Query 023252
Match_columns 285
No_of_seqs 140 out of 1707
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.5E-32 1.2E-36 243.1 18.8 252 4-257 188-446 (460)
2 3mkt_A Multi antimicrobial ext 99.9 4.5E-22 1.5E-26 177.6 19.4 208 46-257 6-217 (460)
3 2jwa_A Receptor tyrosine-prote 51.2 13 0.00044 20.7 2.5 6 9-14 15-20 (44)
4 2k1k_A Ephrin type-A receptor 50.3 17 0.00059 19.5 2.8 12 9-20 14-25 (38)
5 4aps_A DI-OR tripeptide H+ sym 47.5 1.3E+02 0.0045 25.6 14.6 11 115-125 340-350 (491)
6 4ev6_A Magnesium transport pro 43.3 36 0.0012 28.3 5.3 43 215-259 287-338 (339)
7 2knc_B Integrin beta-3; transm 24.7 1.4E+02 0.0047 18.9 5.2 19 231-249 9-27 (79)
8 1pw4_A Glycerol-3-phosphate tr 23.7 3.1E+02 0.011 22.6 11.6 226 32-285 8-238 (451)
9 2iub_A CORA, divalent cation t 19.5 89 0.003 26.1 3.7 72 188-259 284-362 (363)
10 3o7q_A L-fucose-proton symport 16.9 4.3E+02 0.015 21.6 17.4 218 16-262 214-438 (438)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.5e-32 Score=243.13 Aligned_cols=252 Identities=23% Similarity=0.384 Sum_probs=229.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchh-c-ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEK-T-RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL 81 (285)
Q Consensus 4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~ 81 (285)
+++|+.|+++||.+++++..++..++++++++.++ + ++++.+.+++.+|++++.+.|..++.+.......+++.++++
T Consensus 188 p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 267 (460)
T 3mkt_A 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAP 267 (460)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998888876544322 1 223334567889999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252 82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA 161 (285)
Q Consensus 82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 161 (285)
+| +.++++|+++.++.++...+..+++++..|.+++++|+||++++++..++++.+++.++++.++.++++++++.++
T Consensus 268 ~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 345 (460)
T 3mkt_A 268 LG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345 (460)
T ss_dssp TS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 6699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH----hc-CCcchhh
Q 023252 162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV----FQ-LKGKGLL 236 (285)
Q Consensus 162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~ 236 (285)
|++|+++.+.+..+++++++..++.+++.+..+++++.||++.+++.++.+.|++++|+++++... ++ +|..|+|
T Consensus 346 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~ 425 (460)
T 3mkt_A 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425 (460)
T ss_dssp SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHH
Confidence 999999889999999999999999999999999999999999999999999779999999999887 67 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 023252 237 IGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~ 257 (285)
+++.+++.+.+++..++++|.
T Consensus 426 ~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 426 LGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876665554
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.89 E-value=4.5e-22 Score=177.55 Aligned_cols=208 Identities=17% Similarity=0.188 Sum_probs=192.5
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252 46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125 (285)
Q Consensus 46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~ 125 (285)
..++..|++++.++|..++++...+...+++.+++++| ++++++++.+.++..+...+..|++++..+.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45788999999999999999999999999999999999 6689999999999888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG 205 (285)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 205 (285)
++++++..+.++.+..+.+++..++ +.+.+++..+++.|++..+.+..|+++++++.++..+.....+++|+.||.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998775 778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252 206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFT 257 (285)
Q Consensus 206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 257 (285)
+..++.+ .++++.+++++... +++|..|+.+++.+++.+..+...+.++++
T Consensus 163 ~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 77899999998865 379999999999999999998877766654
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.21 E-value=13 Score=20.73 Aligned_cols=6 Identities=17% Similarity=0.136 Sum_probs=2.5
Q ss_pred chhHHH
Q 023252 9 NGAALA 14 (285)
Q Consensus 9 ~Gaa~a 14 (285)
+|+..|
T Consensus 15 a~~vVG 20 (44)
T 2jwa_A 15 ISAVVG 20 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=50.29 E-value=17 Score=19.49 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=5.3
Q ss_pred chhHHHHHHHHH
Q 023252 9 NGAALAVGLSYW 20 (285)
Q Consensus 9 ~Gaa~at~ia~~ 20 (285)
+|+.++.+.+-.
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 344444444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=47.47 E-value=1.3e+02 Score=25.57 Aligned_cols=11 Identities=0% Similarity=-0.091 Sum_probs=5.6
Q ss_pred HHHhhhhcCCC
Q 023252 115 TRVSNELGAGN 125 (285)
Q Consensus 115 ~~vs~~~G~~~ 125 (285)
......+|+++
T Consensus 340 ~~l~~r~~~r~ 350 (491)
T 4aps_A 340 AWLWTAWKKNQ 350 (491)
T ss_dssp HHHHHHTTTC-
T ss_pred HHHHHHHhccC
Confidence 34555666554
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.27 E-value=36 Score=28.27 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCCc---------chhhHHHHHHHHHHHHHHHHHHHhcCH
Q 023252 215 LVGIPIAAVLAFVFQLKG---------KGLLIGLATGSFVQAALLALKIVFTDW 259 (285)
Q Consensus 215 ~~~i~~~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (285)
++.+|++++-+. ++++. .|.|+...+ ..+.++..+++++|++|
T Consensus 287 ~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGI-YGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhh-ccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 344677766554 33332 244444333 44445555677777777
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.71 E-value=1.4e+02 Score=18.87 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=8.9
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 023252 231 KGKGLLIGLATGSFVQAAL 249 (285)
Q Consensus 231 g~~g~~~a~~~~~~~~~~~ 249 (285)
++.++..+.+.+-.+..++
T Consensus 9 n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 3445555555554444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.68 E-value=3.1e+02 Score=22.65 Aligned_cols=226 Identities=8% Similarity=-0.135 Sum_probs=0.0
Q ss_pred ccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhh
Q 023252 32 YSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGS 111 (285)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~ 111 (285)
.++...+.....+...+...+.++....-.++..............+...+ .++.+.+.......+...+..+..|.-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l- 85 (451)
T 1pw4_A 8 PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSV- 85 (451)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCcccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHH-
Q ss_pred hHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccccccccCchHHHHHHHHhhHHHHHHHHhhh
Q 023252 112 TVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFC----RHILGYALSSSENIVHRLADMVPFICLSIIMDS 187 (285)
Q Consensus 112 a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (285)
.++.-++-..........++.++..+ .+.+..++ ....+.-...+.....
T Consensus 86 -----------------~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 86 -----------------SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF---------VLLFLCGWFQGMGWPP 139 (451)
T ss_dssp -----------------HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH---------HHHHHHHHHHHHTHHH
T ss_pred -----------------HHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHH---------HHHHHHHHHhhhccch
Q ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 023252 188 LQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLK-GKGLLIGLATGSFVQAALLALKIVFTDWGKQASKA 266 (285)
Q Consensus 188 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
......-......+.+.....+........+.....-......+ ....++...+...+..++.....+..+.+....+.
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI 219 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh
Q ss_pred HHHHhcCCchhchhhhhcC
Q 023252 267 RERIFEGDSQQRQSQEIDS 285 (285)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ 285 (285)
++..++++.+..++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~ 238 (451)
T 1pw4_A 220 EEYKNDYPDDYNEKAEQEL 238 (451)
T ss_dssp TTTCCC-------------
T ss_pred hhhcccccccchhhhhccc
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.51 E-value=89 Score=26.12 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH-------hcCCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 023252 188 LQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV-------FQLKGKGLLIGLATGSFVQAALLALKIVFTDW 259 (285)
Q Consensus 188 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (285)
+..+....+.-.+...--..-.+.....+.+|++++-+.+ |..+-...++...+...+.++..+++++|++|
T Consensus 284 l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 284 VSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.92 E-value=4.3e+02 Score=21.63 Aligned_cols=218 Identities=7% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccccchhc--ccCCCHHHHHhHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHhcC-CCccchhh
Q 023252 16 GLSYWFNVLLLGFYIKYSSECEKT--RASFSIDVFSSIKEFI--RFSVPSAVMVCFEWWSYEVLILLSGLL-PNPKLEAS 90 (285)
Q Consensus 16 ~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il--~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~a 90 (285)
..+-.........++.+..+.++. ..+.....++.+++++ +.-+...+..+...............+ - ++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g 291 (438)
T 3o7q_A 214 IIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV--EEIPG 291 (438)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCC
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHH
Q 023252 91 VFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVH 170 (285)
Q Consensus 91 a~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~ 170 (285)
.-............+...++.-....+++.+|++ +.+..+.+...+..+.+....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------------ 349 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH----------KVLAAYALIAMALCLISAFAGGHV------------ 349 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCCHHH------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHcCCcH------------
Q ss_pred HHHHhhHHHHHHHHhhhHHHHHHHH-HhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcch-hhHHHHHHHHHHHH
Q 023252 171 RLADMVPFICLSIIMDSLQAVLSGV-ARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKG-LLIGLATGSFVQAA 248 (285)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g-~~~a~~~~~~~~~~ 248 (285)
........+............. .+...+.+...........+-.....++.... .+..| ...+..+......+
T Consensus 350 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l--~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 350 ---GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFV--SDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp ---HHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHH--HHHHTSSGGGGHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcCHHHH
Q 023252 249 LLALKIVFTDWGKQ 262 (285)
Q Consensus 249 ~~~~~~~~~~~~~~ 262 (285)
...+..+.++.+++
T Consensus 425 ~~~~~~~~~~~~~~ 438 (438)
T 3o7q_A 425 IFIFARFRSQTATN 438 (438)
T ss_dssp HHHHHTTCCCC---
T ss_pred HHHHHHHHHhccCC
Done!