Query 023252
Match_columns 285
No_of_seqs 140 out of 1707
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 03:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023252.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023252hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 13.6 87 0.0063 15.7 4.3 33 120-152 3-35 (42)
2 d1fftc_ f.25.1.1 (C:) Cytochro 8.7 1.6E+02 0.012 19.9 3.8 37 108-144 59-95 (185)
3 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.8 1.3E+02 0.0096 15.9 2.2 29 117-145 2-30 (53)
4 d2iuba2 f.17.3.1 (A:286-349) M 6.3 2.1E+02 0.015 15.3 2.8 11 232-242 39-49 (64)
5 d2yvxa3 f.57.1.1 (A:276-448) M 6.0 3.9E+02 0.028 17.8 5.7 36 117-152 65-100 (173)
6 d2hw4a1 d.322.1.1 (A:5-122) Ph 5.5 1.4E+02 0.01 18.8 1.8 18 118-135 90-107 (118)
7 d1v54l_ f.23.6.1 (L:) Mitochon 5.0 1.6E+02 0.012 14.9 1.4 21 138-158 23-43 (46)
8 d1su0b_ d.224.1.2 (B:) IscU ho 5.0 3.9E+02 0.029 16.7 4.5 31 107-137 60-90 (136)
9 d1nekc_ f.21.2.2 (C:) Succinat 4.9 3.9E+02 0.029 16.5 4.4 27 124-150 101-127 (129)
10 d2csba3 a.60.2.4 (A:410-464) T 4.7 1.9E+02 0.014 14.5 1.6 16 117-134 18-33 (55)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.65 E-value=87 Score=15.74 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=18.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 120 ELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL 152 (285)
Q Consensus 120 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (285)
.+|+-|.+.-.+.+.--+++..-.++++.+++.
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666655555554444433
No 2
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=8.72 E-value=1.6e+02 Score=19.92 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=23.9
Q ss_pred hhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHH
Q 023252 108 GFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEM 144 (285)
Q Consensus 108 ~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~ 144 (285)
-.++.......++..++|.++++.....++.++.+..
T Consensus 59 l~SS~~~~~a~~~~~~~~~~~~~~~L~~t~~lG~~Fl 95 (185)
T d1fftc_ 59 LFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI 95 (185)
T ss_dssp GGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566677888888887777766666553
No 3
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.80 E-value=1.3e+02 Score=15.92 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=17.6
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 023252 117 VSNELGAGNPKAAKMAVCAIIILAAAEMV 145 (285)
Q Consensus 117 vs~~~G~~~~~~~~~~~~~~~~~~~~~~~ 145 (285)
.++.+|.|..+-++........++..-++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 46677766666666666665555554443
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.29 E-value=2.1e+02 Score=15.34 Aligned_cols=11 Identities=27% Similarity=0.075 Sum_probs=3.7
Q ss_pred cchhhHHHHHH
Q 023252 232 GKGLLIGLATG 242 (285)
Q Consensus 232 ~~g~~~a~~~~ 242 (285)
..|.++...+.
T Consensus 39 ~~~~~~~~~~~ 49 (64)
T d2iuba2 39 KWGYPVVLAVM 49 (64)
T ss_dssp ---CHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 33445444443
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.00 E-value=3.9e+02 Score=17.79 Aligned_cols=36 Identities=8% Similarity=-0.063 Sum_probs=26.5
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 117 VSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL 152 (285)
Q Consensus 117 vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (285)
=+-+.|+-+.++.++..++=+..+++.+..++++..
T Consensus 65 R~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 65 RALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp HHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446657788888888888888888887776543
No 6
>d2hw4a1 d.322.1.1 (A:5-122) Phosphohistidine phosphatase 1, PHP14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.46 E-value=1.4e+02 Score=18.84 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=12.7
Q ss_pred hhhhcCCChHHHHHHHHH
Q 023252 118 SNELGAGNPKAAKMAVCA 135 (285)
Q Consensus 118 s~~~G~~~~~~~~~~~~~ 135 (285)
|+.+|+.|+++.++.++.
T Consensus 90 S~~fG~AdH~~t~eiL~~ 107 (118)
T d2hw4a1 90 SMAYGPAQHAISTEKIKA 107 (118)
T ss_dssp CTTTCBCCHHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHH
Confidence 456777787777777654
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.00 E-value=1.6e+02 Score=14.93 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 023252 138 ILAAAEMVTVSIVLLFCRHIL 158 (285)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i 158 (285)
.+++.++.-.++.+++.+.++
T Consensus 23 ~m~~~fGsgfa~PF~ivRhqL 43 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIVRHQL 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHH
Confidence 333444444444444444443
No 8
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.99 E-value=3.9e+02 Score=16.67 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHhhhhcCCChHHHHHHHHHHH
Q 023252 107 YGFGSTVSTRVSNELGAGNPKAAKMAVCAII 137 (285)
Q Consensus 107 ~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~ 137 (285)
-++++|.+.++++..-.++.+++.+......
T Consensus 60 Cai~~ASasil~e~i~gk~~~e~~~l~~~~~ 90 (136)
T d1su0b_ 60 CTISTASSSMMTDAVIGKSKEEALALADIFS 90 (136)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3678889999999888899999988776543
No 9
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=3.9e+02 Score=16.50 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252 124 GNPKAAKMAVCAIIILAAAEMVTVSIV 150 (285)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (285)
++.+..++.....+..+++.++...+.
T Consensus 101 ~~~~~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 101 ETFEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777776666666666655543
No 10
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=4.70 E-value=1.9e+02 Score=14.46 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=10.4
Q ss_pred HhhhhcCCChHHHHHHHH
Q 023252 117 VSNELGAGNPKAAKMAVC 134 (285)
Q Consensus 117 vs~~~G~~~~~~~~~~~~ 134 (285)
.-.++ +|++++++..+
T Consensus 18 llraf--gnpervkqlar 33 (55)
T d2csba3 18 LLRAF--GNPERVKQLAR 33 (55)
T ss_dssp HHHHH--SSHHHHHHHHH
T ss_pred HHHHh--CCHHHHHHHHH
Confidence 33444 57888887765
Done!