Citrus Sinensis ID: 023253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
ccccEEEEEEccccEEEEEcccccccccccccEEEccccccccccccccEEEEcccccccccccccEEEEcEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHcccc
cccEEEEEEEccccEEEEEEcccccccccccccEEEcccHHHcccEEEEEEEEEcccccEEEcccEEEEEEEEEEEEEEcHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHccccc
mgqalgciqvdqSTVAIKETfgkfddvlepgchclpwclgsqvagqlSLRVQQLDvrcetktkdnvFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRasvpkldldatfEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLafsenvpgtsskdvMDMVLVTQYFDTMKeigassktnsvfiphgpgavKDIASQIREGLLQANATT
mgqalgciqvdqSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVrcetktkdnvfvNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFsenvpgtsskdvmDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNeinaaarlrlaanekaeaekiLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
****LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLA*********ILQI********SKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS**TNSVFIPHG***V******************
***ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA**GI**QRQAIVDGLRDSVLA***********DVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQI****L******
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
*GQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA****
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MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARxxxxxxxxxxxxxxxxxxxxxGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
Q9CAR7286 Hypersensitive-induced re yes no 0.992 0.989 0.908 1e-148
Q9FM19286 Hypersensitive-induced re no no 0.992 0.989 0.883 1e-147
Q9SRH6285 Hypersensitive-induced re no no 0.989 0.989 0.755 1e-127
Q9FHM7292 Hypersensitive-induced re no no 0.975 0.952 0.589 7e-97
P16148184 Protein PPLZ12 OS=Lupinus N/A no 0.596 0.923 0.629 2e-60
P72655321 Uncharacterized protein s N/A no 0.891 0.791 0.239 5e-11
P0DKS0313 Protein QmcA OS=Wiggleswo yes no 0.845 0.769 0.227 3e-10
P0AA56305 Protein QmcA OS=Shigella yes no 0.821 0.767 0.246 2e-09
P0AA53305 Protein QmcA OS=Escherich N/A no 0.821 0.767 0.246 2e-09
P0AA54305 Protein QmcA OS=Escherich yes no 0.821 0.767 0.246 2e-09
>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/283 (90%), Positives = 273/283 (96%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 180
           KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMNEINAA+R+R AA+EKAEA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query: 181 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240
           EKILQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 283
           QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct: 241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1 Back     alignment and function description
>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1 Back     alignment and function description
>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1 Back     alignment and function description
>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1 Back     alignment and function description
>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
255558218285 Protein PPLZ12, putative [Ricinus commun 0.996 0.996 0.926 1e-156
449458019284 PREDICTED: hypersensitive-induced respon 0.996 1.0 0.922 1e-154
356500513286 PREDICTED: hypersensitive-induced respon 0.996 0.993 0.887 1e-150
14150732284 hypersensitive-induced response protein 0.985 0.989 0.903 1e-148
115476296284 Os08g0398400 [Oryza sativa Japonica Grou 0.985 0.989 0.903 1e-148
225424906286 PREDICTED: hypersensitive-induced respon 0.985 0.982 0.903 1e-148
296086429373 unnamed protein product [Vitis vinifera] 0.985 0.753 0.903 1e-148
217074028286 unknown [Medicago truncatula] 1.0 0.996 0.880 1e-147
388518863286 unknown [Medicago truncatula] 1.0 0.996 0.880 1e-147
354683205286 hypersensitive induced reaction protein 0.996 0.993 0.887 1e-147
>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/284 (92%), Positives = 280/284 (98%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCVQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA+DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+ FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAADAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSAFEQ 120

Query: 121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 180
           KNDIAKAVE ELEKAMSHYG+EIVQTLIVDIEPDEHVKRAMNEINAAAR+R+AA+EKAEA
Sbjct: 121 KNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAASEKAEA 180

Query: 181 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 284
           QYFDTMKEIGASSK++SVFIPHGPGAV+DIA+QIR+GLLQAN+T
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRDIATQIRDGLLQANST 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500513|ref|XP_003519076.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|14150732|gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein [Oryza sativa] gi|125561455|gb|EAZ06903.1| hypothetical protein OsI_29142 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115476296|ref|NP_001061744.1| Os08g0398400 [Oryza sativa Japonica Group] gi|37805955|dbj|BAC99370.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|37806020|dbj|BAC99432.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|113623713|dbj|BAF23658.1| Os08g0398400 [Oryza sativa Japonica Group] gi|215694568|dbj|BAG89561.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640506|gb|EEE68638.1| hypothetical protein OsJ_27208 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|225424906|ref|XP_002276517.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086429|emb|CBI32018.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|217074028|gb|ACJ85374.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388518863|gb|AFK47493.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|354683205|gb|AER30501.1| hypersensitive induced reaction protein 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TAIR|locus:2196749286 AT1G69840 [Arabidopsis thalian 0.992 0.989 0.848 3.9e-124
TAIR|locus:2170698286 HIR1 "HYPERSENSITIVE-INDUCED R 0.992 0.989 0.812 6.9e-118
TAIR|locus:2100242285 HIR2 "hypersensitive induced r 0.989 0.989 0.691 2.3e-101
TAIR|locus:2153117292 AT5G51570 [Arabidopsis thalian 0.975 0.952 0.535 1.8e-78
UNIPROTKB|Q81JF5321 BAS1928 "SPFH domain/Band 7 fa 0.866 0.769 0.249 2.1e-15
TIGR_CMR|BA_2075321 BA_2075 "SPFH domain/Band 7 fa 0.866 0.769 0.249 2.1e-15
UNIPROTKB|Q602F1309 MCA3112 "SPFH domain/Band 7 fa 0.870 0.802 0.223 1e-10
UNIPROTKB|Q5LQ79296 SPO2617 "SPFH domain/band 7 fa 0.522 0.503 0.294 2.8e-10
TIGR_CMR|SPO_2617296 SPO_2617 "SPFH domain/band 7 f 0.522 0.503 0.294 2.8e-10
FB|FBgn0034936369 CG2970 [Drosophila melanogaste 0.912 0.704 0.219 9.9e-10
TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 240/283 (84%), Positives = 253/283 (89%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct:    61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query:   121 KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXX 180
             KNDIAK VE ELEKAMSHYGYEIVQTLIVDIEPD HVKRAMN                  
Sbjct:   121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query:   181 XXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240
                LQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct:   181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query:   241 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 283
             QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct:   241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
FB|FBgn0034936 CG2970 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAR7HIR2_ARATHNo assigned EC number0.90810.99290.9895yesno
Q9FM19HIR1_ARATHNo assigned EC number0.88330.99290.9895nono
Q9SRH6HIR3_ARATHNo assigned EC number0.75530.98940.9894nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
RHIR1
Os08g0398400 (284 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-141
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 2e-27
smart00244160 smart00244, PHB, prohibitin homologues 4e-26
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 9e-26
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 1e-25
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 2e-20
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 1e-10
TIGR01933261 TIGR01933, hflK, HflK protein 5e-07
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 1e-05
cd03408207 cd03408, Band_7_5, A subgroup of the band 7 domain 5e-05
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 2e-04
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 0.003
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  397 bits (1023), Expect = e-141
 Identities = 172/264 (65%), Positives = 200/264 (75%), Gaps = 2/264 (0%)

Query: 12  QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVV 71
           QS VAI E FGKF  V  PGCH +       VAG+LSLRVQQLDVR ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEE 131
             +QYR   E A+DAFYKL N   QIQ+YVFDV+RA +PKL LD  FEQK++IAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEG 191
           L +AMS YG+EIV TLI DI+PD  VKRAMNEINAA R R+AA  KAEAEKI  IK AE 
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 192 EAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 251
           +AE+K L G+G A QRQAI DGLR+S+L+ ++ VPG ++KDVMD++LV QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 252 SSKTNSVFIPHGPGAVKDIASQIR 275
           SS T  VF PHGPG  +DI +QIR
Sbjct: 240 SSST-VVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 100.0
KOG2621288 consensus Prohibitins and stomatins of the PID sup 100.0
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.98
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.97
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.95
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.92
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.89
KOG2962322 consensus Prohibitin-related membrane protease sub 99.86
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.86
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.82
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.77
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.76
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.67
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.49
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 99.05
PTZ00491850 major vault protein; Provisional 99.01
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 97.27
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 96.94
PRK13665316 hypothetical protein; Provisional 96.9
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.69
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.58
PRK11029334 FtsH protease regulator HflC; Provisional 96.55
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 96.54
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.48
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 96.31
PRK10930419 FtsH protease regulator HflK; Provisional 95.83
KOG2620301 consensus Prohibitins and stomatins of the PID sup 95.56
COG2268548 Uncharacterized protein conserved in bacteria [Fun 94.63
COG1580159 FliL Flagellar basal body-associated protein [Cell 94.24
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 92.85
PRK01558198 V-type ATP synthase subunit E; Provisional 90.23
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 88.58
PRK06568154 F0F1 ATP synthase subunit B; Validated 88.56
KOG2668428 consensus Flotillins [Intracellular trafficking, s 88.25
PRK01558198 V-type ATP synthase subunit E; Provisional 86.98
PRK01005207 V-type ATP synthase subunit E; Provisional 86.69
PRK01005207 V-type ATP synthase subunit E; Provisional 86.13
PRK07718142 fliL flagellar basal body-associated protein FliL; 85.87
PRK06654181 fliL flagellar basal body-associated protein FliL; 85.76
PRK05697137 flagellar basal body-associated protein FliL-like 85.75
PF0374899 FliL: Flagellar basal body-associated protein FliL 85.15
TIGR01147113 V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi 84.42
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 83.43
PLN03086 567 PRLI-interacting factor K; Provisional 83.39
PRK07021162 fliL flagellar basal body-associated protein FliL; 82.07
PRK12785166 fliL flagellar basal body-associated protein FliL; 82.06
PRK02292188 V-type ATP synthase subunit E; Provisional 81.87
COG4864328 Uncharacterized protein conserved in bacteria [Fun 81.85
COG2811108 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E 80.86
PRK08404103 V-type ATP synthase subunit H; Validated 80.02
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=1.3e-54  Score=380.65  Aligned_cols=262  Identities=65%  Similarity=0.947  Sum_probs=249.2

Q ss_pred             CCeEEEEeecCeeeeeeCCcceeecCccceeeEEeeeeeEEEeecCCCcccCCCcEEEEEEEEEEEEccchhhhhhcccc
Q 023253           12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS   91 (285)
Q Consensus        12 ~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~v~~~v~~~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~   91 (285)
                      +|++|||++||+++++++||+||++||+ +++...++++.+.++++.+++|+|++.|.|+++++|||.||.+.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            5899999999999999999999999996 566457899999999998899999999999999999999987778999999


Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 023253           92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR  171 (285)
Q Consensus        92 ~~~~~l~~~~~~~lr~vi~~~~~~~l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~  171 (285)
                      ++...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|++|.||+++.++|++++.|+|++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023253          172 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA  251 (285)
Q Consensus       172 ~a~~~~Ae~~~~~~~~~Aeaeaea~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~  251 (285)
                      ++.+.+||+++...+..|+|++++.+++|+|+|++.++.|+|+++++..+.++++..++++++++++..+|+|+|+++++
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999876777888999999999999999997


Q ss_pred             CCCCcEEEEcCCCCchhhHHHHHH
Q 023253          252 SSKTNSVFIPHGPGAVKDIASQIR  275 (285)
Q Consensus       252 ~~~~~~i~lp~~~~~~~~~~~~~~  275 (285)
                      +++ +++++|.+++++.+++.+|+
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~~  262 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQIR  262 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhcC
Confidence            654 89999999999999998874

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] Back     alignment and domain information
>PRK08404 V-type ATP synthase subunit H; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 1e-12
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 8e-10
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 2e-07
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 9e-07
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 40  GSQVAGQLSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAFYK---LSNTRS 95
                 ++SL +  L  RCE  +T + V + V    Q + + EK   A      L     
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQ 62

Query: 96  QIQAYVFDVI----RASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 151
            I+  V   +    R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122

Query: 152 EPDEHVKRAMNEINAAAR 169
                   ++ +   +  
Sbjct: 123 YDKVDYLSSLGKTQTSGP 140
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.97
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.95
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.87
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.86
2zuo_A861 MVP, major vault protein; repeat domains, protein- 99.09
3v6i_B105 V-type ATP synthase, subunit (VAPC-therm); periphe 85.68
3v6i_A187 V-type ATP synthase subunit E; peripheral stator s 80.64
2k6i_A56 Uncharacterized protein MJ0223; H subunit, A1AO AT 80.31
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.97  E-value=1.7e-30  Score=216.18  Aligned_cols=176  Identities=24%  Similarity=0.293  Sum_probs=139.5

Q ss_pred             eeeEEeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhhhccccChHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 023253           41 SQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE  119 (285)
Q Consensus        41 ~~v~~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~~l~~  119 (285)
                      +++ ..+|+|.++++++. .++|+|+++|.|+++++|||.||  .++++.+.|+...+.+++++++|+++|+++++++++
T Consensus         4 ~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~   80 (188)
T 3bk6_A            4 EKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS   80 (188)
T ss_dssp             EEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             EEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence            566 68999999999987 89999999999999999999994  577899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023253          120 QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA  199 (285)
Q Consensus       120 ~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A~~~~~a~~~~Ae~~~~~~~~~Aeaeaea~~~~  199 (285)
                      +|++|+..+++.|++.+++|||.|.+|.|++|.||+++.++|++++.|++++++.+.+|||+           +++.++.
T Consensus        81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege-----------~~a~~~~  149 (188)
T 3bk6_A           81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAE-----------RQAAEKL  149 (188)
T ss_dssp             CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHH
Confidence            99999999999999999999999999999999999999999999888887766655444444           4433333


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCC
Q 023253          200 GLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKT  255 (285)
Q Consensus       200 Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~  255 (285)
                      |+|               .+.++.+          +.++.+||||++.++++++++
T Consensus       150 a~a---------------~~~~~~~----------~~~l~lr~le~~~~ia~~~~~  180 (188)
T 3bk6_A          150 REA---------------AEIISEH----------PMALQLRTLQTISDVAGDKSN  180 (188)
T ss_dssp             HHH---------------HHHHHHC----------TTHHHHHHTTC----------
T ss_pred             HHH---------------HHHHHhC----------HHHHHHHHHHHHHHHhcCCCC
Confidence            222               1122211          246778999999999875443
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I Back     alignment and structure
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Back     alignment and structure
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 6e-20
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (201), Expect = 6e-20
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 47  LSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAF-------YKLSNTRSQIQ 98
           +SL +  L  RCE  +T + V + V    Q + + EK   A          + + ++ + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVK 158
             +   +R+ +  L ++  ++ ++  AK V E     +   G EI+   I D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 159 RAMNEINAAAR 169
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.9e-22  Score=155.86  Aligned_cols=123  Identities=20%  Similarity=0.339  Sum_probs=110.4

Q ss_pred             EeeeeeEEEeecCC-CcccCCCcEEEEEEEEEEEEccchhhhh-----h--ccccChHHHHHHHHHHHHHHHcCCCCHHH
Q 023253           45 GQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDA-----F--YKLSNTRSQIQAYVFDVIRASVPKLDLDA  116 (285)
Q Consensus        45 ~~v~~~~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~-----~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~~  116 (285)
                      .++|++.++++++. +++|+||++|.|+++++|||.||...-.     +  +...+++..|.+.+++++|+++|++++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~e   87 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ   87 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            57899999999997 7899999999999999999998642111     1  34567888999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 023253          117 TFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAA  167 (285)
Q Consensus       117 l~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a~~~~~~A  167 (285)
                      ++++|++|.+.+++.+++.+.+|||+|.++.|+||.+|+++.++|.+++.|
T Consensus        88 l~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          88 IYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999876554