Query 023252
Match_columns 285
No_of_seqs 140 out of 1707
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 9.6E-40 2.1E-44 291.2 27.1 259 4-265 191-451 (455)
2 PRK10189 MATE family multidrug 100.0 8.4E-38 1.8E-42 281.0 26.0 257 4-262 208-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7.6E-36 1.6E-40 268.0 29.0 252 4-257 186-444 (464)
4 PRK01766 multidrug efflux prot 100.0 3.3E-35 7.2E-40 264.0 29.1 256 4-261 189-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.8E-34 3.9E-39 258.5 27.4 251 2-256 184-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.2E-32 2.6E-37 245.4 26.0 250 2-261 181-434 (441)
7 COG0534 NorM Na+-driven multid 100.0 5.6E-28 1.2E-32 215.7 26.4 210 47-259 12-223 (455)
8 PRK00187 multidrug efflux prot 100.0 1.2E-27 2.5E-32 215.1 25.1 207 47-257 5-215 (464)
9 PRK10367 DNA-damage-inducible 100.0 2.1E-27 4.6E-32 211.8 25.1 207 48-256 5-211 (441)
10 PRK10189 MATE family multidrug 100.0 4.5E-27 9.7E-32 211.6 24.9 206 48-256 25-236 (478)
11 PRK09575 vmrA multidrug efflux 100.0 1.8E-26 3.8E-31 207.0 23.3 208 47-257 7-215 (453)
12 PRK01766 multidrug efflux prot 100.0 8.3E-26 1.8E-30 203.1 26.2 210 46-258 6-219 (456)
13 TIGR01695 mviN integral membra 99.9 1.8E-25 4E-30 203.3 27.4 247 3-257 175-428 (502)
14 KOG1347 Uncharacterized membra 99.9 1E-25 2.3E-30 200.2 12.7 273 1-275 198-470 (473)
15 TIGR02900 spore_V_B stage V sp 99.9 1.3E-23 2.8E-28 190.5 23.8 248 4-256 175-433 (488)
16 PRK15099 O-antigen translocase 99.9 1E-21 2.2E-26 174.7 25.8 239 7-256 171-411 (416)
17 PF01554 MatE: MatE; InterPro 99.9 1.1E-23 2.3E-28 163.2 10.7 162 60-223 1-162 (162)
18 TIGR00797 matE putative efflux 99.9 1.2E-20 2.6E-25 163.5 23.4 194 60-256 1-196 (342)
19 PF03023 MVIN: MviN-like prote 99.9 1.1E-19 2.4E-24 162.6 28.0 242 8-257 157-403 (451)
20 TIGR00797 matE putative efflux 99.9 2.2E-20 4.8E-25 161.8 18.0 174 4-179 167-341 (342)
21 COG0728 MviN Uncharacterized m 99.9 1.8E-18 3.8E-23 153.5 27.9 242 8-257 191-437 (518)
22 PRK10459 colanic acid exporter 99.8 9.3E-16 2E-20 139.4 25.6 239 4-256 165-404 (492)
23 COG2244 RfbX Membrane protein 99.7 6.1E-15 1.3E-19 133.6 25.1 224 8-239 171-394 (480)
24 KOG1347 Uncharacterized membra 99.7 2.4E-15 5.1E-20 134.2 19.7 206 48-257 24-230 (473)
25 TIGR02900 spore_V_B stage V sp 99.6 1.9E-14 4.2E-19 130.6 20.0 196 55-257 2-204 (488)
26 TIGR01695 mviN integral membra 99.5 2E-12 4.4E-17 117.8 22.5 196 54-256 2-206 (502)
27 PRK15099 O-antigen translocase 99.5 2.8E-12 6.1E-17 114.2 17.8 191 55-256 4-196 (416)
28 PF03023 MVIN: MviN-like prote 99.2 1.1E-09 2.3E-14 98.4 19.5 174 80-258 3-183 (451)
29 COG0728 MviN Uncharacterized m 98.9 3.8E-07 8.3E-12 81.9 21.7 201 55-257 10-216 (518)
30 PF04506 Rft-1: Rft protein; 98.6 5.5E-06 1.2E-10 75.7 18.5 205 50-256 251-469 (549)
31 PF01943 Polysacc_synt: Polysa 98.5 5.1E-05 1.1E-09 63.1 19.7 186 56-256 3-190 (273)
32 PF13440 Polysacc_synt_3: Poly 98.4 0.00013 2.8E-09 60.0 19.5 164 72-253 5-169 (251)
33 PRK10459 colanic acid exporter 98.3 6.4E-05 1.4E-09 68.6 18.1 182 52-251 5-188 (492)
34 PF07260 ANKH: Progressive ank 98.3 0.00024 5.2E-09 59.2 19.3 160 46-212 5-168 (345)
35 PF14667 Polysacc_synt_C: Poly 98.3 7.8E-06 1.7E-10 61.7 9.5 80 175-257 1-80 (146)
36 KOG2864 Nuclear division RFT1 98.2 8.7E-05 1.9E-09 64.6 15.7 203 51-256 238-448 (530)
37 PF01943 Polysacc_synt: Polysa 98.1 3.4E-05 7.5E-10 64.2 11.1 108 7-120 165-272 (273)
38 COG2244 RfbX Membrane protein 97.9 0.0028 6E-08 57.6 19.6 184 52-253 6-192 (480)
39 PF13440 Polysacc_synt_3: Poly 97.5 0.0022 4.8E-08 52.6 11.5 103 7-120 147-251 (251)
40 PF14667 Polysacc_synt_C: Poly 92.1 1.8 3.9E-05 32.1 8.9 30 3-32 50-79 (146)
41 COG4267 Predicted membrane pro 89.5 14 0.0003 32.4 20.5 136 104-256 75-210 (467)
42 PF07260 ANKH: Progressive ank 88.0 8.3 0.00018 32.9 10.1 102 46-151 229-342 (345)
43 PF04505 Dispanin: Interferon- 82.6 9.1 0.0002 25.6 6.6 40 107-146 34-73 (82)
44 COG2271 UhpC Sugar phosphate p 77.6 54 0.0012 29.5 11.7 24 180-203 114-137 (448)
45 COG4267 Predicted membrane pro 69.4 82 0.0018 27.9 12.0 45 124-168 317-361 (467)
46 TIGR00881 2A0104 phosphoglycer 55.3 1.3E+02 0.0028 25.5 10.1 16 109-124 45-60 (379)
47 KOG2234 Predicted UDP-galactos 53.0 1.6E+02 0.0034 25.7 19.6 52 14-65 50-103 (345)
48 PRK01637 hypothetical protein; 51.6 1.5E+02 0.0032 25.0 16.3 14 112-125 111-124 (286)
49 COG1620 LldP L-lactate permeas 51.3 1.1E+02 0.0025 28.1 8.4 84 169-265 179-262 (522)
50 PRK10739 putative antibiotic t 47.8 1.2E+02 0.0025 24.2 7.2 60 114-177 21-80 (197)
51 PF05975 EcsB: Bacterial ABC t 47.1 2.1E+02 0.0045 25.4 16.0 37 124-160 88-124 (386)
52 PRK09546 zntB zinc transporter 46.3 68 0.0015 27.6 6.2 42 216-259 273-323 (324)
53 PF14184 YrvL: Regulatory prot 45.8 1.2E+02 0.0026 22.3 11.2 113 134-250 5-118 (132)
54 PF14248 DUF4345: Domain of un 44.7 1.2E+02 0.0025 21.9 12.1 122 130-255 1-122 (124)
55 PF07074 TRAP-gamma: Transloco 43.9 1.2E+02 0.0026 23.4 6.3 42 214-255 26-67 (170)
56 KOG2864 Nuclear division RFT1 43.5 2.6E+02 0.0057 25.6 16.4 143 60-212 17-162 (530)
57 PF05393 Hum_adeno_E3A: Human 42.9 18 0.0004 24.2 1.7 27 229-255 29-55 (94)
58 COG0170 SEC59 Dolichol kinase 40.4 36 0.00078 27.5 3.4 48 102-149 118-165 (216)
59 PF01102 Glycophorin_A: Glycop 39.4 38 0.00082 24.6 3.0 24 233-256 67-90 (122)
60 COG2056 Predicted permease [Ge 38.9 2.3E+02 0.0049 25.1 7.9 57 107-164 74-139 (444)
61 PF01914 MarC: MarC family int 37.5 2E+02 0.0044 22.9 7.2 58 115-176 22-79 (203)
62 PF03092 BT1: BT1 family; Int 37.0 3.1E+02 0.0068 24.6 9.9 77 62-144 326-402 (433)
63 PF03547 Mem_trans: Membrane t 36.0 2.3E+02 0.0051 24.7 8.2 7 141-147 38-44 (385)
64 PRK10207 dipeptide/tripeptide 35.8 3.5E+02 0.0076 24.8 10.5 25 142-166 463-487 (489)
65 TIGR00822 EII-Sor PTS system, 35.4 2.7E+02 0.0058 23.4 17.5 45 92-136 96-143 (265)
66 TIGR00427 membrane protein, Ma 34.9 2.3E+02 0.005 22.6 7.1 60 114-177 24-83 (201)
67 PF00558 Vpu: Vpu protein; In 34.0 80 0.0017 21.1 3.6 21 252-272 28-48 (81)
68 PF05684 DUF819: Protein of un 33.8 3.4E+02 0.0074 24.1 11.6 19 125-143 73-91 (378)
69 PF03806 ABG_transport: AbgT p 29.5 4.6E+02 0.01 24.3 9.3 78 171-248 295-375 (502)
70 PF10669 Phage_Gp23: Protein g 26.9 1.7E+02 0.0036 20.1 4.2 9 252-260 35-43 (121)
71 PRK11111 hypothetical protein; 25.8 3.6E+02 0.0077 21.8 7.1 53 121-177 34-86 (214)
72 COG3158 Kup K+ transporter [In 25.2 5.1E+02 0.011 24.5 8.2 141 103-250 291-443 (627)
73 TIGR01301 GPH_sucrose GPH fami 25.0 5.5E+02 0.012 23.6 14.4 33 52-84 4-36 (477)
74 PF13197 DUF4013: Protein of u 23.8 3.3E+02 0.0071 20.7 13.4 55 16-71 9-63 (169)
75 PRK10995 inner membrane protei 22.6 4.1E+02 0.009 21.4 7.1 57 115-175 26-82 (221)
76 COG5130 YIP3 Prenylated rab ac 21.5 96 0.0021 23.0 2.5 74 47-124 31-104 (169)
77 PF01102 Glycophorin_A: Glycop 21.0 1.1E+02 0.0023 22.3 2.6 22 9-31 67-88 (122)
78 PF06808 DctM: DctM-like trans 20.9 6.2E+02 0.013 22.7 18.7 83 45-150 203-285 (416)
79 TIGR00383 corA magnesium Mg(2+ 20.4 5.3E+02 0.012 21.8 10.8 17 243-259 301-317 (318)
80 PRK09757 PTS system N-acetylga 20.1 5.3E+02 0.011 21.7 17.3 46 92-137 97-145 (267)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=9.6e-40 Score=291.24 Aligned_cols=259 Identities=26% Similarity=0.401 Sum_probs=242.6
Q ss_pred cC-CCcchhHHHHHHHHHHHHHHHHHHHhccccc-hhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 4 IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSEC-EKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 4 ~~-~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
++ ||+.|||+||+++++++++++++++.++++. .....+..+.+++.+|+++++|+|..++++.+...+...+.++++
T Consensus 191 ~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T COG0534 191 FGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVAR 270 (455)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 45 9999999999999999999999999887652 222233334678999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252 82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA 161 (285)
Q Consensus 82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 161 (285)
+| ++++|+|+++.++.++.++++.|++++.+++++|++|+||+|++++..+.++.+++++++..+++++++++++.++
T Consensus 271 ~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~l 348 (455)
T COG0534 271 LG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISL 348 (455)
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH
Q 023252 162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT 241 (285)
Q Consensus 162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~ 241 (285)
|++|+|+.+.+..++++..+.+++++++.+..+.+||.||++.++++++.+.|++.+|+.|++...+ +|..|+|+++..
T Consensus 349 F~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~ 427 (455)
T COG0534 349 FTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPL 427 (455)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877 999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHH
Q 023252 242 GSFVQAALLALKIVFTDWGKQASK 265 (285)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
++.+..+...+++++.+|+++..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 428 SLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999999999999999888876553
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.4e-38 Score=280.96 Aligned_cols=257 Identities=14% Similarity=0.158 Sum_probs=235.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhcccc--chhcccC-CCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSE--CEKTRAS-FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG 80 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (285)
++||+.|+++||.+++++.+++..++++++++ .+.++++ +.+.+++.+|+++++|.|..++.........+.+.+++
T Consensus 208 ~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~ 287 (478)
T PRK10189 208 QGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVA 287 (478)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998887776654322 2222222 12235789999999999999999999999998888899
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252 81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY 160 (285)
Q Consensus 81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (285)
++| +.++|+++++.++..+.+++..|+++|.++++||++|+||++|+|+..+.+..++++.++.++++++++++++.+
T Consensus 288 ~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 365 (478)
T PRK10189 288 GMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLAS 365 (478)
T ss_pred HcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252 161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240 (285)
Q Consensus 161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~ 240 (285)
+|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.++++++.+.|++.+|+.|++....++|..|+|++..
T Consensus 366 lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~ 445 (478)
T PRK10189 366 FYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMF 445 (478)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHH
Q 023252 241 TGSFVQAALLALKIVFTDWGKQ 262 (285)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
+++.+.+++..+++++++|+++
T Consensus 446 ~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 446 LDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 9999999999999999999873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.6e-36 Score=267.97 Aligned_cols=252 Identities=23% Similarity=0.302 Sum_probs=226.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhccccch-hc-ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECE-KT-RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
++||+.|+++||.+++....+.+++|++++++.+ .+ +++..+.+++.+|+++++++|.+++++.+...+.+++.++++
T Consensus 186 p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~ 265 (464)
T PRK00187 186 PKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGA 265 (464)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988887777776543222 11 122223567889999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252 82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA 161 (285)
Q Consensus 82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 161 (285)
+| ++++|++++++++..+.+.+..|++++..+++||++|+||+|++++..+.++.++++.+++.+++++++++++.++
T Consensus 266 ~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ 343 (464)
T PRK00187 266 LG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGL 343 (464)
T ss_pred cC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 6699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--ch---HHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Q 023252 162 LSS--SE---NIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLL 236 (285)
Q Consensus 162 f~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~ 236 (285)
|++ |+ |+.+.+..++++.+++.++++++.++.+++||.||++.++++++.+.|++++|+.|++.+.+++|+.|+|
T Consensus 344 ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw 423 (464)
T PRK00187 344 FLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVW 423 (464)
T ss_pred HcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeH
Confidence 963 44 7889999999999999999999999999999999999999999999889999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 023252 237 IGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~ 257 (285)
+++.+++.+..+....+++++
T Consensus 424 ~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 424 WGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.3e-35 Score=264.00 Aligned_cols=256 Identities=22% Similarity=0.382 Sum_probs=234.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhccccch--hcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECE--KTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
+++|+.|+++||.+++++..++..++++++++.+ +.+.++.+.+++.+|+++++++|..++++.+...+.+++.++++
T Consensus 189 ~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~ 268 (456)
T PRK01766 189 PELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSP 268 (456)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999888887654322 11222223457789999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252 82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA 161 (285)
Q Consensus 82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 161 (285)
+| ++++|+++++.++.++...++.|++.+.++.+||++|+||++++++..+.++.+++.++++.+++++.+++++.++
T Consensus 269 ~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 346 (456)
T PRK01766 269 LG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALL 346 (456)
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 6689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH
Q 023252 162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT 241 (285)
Q Consensus 162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~ 241 (285)
|++|+|+.+.+..++++..+..++.+++.+..+++||.||++.++++++.+.|++++|..+++...+++|..|+|+++.+
T Consensus 347 f~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~ 426 (456)
T PRK01766 347 YTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLII 426 (456)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHH
Q 023252 242 GSFVQAALLALKIVFTDWGK 261 (285)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~ 261 (285)
++++.+++..+++++.+|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 427 GLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887766553
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.8e-34 Score=258.54 Aligned_cols=251 Identities=14% Similarity=0.116 Sum_probs=223.2
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 2 FKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 2 ~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
+.++||+.|+++||.+++++.+++.+++++++++..+...+..+.+++.+|+++++|.|..+++........+.+.+.++
T Consensus 184 ~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~ 263 (453)
T PRK09575 184 GWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFME 263 (453)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999988877654432211112223467889999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252 82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA 161 (285)
Q Consensus 82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 161 (285)
+|+ +.++|+++++.++..+...+..|++++..+++||++|+||+||+++..+.++.+++..+++.+++++++++++.++
T Consensus 264 ~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~l 342 (453)
T PRK09575 264 YGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIAL 342 (453)
T ss_pred hCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 984 3579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252 162 LSS-SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240 (285)
Q Consensus 162 f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~ 240 (285)
|++ |||+.+.+..|+++.+++.++++++.+..+++||.||++.+++.++.+ +++++|..|++... +|..|+|+++.
T Consensus 343 f~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~ 419 (453)
T PRK09575 343 FNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMP 419 (453)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHH
Confidence 995 789999999999999999999999999999999999999999999887 67899999998754 79999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 023252 241 TGSFVQAALLALKIVF 256 (285)
Q Consensus 241 ~~~~~~~~~~~~~~~~ 256 (285)
+++.+.+++..+++++
T Consensus 420 ~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 420 LSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988877666554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=245.44 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=206.9
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHH-HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252 2 FKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV-FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG 80 (285)
Q Consensus 2 ~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (285)
++++||+.|+++||.+++++.+++..++++++++.++...+..+++ ++.+|++++++.|..+++..+...+.+.+.+++
T Consensus 181 ~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~ 260 (441)
T PRK10367 181 MGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGA 260 (441)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999888777765322111111111122 357899999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252 81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY 160 (285)
Q Consensus 81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (285)
++| +.++|+|+++.++.++.+++..|+++|.++++||++|+||+||+|+..+.+++++++++.+.+++++++++++.+
T Consensus 261 ~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 338 (441)
T PRK10367 261 RLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIA 338 (441)
T ss_pred hcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccC---cchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhH
Q 023252 161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSG---WQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLI 237 (285)
Q Consensus 161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~ 237 (285)
+|++|+|+.+.+..++++.++..+...+.....++++|.+ |++.++++++.+.|+..++. +++|..|+|+
T Consensus 339 lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~ 411 (441)
T PRK10367 339 LLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWL 411 (441)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHH
Confidence 9999999999999999999876443334444444455555 59999999999866422222 2479999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHH
Q 023252 238 GLATGSFVQAALLALKIVFTDWGK 261 (285)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
++.+++.+.+++..++++++ |+|
T Consensus 412 a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 412 ALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999987766554 743
No 7
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=5.6e-28 Score=215.72 Aligned_cols=210 Identities=23% Similarity=0.279 Sum_probs=201.9
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252 47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 126 (285)
Q Consensus 47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~ 126 (285)
.++..|+++++++|..++++.+.....+|++++|+++ ++++|+.++++++..+...+..+++.+..+.+||++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4678999999999999999999999999999999999 77999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252 127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 206 (285)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 206 (285)
+++++..++++.++++.+++..++.+.+++++.++++.++|+.+.+.+|+++..++.|+..++.+..+++|+.||++.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hc-CCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 023252 207 FVNLGAYYLVGIPIAAVLAFV-FQ-LKGKGLLIGLATGSFVQAALLALKIVFTDW 259 (285)
Q Consensus 207 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (285)
++++++ .+.|+.++|++++. ++ +|..|+.+|+++++.+.++...+++.+++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999 89999999999998 57 999999999999999999998888877653
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.96 E-value=1.2e-27 Score=215.06 Aligned_cols=207 Identities=17% Similarity=0.032 Sum_probs=191.5
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252 47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 126 (285)
Q Consensus 47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~ 126 (285)
++++.|+++++++|.+++++.+.+...+|+.+++++| ++++|+++++.++.++...+..|++++..+++||++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4778999999999999999999999999999999999 66999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252 127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 206 (285)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 206 (285)
+|+++..+.++.++.+++++..++.+ +.+++.++|+.|+|+.+.+.+|++++.++.++..+...+++++|+.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 207 FVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 207 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
+.++++ .+++++++|++++. +++|..|+++|+++++.+..+.+.++++++
T Consensus 162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 78899999998864 358999999999999888877665555543
No 9
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.96 E-value=2.1e-27 Score=211.76 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=194.8
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChH
Q 023252 48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK 127 (285)
Q Consensus 48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~ 127 (285)
+++.|+++++++|..++++.......+|+.+++++|. +.++|+.+++.++.++...+..+++.+..+++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 5668999999999999999999999999999999942 558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHH
Q 023252 128 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF 207 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 207 (285)
++++..++++.++++.+++..++...+.+++..+++.|+|+.+.+.+|++++.++.|+..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 208 VNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 208 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.++++ .+++++++|++.+.+++|..|+++|+.+++.+.+++..+++++
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7889999999999889999999999999999988877665554
No 10
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.96 E-value=4.5e-27 Score=211.60 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=193.1
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChH
Q 023252 48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK 127 (285)
Q Consensus 48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~ 127 (285)
-+.+|+++++++|..++++.......+++.+++++| ++++|++++++++.++...+..|++++..+++||++|+||+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 445899999999999999999999999999999999 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252 128 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 205 (285)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 205 (285)
++++..+.++.++++++++.+++.+++++++.++|+ .|+|+.+.+.+|+++..++.++..+..++.+++||.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
+++++.+ +++++++++++++. +++|..|+++|+.+++++..++..+.+.+
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 88999999998864 47999999999999999988876655543
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.95 E-value=1.8e-26 Score=206.99 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=196.5
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-CCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252 47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLL-PNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125 (285)
Q Consensus 47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~ 125 (285)
+++..|+++++++|..++++...+...+|+.+++++ | ++++++++++.++.++...+..+++.+..+++||++|+||
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999996 8 6699999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 205 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 205 (285)
+|++++..+.++.++++.+++.+++.+++++++.++|+.|+++.+.+.+|+++..++.++..+.....+++|+.||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 164 (453)
T PRK09575 85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA 164 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 206 AFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
++.++.+ .++++++++++.+.+++|..|+++++.+++.+.+++..++++++
T Consensus 165 ~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 165 TGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998 78999999999988889999999999999999998876666543
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.95 E-value=8.3e-26 Score=203.13 Aligned_cols=210 Identities=15% Similarity=0.108 Sum_probs=195.8
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252 46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125 (285)
Q Consensus 46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~ 125 (285)
..++.+|+++++++|..++++..++...+|+.+++++| ++++++++++.++..+...+..|++.+..+.+||++|+||
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788999999999999999999999999999999999 6689999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 205 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 205 (285)
++++++..+.++.++++.+++++++++++++++..+++.|+++.+.+.+|+++.+++.++..+..++.+++|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252 206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFTD 258 (285)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 258 (285)
++.++.+ .++++++++++++. +++|..|+++++.+++++..+...++.++++
T Consensus 164 ~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 164 MVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999998 68899999988753 4689999999999999999998877766543
No 13
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.95 E-value=1.8e-25 Score=203.31 Aligned_cols=247 Identities=17% Similarity=0.106 Sum_probs=216.5
Q ss_pred ccCCCcchhH--HHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252 3 KIKLGSNGAA--LAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG 80 (285)
Q Consensus 3 ~~~~Gv~Gaa--~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (285)
..++|+.|++ +|+++++.++.++..+++++++. +. +.+. +.+++.+|++++.+.|..++++..++...++..+.+
T Consensus 175 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~ 251 (502)
T TIGR01695 175 DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LL-KPRF-NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALAS 251 (502)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cc-cCcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999 99999999999888777765431 11 1111 124677899999999999999999999999998888
Q ss_pred cCCCccchhhHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 023252 81 LLPNPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILG 159 (285)
Q Consensus 81 ~~g~~~~~~aa~~~~~~i~~~~~~-~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (285)
.+| +.++++|+.+.++.+++.. +..+++++..|.+|+++|+||++++++..++++++...++++..+.++++++++.
T Consensus 252 ~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii 329 (502)
T TIGR01695 252 FLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIV 329 (502)
T ss_pred cCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 5589999999999988765 5789999999999999999999999999999999999999999999999999999
Q ss_pred ccccC----chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Q 023252 160 YALSS----SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGL 235 (285)
Q Consensus 160 ~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~ 235 (285)
++|.+ |+|..+.+..+++++++..++.+++.++...+++.||++.+++.++.+ .++++++++++... +|..|+
T Consensus 330 ~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~ 406 (502)
T TIGR01695 330 SLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIFP--LGLVGI 406 (502)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHHH--HhhhHH
Confidence 99875 567788899999999999999999999999999999999999999998 67899999988654 789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 023252 236 LIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
|+++.+++.+..+...++.+|+
T Consensus 407 ~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 407 ALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988887776654
No 14
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.93 E-value=1e-25 Score=200.18 Aligned_cols=273 Identities=46% Similarity=0.766 Sum_probs=255.3
Q ss_pred CcccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252 1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG 80 (285)
Q Consensus 1 i~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (285)
++.+++|+.|++++..++++....++..|..... ....|..+..+ ++.+++.++++.|..++...+.+.+.+.....|
T Consensus 198 v~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G 275 (473)
T KOG1347|consen 198 VSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAG 275 (473)
T ss_pred hhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999988665 66677776655 999999999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252 81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY 160 (285)
Q Consensus 81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (285)
.+++++.++++.+++.++....++++.+++.+.++++++.+|++|++++|.....+...++..+...+..++.+++.+..
T Consensus 276 ~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ 355 (473)
T KOG1347|consen 276 LLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQ 355 (473)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252 161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240 (285)
Q Consensus 161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~ 240 (285)
+|++|+|+.+...+..++.+.+.+.++.+.+..++.+|.|+.+...++++....++++|+..++.+..++|..|.|.++.
T Consensus 356 ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~ 435 (473)
T KOG1347|consen 356 IFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGIL 435 (473)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 023252 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 275 (285)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (285)
.+..+..........+.+|++..++++++......
T Consensus 436 ~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 436 LGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred HHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 99888888888888889999999988887665443
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.93 E-value=1.3e-23 Score=190.51 Aligned_cols=248 Identities=16% Similarity=0.166 Sum_probs=205.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhc--ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKT--RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
.++|+.|+++++.+++.+..++..++++++++.+.+ +.+..+.+++.+|++++.++|..++++.......+|+.++++
T Consensus 175 ~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~ 254 (488)
T TIGR02900 175 LEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQ 254 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999877776544332211 112223457789999999999999999999999999888765
Q ss_pred C----CCc-cchhhHH----HHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 82 L----PNP-KLEASVF----SLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL 152 (285)
Q Consensus 82 ~----g~~-~~~~aa~----~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (285)
. |.. ..+.+.+ +++.++.+++..+..+++++..|.+++++|+||+++.++..+++++++...+++..+.+.
T Consensus 255 ~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (488)
T TIGR02900 255 RLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILL 334 (488)
T ss_pred HHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 210 1112222 345567777777889999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 023252 153 FCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKG 232 (285)
Q Consensus 153 ~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 232 (285)
++++++..+|.++++ +..+++++++..++.+++....+++++.||++.+++.++.+ .++++++++.+...+.+|.
T Consensus 335 ~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~ 409 (488)
T TIGR02900 335 VIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINI 409 (488)
T ss_pred HHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhcccccc
Confidence 999999999876544 56789999999999999999999999999999999999998 6889999988875566899
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHh
Q 023252 233 KGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 233 ~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.|+++++.+++.+..++..+..+|
T Consensus 410 ~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 410 YGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877765
No 16
>PRK15099 O-antigen translocase; Provisional
Probab=99.91 E-value=1e-21 Score=174.70 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=198.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-cCCCc
Q 023252 7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG-LLPNP 85 (285)
Q Consensus 7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~-~~g~~ 85 (285)
|+.|+++||++++.+..+..++++.++++.+.++.++ +.+++.+|+++++|.|..+++....+....++.+++ .+|
T Consensus 171 Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g-- 247 (416)
T PRK15099 171 GYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS-- 247 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 9999999999999999888777776544322211122 245788999999999999999999999999988885 888
Q ss_pred cchhhHHHHHHHHHHH-HHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 023252 86 KLEASVFSLCFTITYL-HYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSS 164 (285)
Q Consensus 86 ~~~~aa~~~~~~i~~~-~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 164 (285)
+++++.|+.+.++.+. ...+..+++++..|.++++ +|++|.++..++........+++.++.++++++++.++|.+
T Consensus 248 ~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g 324 (416)
T PRK15099 248 WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFS 324 (416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6699999999999774 4788999999999999995 78899999999999999999999999999999999999988
Q ss_pred chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 023252 165 SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSF 244 (285)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~ 244 (285)
|+- +.+.+++++.++..++...+..+...+-..++++......+.. .++++|+++++... +|..|+++++++++.
T Consensus 325 ~~~--~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~ 399 (416)
T PRK15099 325 NKF--TAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYI 399 (416)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence 652 1256788888888888877777766666777777777777766 78889999998766 899999999999999
Q ss_pred HHHHHHHHHHHh
Q 023252 245 VQAALLALKIVF 256 (285)
Q Consensus 245 ~~~~~~~~~~~~ 256 (285)
+..+...+...+
T Consensus 400 ~~~~~~~~~~~~ 411 (416)
T PRK15099 400 VYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHH
Confidence 999877655543
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.90 E-value=1.1e-23 Score=163.15 Aligned_cols=162 Identities=20% Similarity=0.387 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 023252 60 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL 139 (285)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~ 139 (285)
|..++++.+.+...+++.+++++| ++++++++++.++.++...+..|++++..+.+||++|+||++|+++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999998 669999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 023252 140 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP 219 (285)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 219 (285)
+.+++++.+++.+++++++.++|++|+|+.+.+.+|+++..++.++..+..+..+++||.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred HHHH
Q 023252 220 IAAV 223 (285)
Q Consensus 220 ~~~~ 223 (285)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 18
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.88 E-value=1.2e-20 Score=163.50 Aligned_cols=194 Identities=21% Similarity=0.225 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 023252 60 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL 139 (285)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~ 139 (285)
|.+++++...+...+++.+++++| ++++++++.+.++..+...+..|++++..+.+++++|++|+|++++..+.++.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 788899999999999999999999 668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 023252 140 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP 219 (285)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 219 (285)
..+.+++.+++.+++++++.++++.|++..+.+..+++++.++.++.+++..+.+++|+.||.+.++..++.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999988888889999999999999999999999999999999999999999988 678889
Q ss_pred HHHHHHH-Hhc-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 220 IAAVLAF-VFQ-LKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 220 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.++++.. .++ +|..|+++++.+++.+..+...++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 566 789999999999999998887766654
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.88 E-value=1.1e-19 Score=162.59 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=214.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252 8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL 87 (285)
Q Consensus 8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 87 (285)
+.+.++|..++.+++.++.+...++.+...+...+ ...+..|++++...|..+.....++...++..+.+.++++
T Consensus 157 i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G-- 231 (451)
T PF03023_consen 157 IYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD---WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG-- 231 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--
Confidence 78899999999999999988887654422111111 2255689999999999999999999999999999999955
Q ss_pred hhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Q 023252 88 EASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS--- 163 (285)
Q Consensus 88 ~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--- 163 (285)
.+++++.+.++.+++. .+..+++++..|..|+...+||.++.++..+++++....+.+|.++.++.+++++.+++.
T Consensus 232 ~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG 311 (451)
T PF03023_consen 232 SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERG 311 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccC
Confidence 9999999999999987 466799999999999999999999999999999999999999999999999999988875
Q ss_pred -CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252 164 -SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG 242 (285)
Q Consensus 164 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~ 242 (285)
-|+|..+....++++++++.++.+++..+...+.+.+|+|.++.+++.+ .++++.+++++... +|..|+.+++.++
T Consensus 312 ~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~sl~ 388 (451)
T PF03023_consen 312 AFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATSLS 388 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3677788999999999999999999999999999999999999999998 78899998777665 8999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 023252 243 SFVQAALLALKIVFT 257 (285)
Q Consensus 243 ~~~~~~~~~~~~~~~ 257 (285)
.++.+++..+..+|+
T Consensus 389 ~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 389 AIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887777665
No 20
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.86 E-value=2.2e-20 Score=161.81 Aligned_cols=174 Identities=27% Similarity=0.452 Sum_probs=155.1
Q ss_pred cC-CCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252 4 IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLL 82 (285)
Q Consensus 4 ~~-~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~ 82 (285)
++ +|+.|+++|+.+++++.+++..++.+++++.+.++++..+.+++.+|++++++.|.++.++...+...+++.+.+++
T Consensus 167 ~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~ 246 (342)
T TIGR00797 167 FGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARL 246 (342)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 45 78999999999999999998888776544333332232334578899999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 023252 83 PNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYAL 162 (285)
Q Consensus 83 g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf 162 (285)
| +.++++|+++.++.++...++.+++++..|.+++++|+||++++++..++++++.++.+++..+.++++++++.++|
T Consensus 247 g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 324 (342)
T TIGR00797 247 G--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLF 324 (342)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 56999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhhHHH
Q 023252 163 SSSENIVHRLADMVPFI 179 (285)
Q Consensus 163 ~~~~~~~~~~~~~l~~~ 179 (285)
++||++.+.+..++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 325 TNDPEVLELAAIYLIFV 341 (342)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999888764
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.85 E-value=1.8e-18 Score=153.51 Aligned_cols=242 Identities=16% Similarity=0.083 Sum_probs=214.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252 8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL 87 (285)
Q Consensus 8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 87 (285)
..+.++|++++-+.+.++.+..+++.+...+...++ +.+..|++++...|..+.....++...+++.+.+.+.++
T Consensus 191 ~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G-- 265 (518)
T COG0728 191 LLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG-- 265 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 457899999999999999999998765322222222 237889999999999999999999999999999999855
Q ss_pred hhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Q 023252 88 EASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS--- 163 (285)
Q Consensus 88 ~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--- 163 (285)
+++.++.++++.+++. .+..++++...|..|++..++|.++.++..+++++++++.++|.++.+.++++++.+++.
T Consensus 266 sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG 345 (518)
T COG0728 266 SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERG 345 (518)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999998 677899999999999999999999999999999999999999999999999999988874
Q ss_pred -CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252 164 -SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG 242 (285)
Q Consensus 164 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~ 242 (285)
-++++.....+.+..++.+.++....-+....+.+.+|+|.|+.+.+.+ .++++.+++.+... ++..|+..+..++
T Consensus 346 ~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l~~~--~~~~giala~s~a 422 (518)
T COG0728 346 AFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLLIPP--LGHVGLALATSLA 422 (518)
T ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHHHhh--ccchHHHHHHHHH
Confidence 2577778899999999999999999999999999999999999999999 88999999766555 7888899999999
Q ss_pred HHHHHHHHHHHHHhc
Q 023252 243 SFVQAALLALKIVFT 257 (285)
Q Consensus 243 ~~~~~~~~~~~~~~~ 257 (285)
.++++.+.++..+|+
T Consensus 423 ~~~~~~ll~~~l~k~ 437 (518)
T COG0728 423 AWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHHh
Confidence 989888877776654
No 22
>PRK10459 colanic acid exporter; Provisional
Probab=99.75 E-value=9.3e-16 Score=139.38 Aligned_cols=239 Identities=10% Similarity=0.102 Sum_probs=193.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLP 83 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g 83 (285)
.+.|+.+..++++++..+..+...+...+ +.+++. +.+++..|++++.+.|....++...+...+|..+++++-
T Consensus 165 ~~~g~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~l 238 (492)
T PRK10459 165 FWPGALAAILGYLVNSSVRTLLFGYFGRK--IYRPAL----HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRIL 238 (492)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHHHhcc--cCCccc----eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhh
Confidence 56788899999999988876654333222 112111 123567899999999999999999999999998877764
Q ss_pred CccchhhHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 023252 84 NPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYAL 162 (285)
Q Consensus 84 ~~~~~~aa~~~~~~i~~~~~~-~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf 162 (285)
. +.+++.|+.+.++.+++.. +...+++...|..++. ++|.++.++..++...+....++|..+.+.++++++..++
T Consensus 239 g-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll 315 (492)
T PRK10459 239 G-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLV 315 (492)
T ss_pred c-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3 5689999999999887654 4556788889999886 5789999999999999999999999999999999998877
Q ss_pred cCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252 163 SSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG 242 (285)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~ 242 (285)
.+++ .+.+...++++++..++..+.......+++.||++.++..++.. .++.+|..+.+... +|..|+.+++.++
T Consensus 316 ~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~--~G~~g~a~a~~i~ 390 (492)
T PRK10459 316 FGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL--AGLIGVALGFLLV 390 (492)
T ss_pred cChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh--ccHHHHHHHHHHH
Confidence 6644 24577899999999999999999999999999999999999887 67778877666543 7999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023252 243 SFVQAALLALKIVF 256 (285)
Q Consensus 243 ~~~~~~~~~~~~~~ 256 (285)
+.+......+...|
T Consensus 391 ~~~~~~~~~~~~~~ 404 (492)
T PRK10459 391 QIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877776633
No 23
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.71 E-value=6.1e-15 Score=133.63 Aligned_cols=224 Identities=17% Similarity=0.167 Sum_probs=188.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252 8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL 87 (285)
Q Consensus 8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~ 87 (285)
..++.++..++..........+..++++...+ ... +..++..|+.++.+.|..+..+...+...+|+.+++++-. +.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~ 247 (480)
T COG2244 171 LGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PA 247 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hh
Confidence 45677777778777777766666422221111 111 1258899999999999999999999999999988887643 56
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchH
Q 023252 88 EASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSEN 167 (285)
Q Consensus 88 ~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~ 167 (285)
+++.|+.+.++......+..+++.+..|..++...++|.++.++..+++.++....+++..+.+.++++++..++.+++.
T Consensus 248 ~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~ 327 (480)
T COG2244 248 QVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY 327 (480)
T ss_pred HheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998888876544
Q ss_pred HHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHH
Q 023252 168 IVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGL 239 (285)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~ 239 (285)
. .+...+.+.++..++..+.......+++.|+++..++.+..+ .+.++.++++++.. +|..|+..+.
T Consensus 328 ~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 328 A--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred c--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 2 177889999999999999999999999999999999999998 68888888887765 6788888877
No 24
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.70 E-value=2.4e-15 Score=134.21 Aligned_cols=206 Identities=16% Similarity=0.160 Sum_probs=192.3
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHH-HHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252 48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYL-HYFIPYGFGSTVSTRVSNELGAGNP 126 (285)
Q Consensus 48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~-~~~~~~~~~~a~~~~vs~~~G~~~~ 126 (285)
..+.|++++++.|..+..........+++.+.+|+| +.++++.++++...+. .+.+..|+..+..++.+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 788999999999999999999999999999999999 5699999999888776 4578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252 127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 206 (285)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 206 (285)
+......+++.......+++.+.+ +.+.+++...+++|+++...+..|.++..+..+...........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999999999775 6678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 207 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 207 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
++..+. .++++++++++.+.+++|..|+..+..++++........++...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 999998 88999999999999999999999999999999988877666554
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.65 E-value=1.9e-14 Score=130.60 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=161.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHHHHH
Q 023252 55 IRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAAKMA 132 (285)
Q Consensus 55 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~~~~ 132 (285)
+|-+.|..+++........+++.++++ +| +++.++++.+.++..+...+. .|++++....+|+..|++|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 466889999999999999999988887 58 568999999999988887765 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252 133 VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA 212 (285)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 212 (285)
.+.+..+.++.+++..++++++++++...+.+|++. ..++++..+..++..+.....+.+|+.+|.+..+..++.+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999998877666653 3467888899999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHH-----HhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 213 YYLVGIPIAAVLAF-----VFQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 213 ~~~~~i~~~~~l~~-----~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
.++++.....+.. ..+++..|..+++.++..+..+...+.++|+
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 -QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred -HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544333322 1234567777888888888888765555443
No 26
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.54 E-value=2e-12 Score=117.83 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=152.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCccchh-hHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHH
Q 023252 54 FIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEA-SVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAA 129 (285)
Q Consensus 54 il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~ 129 (285)
.+|-+.-..+.++.......++..++++ +| +++. ++++.+.++.++...+. .|++++..+...++.+++ |++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 3566666777888888888899999888 89 4577 79999999987776554 367777777766654333 688
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhcccccccc--cCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252 130 KMAVCAIIILAAAEMV-TVSIVLLFCRHILGYAL--SSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA 206 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 206 (285)
++....++......+. +..++.+++++++..++ +.|++..+.+..|++++.++.++..+..+..+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 8777776666664444 45677888999999988 44677778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhh--HHHHHHHHHHHHHHHHHHHh
Q 023252 207 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLL--IGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 207 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~ 256 (285)
+.++.. .++.+... +....++|..|+. +++.++..+..+...+..+|
T Consensus 158 ~~~i~~-~i~~i~~~--~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 158 FSPILF-NIGVILSL--LFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHH-HHHHHHHH--HHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 34444432 2334568899988 99999999888877665554
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.48 E-value=2.8e-12 Score=114.17 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=147.9
Q ss_pred HHHHhhHHHHHHHHHH-HHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHH
Q 023252 55 IRFSVPSAVMVCFEWW-SYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMA 132 (285)
Q Consensus 55 l~~~~p~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~ 132 (285)
.|.+............ .+.........+| +++.+..+...++..+...+ ..|++++....++++ ++|++++++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 3444444455555553 3334456677778 55888888888888777665 678888888899988 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252 133 VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA 212 (285)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 212 (285)
.+.++.+....+++.+++.+++.+++...+..|++. ..++.+..+..++..+.....+.+|+.||++.++..++.+
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888776652 3566677776777788889999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 213 YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 213 ~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.++++.+ +++.... .|..|+.+++.+++.+..+...+.+.|
T Consensus 156 -~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 156 -SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred -HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777665 4433332 399999999999999988766555544
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.25 E-value=1.1e-09 Score=98.42 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=146.8
Q ss_pred hcCCCccchhhHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023252 80 GLLPNPKLEASVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHI 157 (285)
Q Consensus 80 ~~~g~~~~~~aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
..+|. ..+.++|.++.++..++.... .++.++..|..++.. ++|.++.++..+..+.+..+.+++++++.++++++
T Consensus 3 ~~fG~-s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~ 80 (451)
T PF03023_consen 3 YFFGA-SAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPP 80 (451)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665 456789999999999998543 468999999999999 99999999999999999999999999999999999
Q ss_pred cccccc--CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCC---c
Q 023252 158 LGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLK---G 232 (285)
Q Consensus 158 i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---~ 232 (285)
+.+++. .|++..+.+.+.++++.+..++.++..++.+++|+.+|...+....+.. .+..+...+++.. .+| .
T Consensus 81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~-N~~~I~~~~~~~~--~~~~~~i 157 (451)
T PF03023_consen 81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLF-NLSIILSLLLLSN--SWGQENI 157 (451)
T ss_pred HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH-HHHHHHHHHHHHH--hcCchHH
Confidence 999985 4788899999999999999999999999999999999999999988876 3333333333333 355 7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252 233 KGLLIGLATGSFVQAALLALKIVFTD 258 (285)
Q Consensus 233 ~g~~~a~~~~~~~~~~~~~~~~~~~~ 258 (285)
.++.+|+.++..+..+......+|..
T Consensus 158 ~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 158 YALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999888777776643
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.94 E-value=3.8e-07 Score=81.87 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=153.0
Q ss_pred HHHHhhHHHHHHHHH-HHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHHHH
Q 023252 55 IRFSVPSAVMVCFEW-WSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAAKM 131 (285)
Q Consensus 55 l~~~~p~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~~~ 131 (285)
+|.+.-..+.++..- .++.=++.+...+|.+ ...++++++.++.+++.-+. .+++++..|...++..+++.+++++
T Consensus 10 lks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~ 88 (518)
T COG0728 10 LKSLIIVSSATLLSRILGFVRDVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARF 88 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHH
Confidence 344444444444444 4444578888999963 56789999999999997543 4588999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-ccccC--chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHH
Q 023252 132 AVCAIIILAAAEMVTVSIVLLFCRHILG-YALSS--SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFV 208 (285)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 208 (285)
..+...-......+.++++..++++++. .++.+ |++....+....+++.+..++.++.....+++++.++-..+.+.
T Consensus 89 f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~a 168 (518)
T COG0728 89 FSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFA 168 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhh
Confidence 8888887888888888899999999998 55544 34544468888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 209 NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 209 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
-+.- .+..|.....+....+....+..++..++-++..+......+|.
T Consensus 169 Pvl~-Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 169 PVLL-NVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred HHHH-HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7765 33333233333333332466788889999999888887777764
No 30
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.61 E-value=5.5e-06 Score=75.67 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=158.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCCccchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCCh
Q 023252 50 SIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL--LPNPKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNP 126 (285)
Q Consensus 50 ~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~ 126 (285)
.-++++++....+.+.+.-.+.+--+-.++.. +.+ .++.+.|++++++.++.- .+...+-.+.-...++...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS 329 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence 35789999999999999988888888877777 554 467899999999988774 67778999999998888765533
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHh
Q 023252 127 ---------KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVAR 197 (285)
Q Consensus 127 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 197 (285)
+++.+.....+++...+++++..+-...++.+++++.++.=....+...+++++...|+.++|.+..++.+
T Consensus 330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence 45777788888888888888877777788888888754322222357789999999999999999999999
Q ss_pred ccCcchhhHHHHHHH--HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 198 GSGWQKIGAFVNLGA--YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 198 ~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
+..+.+.....+-.- ..++.+..+|++... ++|..|..+|..+...++.+....++++
T Consensus 410 s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 410 SVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876654443221 134455667777766 7999999999999999998877766654
No 31
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.47 E-value=5.1e-05 Score=63.09 Aligned_cols=186 Identities=17% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHhhHHHHHHHHHHHHHHH-HHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHHH
Q 023252 56 RFSVPSAVMVCFEWWSYEVL-ILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAV 133 (285)
Q Consensus 56 ~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~~ 133 (285)
|-+.-....+........+. ......+| +++.+.++....+..+...+ ..|+.++..-..+++..+ .++.+...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 33344444444454444444 45555667 66889999999998888765 678999988888887643 44455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHH
Q 023252 134 CAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAY 213 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 213 (285)
........+.+++......... .+.. ++.. ..+........++.........++|+.++.+.....++..
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS- 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5555555544444444333323 3333 3321 1222222222257788888999999999999999988887
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 214 YLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 214 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.+..+.....+.. .+.+..+..++..++..+..+...+..+|
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 23348888888888888887777666654
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.37 E-value=0.00013 Score=60.05 Aligned_cols=164 Identities=14% Similarity=0.261 Sum_probs=109.8
Q ss_pred HHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 72 YEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIV 150 (285)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
+.....+...+| +++.+.|+....+..+...+ ..|+.+.... ..++|+++.++..+.......+.+++..++
T Consensus 5 f~~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 5 FLFLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677 56889999988888887765 4555555444 334677778887777776666665555444
Q ss_pred HHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023252 151 LLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQL 230 (285)
Q Consensus 151 ~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 230 (285)
...... ++ .+++ ...++.+..+..++..........+++.+|.+.....++.. .+..+.....+ ...+.
T Consensus 78 ~~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 146 (251)
T PF13440_consen 78 AILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVR-SLLRLLLLVLL-LYLGL 146 (251)
T ss_pred HHHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHh
Confidence 332322 33 3343 23456677778888899999999999999999999999887 33333232222 33334
Q ss_pred CcchhhHHHHHHHHHHHHHHHHH
Q 023252 231 KGKGLLIGLATGSFVQAALLALK 253 (285)
Q Consensus 231 g~~g~~~a~~~~~~~~~~~~~~~ 253 (285)
+..+..++..++..+..+.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~ 169 (251)
T PF13440_consen 147 NLWSILLAFIISALLALLISFYL 169 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999888888877665443
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=98.32 E-value=6.4e-05 Score=68.56 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=122.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH-HHHhcCCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHH
Q 023252 52 KEFIRFSVPSAVMVCFEWWSYEVLI-LLSGLLPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAA 129 (285)
Q Consensus 52 ~~il~~~~p~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~ 129 (285)
++..+-+....+.+........+.. .+...+| +++.+.++.+..+..+...+. .|++++.. +. .+++.
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~--- 74 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH--- 74 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH---
Confidence 3455656666666666665555544 4455667 558888999888888777544 57776552 21 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHH
Q 023252 130 KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVN 209 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 209 (285)
+.......+....+++..++++++++++..++++ ++. ...+++.++..++.++.....+.+|+.+|.+.....+
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 75 -LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 3344455566666777777777888888776654 442 3567778888888888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHH
Q 023252 210 LGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLA 251 (285)
Q Consensus 210 ~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~ 251 (285)
... .+........+. ..++|..+..++..++..+..+...
T Consensus 149 ~~~-~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 149 ISA-VVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred HHH-HHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 776 344444443333 4567888888888888887766543
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.31 E-value=0.00024 Score=59.25 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCC
Q 023252 46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNP-KLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 124 (285)
Q Consensus 46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~ 124 (285)
+....++++++.-+|..+++....++-.+.+..+++-.++ .+.+|+|+++..+.-++..+...+-+....++.+.
T Consensus 5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~---- 80 (345)
T PF07260_consen 5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK---- 80 (345)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch----
Confidence 4466788999999999999999999988888888774433 35599999999999999999888887776666542
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhccc-ccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCc
Q 023252 125 NPKAAKMAVCAIIILAAAEM-VT-VSIVLLFCRHI-LGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGW 201 (285)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 201 (285)
.+ ++....++..+..+. +. ..+..-.+.+. +-.+++-|+++.+.+...+.++.+..+++++.....|++-=..+
T Consensus 81 -rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 81 -RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred -hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 22 222222222221111 11 11112222222 34556779999999999999999999999999999988886677
Q ss_pred chhhHHHHHHH
Q 023252 202 QKIGAFVNLGA 212 (285)
Q Consensus 202 ~~~~~~~~~~~ 212 (285)
+......++..
T Consensus 158 s~iV~~aSI~~ 168 (345)
T PF07260_consen 158 SWIVGSASIAD 168 (345)
T ss_pred eeEeehHHHHH
Confidence 77766666654
No 35
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.28 E-value=7.8e-06 Score=61.69 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=72.6
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHH
Q 023252 175 MVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKI 254 (285)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~ 254 (285)
++++.++..++.++......++++.||++..+..++.+ .++++++++.+.+. +|..|+.+++.+++.+......+..
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999998 88999999998544 8999999999999999999888887
Q ss_pred Hhc
Q 023252 255 VFT 257 (285)
Q Consensus 255 ~~~ 257 (285)
+|.
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 764
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=8.7e-05 Score=64.56 Aligned_cols=203 Identities=10% Similarity=-0.020 Sum_probs=139.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHH
Q 023252 51 IKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPN-PKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKA 128 (285)
Q Consensus 51 ~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~ 128 (285)
-++..+.......+.+.-++.+--+-.+++...- .-.+.|.|.++++..++.. .+.-.+-...-...++...+++.|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3456666666666666666655544444432210 0125677888888877665 6677888888888888887777776
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252 129 AKMA---VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 205 (285)
Q Consensus 129 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 205 (285)
.|+. ....+++...+++...++-...++.+..+++++.=....+...++++++..++.++|.+..+++.+.++.+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 6664 5566666777777666666677777777776533222235578999999999999999999999999887765
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 206 AFV---NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 206 ~~~---~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
-.. .+.. -++.+..+|++... +|..|...|..+...++.+....++++
T Consensus 398 ~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 398 DKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 2322 34566788998888 667999999888877776655444443
No 37
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.12 E-value=3.4e-05 Score=64.15 Aligned_cols=108 Identities=18% Similarity=0.293 Sum_probs=89.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 023252 7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPK 86 (285)
Q Consensus 7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (285)
++.+..++..++..+..++..++.+++.+ .+....+++..|++++.+.|..+..+...+....|..+++++.+ +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~ 238 (273)
T PF01943_consen 165 SLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-P 238 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-H
Confidence 36778888888888888777777654322 11222348889999999999999999999999999988888764 6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhh
Q 023252 87 LEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120 (285)
Q Consensus 87 ~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~ 120 (285)
++++.|+++.++......+..++.++..|..++.
T Consensus 239 ~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 239 EAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999875
No 38
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.88 E-value=0.0028 Score=57.63 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=124.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH-HHHHHhcCCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHH
Q 023252 52 KEFIRFSVPSAVMVCFEWWSYEV-LILLSGLLPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAA 129 (285)
Q Consensus 52 ~~il~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~ 129 (285)
++..|-+......++.......+ .......+| +++.+.++.+..+..++..+. .|+..+..-.++++..++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg--~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLG--PEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhC--cccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 44455555555555555544444 456667777 558888999999999888776 89999999999999988888888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHH
Q 023252 130 KMA-VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFV 208 (285)
Q Consensus 130 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 208 (285)
+.. ....+......+.+.........+. +++ ....+.+.....+.........+.+|+.++.+.....
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 887 7777777777766665555544443 333 4456788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHH
Q 023252 209 NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALK 253 (285)
Q Consensus 209 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~ 253 (285)
.+ .. ...+...+.+.. .......++...+..+........
T Consensus 153 ~~-~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 153 IV-SS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred HH-HH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44 42 222233333322 234444555555555544444333
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.46 E-value=0.0022 Score=52.64 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=78.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCc
Q 023252 7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNP 85 (285)
Q Consensus 7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~ 85 (285)
++.+..++..++.++..++...+.+ ++.+.. + +.+..| .++.+.|..+..+........+..+++. +|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~-- 215 (251)
T PF13440_consen 147 NLWSILLAFIISALLALLISFYLLR--RKLRLS-F-----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG-- 215 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--cccCCC-c-----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 5667777777887777666555322 111111 1 122234 7999999999999999999999999888 76
Q ss_pred cchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhh
Q 023252 86 KLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNE 120 (285)
Q Consensus 86 ~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~ 120 (285)
.++++.|+++.++...+. .+..++++...|..|+.
T Consensus 216 ~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 216 PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 679999999999999888 89999999999998863
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=92.07 E-value=1.8 Score=32.06 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.4
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 023252 3 KIKLGSNGAALAVGLSYWFNVLLLGFYIKY 32 (285)
Q Consensus 3 ~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~ 32 (285)
.+.+|..|+++|+.+++.+..+...++.+|
T Consensus 50 i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 50 IPRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998888887764
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=89.47 E-value=14 Score=32.41 Aligned_cols=136 Identities=20% Similarity=0.224 Sum_probs=99.4
Q ss_pred HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHH
Q 023252 104 FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSI 183 (285)
Q Consensus 104 ~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~ 183 (285)
.+..|+.....-.+|..+=+||++++.....-.+.+.+..+..++.++++..+ +.+. .|-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~~--------~~si-----~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNN--------QYSI-----VYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhcC--------chhH-----HHHHHHHHHH
Confidence 45678899999999999999999999999998888888888877754332222 2221 2233344445
Q ss_pred HhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252 184 IMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 184 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
...+..-.....+.++.|-+...+.-..+ ..+.+.+++++-. .+..|.-++..++..+...+....+.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55666667788899999999999888888 6666776666544 589999999999987777665544443
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=88.04 E-value=8.3 Score=32.91 Aligned_cols=102 Identities=12% Similarity=0.231 Sum_probs=62.9
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCc---cchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhh
Q 023252 46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNP---KLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNEL 121 (285)
Q Consensus 46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~ 121 (285)
.+...++++++..+|.++....+..+..+.+.++++ +|.. +++++...+..+...+ ++|..+=.-..--...
T Consensus 229 ~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~----~y~w~~~~r~~~paf~ 304 (345)
T PF07260_consen 229 GDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHM----PYGWLTELRAVYPAFD 304 (345)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcC----cchhHHhHHhhCchhh
Confidence 346678999999999999999999999999999988 6643 2345544444444433 3344443333333333
Q ss_pred cCCChHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 023252 122 GAGNPKAAKM--------AVCAIIILAAAEMVTVSIVL 151 (285)
Q Consensus 122 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 151 (285)
-.++.++.++ ..++....+.++++.....+
T Consensus 305 ~~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 305 KNNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred ccCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332 56666666666666655544
No 43
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=82.63 E-value=9.1 Score=25.58 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 023252 107 YGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVT 146 (285)
Q Consensus 107 ~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 146 (285)
.-++.-.+..+-..+.+||++++++..+++..++.+-.++
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3345555667778888999999999999998888655444
No 44
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=77.59 E-value=54 Score=29.51 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHHhccCcch
Q 023252 180 CLSIIMDSLQAVLSGVARGSGWQK 203 (285)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~g~~~ 203 (285)
..+.+...+-..+++++||+|-+-
T Consensus 114 s~s~~~~~~l~~lng~fQg~Gwpp 137 (448)
T COG2271 114 SPSLFLFAVLWVLNGWFQGMGWPP 137 (448)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcH
Confidence 335566667777899999998654
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=69.38 E-value=82 Score=27.90 Aligned_cols=45 Identities=16% Similarity=0.047 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHH
Q 023252 124 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENI 168 (285)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~ 168 (285)
++.++.....++.+.-..-.-...++.++++++.+..+|+-++..
T Consensus 317 ~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~ 361 (467)
T COG4267 317 NNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY 361 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 444556667777777777777888999999999999999877653
No 46
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=55.31 E-value=1.3e+02 Score=25.54 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=8.4
Q ss_pred hhhhHHHHHhhhhcCC
Q 023252 109 FGSTVSTRVSNELGAG 124 (285)
Q Consensus 109 ~~~a~~~~vs~~~G~~ 124 (285)
++.-.....++.+|+|
T Consensus 45 ~~~~~~g~l~dr~g~r 60 (379)
T TIGR00881 45 ISKFVMGSVSDRSNPR 60 (379)
T ss_pred hhhhhhhHHHHhhCCe
Confidence 3334444566666654
No 47
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=53.05 E-value=1.6e+02 Score=25.72 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccc--hhcccCCCHHHHHhHHHHHHHHhhHHHHH
Q 023252 14 AVGLSYWFNVLLLGFYIKYSSEC--EKTRASFSIDVFSSIKEFIRFSVPSAVMV 65 (285)
Q Consensus 14 at~ia~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~il~~~~p~~~~~ 65 (285)
+...++++-+++......++.++ ++..+..++..+...++.+|.++|.++-.
T Consensus 50 ~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYa 103 (345)
T KOG2234|consen 50 AVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYA 103 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHH
Confidence 44566666666655444444322 33344455666778889999999998744
No 48
>PRK01637 hypothetical protein; Reviewed
Probab=51.64 E-value=1.5e+02 Score=25.03 Aligned_cols=14 Identities=0% Similarity=0.090 Sum_probs=6.2
Q ss_pred hHHHHHhhhhcCCC
Q 023252 112 TVSTRVSNELGAGN 125 (285)
Q Consensus 112 a~~~~vs~~~G~~~ 125 (285)
+...-..+.++.++
T Consensus 111 ~l~~a~N~i~~~~~ 124 (286)
T PRK01637 111 SIDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHHhCCCC
Confidence 33334444555444
No 49
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=51.34 E-value=1.1e+02 Score=28.11 Aligned_cols=84 Identities=15% Similarity=0.060 Sum_probs=42.9
Q ss_pred HHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 023252 169 VHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAA 248 (285)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~ 248 (285)
.......+.+.....|+.....+- -.++..+......+...+..+.....+. ..|-.+.-.++..+...
T Consensus 179 s~~v~~~l~~~~~~iP~~lv~~~d--~~kgi~e~~p~~lvag~sfti~q~l~a~---------~lGPelPdIig~lvsl~ 247 (522)
T COG1620 179 SAMVGRQLPILSLLIPFLLVFLMD--GWKGIKEVWPAILVAGLSFTIPQFLLAN---------FLGPELPDIIGGLVSLG 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHH---------hcccccHHHHHHHHHHH
Confidence 333444455555555554443333 5677777777666666553332222222 22444455666666666
Q ss_pred HHHHHHHhcCHHHHHHH
Q 023252 249 LLALKIVFTDWGKQASK 265 (285)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ 265 (285)
....+.++ |+.|...
T Consensus 248 i~~~flk~--~~PK~~~ 262 (522)
T COG1620 248 ILALFLKK--WQPKRIW 262 (522)
T ss_pred HHHHHHHh--hCCchhh
Confidence 65555555 6655443
No 50
>PRK10739 putative antibiotic transporter; Provisional
Probab=47.84 E-value=1.2e+02 Score=24.15 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhH
Q 023252 114 STRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177 (285)
Q Consensus 114 ~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~ 177 (285)
.|..-..-...++++-++..++....+++.. +++.++.+.+.++|+-+-+..+.+...+.
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~il----l~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLVM----LVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444555677777777777666665443 45677899999999977666565555443
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=47.09 E-value=2.1e+02 Score=25.40 Aligned_cols=37 Identities=5% Similarity=-0.043 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252 124 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY 160 (285)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (285)
.+.++.++..+++...+.+...+..++.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557799999999999999999888877777777765
No 52
>PRK09546 zntB zinc transporter; Reviewed
Probab=46.26 E-value=68 Score=27.59 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCc---------chhhHHHHHHHHHHHHHHHHHHHhcCH
Q 023252 216 VGIPIAAVLAFVFQLKG---------KGLLIGLATGSFVQAALLALKIVFTDW 259 (285)
Q Consensus 216 ~~i~~~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (285)
+.+|++++-+.+ +++. .|.++...+ ..+.++..+++++|++|
T Consensus 273 IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 456777765542 3332 233333333 33444445567777776
No 53
>PF14184 YrvL: Regulatory protein YrvL
Probab=45.77 E-value=1.2e+02 Score=22.34 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccC-chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252 134 CAIIILAAAEMVTVSIVLLFCRHILGYALSS-SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA 212 (285)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 212 (285)
......++....+.+. .++....+.++++- -++......-.+....++.++..+.-.....+.-.+-++.......
T Consensus 5 ~~~i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~l~-- 81 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAI-YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFILLA-- 81 (132)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHH--
Confidence 3344444555554444 44455567788874 4666667777778888888888888887666665533333333222
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 023252 213 YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALL 250 (285)
Q Consensus 213 ~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~ 250 (285)
..+.....+...+.-+.=+++++..+.....+..+..
T Consensus 82 -~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~~ 118 (132)
T PF14184_consen 82 -FIIDFLFTWITIYTADELMESISISTLSEIIFALLFA 118 (132)
T ss_pred -HHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHHH
Confidence 3455666676666666667888888776655554443
No 54
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=44.72 E-value=1.2e+02 Score=21.88 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHH
Q 023252 130 KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVN 209 (285)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 209 (285)
|+..|..+.++.+..+..++...+.++......+..+.......+.+|.+.-.+...+.... -...-..+.+......
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l--~~~~~~~~~~~al~~l 78 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLL--WAAFKPEYRRPALRLL 78 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHH--HHHccHhHHHHHHHHH
Confidence 35667778888888888888888888888887764221112344555554433333333333 2223333433333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 023252 210 LGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIV 255 (285)
Q Consensus 210 ~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 255 (285)
... .....+.=+.....+-......+...+.+.+......+..+
T Consensus 79 ~~~--~~~~~lgRlis~~~dG~p~~~~~~~l~~Elv~~~l~~~~l~ 122 (124)
T PF14248_consen 79 ALF--IGGGGLGRLISLALDGPPSPFLWVALIFELVLAPLLLWWLR 122 (124)
T ss_pred HHH--HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 222 11222222222222223333344444556666665555444
No 55
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=43.95 E-value=1.2e+02 Score=23.39 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 023252 214 YLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIV 255 (285)
Q Consensus 214 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 255 (285)
.++.+...|++-..+++++..-++-..+..++++.+....++
T Consensus 26 ~ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYk 67 (170)
T PF07074_consen 26 LIVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYK 67 (170)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 344555567776777888887777777777776666554444
No 56
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.45 E-value=2.6e+02 Score=25.58 Aligned_cols=143 Identities=13% Similarity=-0.042 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcC---CChHHHHHHHHHH
Q 023252 60 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGA---GNPKAAKMAVCAI 136 (285)
Q Consensus 60 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~---~~~~~~~~~~~~~ 136 (285)
.+..+-+...+.+.+++..+.++++ +.++..++=.. +...-..-++-=..-..-...|. .+..+..+..+.+
T Consensus 17 ~i~~Q~~~RiiTF~lN~~liR~~s~--~v~gi~nvrl~---lL~sTiLFlsREair~A~l~~gs~~~d~~te~~n~~wlS 91 (530)
T KOG2864|consen 17 SIRGQLLARIITFALNALLIRFLSP--EVLGIVNVRLE---LLQSTILFLSREAIRLAELRIGSEPADTWTEFINLLWLS 91 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCh--hheehhHHHHH---HHHHHHHHhhHHHHHHHhccCCCCCCccHHHHHHhhhhh
Confidence 3444555666777778888999984 46654444222 22222222222222333333333 3466888889999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252 137 IILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA 212 (285)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 212 (285)
..+..++++++.-+.+-+....-..- ..+.....+.++..+.+..-....+.-+.|..-+.+.-....-+.
T Consensus 92 ~~L~~~i~~~~i~~wl~~~~s~d~i~-----~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~ 162 (530)
T KOG2864|consen 92 VPLQTAINVACIYFWLGFLSSSDEIS-----YSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLA 162 (530)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchhh-----cCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHH
Confidence 99888888877665544433221111 222334445555555555555555555666665555555555554
No 57
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=42.90 E-value=18 Score=24.22 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHH
Q 023252 229 QLKGKGLLIGLATGSFVQAALLALKIV 255 (285)
Q Consensus 229 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 255 (285)
++...|+||..++..++..+++.....
T Consensus 29 ~~~~Lgm~~lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFVCC 55 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 455667788888777776665544433
No 58
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=40.40 E-value=36 Score=27.45 Aligned_cols=48 Identities=6% Similarity=0.002 Sum_probs=29.7
Q ss_pred HHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 102 HYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSI 149 (285)
Q Consensus 102 ~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (285)
......++|.++++++++.+|+++....++-...+....++.++++..
T Consensus 118 ~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~ 165 (216)
T COG0170 118 AGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLL 165 (216)
T ss_pred HHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHH
Confidence 345678999999999999999863333333333444444444444433
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.38 E-value=38 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=9.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHh
Q 023252 233 KGLLIGLATGSFVQAALLALKIVF 256 (285)
Q Consensus 233 ~g~~~a~~~~~~~~~~~~~~~~~~ 256 (285)
.|+.++...+-+...++..+.++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333344443
No 60
>COG2056 Predicted permease [General function prediction only]
Probab=38.95 E-value=2.3e+02 Score=25.05 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHH-H--------HHHHhhcccccccccC
Q 023252 107 YGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTV-S--------IVLLFCRHILGYALSS 164 (285)
Q Consensus 107 ~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~i~~lf~~ 164 (285)
.|+.....-.+....+.++.++- +..++.+.+..+..+.+ + ++.-..-+|++++|++
T Consensus 74 sGltd~l~~kvi~~i~~~~~~~~-~~~~K~~l~~~i~~~a~~SQNliPVHIAFIPilIPPLL~lfn~ 139 (444)
T COG2056 74 SGLTDVLAKKVIRLLGGDESRRG-KTLKKYLLLLIILLIACFSQNLIPVHIAFIPILIPPLLSLFNK 139 (444)
T ss_pred cChHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHHHHHhcCCccceeeeeehhhhhHHHHHHHH
Confidence 46667777778888876444444 44444433333332222 1 2233455667777765
No 61
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=37.53 E-value=2e+02 Score=22.87 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhh
Q 023252 115 TRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMV 176 (285)
Q Consensus 115 ~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l 176 (285)
|..-..-+..+.++-++..++....+++. .+.+.++.+.+.++|+-+-+..+.+...+
T Consensus 22 p~f~~lt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fgIsl~af~IaGGii 79 (203)
T PF01914_consen 22 PIFLSLTKGMSPKERRRIARRASIIAFII----LLIFAFFGQLILNFFGISLPAFRIAGGII 79 (203)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444444566666677777666655554 34557789999999987766555555443
No 62
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=36.98 E-value=3.1e+02 Score=24.63 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHH
Q 023252 62 AVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAA 141 (285)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~ 141 (285)
.+.+....+.+.....++.++-+.-.+-+.|++...+.++...+...++. ...+.+|-.+.+ .......+.++.
T Consensus 326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~----~l~~~~~vt~~~--f~~l~~lili~~ 399 (433)
T PF03092_consen 326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGA----FLMELFGVTRDD--FSNLWLLILICS 399 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCccc--ccchHHHHHHHH
Confidence 44566666666666677777765556667788888888777765555544 455555533322 333333444444
Q ss_pred HHH
Q 023252 142 AEM 144 (285)
Q Consensus 142 ~~~ 144 (285)
+..
T Consensus 400 ~~~ 402 (433)
T PF03092_consen 400 VIQ 402 (433)
T ss_pred HHH
Confidence 443
No 63
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=36.00 E-value=2.3e+02 Score=24.73 Aligned_cols=7 Identities=0% Similarity=-0.040 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 023252 141 AAEMVTV 147 (285)
Q Consensus 141 ~~~~~~~ 147 (285)
+-+.+|+
T Consensus 38 ~~~~lP~ 44 (385)
T PF03547_consen 38 FNVFLPA 44 (385)
T ss_pred HHHHHHH
Confidence 3344444
No 64
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=35.75 E-value=3.5e+02 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhcccccccccCch
Q 023252 142 AEMVTVSIVLLFCRHILGYALSSSE 166 (285)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~lf~~~~ 166 (285)
+..+++++++++..+.+-++..+||
T Consensus 463 ~~~~~~~v~~~~~~~~~~~~~~~~~ 487 (489)
T PRK10207 463 LVTLGVAVVMALMVPWLNRMINTPE 487 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444455555555666666655544
No 65
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=35.44 E-value=2.7e+02 Score=23.36 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH---HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHH
Q 023252 92 FSLCFTITYLHY---FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAI 136 (285)
Q Consensus 92 ~~~~~~i~~~~~---~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~ 136 (285)
.+++-++..+.. .+...+........=++..++|+++.++....+
T Consensus 96 ialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~ 143 (265)
T TIGR00822 96 IALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTA 143 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHH
Confidence 345555444333 334445555666677777889999887765443
No 66
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=34.93 E-value=2.3e+02 Score=22.55 Aligned_cols=60 Identities=5% Similarity=-0.097 Sum_probs=37.7
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhH
Q 023252 114 STRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177 (285)
Q Consensus 114 ~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~ 177 (285)
.|.....-+..+.++-++..++....++... +.+.++.+.+.++|+-+-+....+...+.
T Consensus 24 ipvfl~lt~~~~~~~r~~ia~~~~l~a~~il----l~f~~~G~~iL~~fgIsl~afrIaGGiiL 83 (201)
T TIGR00427 24 IPIFISLTEYYTAAERNKIAKKANISSFIIL----LIFLVFGDTILKLFGISIDAFRIAGGILL 83 (201)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444555666666777766655555443 45677889999999977665555554443
No 67
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.04 E-value=80 Score=21.05 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=5.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhc
Q 023252 252 LKIVFTDWGKQASKARERIFE 272 (285)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (285)
..++|.+..++..+.-+++.+
T Consensus 28 ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 28 IEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp -----------CHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHc
Confidence 344455555555555555544
No 68
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=33.76 E-value=3.4e+02 Score=24.08 Aligned_cols=19 Identities=0% Similarity=-0.130 Sum_probs=8.9
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 023252 125 NPKAAKMAVCAIIILAAAE 143 (285)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (285)
|.++..+..++.+..-++-
T Consensus 73 Dlr~i~~~g~~~l~~F~~~ 91 (378)
T PF05684_consen 73 DLRRILRLGGRLLLAFLIG 91 (378)
T ss_pred cHHHHHHhhHHHHHHHHHH
Confidence 4455555555444433333
No 69
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=29.51 E-value=4.6e+02 Score=24.30 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHhhHHHHHHHHhhhHHHH-HHHHHhccCcchhhHHHHHHH--HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 023252 171 RLADMVPFICLSIIMDSLQAV-LSGVARGSGWQKIGAFVNLGA--YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQA 247 (285)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~ 247 (285)
.......++.+.....++.+- ..+-++..+|.-..+.-.+-+ .+++-...+.-+...+++.-.|..+|.--++++..
T Consensus 295 f~~gIIpiI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~ 374 (502)
T PF03806_consen 295 FMKGIIPIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKS 374 (502)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 344555555555555444444 356666666666555554433 12232333344445677777777777777766654
Q ss_pred H
Q 023252 248 A 248 (285)
Q Consensus 248 ~ 248 (285)
.
T Consensus 375 ~ 375 (502)
T PF03806_consen 375 L 375 (502)
T ss_pred c
Confidence 4
No 70
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=26.90 E-value=1.7e+02 Score=20.13 Aligned_cols=9 Identities=11% Similarity=-0.101 Sum_probs=3.6
Q ss_pred HHHHhcCHH
Q 023252 252 LKIVFTDWG 260 (285)
Q Consensus 252 ~~~~~~~~~ 260 (285)
-.++..+..
T Consensus 35 ~~IW~~~r~ 43 (121)
T PF10669_consen 35 KSIWHDSRQ 43 (121)
T ss_pred HHHhhhHHH
Confidence 344443333
No 71
>PRK11111 hypothetical protein; Provisional
Probab=25.78 E-value=3.6e+02 Score=21.75 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=33.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhH
Q 023252 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177 (285)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~ 177 (285)
-...+.++-++..++....+++. .+++.++.+++.++|+-+-+....+...+.
T Consensus 34 t~~~s~~~r~~ia~~a~l~a~~i----ll~f~~~G~~iL~~fGIsl~afrIaGGiiL 86 (214)
T PRK11111 34 TSHQTAAERNKTNLTANLSVAII----LLISLFLGDFILNLFGISIDSFRIAGGILV 86 (214)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33456566666666655554443 345577899999999977665555555443
No 72
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=25.20 E-value=5.1e+02 Score=24.50 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=73.0
Q ss_pred HHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhcc-cccccccCchHHHH
Q 023252 103 YFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL-----------AAAEMVTVSIVLLFCRH-ILGYALSSSENIVH 170 (285)
Q Consensus 103 ~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~i~~lf~~~~~~~~ 170 (285)
..+...+++++..+.||+.=.|-+.-.++..+....= .--+.++..=.++++.. .+.--|.++++. +
T Consensus 291 liP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~L-A 369 (627)
T COG3158 291 LIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNL-A 369 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHH-H
Confidence 4566788899999999999888888888877654310 00000111100000111 112223333332 1
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 023252 171 RLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALL 250 (285)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~ 250 (285)
.+... ...-.+ ..-.....-+++-.++-+..+...+.. ....+-..++.....+ =..|-|+...++..+..++.
T Consensus 370 aAYGi--AVTgtM--~iTt~L~~~~~~~~w~w~~~~~~~~~~-~f~~id~~Ff~AN~~K-i~~GGw~pllia~~i~~vM~ 443 (627)
T COG3158 370 AAYGI--AVTGTM--VITTILLTVVMRKKWKWRKWLVALILI-VFLAIDILFFAANLLK-IHDGGWLPLLLAAVIFFVMW 443 (627)
T ss_pred HhhCh--heeehh--HHHHHHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHHHHhhhhh-hccCCChHHHHHHHHHHHHH
Confidence 11111 111111 112223455677777777777766655 4444555555555444 35688888888876655543
No 73
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=25.00 E-value=5.5e+02 Score=23.63 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=17.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 023252 52 KEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPN 84 (285)
Q Consensus 52 ~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 84 (285)
++++.++.-.+--++...+.......+...+|.
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~ 36 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELGI 36 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555554444455555554445555555664
No 74
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=23.82 E-value=3.3e+02 Score=20.66 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 023252 16 GLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWS 71 (285)
Q Consensus 16 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~ 71 (285)
.++-+...+...|.++.-+....... ...++++++++.++.|+-.++-.+.....
T Consensus 9 ~i~ii~~~~~~GY~~~v~~~~~~g~~-~~lP~~~~~~~l~~~G~~~~ii~ivy~i~ 63 (169)
T PF13197_consen 9 IIPIIGLFLLLGYLVRVIRSTAIGGS-DPLPEFNDWGELFVDGLKAFIISIVYSIP 63 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666653332211110 11234557777777777666655444433
No 75
>PRK10995 inner membrane protein; Provisional
Probab=22.65 E-value=4.1e+02 Score=21.40 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=35.3
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHh
Q 023252 115 TRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADM 175 (285)
Q Consensus 115 ~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~ 175 (285)
|..-..-...+.++-++..++....++.+. ++..+..+.+.+.|+-+.+..+.+...
T Consensus 26 pif~~lt~~~~~~~r~~ia~~~~~~a~~il----l~f~~~G~~il~~fgIs~~a~rIaGGi 82 (221)
T PRK10995 26 ALFLGLSGNMTPEERNRQALMASVYVFAIM----MVAFYAGQLVMSTFGISIPGLRIAGGL 82 (221)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444445666777777776666555544 455667888999998766554444443
No 76
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=21.47 E-value=96 Score=23.03 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCC
Q 023252 47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 124 (285)
Q Consensus 47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~ 124 (285)
...++-++=|++.|.=++..-.-..+..+.+-.. ++ .-+|-.++..-+.++...+.+|+..|..--+-...|+.
T Consensus 31 ~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssn-Yl---aiia~l~iy~ll~nllLlivIgivvaGvygi~kl~g~~ 104 (169)
T COG5130 31 VTREFFNIGRISVPQNFNEAQSRVFANLDRFSSN-YL---AIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLRGRP 104 (169)
T ss_pred cHHHHhccccccCCcchHHHHHHHHhhHHHHhhh-HH---HHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcccCc
Confidence 3556667778888987777655555554433222 22 13455566666677777777787776665555555543
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.03 E-value=1.1e+02 Score=22.30 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=9.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 023252 9 NGAALAVGLSYWFNVLLLGFYIK 31 (285)
Q Consensus 9 ~Gaa~at~ia~~~~~~~~~~~~~ 31 (285)
.|..+|.+.+-+. .+++++|+.
T Consensus 67 ~~Ii~gv~aGvIg-~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIG-IILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eehhHHHHHHHHH-HHHHHHHHH
Confidence 3444454444433 333444443
No 78
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=20.90 E-value=6.2e+02 Score=22.74 Aligned_cols=83 Identities=7% Similarity=0.054 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCC
Q 023252 45 IDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 124 (285)
Q Consensus 45 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~ 124 (285)
+.+.++.++.++.++|..+.-.. .+..+..+... +.+.+++++...+.--... +++-
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~i-----il~~i~~g~~t--~teaa~~~~~~~l~i~~~~----------------~~~~ 259 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVI-----ILGGIYLGIFT--PTEAAAVAVVYALVIGLFV----------------YRRL 259 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHH-----HHHHhhhcccc--hhhhhhhhHHHHHHHHHhh----------------hccc
Confidence 34566677777777776553322 22334455555 3355555554332211111 5667
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 125 NPKAAKMAVCAIIILAAAEMVTVSIV 150 (285)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
+.++..+....+.+.+..+..++...
T Consensus 260 ~~~~l~~~l~~~~~~~~~i~~iia~a 285 (416)
T PF06808_consen 260 SWKDLWRALVETARTTGMILFIIAAA 285 (416)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666555443
No 79
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.39 E-value=5.3e+02 Score=21.83 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcCH
Q 023252 243 SFVQAALLALKIVFTDW 259 (285)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ 259 (285)
..+.++..+++++|++|
T Consensus 301 m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 301 MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33444455677777777
No 80
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=20.14 E-value=5.3e+02 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH---HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHH
Q 023252 92 FSLCFTITYLHY---FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAII 137 (285)
Q Consensus 92 ~~~~~~i~~~~~---~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~ 137 (285)
.+++-++..+.. .+...+........-++..++|+++.++......
T Consensus 97 ialAvPvgllg~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~~~ 145 (267)
T PRK09757 97 IGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTM 145 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHH
Confidence 345555544333 3344555666667777778899988887655443
Done!