BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023255
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03427|LAMC_DROME Lamin-C OS=Drosophila melanogaster GN=LamC PE=1 SV=2
Length = 621
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 29 PPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88
P TR Q L HL DR+A +++L +N RL QEL+LA+ +
Sbjct: 35 PTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLT-------QELNLAQDTVNR 87
Query: 89 LSSVAASVKAERDAEVRELYEKSLKLDAELRV-IESMHAELDRVRADIEKLCVIKQEMIK 147
+S +V + A R+L +++ K A+L + I+ + E D ++ ++K K+ +
Sbjct: 88 ETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKT--KEATVA 145
Query: 148 D---------LNEING-------DLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190
+ NE+NG D K D++K++A E E R+++ R +E E
Sbjct: 146 ENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELA---LENERLRRQLDDLRKQLEAE 201
>sp|P21910|LAML2_XENLA Lamin-L(II) OS=Xenopus laevis PE=2 SV=1
Length = 623
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 21/141 (14%)
Query: 30 PLS-TRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRH 88
PLS TR Q L HL DR+A+ +++L +N RL ++ K+E++ R
Sbjct: 24 PLSPTRISRLQEKEELRHLNDRLAVYIDRVRALELENDRLMV-KISEKEEVT-----TRE 77
Query: 89 LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148
+S + ++E A+ R++ +++ + A L++ EL + R+D++ E+ K+
Sbjct: 78 VSGIKNLYESEL-ADARKVLDETARERARLQI------ELGKFRSDLD-------ELNKN 123
Query: 149 LNEINGDLAKARDESKDMAAI 169
+ + DL+ A+ KD+ A+
Sbjct: 124 YKKKDADLSTAQGRIKDLEAL 144
>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1
SV=4
Length = 1962
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA----- 98
+ +L D IA Q I L ++ + T+ +EL AE ++ HL+ V A ++
Sbjct: 974 IRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDEL 1033
Query: 99 ----ERDAEVRELYEKS-LKLDAELRVIESMHAELDRVRADIEK 137
ER+ +VR EKS K++ +L++ + A+L+R + ++E+
Sbjct: 1034 EDSLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQ 1077
>sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=3
Length = 1941
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 94 ASVKAERDAEVRELYEKSLKLDAE-LRVIESMHAELD-RVRADIEKLCVIKQEMIKDLNE 151
+ VKAE D ++ E E+ L R +ES+ A LD RA E L +K++M DLN+
Sbjct: 1573 SQVKAEVDRKLAEKDEECANLRRNHQRAVESLQASLDAETRARNEAL-RLKKKMEGDLND 1631
Query: 152 INGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV 211
+ L A ++ + A ++ + +E GR + E++ A HEQ + +E+ +
Sbjct: 1632 LELQLGHATRQATEAQAATRLMQAQLKEEQAGR---DEEQRLAAELHEQAQALERRASLL 1688
Query: 212 AQQIERLQAELANAEKRARAA 232
A ++E L+A L E+ R A
Sbjct: 1689 AAELEELRAALEQGERSRRLA 1709
>sp|Q9ULD2|MTUS1_HUMAN Microtubule-associated tumor suppressor 1 OS=Homo sapiens GN=MTUS1
PE=1 SV=2
Length = 1270
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 17/200 (8%)
Query: 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYE------KS 111
IQ LL + + H L QEL EL S+ ++ R+ E++ +YE ++
Sbjct: 940 IQHLLSEREEALKQHKTLSQELVNLRGELVTASTTCEKLEKARN-ELQTVYEAFVQQHQA 998
Query: 112 LKLDAELRVIESMHAELDRVR----ADIEKLCVIKQEMIKDLNEI--NGDLAKARDESKD 165
K + E R+ E E +++R + EK + QE +LN L S+
Sbjct: 999 EKTERENRLKEFYTREYEKLRDTYIEEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEK 1058
Query: 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASN-HEQREIMEKNIISVAQQIERLQAELAN 224
+ +K E EI KG E EKK+ E++E +EK I + + + L +L +
Sbjct: 1059 LELLKKAYEASLSEIKKGH---EIEKKSLEDLLSEKQESLEKQINDLKSENDALNEKLKS 1115
Query: 225 AEKRARAAAAAAAVNPSTSY 244
E++ RA A NP Y
Sbjct: 1116 EEQKRRAREKANLKNPQIMY 1135
>sp|P14732|LMNB2_CHICK Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1
Length = 600
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 20 MSGRRVLREP---PLS-TRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATHVAL 75
MSG + P PLS TR Q L L DR+A+ +++L +N RL ++
Sbjct: 1 MSGTPIRGTPGGTPLSPTRISRLQEKEELRQLNDRLAVYIDRVRALELENDRLL-VKISE 59
Query: 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135
K+E++ R +S + + LYE L DA RV++ E R++ +I
Sbjct: 60 KEEVTT-----REVSGI------------KNLYESELA-DAR-RVLDETAKERARLQIEI 100
Query: 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190
KL +E K + + DL+ A+ KD+ + E E + + ++E E
Sbjct: 101 GKLRAELEEFNKSYKKKDADLSVAQGRIKDLEVLFHRSEAELNTVLNEKRSLEAE 155
>sp|P48675|DESM_RAT Desmin OS=Rattus norvegicus GN=Des PE=1 SV=2
Length = 469
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQE-----LSLAEQELRHL-------SS 91
L L DR A ++ L Q N LAA LK L E+E+R L ++
Sbjct: 111 LQELNDRFANYFEKVRFLEQQNAALAAEVNRLKGREPTRVAELYEEEMRELRRQVEVLTN 170
Query: 92 VAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151
A V ERD + +L KL E+++ E L RAD++ + + ++ + +
Sbjct: 171 QRARVDVERDNLIDDLQRLKAKLQEEIQLREEAENNLAAFRADVDAATLARIDLERRIES 230
Query: 152 INGDLA 157
+N ++A
Sbjct: 231 LNEEIA 236
>sp|Q5R9I1|MTUS1_PONAB Microtubule-associated tumor suppressor 1 homolog OS=Pongo abelii
GN=MTUS1 PE=2 SV=1
Length = 1270
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 17/200 (8%)
Query: 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYE------KS 111
IQ LL + + H L QEL EL S+ ++ R+ E++ YE ++
Sbjct: 940 IQHLLSEREEALKQHKTLSQELVNLRGELVTASTTCEKLEEARN-ELQTAYEAFVQQHQA 998
Query: 112 LKLDAELRVIESMHAELDRVR----ADIEKLCVIKQEMIKDLNEI--NGDLAKARDESKD 165
K + E R+ E E +++R + EK + QE +LN L S+
Sbjct: 999 EKTERENRLKEFYTREYEKLRDTYIEEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEK 1058
Query: 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASN-HEQREIMEKNIISVAQQIERLQAELAN 224
+ +K E EI KG E EKK+ E++E +EK I + + + L +L +
Sbjct: 1059 VELLKKAYEASLSEIKKGH---EMEKKSLEDLLSEKQESLEKQISDLKSENDALNEKLKS 1115
Query: 225 AEKRARAAAAAAAVNPSTSY 244
E++ RA A NP Y
Sbjct: 1116 EEQKRRAREKANLKNPQIMY 1135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.126 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,057,530
Number of Sequences: 539616
Number of extensions: 3557809
Number of successful extensions: 22829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 1508
Number of HSP's that attempted gapping in prelim test: 19713
Number of HSP's gapped (non-prelim): 3936
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)