sD 258 (285)
+|++|.|.+.....++-.+.
T Consensus 91 ~I~~N~i~~n~~GI~l~~s~ 110 (236)
T PF05048_consen 91 TISNNTISNNGYGIYLYGSS 110 (236)
T ss_pred EEECCEecCCCceEEEeeCC
Confidence 99999999877666665554
No 31
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.73 E-value=0.11 Score=53.50 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=62.8
Q ss_pred ceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeee-------
Q 023251 160 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAI------- 232 (285)
Q Consensus 160 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~------- 232 (285)
.++..+.++|+.|+||+|..-.+ ..-|||-+.+++||-|+-|.|+...| .|-++
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCcc
Confidence 35566788999999999884211 15688888889999999999988433 33222
Q ss_pred ----cCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023251 233 ----HGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (285)
Q Consensus 233 ----~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~ 276 (285)
.-+.+|+|++|+|..-.-+..+|+.-. -+...|++-.|.|-
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~---ggv~ni~ved~~~~ 367 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG---GGVQNITVEDCVMD 367 (542)
T ss_pred cccccccccEEEecceecccccceEeeeecC---CceeEEEEEeeeec
Confidence 124578999999985545555554321 12345777777773
No 32
>PLN02176 putative pectinesterase
Probab=94.95 E-value=0.96 Score=44.15 Aligned_cols=121 Identities=19% Similarity=0.283 Sum_probs=73.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-Ee--CCc------eEEEeeeceEEEEee
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IA--GGP------CITIQYVTNIIIHGL 175 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~--~G~------gi~i~~a~NVIIrnL 175 (285)
|+.+||.. +..+++++-+.|+- .+.|.| ++|+||.|.|...+ |. ++. .++ ..+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~-v~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFT-SYASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEE-EECCCEEEEee
Confidence 67777742 33345555555654 366777 57999999987544 32 111 222 37899999999
Q ss_pred EEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCC-----------------CeeeeecCCce
Q 023251 176 NIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTA 237 (285)
Q Consensus 176 ~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gS~~ 237 (285)
+|++..+..+ .+ + ...+-|+-+. .+..+-+.+|.|....| |.+|.+-|.-.
T Consensus 130 T~~Nt~~~~~-----~~---~---~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~ 198 (340)
T PLN02176 130 TFKNTYNIAS-----NS---S---RPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQ 198 (340)
T ss_pred EEEeCCCccC-----CC---C---CCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEEecEEEecccEEecCce
Confidence 9998643100 00 0 1123444443 36778888888876544 55555556666
Q ss_pred EEEEcceec
Q 023251 238 ITISNNFMT 246 (285)
Q Consensus 238 VTISnn~f~ 246 (285)
.-+.+|.|.
T Consensus 199 a~Fe~C~I~ 207 (340)
T PLN02176 199 SIFEGCTLK 207 (340)
T ss_pred EEEeccEEE
Confidence 667777775
No 33
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.89 E-value=0.36 Score=49.60 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=67.9
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-----EEEeeeceEE
Q 023251 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNII 171 (285)
Q Consensus 112 tLr~Av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVI 171 (285)
|+.+||.. +..+++++=+.|+ ..+.+.| ++|+||.|.|...+ |.+ |.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 67778852 2235555555566 3466666 58999999987644 432 211 1124789999
Q ss_pred EEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeec
Q 023251 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (285)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (285)
.+||+|++-... ..+-|+.+. .+..+-+.+|.|.... .|.+|.+-
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIF 379 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIF 379 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceec
Confidence 999999985311 012233332 3566666667666543 34455555
Q ss_pred CCceEEEEcceec
Q 023251 234 GSTAITISNNFMT 246 (285)
Q Consensus 234 gS~~VTISnn~f~ 246 (285)
|.-..-+++|.|.
T Consensus 380 G~a~avFq~C~I~ 392 (529)
T PLN02170 380 GNSAVVFQSCNIA 392 (529)
T ss_pred ccceEEEeccEEE
Confidence 5555666666654
No 34
>PLN02682 pectinesterase family protein
Probab=94.54 E-value=0.73 Score=45.46 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=71.2
Q ss_pred hHHHHhhc----C-CCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC----------Cc--e-----EEEe
Q 023251 112 TLRYAVIQ----D-EPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----------GP--C-----ITIQ 165 (285)
Q Consensus 112 tLr~Av~~----~-~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~----------G~--g-----i~i~ 165 (285)
|+.+||.. + +|.+|.+ +.|+ ..+.|.| ++|+||.|.|..-+ |.. |. | -...
T Consensus 84 TIQ~AIdavP~~~~~r~vI~I-k~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKV-NAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEE-eCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE
Confidence 67777742 2 3444444 4454 3566777 68999999986543 421 10 1 1123
Q ss_pred eeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCC-----------------C
Q 023251 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------G 227 (285)
Q Consensus 166 ~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------g 227 (285)
.+++++.+||+|++..+.. .+ | ..+.-|+.+. .+.++-+.+|.|....| |
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG 228 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEG 228 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcc
Confidence 6889999999999864311 00 1 1122344443 46788888888877544 5
Q ss_pred eeeeecCCceEEEEcceec
Q 023251 228 LVDAIHGSTAITISNNFMT 246 (285)
Q Consensus 228 liDv~~gS~~VTISnn~f~ 246 (285)
.+|.+-|.-..-+.+|.|.
T Consensus 229 ~VDFIFG~g~a~Fe~C~I~ 247 (369)
T PLN02682 229 SVDFIFGNGLSLYEGCHLH 247 (369)
T ss_pred cccEEecCceEEEEccEEE
Confidence 5566666666666777665
No 35
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.46 E-value=0.45 Score=49.03 Aligned_cols=116 Identities=18% Similarity=0.283 Sum_probs=70.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce----EE-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g----i~-i~~a~NVII 172 (285)
|+.+||.. +..++|++=+.|+- .+.+.| .+|+||.|.|...+ |.+ |.+ =+ ...+++++.
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 321 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAVSGEGFLA 321 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEEECCCeEE
Confidence 67777742 34456665556653 466766 57999999987543 442 211 01 236899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++-... ..+-|+-+. .+.++-+-+|.|.... .|.+|.+-|
T Consensus 322 ~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 384 (541)
T PLN02416 322 RDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFG 384 (541)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeec
Confidence 99999985321 112333332 3566667777766543 455566666
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 385 ~a~avfq~c~i~ 396 (541)
T PLN02416 385 NAAVVFQACNIV 396 (541)
T ss_pred cceEEEeccEEE
Confidence 666677777775
No 36
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.25 E-value=0.53 Score=48.52 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=68.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-----EEEeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-----i~i~~a~NVII 172 (285)
|+.+||.. +..+++||=+.|+- .+.+.| ++|+||.|.|...+ |.+ |.+ -....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 57777742 23345555455543 455666 58999999986544 332 111 01247899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++-... ..+-|+-+. .+.++-+.+|.|.... .|.+|.+-|
T Consensus 324 ~nit~~Ntag~-----------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG 386 (537)
T PLN02506 324 RDITFRNTAGP-----------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFG 386 (537)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEcc
Confidence 99999985311 112233332 3566777777766543 455566666
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+.+|.|.
T Consensus 387 ~a~avfq~C~i~ 398 (537)
T PLN02506 387 NGAAVLQNCKIY 398 (537)
T ss_pred CceeEEeccEEE
Confidence 666666777665
No 37
>PLN02432 putative pectinesterase
Probab=94.22 E-value=0.71 Score=44.14 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=41.7
Q ss_pred hHHHHhhc----C-CCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC--CceE----E-EeeeceEEEEee
Q 023251 112 TLRYAVIQ----D-EPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG--GPCI----T-IQYVTNIIIHGL 175 (285)
Q Consensus 112 tLr~Av~~----~-~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~--G~gi----~-i~~a~NVIIrnL 175 (285)
|+.+||.. + +|.+|.++ .|+ ..+.|.| ++|+||.|.+...+ |.. +.+. + ...++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~-~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVK-PGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVLASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEe-Cce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEECCCeEEEee
Confidence 56777742 2 34444444 454 3566766 68999999986543 321 1111 1 237799999999
Q ss_pred EEEecc
Q 023251 176 NIHDCK 181 (285)
Q Consensus 176 ~i~~~~ 181 (285)
+|++..
T Consensus 102 t~~Nt~ 107 (293)
T PLN02432 102 TIQNTF 107 (293)
T ss_pred EEEeCC
Confidence 999853
No 38
>PLN02497 probable pectinesterase
Probab=94.11 E-value=1.8 Score=42.17 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=86.7
Q ss_pred cceeccCccccccccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCch---hHHHHhhc----CCCeEEEEccce
Q 023251 59 DDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPG---TLRYAVIQ----DEPLWIIFARDM 131 (285)
Q Consensus 59 d~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~v~~VT~~~d~d~~~p~pG---tLr~Av~~----~~P~~IvF~~~g 131 (285)
--|+-|.|.|.......+- .+.++|.. | +.| |+.+||.. +..+++++=+.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~--------------~~~i~Va~--d------GsGdf~TIq~AIdavP~~~~~~~~I~Ik~G 69 (331)
T PLN02497 12 ALCCFCLPHLIEAKPFGVY--------------QQQVFVDQ--S------GHGNFTTIQSAIDSVPSNNKHWFCINVKAG 69 (331)
T ss_pred HHHHhhcchhhhcCCcccc--------------ceEEEECC--C------CCCCccCHHHHHhhccccCCceEEEEEeCc
Confidence 3477799999866554321 22333432 1 222 57777742 223444443445
Q ss_pred EEEeCcceEe---ccCeEEeccCcceE-EeC--Cce-----EEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCccc
Q 023251 132 TIRLKEELIM---NSFKTIDGRGASVH-IAG--GPC-----ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTV 200 (285)
Q Consensus 132 ~I~L~~~L~v---~SnkTI~G~ga~~~-I~~--G~g-----i~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~ 200 (285)
+ .++.|.| ++++||.|.|...+ |.. +.+ -....++|++.+||+|++..+... .+- ..
T Consensus 70 ~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nlT~~Nt~~~~~---------~~~-~~ 137 (331)
T PLN02497 70 L--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSITFANSYNFPS---------KGN-KN 137 (331)
T ss_pred E--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEccEEEeCCCCcc---------ccC-CC
Confidence 4 3566766 58999999986533 321 111 112478999999999998642100 000 00
Q ss_pred CCCCcEEee-CCceEEEeceeeecCCCCe-----------------eeeecCCceEEEEcceec
Q 023251 201 SDGDGVSIF-GGTHIWVDHCSLSNCDDGL-----------------VDAIHGSTAITISNNFMT 246 (285)
Q Consensus 201 ~dgDaIsI~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~gS~~VTISnn~f~ 246 (285)
..+-|+.+. .+.++-+.+|.|....|=| +|.+-|.-..-+.+|.|.
T Consensus 138 ~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe~C~I~ 201 (331)
T PLN02497 138 PRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYESCVIQ 201 (331)
T ss_pred CCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEEEeCEEEecccEEccCceEEEEccEEE
Confidence 122355543 4688888999988765544 455555555666666665
No 39
>PLN02773 pectinesterase
Probab=94.00 E-value=0.87 Score=44.00 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=41.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC----------------Cce-----E
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----------------GPC-----I 162 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~----------------G~g-----i 162 (285)
|+.+||.. +..++++|=+.|+ ..+.|.| ++|+||.|.+...+ |.. |.+ -
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 57777742 2224444444454 3466777 46899999876433 331 111 1
Q ss_pred EEeeeceEEEEeeEEEecc
Q 023251 163 TIQYVTNIIIHGLNIHDCK 181 (285)
Q Consensus 163 ~i~~a~NVIIrnL~i~~~~ 181 (285)
....++|++.+||+|++..
T Consensus 97 v~v~a~~f~a~nlT~~Nt~ 115 (317)
T PLN02773 97 VIVEGEDFIAENITFENSA 115 (317)
T ss_pred EEEECCCeEEEeeEEEeCC
Confidence 1236899999999999864
No 40
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.85 E-value=0.65 Score=47.98 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=69.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-E---E-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVII 172 (285)
|+.+||.. +..++++|=+.|+ .++.+.| ++|+||.|.|...+ |.+ |.+ + + ...+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 67777743 3335555555566 4566777 47999999987554 332 211 0 1 236799999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||.|++.... ...-|+-+. .+..+-+.+|.|.... .|.+|.+-|
T Consensus 328 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 328 QDIWFQNTAGP-----------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecc
Confidence 99999985311 112333332 3566667777766543 455566666
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 391 ~a~avfq~c~i~ 402 (548)
T PLN02301 391 NAAVVFQNCKIV 402 (548)
T ss_pred cceeEEeccEEE
Confidence 666666666665
No 41
>PLN02304 probable pectinesterase
Probab=93.67 E-value=1.4 Score=43.62 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=43.4
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeCC--c----e-----EEEeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGG--P----C-----ITIQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~G--~----g-----i~i~~a~NVII 172 (285)
|+.+||.. +..+++|+=+.|+ ..+.|.| ++|+||.|.|...+ |... . + -....++|++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 67778742 2334444444554 3477777 68999999987643 3211 0 1 11236899999
Q ss_pred EeeEEEecc
Q 023251 173 HGLNIHDCK 181 (285)
Q Consensus 173 rnL~i~~~~ 181 (285)
+||+|++..
T Consensus 167 ~nITf~Nta 175 (379)
T PLN02304 167 KNISFMNVA 175 (379)
T ss_pred EeeEEEecC
Confidence 999999864
No 42
>PLN02634 probable pectinesterase
Probab=93.59 E-value=1.6 Score=42.91 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=70.9
Q ss_pred hHHHHhhc----C-CCeEEEEccceEEEeCcceEe---ccCeEEeccCcceEE-eC----------CceE-------EEe
Q 023251 112 TLRYAVIQ----D-EPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVHI-AG----------GPCI-------TIQ 165 (285)
Q Consensus 112 tLr~Av~~----~-~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~I-~~----------G~gi-------~i~ 165 (285)
|+.+||.. + ++.+|.+ +.|+ ..+.|.| ++|+||.|.|...+| .. |..+ ...
T Consensus 70 TIQaAIda~P~~~~~r~vI~I-k~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKI-NAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEE-eCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE
Confidence 56667642 2 3444444 4455 4466766 589999999876553 21 1011 123
Q ss_pred eeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCC-----------------C
Q 023251 166 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------G 227 (285)
Q Consensus 166 ~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------g 227 (285)
.+++++.+||+|++..+.. . .| ...+-|+.+. .+.++-+.+|.|....| |
T Consensus 147 ~a~~F~a~niTf~Nta~~~------~---~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~yf~~CyIeG 214 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP------M---PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFKECYIEG 214 (359)
T ss_pred ECCCeEEEeCeEEeCCccC------C---CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCEEEEeeEEcc
Confidence 6799999999999864321 0 01 1223444443 36778888888876544 5
Q ss_pred eeeeecCCceEEEEcceec
Q 023251 228 LVDAIHGSTAITISNNFMT 246 (285)
Q Consensus 228 liDv~~gS~~VTISnn~f~ 246 (285)
.+|.+-|.-..-+.+|.|.
T Consensus 215 ~VDFIFG~g~a~Fe~C~I~ 233 (359)
T PLN02634 215 SIDFIFGNGRSMYKDCELH 233 (359)
T ss_pred cccEEcCCceEEEeccEEE
Confidence 5566666656667777776
No 43
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.56 E-value=2.6 Score=39.43 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=70.8
Q ss_pred hhHHHHhhcCCCeEEEEccceEEEeC----cceEeccCeEEeccCcc-----eEEeC--------Cce-------EEEee
Q 023251 111 GTLRYAVIQDEPLWIIFARDMTIRLK----EELIMNSFKTIDGRGAS-----VHIAG--------GPC-------ITIQY 166 (285)
Q Consensus 111 GtLr~Av~~~~P~~IvF~~~g~I~L~----~~L~v~SnkTI~G~ga~-----~~I~~--------G~g-------i~i~~ 166 (285)
-|+.+|+.+..|--.|.=..|+-+-. -+|.+.+.+||.|.... +.+.+ |.+ ++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 37888887655443333234554432 24778888888885331 22211 111 44556
Q ss_pred eceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecC-CCCeeeee----cCCceEEEE
Q 023251 167 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-DDGLVDAI----HGSTAITIS 241 (285)
Q Consensus 167 a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~-~DgliDv~----~gS~~VTIS 241 (285)
+++..|++++|++..+ ..+-||.|+++ +.-|..|+|+.+ .+|..... .....++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888988886422 24567888766 777888888886 55543211 233456677
Q ss_pred cceecccC
Q 023251 242 NNFMTHHD 249 (285)
Q Consensus 242 nn~f~~h~ 249 (285)
.|.+.+..
T Consensus 157 GN~~~~~~ 164 (246)
T PF07602_consen 157 GNSIYFNK 164 (246)
T ss_pred cceEEecC
Confidence 77666433
No 44
>PLN02314 pectinesterase
Probab=93.51 E-value=0.81 Score=47.64 Aligned_cols=116 Identities=20% Similarity=0.313 Sum_probs=69.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-E----EEeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I----TIQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-i----~i~~a~NVII 172 (285)
|+.+||.. +..++|++=+.|+- .+.+.| ..|+|+.|.|..-+ |.+ |.. + ....+++++.
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~~~F~a 369 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAGKGFIA 369 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEcCCeEE
Confidence 67778743 33355555555663 466666 47899999986544 332 111 0 1237899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++.... ...-|+.+. ++...-+.+|.|.... .|.+|.+-|
T Consensus 370 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG 432 (586)
T PLN02314 370 KDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFG 432 (586)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceecc
Confidence 99999985321 122344443 4566677777776543 345566666
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 433 ~a~avf~~c~i~ 444 (586)
T PLN02314 433 NAAVVFQNCNIQ 444 (586)
T ss_pred CceeeeeccEEE
Confidence 666667777665
No 45
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.37 E-value=1.1 Score=46.11 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=70.6
Q ss_pred hHHHHhhc------CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeCCc----eE-E------EeeeceE
Q 023251 112 TLRYAVIQ------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGP----CI-T------IQYVTNI 170 (285)
Q Consensus 112 tLr~Av~~------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~G~----gi-~------i~~a~NV 170 (285)
|..+||.. +..+++|+=+.|+ .++.+.| ++|+|+.|.|...+ |.++. +. + ...++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 67777742 1224444444455 3456666 57999999987543 54211 11 1 2368999
Q ss_pred EEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCC-----------------Ceeeee
Q 023251 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAI 232 (285)
Q Consensus 171 IIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~D-----------------gliDv~ 232 (285)
+.+||+|++.... ..+-|+-+. .+...-+.+|.|.-..| |.+|.+
T Consensus 315 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 377 (539)
T PLN02995 315 IAKGITFRNTAGP-----------------AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFI 377 (539)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccceE
Confidence 9999999985311 123455554 46788888888877544 455655
Q ss_pred cCCceEEEEcceec
Q 023251 233 HGSTAITISNNFMT 246 (285)
Q Consensus 233 ~gS~~VTISnn~f~ 246 (285)
-|.-..-+.+|.|.
T Consensus 378 FG~a~avf~~C~i~ 391 (539)
T PLN02995 378 FGNAAAVFQNCIIL 391 (539)
T ss_pred ecccceEEeccEEE
Confidence 56556666666665
No 46
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=93.16 E-value=1.1 Score=46.01 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=65.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------CceE----E-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~gi----~-i~~a~NVII 172 (285)
|+.+||.. +..+++++=+.|+- ++.+.| ++|+||.|.|...+ |.+ |.+- + ...+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67777742 22234444444543 466766 47899999986543 432 2110 1 236899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++..+. ..+-|+.+. .+...-+.+|.|.... .|.+|.+-|
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 360 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFG 360 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEec
Confidence 99999986321 112333333 3456666666665533 344555555
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-..-+.+|.|.
T Consensus 361 ~a~avf~~C~i~ 372 (520)
T PLN02201 361 DATAVFQNCQIL 372 (520)
T ss_pred CceEEEEccEEE
Confidence 555666666665
No 47
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.97 E-value=1.2 Score=46.48 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=66.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeCCc----eE-E------EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGP----CI-T------IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~G~----gi-~------i~~a~NVII 172 (285)
|+.+||.. +..+++++=+.|+- .+.+.| ++|+||.|.|...+ |.+.. |+ + ...+++++.
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v~~~~F~a 376 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVALGEGFMA 376 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEEEcCCEEE
Confidence 67778743 22345554445543 366766 46999999987554 43211 11 1 137899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++.... ..+-|+-+. .+...-+.+|.|.... .|.+|.+-|
T Consensus 377 ~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 439 (596)
T PLN02745 377 KSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFG 439 (596)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEec
Confidence 99999985321 112233332 3566666666665533 344555555
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-..-+.+|.|.
T Consensus 440 ~a~avf~~C~i~ 451 (596)
T PLN02745 440 DAAAIFQNCLIF 451 (596)
T ss_pred ceeEEEEecEEE
Confidence 555556666554
No 48
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=92.89 E-value=1.6 Score=45.39 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=68.3
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeCCc----e-E-E------EeeeceEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGP----C-I-T------IQYVTNII 171 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~G~----g-i-~------i~~a~NVI 171 (285)
|+.+||.. +..+++++=+.|+- .+.+.| .+|+||.|.|..-+ |.+.. | + + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 67778743 22344444445543 466766 47999999986543 43210 1 1 1 13689999
Q ss_pred EEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeec
Q 023251 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (285)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (285)
.+||+|++-... ..+-|+-+. .+...-+.+|.|.... .|.+|.+-
T Consensus 351 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 413 (572)
T PLN02990 351 AKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIF 413 (572)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEc
Confidence 999999985321 122344443 3566666667665532 45556656
Q ss_pred CCceEEEEcceec
Q 023251 234 GSTAITISNNFMT 246 (285)
Q Consensus 234 gS~~VTISnn~f~ 246 (285)
|.-..-+++|.|.
T Consensus 414 G~a~avf~~C~i~ 426 (572)
T PLN02990 414 GDAKVVLQNCNIV 426 (572)
T ss_pred cCceEEEEccEEE
Confidence 6666666777665
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.79 E-value=1.4 Score=45.11 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=70.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeCCc----eE-E------EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAGGP----CI-T------IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~G~----gi-~------i~~a~NVII 172 (285)
|+.+||.. +..+++++=+.|+ .++.|.| ++|+||.|.|...+ |.++. |. + ...+++++.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67777742 2224444444454 3466777 57999999987644 43211 11 1 136789999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++.... ..+-|+.+. .+...-+.+|.|.... .|.+|.+-|
T Consensus 289 ~nitf~Ntag~-----------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG 351 (509)
T PLN02488 289 IDMCFRNTAGP-----------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICG 351 (509)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEec
Confidence 99999985311 123445443 4677777777776543 455566666
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 352 ~a~avFq~C~I~ 363 (509)
T PLN02488 352 NAAAVFQFCQIV 363 (509)
T ss_pred ceEEEEEccEEE
Confidence 666777777775
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=92.76 E-value=1.4 Score=45.59 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=72.8
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC----C-ceE-E------EeeeceE
Q 023251 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG----G-PCI-T------IQYVTNI 170 (285)
Q Consensus 112 tLr~Av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~----G-~gi-~------i~~a~NV 170 (285)
|+.+||.. .+.+.|||=+.|+- ++.+.| +.|+||.|.|..-+ |.+ + .|+ + ...++++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~~~f 332 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGF 332 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEcCCe
Confidence 67777742 12344555455653 466665 57999999986544 432 1 221 1 1378999
Q ss_pred EEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeee
Q 023251 171 IIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAI 232 (285)
Q Consensus 171 IIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~ 232 (285)
+.+||+|++-... ..+-|+.+. .+..+-+.+|.|.... .|.+|.+
T Consensus 333 ~a~~it~~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFI 395 (553)
T PLN02708 333 MARDLTIQNTAGP-----------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFI 395 (553)
T ss_pred EEEeeEEEcCCCC-----------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEE
Confidence 9999999985210 123445544 4677888888877643 5666777
Q ss_pred cCCceEEEEcceec
Q 023251 233 HGSTAITISNNFMT 246 (285)
Q Consensus 233 ~gS~~VTISnn~f~ 246 (285)
-|.-.+-+++|.|.
T Consensus 396 FG~a~avfq~c~i~ 409 (553)
T PLN02708 396 FGNSAAVFQDCAIL 409 (553)
T ss_pred ecCceEEEEccEEE
Confidence 77777778888776
No 51
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=92.49 E-value=1.9 Score=44.49 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=70.1
Q ss_pred hHHHHhhc---CC----CeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-----EEEeeece
Q 023251 112 TLRYAVIQ---DE----PLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (285)
Q Consensus 112 tLr~Av~~---~~----P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-----i~i~~a~N 169 (285)
|+.+||.. .. -+++|+=+.|+- .+.|.| +.|+||.|.|..-+ |.+ |.+ .....+++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v~~~~ 314 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAVSGER 314 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEEECCC
Confidence 67777742 11 145555555664 466666 58999999986544 432 211 11236799
Q ss_pred EEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeee
Q 023251 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDA 231 (285)
Q Consensus 170 VIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv 231 (285)
+|.+||+|++.... ...-|+-+. .+...-+.+|+|.... .|.+|.
T Consensus 315 F~a~~it~~Ntag~-----------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDF 377 (538)
T PLN03043 315 FVAVDVTFRNTAGP-----------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDF 377 (538)
T ss_pred EEEEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccce
Confidence 99999999985311 122344443 3566677777776543 455566
Q ss_pred ecCCceEEEEcceec
Q 023251 232 IHGSTAITISNNFMT 246 (285)
Q Consensus 232 ~~gS~~VTISnn~f~ 246 (285)
+-|.-.+-+++|.|.
T Consensus 378 IFG~a~avfq~c~i~ 392 (538)
T PLN03043 378 IFGNAAAIFQNCNLY 392 (538)
T ss_pred EeecceeeeeccEEE
Confidence 666666777777775
No 52
>PLN02665 pectinesterase family protein
Probab=92.44 E-value=1.6 Score=42.98 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=44.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcce-EEeCC-----ce-----EEEeeeceEEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASV-HIAGG-----PC-----ITIQYVTNIIIH 173 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~-~I~~G-----~g-----i~i~~a~NVIIr 173 (285)
|+.+|+.. +..++|+|=+.|+ ..+.|.| ++|+|+.|.+... .|... .| -....+++++.+
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~a~ 159 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAA 159 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeEEE
Confidence 67778743 3335555555565 3467777 5789999997643 34321 01 112478999999
Q ss_pred eeEEEeccc
Q 023251 174 GLNIHDCKK 182 (285)
Q Consensus 174 nL~i~~~~~ 182 (285)
||+|++..+
T Consensus 160 nitf~Nta~ 168 (366)
T PLN02665 160 NIIIKNSAP 168 (366)
T ss_pred eeEEEeCCC
Confidence 999998643
No 53
>PLN02916 pectinesterase family protein
Probab=92.43 E-value=1.9 Score=44.19 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=42.3
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-----EEEeeece
Q 023251 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (285)
Q Consensus 112 tLr~Av~~-------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-----i~i~~a~N 169 (285)
|+.+||.. +..+++|+=+.|+- ++.+.| ++|+||.|.|...+ |.+ |.. -....+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67777732 23355555555644 466766 47899999987544 432 211 11236899
Q ss_pred EEEEeeEEEec
Q 023251 170 IIIHGLNIHDC 180 (285)
Q Consensus 170 VIIrnL~i~~~ 180 (285)
++.+||+|++-
T Consensus 279 F~A~nitf~Nt 289 (502)
T PLN02916 279 FWARDITFENT 289 (502)
T ss_pred EEEEeeEEEeC
Confidence 99999999985
No 54
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.42 E-value=1.4 Score=46.63 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=66.2
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------CceE----E-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPCI----T-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~gi----~-i~~a~NVII 172 (285)
|+.+||.. +..++||+=+.|+ ..+.+.| +.|+|+.|.|...+ |.+ |.+- + ...+++++.
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a 341 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA 341 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence 67778743 2234444444454 3466776 46889999987654 332 2110 1 136899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++-... ..+-|+-+. .+...-+.+|.|.-.. .|.+|.+-|
T Consensus 342 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 404 (670)
T PLN02217 342 KNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFG 404 (670)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEec
Confidence 99999985321 122334433 3556666666665432 344555555
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 405 ~a~avfq~C~I~ 416 (670)
T PLN02217 405 DAAAVFQNCTLL 416 (670)
T ss_pred CceEEEEccEEE
Confidence 555666666664
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=92.33 E-value=2.1 Score=44.13 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=64.7
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce----EE-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g----i~-i~~a~NVII 172 (285)
|+.+||.. +..+++|+=+.|+-+ +.+.| ++|+||.|.|...+ |.+ |.+ -+ ...+++++.
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~a~~F~a 309 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKGKGFIA 309 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEEECCCEEE
Confidence 55666632 222333333334433 56666 57899999986533 432 111 01 236899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++-... ..+-|+-+. .+..+-+.+|.|.... -|.+|.+-|
T Consensus 310 ~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG 372 (530)
T PLN02933 310 KDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFG 372 (530)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceecc
Confidence 99999985321 122344443 3566677777776543 344555555
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-..-+.+|.+.
T Consensus 373 ~a~avFq~C~i~ 384 (530)
T PLN02933 373 NAAVVFQNCSLY 384 (530)
T ss_pred CceEEEeccEEE
Confidence 555666666664
No 56
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.09 E-value=1.6 Score=45.46 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=73.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce----EE-EeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC----IT-IQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g----i~-i~~a~NVII 172 (285)
|+.+||.. +..++|++=+.|+ ..+.+.| ..|+||.|.|..-+ |.+ |.. -+ ...+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 67777743 2334555545564 3466666 47999999987644 332 211 01 136799999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeecC
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIHG 234 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~g 234 (285)
+||+|++-... ...-|+-+. ++...-+-+|.|.... .|.+|.+-|
T Consensus 367 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAGP-----------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999985311 112344443 4677778888777632 566777777
Q ss_pred CceEEEEcceec
Q 023251 235 STAITISNNFMT 246 (285)
Q Consensus 235 S~~VTISnn~f~ 246 (285)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 777888888887
No 57
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.09 E-value=2 Score=44.81 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=69.0
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCc-ceEe---ccCeEEeccCcceE-EeCCce----E-E------EeeeceEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKE-ELIM---NSFKTIDGRGASVH-IAGGPC----I-T------IQYVTNII 171 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~-~L~v---~SnkTI~G~ga~~~-I~~G~g----i-~------i~~a~NVI 171 (285)
|+.+||.. +..++||+=+.|+- .+ .|.| .+|+||.|.|...+ |.++.. . + ...+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRY--EENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEE--EEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEE
Confidence 67778743 33355555555664 34 3666 57999999987544 443221 1 1 23689999
Q ss_pred EEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeec
Q 023251 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (285)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (285)
.+||+|++-.+. ..+-|+-+. .+.+.-+.+|.|.-.. .|.+|.+-
T Consensus 364 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 426 (587)
T PLN02484 364 ARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIF 426 (587)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceec
Confidence 999999985321 112333333 3566666666665533 45556666
Q ss_pred CCceEEEEcceec
Q 023251 234 GSTAITISNNFMT 246 (285)
Q Consensus 234 gS~~VTISnn~f~ 246 (285)
|.-..-+++|.|.
T Consensus 427 G~a~avfq~C~i~ 439 (587)
T PLN02484 427 GNAAVVLQNCSIY 439 (587)
T ss_pred ccceeEEeccEEE
Confidence 6666667777765
No 58
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.45 E-value=2.4 Score=44.06 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=69.4
Q ss_pred hHHHHhhc-----CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-E---E-EeeeceEE
Q 023251 112 TLRYAVIQ-----DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-I---T-IQYVTNII 171 (285)
Q Consensus 112 tLr~Av~~-----~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-i---~-i~~a~NVI 171 (285)
|..+||.. +++.+|.+ +.|+- .+.+.| ..|+||.|.|..-+ |.+ |.. + + ...+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~i-k~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYV-KKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAVFGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEE-eCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeEECCCeE
Confidence 56677743 24444444 44553 466666 46899999987544 331 110 0 1 13679999
Q ss_pred EEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeeeec
Q 023251 172 IHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDAIH 233 (285)
Q Consensus 172 IrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 233 (285)
.+||+|++.... ...-|+-+. .+...-+.+|.|.... .|.+|.+-
T Consensus 349 a~~itf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAGP-----------------IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 999999985311 122344443 4677777777776543 45566666
Q ss_pred CCceEEEEcceec
Q 023251 234 GSTAITISNNFMT 246 (285)
Q Consensus 234 gS~~VTISnn~f~ 246 (285)
|.-.+-++||.|.
T Consensus 412 G~a~avfq~c~i~ 424 (565)
T PLN02468 412 GNSAVVFQNCNIL 424 (565)
T ss_pred ccceEEEeccEEE
Confidence 6677777777775
No 59
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=91.40 E-value=2.2 Score=42.00 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=27.8
Q ss_pred cceEeccCeEEeccCcceEEeCCceEEE-eeeceEEEEeeEEEe
Q 023251 137 EELIMNSFKTIDGRGASVHIAGGPCITI-QYVTNIIIHGLNIHD 179 (285)
Q Consensus 137 ~~L~v~SnkTI~G~ga~~~I~~G~gi~i-~~a~NVIIrnL~i~~ 179 (285)
+.++|+.-+|+-|.-.++-=++|.|=.+ -.+.++||++|++|+
T Consensus 45 g~~vInr~l~l~ge~ga~l~g~g~G~~vtv~aP~~~v~Gl~vr~ 88 (408)
T COG3420 45 GNFVINRALTLRGENGAVLDGGGKGSYVTVAAPDVIVEGLTVRG 88 (408)
T ss_pred ccEEEccceeeccccccEEecCCcccEEEEeCCCceeeeEEEec
Confidence 4566666677777643332233444344 378999999999995
No 60
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=91.26 E-value=2.9 Score=43.41 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred hHHHHhhc-------CCCeEEEEccceEEEeCcceEe---ccCeEEeccCcceE-EeC------Cce-----EEEeeece
Q 023251 112 TLRYAVIQ-------DEPLWIIFARDMTIRLKEELIM---NSFKTIDGRGASVH-IAG------GPC-----ITIQYVTN 169 (285)
Q Consensus 112 tLr~Av~~-------~~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga~~~-I~~------G~g-----i~i~~a~N 169 (285)
|..+||.. +..+++|+=+.|+- .+.|.| ++|+||.|.|..-+ |.+ |.+ -....+++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~ 341 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQN 341 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEEECCC
Confidence 66777742 11244444445554 466666 57899999986543 432 211 11236799
Q ss_pred EEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCC-----------------CCeeee
Q 023251 170 IIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCD-----------------DGLVDA 231 (285)
Q Consensus 170 VIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~-----------------DgliDv 231 (285)
++.+||+|++.... ..+-|+.+. ++...-+.+|.|.... .|.+|.
T Consensus 342 F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDF 404 (566)
T PLN02713 342 FVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDF 404 (566)
T ss_pred eEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccce
Confidence 99999999985321 112233332 3455556666555433 344455
Q ss_pred ecCCceEEEEcceec
Q 023251 232 IHGSTAITISNNFMT 246 (285)
Q Consensus 232 ~~gS~~VTISnn~f~ 246 (285)
+-|.-.+-+++|.|.
T Consensus 405 IFG~a~avfq~C~i~ 419 (566)
T PLN02713 405 IFGNAAVVFQNCNLY 419 (566)
T ss_pred ecccceEEEeccEEE
Confidence 555555666666664
No 61
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=91.05 E-value=1.1 Score=46.38 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=84.1
Q ss_pred CCCeEEEEccceEEEeC------cce---E-e-ccCeEEeccCcce-EEeCCceEEEeeeceEEEEeeEEEecccCCCcc
Q 023251 120 DEPLWIIFARDMTIRLK------EEL---I-M-NSFKTIDGRGASV-HIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187 (285)
Q Consensus 120 ~~P~~IvF~~~g~I~L~------~~L---~-v-~SnkTI~G~ga~~-~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ 187 (285)
..|+.+.|...-.+.+. .++ . + -+|.||.+..-+. +..+--||.+..++||.|.+.+|.- ++...
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt---gDD~I 312 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT---GDDCI 312 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec---CCceE
Confidence 57899999876555542 111 1 1 2445554442210 0002237888899999999999984 11111
Q ss_pred cccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCCCeeeee---cCCceEEEEcceecccCeEEEeecCCCcCCC
Q 023251 188 VRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAI---HGSTAITISNNFMTHHDKVMLLGHSDTYTQD 263 (285)
Q Consensus 188 i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~DgliDv~---~gS~~VTISnn~f~~h~k~~L~G~sD~~~~d 263 (285)
-.-+ | ...|+-... -+++|||-||.|+..+-+++.-. .+-.+|++-+|.|.+-+...-|...+.-. -
T Consensus 313 ~iks----g----~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G 383 (542)
T COG5434 313 AIKS----G----AGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-G 383 (542)
T ss_pred Eeec----c----cCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-e
Confidence 0000 0 011111111 26889999999999888887633 34579999999999988777776655422 1
Q ss_pred CceeEEEEceEE
Q 023251 264 KNMQVTIAFNHF 275 (285)
Q Consensus 264 ~~~~VT~h~N~F 275 (285)
..-+|+|.-|--
T Consensus 384 ~v~nI~~~~~~~ 395 (542)
T COG5434 384 GVRNIVFEDNKM 395 (542)
T ss_pred eEEEEEEecccc
Confidence 123455554433
No 62
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=90.49 E-value=1.9 Score=42.43 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=69.8
Q ss_pred eEeccCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEec
Q 023251 139 LIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDH 218 (285)
Q Consensus 139 L~v~SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDH 218 (285)
|.+..+.|-++.-.+--|....||.+.++..+.|..-+|.+... .|-..-|+||++++++.+-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 33444444444322222445788999999999999999997532 1223578999999999999999
Q ss_pred eeeecCCCCeeeeecCCceEEEEcceecc
Q 023251 219 CSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (285)
Q Consensus 219 cs~s~~~DgliDv~~gS~~VTISnn~f~~ 247 (285)
+.+|...||.. ..-|+.-+++.|.|++
T Consensus 166 ndisy~rDgIy--~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIY--SDTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEE--Ecccccceecccchhh
Confidence 99999999998 4668888888888885
No 63
>PLN02671 pectinesterase
Probab=90.12 E-value=8 Score=38.14 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=59.2
Q ss_pred hHHHHhhc----C-CCeEEEEccceEEEeCcceEe---ccCeEEeccCc---ceEEeC----------CceE-------E
Q 023251 112 TLRYAVIQ----D-EPLWIIFARDMTIRLKEELIM---NSFKTIDGRGA---SVHIAG----------GPCI-------T 163 (285)
Q Consensus 112 tLr~Av~~----~-~P~~IvF~~~g~I~L~~~L~v---~SnkTI~G~ga---~~~I~~----------G~gi-------~ 163 (285)
|+.+||.. + +|.+|.+ +.|+ ..+.|.| ++|+||.|.|. +..|.. |..+ .
T Consensus 73 TIQ~AIdavP~~~~~~~~I~I-k~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYI-LPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred CHHHHHHhchhcCCccEEEEE-eCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 56677732 2 3444444 4454 4567777 68999999874 444542 1001 1
Q ss_pred EeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCCCee
Q 023251 164 IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (285)
Q Consensus 164 i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~Dgli 229 (285)
...+++++.+||+|++..+...+ ...+-|+.+. .+.++-+.+|.|....|=|.
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy 203 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLL 203 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccE
Confidence 23679999999999986321100 0122334333 36888888888877655544
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.73 E-value=3.9 Score=39.02 Aligned_cols=114 Identities=14% Similarity=0.214 Sum_probs=59.5
Q ss_pred hHHHHhhc----CCCeEEEEccceEEEeCcceEec---cCeEEeccCcceE-EeCCc----e-------EEEeeeceEEE
Q 023251 112 TLRYAVIQ----DEPLWIIFARDMTIRLKEELIMN---SFKTIDGRGASVH-IAGGP----C-------ITIQYVTNIII 172 (285)
Q Consensus 112 tLr~Av~~----~~P~~IvF~~~g~I~L~~~L~v~---SnkTI~G~ga~~~-I~~G~----g-------i~i~~a~NVII 172 (285)
|+.+||.. +..++++|=..|+- ++.|.|. +++||.|.|...+ |.+.. + .....++|++.
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~a~~f~~ 91 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVNADDFTA 91 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE-STT-EE
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccccccceee
Confidence 57777752 33455555556654 4677773 6999999987544 43210 0 01236899999
Q ss_pred EeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceec
Q 023251 173 HGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 246 (285)
Q Consensus 173 rnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~ 246 (285)
+||+|++.... . ....-|+.+ .+.++.+.+|.|....|=|..- +...-+.+|++.
T Consensus 92 ~nit~~Nt~g~--------------~-~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~Ie 146 (298)
T PF01095_consen 92 ENITFENTAGP--------------S-GGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEHCSG--------------S-G----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeEEecCCCC--------------c-ccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEE
Confidence 99999985210 0 012345665 4588899999999877766531 223444555544
No 65
>smart00656 Amb_all Amb_all domain.
Probab=89.35 E-value=5 Score=35.60 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=54.8
Q ss_pred ccCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCc-EEee-CCceEEEece
Q 023251 142 NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHC 219 (285)
Q Consensus 142 ~SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDa-IsI~-gs~nVWIDHc 219 (285)
-.|++|.+..... ..++-+|.+.+++||+|.+.+|...... +.. ....|+ +.+. ++.+|=|-.|
T Consensus 44 irnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~~-~~~~D~~~di~~~s~~vTvs~~ 109 (190)
T smart00656 44 IRNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GFG-DDTYDGLIDIKNGSTYVTISNN 109 (190)
T ss_pred EeCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cCC-CCCCCccEEECcccccEEEECc
Confidence 3678887754321 1235688889999999999999974211 100 112344 4443 4666766667
Q ss_pred eeecCCCCeeeeecCC------ceEEEEcceecc
Q 023251 220 SLSNCDDGLVDAIHGS------TAITISNNFMTH 247 (285)
Q Consensus 220 s~s~~~DgliDv~~gS------~~VTISnn~f~~ 247 (285)
.|....-+++--...+ ..||+.+|+|.+
T Consensus 110 ~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 110 YFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred eEecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 6665444444211111 269999999985
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=86.36 E-value=6.8 Score=34.99 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=54.1
Q ss_pred eCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCc-EEee-CCceEEEeceeeecCCCCeee----
Q 023251 157 AGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDG-VSIF-GGTHIWVDHCSLSNCDDGLVD---- 230 (285)
Q Consensus 157 ~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDa-IsI~-gs~nVWIDHcs~s~~~DgliD---- 230 (285)
.++-+|.+.+++||+|.+.+|........ ....|+ +.+. ++++|=|-+|-|......++-
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 34567888999999999999998622100 011343 5664 578888888888775333221
Q ss_pred --eecCCceEEEEcceecccC-eEEEeecCCCcCCCCceeEEEEceEE
Q 023251 231 --AIHGSTAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHF 275 (285)
Q Consensus 231 --v~~gS~~VTISnn~f~~h~-k~~L~G~sD~~~~d~~~~VT~h~N~F 275 (285)
.......||+-+|+|.+.. +.=++.. -++-+.+|+|
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~ 177 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYY 177 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeee
Confidence 1222369999999997532 2212211 1577777776
No 67
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=86.14 E-value=0.5 Score=34.69 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=16.1
Q ss_pred cCCCCChhhHHHHhhhhhh
Q 023251 23 ASAVPDPELVVHEVHKSIN 41 (285)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (285)
..-.|||++|+++||+.|+
T Consensus 22 ~aY~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 22 AAYVPDPENVTNEFNRHVH 40 (56)
T ss_pred HhcCCCHHHHHHHHHHHHH
Confidence 3457999999999998875
No 68
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=86.07 E-value=25 Score=35.49 Aligned_cols=52 Identities=10% Similarity=0.223 Sum_probs=30.1
Q ss_pred eeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEee-CCceEEEeceeeecCCCCee
Q 023251 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLV 229 (285)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~-gs~nVWIDHcs~s~~~Dgli 229 (285)
..+++++.+||+|++..+.+. ....+-|+-+. .+..+-+.+|.|.-..|=|.
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy 255 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFF 255 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceee
Confidence 367999999999998642110 00122334433 35677777777665444443
No 69
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=78.55 E-value=20 Score=32.98 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred cCCCCcEEeeCCc-eEEEeceeeecCCCCeeeeecCCceEEEEcceecccCeE
Q 023251 200 VSDGDGVSIFGGT-HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKV 251 (285)
Q Consensus 200 ~~dgDaIsI~gs~-nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k~ 251 (285)
.-..||+++.+.. .+.|.-..+..+.|..|-. .+.-.++|++-+..++.|.
T Consensus 93 dVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d~GKl 144 (215)
T PF03211_consen 93 DVCEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAEDFGKL 144 (215)
T ss_dssp S-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEE
T ss_pred ccceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcCCCEE
Confidence 3467999999887 9999999999999999974 5666799999655555553
No 70
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=77.86 E-value=3.5 Score=27.51 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=25.2
Q ss_pred cEEeeCCceEEEeceeeecCCCCeeeeecCCceEEEEcceecc
Q 023251 205 GVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 247 (285)
Q Consensus 205 aIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~ 247 (285)
||.+..+++..|..+.++...||.. ...|.+-+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 4566666666677777777777544 3445666666666553
No 71
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=75.65 E-value=4.2 Score=35.06 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCceEEEeceeeecCCCCeeeeecCCceEEEEcceecccCe
Q 023251 210 GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDK 250 (285)
Q Consensus 210 gs~nVWIDHcs~s~~~DgliDv~~gS~~VTISnn~f~~h~k 250 (285)
+..++.|..|.+......-|.+..+++ ++|++|.|.+-..
T Consensus 183 ~~~~~~i~n~~~~~~~~~gi~i~~~~~-~~i~n~~i~~~~~ 222 (225)
T PF12708_consen 183 GNNNITISNNTFEGNCGNGINIEGGSN-IIISNNTIENCDD 222 (225)
T ss_dssp EEEEEEEECEEEESSSSESEEEEECSE-EEEEEEEEESSSE
T ss_pred ecceEEEEeEEECCccceeEEEECCeE-EEEEeEEEECCcc
Confidence 447888888888874444445444444 8888888876543
No 72
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=70.94 E-value=16 Score=35.68 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCCcEEeeCCceEEEeceeeecCC-----CCeeeeecCCceEEEEcceecccCeEEEeecCCCc--CCCCceeEEEEceE
Q 023251 202 DGDGVSIFGGTHIWVDHCSLSNCD-----DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY--TQDKNMQVTIAFNH 274 (285)
Q Consensus 202 dgDaIsI~gs~nVWIDHcs~s~~~-----DgliDv~~gS~~VTISnn~f~~h~k~~L~G~sD~~--~~d~~~~VT~h~N~ 274 (285)
-+-++.|..+.||.|-..+|...+ +-.|.+..++.+|=|-+|-|..|....=--+.|.. .....-.||+.+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 346788988999999999999876 33456667888999999999875443101111221 11224579999999
Q ss_pred EcCCC
Q 023251 275 FGEGL 279 (285)
Q Consensus 275 F~~~~ 279 (285)
|.++-
T Consensus 195 fhdh~ 199 (345)
T COG3866 195 FHDHD 199 (345)
T ss_pred eecCC
Confidence 97543
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=64.66 E-value=51 Score=30.02 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCceEEEeceeeecCC-CCeeee-----ecCCceEEEEcceecccCeEEEee--cCCCcC-CCCceeEEEEceEEcCCCC
Q 023251 210 GGTHIWVDHCSLSNCD-DGLVDA-----IHGSTAITISNNFMTHHDKVMLLG--HSDTYT-QDKNMQVTIAFNHFGEGLV 280 (285)
Q Consensus 210 gs~nVWIDHcs~s~~~-DgliDv-----~~gS~~VTISnn~f~~h~k~~L~G--~sD~~~-~d~~~~VT~h~N~F~~~~~ 280 (285)
.+++|+|.|+.|..+. ...++. ..|-.+..|-||.|..-..+.+.= ...... .......++.+|.+. ++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 3579999999999862 222321 355567899999999544333221 111122 234677889999996 888
Q ss_pred CC
Q 023251 281 QR 282 (285)
Q Consensus 281 ~R 282 (285)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 76
No 74
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=60.22 E-value=40 Score=31.60 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=53.7
Q ss_pred ccCeEEeccCcceE-EeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCC------ceE
Q 023251 142 NSFKTIDGRGASVH-IAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGG------THI 214 (285)
Q Consensus 142 ~SnkTI~G~ga~~~-I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs------~nV 214 (285)
.++.+|.|..-... ...|.|+.|..+ +..|+|-+|+++. .+||.+.+. .++
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~ 153 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGN 153 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccce
Confidence 56666666532111 123668888666 9999999999752 245655432 345
Q ss_pred EEeceeeecCCCCeeeee-cCCceEEEEcceecccCeEEE
Q 023251 215 WVDHCSLSNCDDGLVDAI-HGSTAITISNNFMTHHDKVML 253 (285)
Q Consensus 215 WIDHcs~s~~~DgliDv~-~gS~~VTISnn~f~~h~k~~L 253 (285)
.|.-+++....-|..-.. .....-+|.||+|++-...+.
T Consensus 154 vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 154 VISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeE
Confidence 566667777666653211 112224789999997655544
No 75
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=58.65 E-value=1.3 Score=31.68 Aligned_cols=22 Identities=41% Similarity=1.004 Sum_probs=15.2
Q ss_pred CcceeccCcccccccccccc-Cc
Q 023251 58 IDDCWRCDPNWEKNRQRLAD-CA 79 (285)
Q Consensus 58 id~cwr~~~~w~~~r~~la~-~a 79 (285)
-|+|-||+-.|+..|-.-|. |+
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~ 42 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCI 42 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHH
T ss_pred hhHHheecceeccccCcchhhee
Confidence 69999999999998877654 44
No 76
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=57.15 E-value=21 Score=34.86 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=38.3
Q ss_pred eeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecCCCCee
Q 023251 165 QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV 229 (285)
Q Consensus 165 ~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~~Dgli 229 (285)
.+.++.||||++-+++-|. +.....-|.--+.|+|+.|..||..++.++.--||
T Consensus 265 engkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred cCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccEE
Confidence 3567888888888877553 11111234556888999999999999998765555
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=41.24 E-value=56 Score=21.53 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=31.6
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCceEEEeceeeecC
Q 023251 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC 224 (285)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~nVWIDHcs~s~~ 224 (285)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4677777777777777774 34699999988888888877653
No 78
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=36.76 E-value=28 Score=25.82 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=17.8
Q ss_pred HHHHHhHhhhhcCCCCChhhHHHH
Q 023251 12 LLFLMTPALILASAVPDPELVVHE 35 (285)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (285)
++.+..|.|+++-+.|+|..|+-.
T Consensus 10 ilafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 10 ILAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred HHHHhhhHhhhcccCCCCcceeHH
Confidence 345567788777789999998654
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=30.81 E-value=89 Score=29.91 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.4
Q ss_pred EeeeceEEEEeeEEE
Q 023251 164 IQYVTNIIIHGLNIH 178 (285)
Q Consensus 164 i~~a~NVIIrnL~i~ 178 (285)
++.++||.+++-.|+
T Consensus 35 LKes~nI~~~~~~F~ 49 (277)
T PF12541_consen 35 LKESRNIELKNCIFK 49 (277)
T ss_pred cccccceEEECCEEe
Confidence 444555555554444
No 80
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.54 E-value=41 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhhhcCCCCChhhHHHHhhhhhh
Q 023251 9 SIFLLFLMTPALILASAVPDPELVVHEVHKSIN 41 (285)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (285)
++||.+||+.+|+.+|.+..+++-..+...+.+
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~~~~~~~~~~~ 38 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARELEETEKEEEEN 38 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhccccccCC
No 81
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=24.30 E-value=1e+02 Score=16.81 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=8.0
Q ss_pred ceEEEeceeeecCCC
Q 023251 212 THIWVDHCSLSNCDD 226 (285)
Q Consensus 212 ~nVWIDHcs~s~~~D 226 (285)
.+++|.+|.|+....
T Consensus 2 ~~~~i~~n~i~~~~~ 16 (26)
T smart00710 2 SNVTIENNTIRNNGG 16 (26)
T ss_pred CCEEEECCEEEeCCC
Confidence 345555555555544
No 82
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=23.09 E-value=3.2e+02 Score=26.22 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.9
Q ss_pred eeceEEEEeeEEE
Q 023251 166 YVTNIIIHGLNIH 178 (285)
Q Consensus 166 ~a~NVIIrnL~i~ 178 (285)
.++||-+.|++|.
T Consensus 96 ~~~~i~L~nv~~~ 108 (277)
T PF12541_consen 96 ECSNITLENVDIP 108 (277)
T ss_pred cccCcEEEeeEeC
Confidence 4444444444443
No 83
>PTZ00320 ribosomal protein L14; Provisional
Probab=23.07 E-value=83 Score=28.44 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=21.5
Q ss_pred CCCCCCCcceeccCcccccc-----ccccccCcccccCCCC
Q 023251 52 CGTGNPIDDCWRCDPNWEKN-----RQRLADCAIGFGKNAV 87 (285)
Q Consensus 52 ~~~~n~id~cwr~~~~w~~~-----r~~la~~a~GFG~~tt 87 (285)
--++||..+.|- ..|.--. |.+-..+|+|||.+..
T Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (188)
T PTZ00320 20 LPAGNPVNKSWF-RHNLIIRRKASYRSRWGTGAEGYGTGVP 59 (188)
T ss_pred CCCCCccchhhh-hheeEEeecchhhhccccCccccccCCc
Confidence 357999999992 2222222 3344458999998654
No 84
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=22.82 E-value=85 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=13.9
Q ss_pred CCcEEe-eCCceEEEecee
Q 023251 203 GDGVSI-FGGTHIWVDHCS 220 (285)
Q Consensus 203 gDaIsI-~gs~nVWIDHcs 220 (285)
.+-|.+ +.+.-|||+|+.
T Consensus 13 p~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 13 PDMANVTYNGVPIYIQHVD 31 (59)
T ss_pred ccceEEEECCEEEEEEEEc
Confidence 355666 468999999997
No 85
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=22.74 E-value=4.3e+02 Score=26.58 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred eEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcc---cCCCCcEEeeCCceEEEeceeeecCCCCeeeeecCCce
Q 023251 161 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT---VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTA 237 (285)
Q Consensus 161 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~---~~dgDaIsI~gs~nVWIDHcs~s~~~DgliDv~~gS~~ 237 (285)
|..+....+++||+-.|.+..-. -++... ....|+ -.-.=||.-.+...+=|-+|.|..|.=|.+. ...
T Consensus 138 g~~f~~~t~~~~hgC~F~gf~g~---cl~~~~-~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~ 209 (386)
T PF01696_consen 138 GVVFHANTNTLFHGCSFFGFHGT---CLESWA-GGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGP 209 (386)
T ss_pred eeEEEecceEEEEeeEEecCcce---eEEEcC-CcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCC
Confidence 34566889999999999875210 111000 000000 0001122222345566677777777666542 345
Q ss_pred EEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEc
Q 023251 238 ITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 276 (285)
Q Consensus 238 VTISnn~f~~h~k~~L~G~sD~~~~d~~~~VT~h~N~F~ 276 (285)
.+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 210 ~~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 210 ARIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred eEEecceecccceEEEEcc----------cEEEeccEEe
Confidence 6677777777666666654 3677888875
No 86
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=21.98 E-value=2e+02 Score=29.67 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=14.1
Q ss_pred eeeceEEEEeeEEEec
Q 023251 165 QYVTNIIIHGLNIHDC 180 (285)
Q Consensus 165 ~~a~NVIIrnL~i~~~ 180 (285)
..+++++.+||+|++.
T Consensus 267 v~~~~F~a~nitf~Nt 282 (497)
T PLN02698 267 ITGDGFIARDIGFKNA 282 (497)
T ss_pred EECCCeEEEeeEEEEC
Confidence 3779999999999985
No 87
>PRK09752 adhesin; Provisional
Probab=21.63 E-value=1e+03 Score=27.66 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=48.9
Q ss_pred cCeEEeccCcceEEeCCceEEEeeeceEEEEeeEEEecccCCCcccccCCCCcCCcccCCCCcEEeeCCc-----eEEEe
Q 023251 143 SFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGT-----HIWVD 217 (285)
Q Consensus 143 SnkTI~G~ga~~~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~r~~~dgDaIsI~gs~-----nVWID 217 (285)
++-|+.|.... || .|.-....++.|.+..|.+=... ..|-||...+.. .+-|.
T Consensus 101 ~nNtasG~~~s----GG-AIya~~~~~itI~ns~F~nN~A~-----------------g~GGAIYa~G~n~~g~v~l~I~ 158 (1250)
T PRK09752 101 ANNTVSGEYNN----GG-AIFAKENSTLNLTDVIFSGNVAG-----------------GYGGAIYSSGTNDTGAVDLRVT 158 (1250)
T ss_pred ecceecCCcCC----cc-EEEecCcceeEEeeeEEEccccC-----------------CCCCEEEEcccCCCcceEEEEE
Confidence 44556664333 23 45444556678888888752111 245666665432 36677
Q ss_pred ceeeecC-----CCCeeeeecCCceEEEEcceecccC
Q 023251 218 HCSLSNC-----DDGLVDAIHGSTAITISNNFMTHHD 249 (285)
Q Consensus 218 Hcs~s~~-----~DgliDv~~gS~~VTISnn~f~~h~ 249 (285)
.+.|... .-|.|.. -...++|++|.|.+..
T Consensus 159 NS~F~nN~A~~G~GGAIYs--~ng~vtIsnS~F~nN~ 193 (1250)
T PRK09752 159 NAMFRNNIANDGKGGAIYT--INNDVYLSDVIFDNNQ 193 (1250)
T ss_pred ecEEEccccccCCCCEEEE--ccCcEEEEeeEEeCCc
Confidence 8888774 3445542 2457999999999643
Done!