Query 023255
Match_columns 285
No_of_seqs 148 out of 164
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0933 Structural maintenance 100.0 1.8E-26 3.9E-31 238.0 25.1 210 2-227 620-864 (1174)
2 TIGR02169 SMC_prok_A chromosom 99.4 6.2E-11 1.3E-15 126.6 28.5 33 2-35 618-659 (1164)
3 COG1196 Smc Chromosome segrega 99.4 2.8E-10 6.1E-15 123.9 26.7 55 2-56 611-681 (1163)
4 KOG0996 Structural maintenance 98.9 2E-07 4.2E-12 99.6 22.2 34 3-36 714-759 (1293)
5 KOG0964 Structural maintenance 98.8 1.6E-06 3.5E-11 91.4 23.9 155 2-156 616-822 (1200)
6 TIGR02168 SMC_prok_B chromosom 98.7 1.7E-05 3.7E-10 84.8 27.9 11 20-30 643-653 (1179)
7 KOG0018 Structural maintenance 98.4 6E-05 1.3E-09 80.5 23.3 36 2-37 599-646 (1141)
8 TIGR02168 SMC_prok_B chromosom 98.4 0.00015 3.2E-09 77.7 24.9 56 3-60 621-688 (1179)
9 PF07888 CALCOCO1: Calcium bin 98.3 0.0012 2.7E-08 67.0 27.3 171 47-231 141-323 (546)
10 PRK11637 AmiB activator; Provi 98.1 0.0081 1.8E-07 59.2 30.0 75 135-209 172-246 (428)
11 PF09726 Macoilin: Transmembra 98.1 0.0022 4.7E-08 67.3 27.1 203 44-256 420-676 (697)
12 TIGR02169 SMC_prok_A chromosom 98.1 0.0022 4.8E-08 69.1 26.8 101 126-226 392-496 (1164)
13 KOG0250 DNA repair protein RAD 97.7 0.0098 2.1E-07 64.3 22.9 21 10-30 612-637 (1074)
14 PF00038 Filament: Intermediat 97.7 0.017 3.6E-07 54.2 22.3 104 70-173 47-151 (312)
15 PF08317 Spc7: Spc7 kinetochor 97.6 0.049 1.1E-06 52.1 25.0 110 119-228 156-266 (325)
16 PRK09039 hypothetical protein; 97.6 0.0052 1.1E-07 59.4 18.0 80 143-222 112-199 (343)
17 PRK11637 AmiB activator; Provi 97.6 0.089 1.9E-06 51.9 27.0 55 169-223 192-250 (428)
18 PF08317 Spc7: Spc7 kinetochor 97.6 0.011 2.4E-07 56.5 19.1 33 67-99 153-185 (325)
19 PRK03918 chromosome segregatio 97.5 0.048 1E-06 57.9 25.7 97 108-204 601-699 (880)
20 PF05701 WEMBL: Weak chloropla 97.5 0.051 1.1E-06 55.3 24.4 116 70-188 235-361 (522)
21 KOG0250 DNA repair protein RAD 97.5 0.041 8.9E-07 59.7 24.5 101 119-222 351-452 (1074)
22 PRK03918 chromosome segregatio 97.5 0.073 1.6E-06 56.5 26.0 66 113-178 225-290 (880)
23 PRK02224 chromosome segregatio 97.5 0.072 1.6E-06 56.8 25.8 25 71-95 207-231 (880)
24 TIGR00606 rad50 rad50. This fa 97.4 0.052 1.1E-06 60.7 23.9 106 121-226 890-1011(1311)
25 COG1196 Smc Chromosome segrega 97.2 0.16 3.4E-06 56.4 25.9 32 124-155 381-412 (1163)
26 KOG0971 Microtubule-associated 97.2 0.34 7.4E-06 52.1 26.2 183 44-226 233-430 (1243)
27 COG1340 Uncharacterized archae 97.2 0.15 3.3E-06 48.4 21.7 125 81-206 111-242 (294)
28 KOG0977 Nuclear envelope prote 97.2 0.24 5.3E-06 50.7 24.2 58 164-221 169-230 (546)
29 PRK02224 chromosome segregatio 97.1 0.15 3.3E-06 54.3 23.9 29 66-94 209-237 (880)
30 PF06818 Fez1: Fez1; InterPro 97.1 0.1 2.2E-06 47.1 19.0 100 123-222 70-200 (202)
31 PHA02562 46 endonuclease subun 97.1 0.23 5.1E-06 49.9 23.8 22 167-188 302-323 (562)
32 PF00038 Filament: Intermediat 97.1 0.24 5.1E-06 46.4 21.9 127 46-189 8-142 (312)
33 PF07888 CALCOCO1: Calcium bin 97.1 0.23 4.9E-06 50.9 23.0 158 60-232 280-464 (546)
34 COG1579 Zn-ribbon protein, pos 97.1 0.065 1.4E-06 49.6 17.5 37 58-94 12-48 (239)
35 PF14662 CCDC155: Coiled-coil 97.1 0.21 4.6E-06 44.7 20.5 106 121-226 69-185 (193)
36 TIGR00606 rad50 rad50. This fa 97.0 0.31 6.8E-06 54.7 25.6 57 175-233 1051-1107(1311)
37 smart00787 Spc7 Spc7 kinetocho 97.0 0.12 2.6E-06 49.5 19.1 33 61-93 163-195 (312)
38 KOG0161 Myosin class II heavy 96.9 0.48 1E-05 54.9 26.3 37 58-94 980-1016(1930)
39 COG4372 Uncharacterized protei 96.9 0.49 1.1E-05 46.7 24.3 156 59-221 112-281 (499)
40 PRK04778 septation ring format 96.9 0.15 3.3E-06 52.3 20.6 154 75-228 254-419 (569)
41 KOG1029 Endocytic adaptor prot 96.9 0.081 1.8E-06 55.9 18.1 124 68-191 435-558 (1118)
42 PF14662 CCDC155: Coiled-coil 96.9 0.32 6.8E-06 43.6 21.8 155 47-201 20-188 (193)
43 PF07798 DUF1640: Protein of u 96.9 0.27 5.8E-06 43.1 19.0 61 122-182 94-156 (177)
44 PF05701 WEMBL: Weak chloropla 96.9 0.41 8.8E-06 48.8 23.0 44 119-162 309-352 (522)
45 KOG0161 Myosin class II heavy 96.8 0.32 7E-06 56.3 24.1 63 166-228 1064-1126(1930)
46 PF10174 Cast: RIM-binding pro 96.8 0.65 1.4E-05 49.7 24.7 167 59-226 367-582 (775)
47 PHA02562 46 endonuclease subun 96.7 0.39 8.5E-06 48.3 21.8 48 170-217 350-397 (562)
48 KOG0977 Nuclear envelope prote 96.7 0.39 8.5E-06 49.2 21.4 131 57-191 114-262 (546)
49 KOG0980 Actin-binding protein 96.7 0.95 2.1E-05 48.6 24.2 113 102-214 424-544 (980)
50 KOG0933 Structural maintenance 96.6 0.46 9.9E-06 51.7 21.9 30 164-193 850-879 (1174)
51 PRK09039 hypothetical protein; 96.6 0.49 1.1E-05 45.8 20.7 40 121-160 125-164 (343)
52 COG1579 Zn-ribbon protein, pos 96.6 0.46 1E-05 44.0 19.4 82 105-190 69-150 (239)
53 PF10168 Nup88: Nuclear pore c 96.6 0.56 1.2E-05 49.8 22.3 62 166-227 648-713 (717)
54 PF12128 DUF3584: Protein of u 96.6 1.6 3.4E-05 48.9 26.8 128 68-195 254-383 (1201)
55 PF04849 HAP1_N: HAP1 N-termin 96.6 0.55 1.2E-05 45.0 20.1 163 57-226 83-268 (306)
56 COG4942 Membrane-bound metallo 96.6 0.94 2E-05 45.1 28.4 47 47-93 43-89 (420)
57 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.37 8.1E-06 40.2 16.7 76 121-203 54-130 (132)
58 PF10473 CENP-F_leu_zip: Leuci 96.5 0.26 5.6E-06 42.1 15.7 43 57-99 11-53 (140)
59 KOG0996 Structural maintenance 96.5 0.97 2.1E-05 49.9 23.3 33 124-156 477-509 (1293)
60 PF10473 CENP-F_leu_zip: Leuci 96.4 0.49 1.1E-05 40.4 18.9 63 119-181 45-107 (140)
61 KOG0995 Centromere-associated 96.4 0.57 1.2E-05 48.1 20.2 147 72-226 215-366 (581)
62 PRK04863 mukB cell division pr 96.4 1.3 2.9E-05 50.5 25.2 106 121-226 357-476 (1486)
63 TIGR01843 type_I_hlyD type I s 96.4 0.41 9E-06 45.9 18.7 27 200-226 247-273 (423)
64 PLN03229 acetyl-coenzyme A car 96.3 0.35 7.5E-06 51.2 18.3 79 145-225 647-731 (762)
65 PF12128 DUF3584: Protein of u 96.3 1.8 3.9E-05 48.4 25.1 65 165-229 726-794 (1201)
66 KOG4674 Uncharacterized conser 96.3 1.6 3.5E-05 50.3 24.6 87 142-228 800-887 (1822)
67 PF05483 SCP-1: Synaptonemal c 96.3 1.9 4.1E-05 45.4 23.6 168 48-224 519-686 (786)
68 PF06160 EzrA: Septation ring 96.3 1.2 2.6E-05 45.9 22.0 118 114-232 294-415 (560)
69 PF09726 Macoilin: Transmembra 96.3 0.34 7.3E-06 51.2 18.3 34 121-154 483-516 (697)
70 COG5185 HEC1 Protein involved 96.2 0.75 1.6E-05 46.5 19.5 149 72-231 251-407 (622)
71 KOG1853 LIS1-interacting prote 96.2 1.1 2.3E-05 42.1 20.3 15 212-226 170-184 (333)
72 PF13514 AAA_27: AAA domain 96.2 2.8 6E-05 46.5 25.9 132 57-188 161-327 (1111)
73 PF10174 Cast: RIM-binding pro 96.2 2.4 5.1E-05 45.5 25.6 180 44-223 289-489 (775)
74 PF00261 Tropomyosin: Tropomyo 96.2 1 2.2E-05 41.2 21.5 107 119-226 92-217 (237)
75 smart00787 Spc7 Spc7 kinetocho 96.1 1.3 2.9E-05 42.4 20.8 107 121-227 153-260 (312)
76 PF06818 Fez1: Fez1; InterPro 96.1 0.23 5.1E-06 44.8 14.1 21 205-225 130-150 (202)
77 KOG2129 Uncharacterized conser 96.1 1.5 3.3E-05 43.7 20.7 126 97-222 153-305 (552)
78 TIGR01000 bacteriocin_acc bact 96.1 1.7 3.7E-05 43.2 22.2 25 165-189 237-261 (457)
79 KOG4809 Rab6 GTPase-interactin 96.1 1.2 2.6E-05 45.7 20.3 154 57-210 332-509 (654)
80 PF15619 Lebercilin: Ciliary p 96.1 0.93 2E-05 40.6 17.8 70 119-188 118-188 (194)
81 PF04156 IncA: IncA protein; 96.0 0.53 1.2E-05 41.0 15.8 32 67-98 78-109 (191)
82 KOG4674 Uncharacterized conser 96.0 0.82 1.8E-05 52.6 20.7 134 45-188 734-868 (1822)
83 PF04111 APG6: Autophagy prote 96.0 0.12 2.7E-06 49.4 12.6 93 124-219 41-133 (314)
84 TIGR02680 conserved hypothetic 96.0 3.4 7.3E-05 46.9 25.3 18 44-61 744-761 (1353)
85 PF00261 Tropomyosin: Tropomyo 95.9 1.3 2.8E-05 40.5 19.8 102 122-223 123-228 (237)
86 PRK01156 chromosome segregatio 95.9 2.8 6.1E-05 45.0 23.8 77 113-189 623-699 (895)
87 PF12718 Tropomyosin_1: Tropom 95.9 0.98 2.1E-05 38.5 16.6 29 130-158 32-60 (143)
88 KOG0612 Rho-associated, coiled 95.8 2.6 5.6E-05 46.9 22.7 64 163-226 587-650 (1317)
89 KOG0995 Centromere-associated 95.7 1.3 2.7E-05 45.7 18.9 42 107-151 285-326 (581)
90 PF12325 TMF_TATA_bd: TATA ele 95.7 0.45 9.8E-06 39.6 13.2 40 44-83 18-57 (120)
91 TIGR02680 conserved hypothetic 95.7 4.6 0.0001 45.9 25.1 96 65-160 225-324 (1353)
92 PRK04863 mukB cell division pr 95.7 5 0.00011 46.1 25.2 103 121-223 371-480 (1486)
93 KOG0979 Structural maintenance 95.7 2.1 4.6E-05 46.7 21.0 105 115-226 251-359 (1072)
94 PF12325 TMF_TATA_bd: TATA ele 95.6 0.66 1.4E-05 38.6 13.6 72 113-187 20-91 (120)
95 KOG4603 TBP-1 interacting prot 95.5 0.55 1.2E-05 41.6 13.5 96 126-222 79-178 (201)
96 PF15070 GOLGA2L5: Putative go 95.5 3.4 7.3E-05 43.3 21.6 29 174-202 163-191 (617)
97 PF09789 DUF2353: Uncharacteri 95.5 1.2 2.7E-05 42.9 16.9 120 63-182 79-207 (319)
98 KOG0964 Structural maintenance 95.4 3.8 8.3E-05 44.8 21.8 167 44-233 330-501 (1200)
99 PF05911 DUF869: Plant protein 95.4 4 8.7E-05 43.8 22.1 108 106-216 593-718 (769)
100 PF09730 BicD: Microtubule-ass 95.4 1.5 3.1E-05 46.7 18.6 106 119-224 69-181 (717)
101 PF08614 ATG16: Autophagy prot 95.4 0.13 2.7E-06 45.7 9.4 45 168-218 148-192 (194)
102 TIGR03185 DNA_S_dndD DNA sulfu 95.3 1.4 3E-05 45.9 18.3 81 68-160 389-469 (650)
103 TIGR03017 EpsF chain length de 95.3 3.1 6.8E-05 40.7 20.1 40 143-182 257-300 (444)
104 PF04111 APG6: Autophagy prote 95.3 0.3 6.6E-06 46.7 12.2 29 167-195 109-137 (314)
105 PF12718 Tropomyosin_1: Tropom 95.2 1.7 3.6E-05 37.1 17.4 18 144-161 77-94 (143)
106 PF09787 Golgin_A5: Golgin sub 95.2 3.8 8.2E-05 41.7 20.6 13 212-224 368-380 (511)
107 PRK04778 septation ring format 95.2 4.4 9.5E-05 41.7 24.6 52 174-226 451-503 (569)
108 PF13851 GAS: Growth-arrest sp 95.1 1.3 2.7E-05 39.9 15.1 59 166-224 102-168 (201)
109 PF09755 DUF2046: Uncharacteri 95.1 3.3 7.1E-05 39.8 19.3 55 136-190 225-280 (310)
110 PF09755 DUF2046: Uncharacteri 95.1 3.3 7.2E-05 39.8 26.8 24 208-231 231-254 (310)
111 COG4942 Membrane-bound metallo 95.1 4.1 8.8E-05 40.7 25.5 51 49-99 38-88 (420)
112 KOG4643 Uncharacterized coiled 95.1 6.7 0.00014 43.1 24.5 50 47-96 413-462 (1195)
113 TIGR03007 pepcterm_ChnLen poly 95.0 1.9 4.1E-05 43.1 17.6 55 44-98 170-232 (498)
114 COG0419 SbcC ATPase involved i 95.0 6.4 0.00014 42.7 24.7 75 147-225 274-348 (908)
115 KOG4673 Transcription factor T 95.0 5.8 0.00012 42.1 21.3 17 211-227 585-601 (961)
116 PF08647 BRE1: BRE1 E3 ubiquit 95.0 0.58 1.3E-05 37.2 11.1 88 123-217 7-94 (96)
117 KOG0963 Transcription factor/C 95.0 2 4.4E-05 44.6 17.6 36 138-173 290-326 (629)
118 COG2433 Uncharacterized conser 95.0 0.44 9.6E-06 49.3 12.9 100 121-221 431-531 (652)
119 PF08826 DMPK_coil: DMPK coile 94.9 0.38 8.2E-06 35.5 9.1 37 114-150 6-42 (61)
120 TIGR01843 type_I_hlyD type I s 94.9 3.8 8.2E-05 39.3 21.2 28 201-228 241-268 (423)
121 PF15035 Rootletin: Ciliary ro 94.9 2.6 5.6E-05 37.4 18.9 156 63-225 9-178 (182)
122 TIGR01000 bacteriocin_acc bact 94.8 4.7 0.0001 40.1 21.5 23 163-185 242-264 (457)
123 PF15619 Lebercilin: Ciliary p 94.8 2.9 6.2E-05 37.5 21.4 25 44-68 14-38 (194)
124 PF10146 zf-C4H2: Zinc finger- 94.8 2 4.2E-05 39.6 15.5 56 121-179 48-103 (230)
125 KOG0982 Centrosomal protein Nu 94.7 5.3 0.00011 40.1 20.0 51 45-95 218-268 (502)
126 COG5185 HEC1 Protein involved 94.7 2.9 6.3E-05 42.4 17.4 71 118-188 329-399 (622)
127 PF11559 ADIP: Afadin- and alp 94.5 2.5 5.5E-05 35.7 18.4 31 62-92 51-81 (151)
128 PF15294 Leu_zip: Leucine zipp 94.5 4.5 9.7E-05 38.4 20.2 56 163-228 189-244 (278)
129 PF10498 IFT57: Intra-flagella 94.5 4.3 9.4E-05 39.7 18.0 64 121-184 282-348 (359)
130 PF11932 DUF3450: Protein of u 94.5 1.9 4.1E-05 39.6 14.9 91 133-226 42-144 (251)
131 TIGR01005 eps_transp_fam exopo 94.5 4.1 8.9E-05 43.0 19.2 27 65-91 196-222 (754)
132 PF09730 BicD: Microtubule-ass 94.4 8.3 0.00018 41.1 23.6 50 137-186 363-413 (717)
133 PRK09841 cryptic autophosphory 94.4 1.5 3.2E-05 46.4 15.7 36 65-100 262-297 (726)
134 KOG0962 DNA repair protein RAD 94.3 11 0.00024 42.6 22.4 167 44-222 167-334 (1294)
135 PF13851 GAS: Growth-arrest sp 94.2 4 8.6E-05 36.7 18.7 96 122-217 44-139 (201)
136 KOG0018 Structural maintenance 94.2 8.7 0.00019 42.4 20.8 170 44-222 162-347 (1141)
137 PF13514 AAA_27: AAA domain 94.2 11 0.00025 41.7 24.4 44 147-190 784-827 (1111)
138 PF05667 DUF812: Protein of un 94.1 8.5 0.00018 40.2 21.1 22 202-223 487-508 (594)
139 PF04156 IncA: IncA protein; 94.1 2.2 4.8E-05 37.1 14.0 22 163-184 129-150 (191)
140 KOG0999 Microtubule-associated 94.1 6.5 0.00014 40.7 18.7 37 64-100 44-80 (772)
141 KOG4643 Uncharacterized coiled 94.1 4.8 0.0001 44.2 18.5 110 44-153 172-291 (1195)
142 KOG1029 Endocytic adaptor prot 94.1 8.7 0.00019 41.3 19.9 42 167-208 482-523 (1118)
143 KOG4807 F-actin binding protei 94.0 4.8 0.0001 40.1 17.1 108 109-222 439-574 (593)
144 TIGR03007 pepcterm_ChnLen poly 94.0 7.2 0.00016 38.9 20.0 102 123-228 251-377 (498)
145 PF08614 ATG16: Autophagy prot 94.0 0.25 5.3E-06 43.8 7.7 81 122-202 70-154 (194)
146 KOG2129 Uncharacterized conser 94.0 7.5 0.00016 39.0 22.6 137 68-220 163-323 (552)
147 PF15070 GOLGA2L5: Putative go 94.0 9.3 0.0002 40.1 22.4 95 45-150 90-191 (617)
148 COG1340 Uncharacterized archae 94.0 6 0.00013 37.8 25.3 74 142-222 133-209 (294)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.9 3.3 7.1E-05 34.5 18.3 63 117-179 57-120 (132)
150 COG4477 EzrA Negative regulato 93.8 7.5 0.00016 40.0 18.5 114 114-227 297-410 (570)
151 KOG0612 Rho-associated, coiled 93.8 11 0.00024 42.2 20.8 6 10-15 400-405 (1317)
152 PF10168 Nup88: Nuclear pore c 93.8 4.1 8.9E-05 43.4 17.5 13 3-15 451-464 (717)
153 PF05622 HOOK: HOOK protein; 93.7 0.018 4E-07 60.4 0.0 114 104-224 303-416 (713)
154 PRK10884 SH3 domain-containing 93.6 0.93 2E-05 41.0 10.8 28 73-100 89-116 (206)
155 PF10186 Atg14: UV radiation r 93.5 2.9 6.3E-05 38.3 14.2 52 134-188 57-108 (302)
156 PRK10884 SH3 domain-containing 93.5 1.9 4E-05 39.1 12.5 32 124-155 137-168 (206)
157 PRK06569 F0F1 ATP synthase sub 93.3 3.2 7E-05 36.1 13.1 91 113-209 45-138 (155)
158 PF05557 MAD: Mitotic checkpoi 93.3 0.024 5.2E-07 59.6 0.0 25 196-220 254-278 (722)
159 TIGR00634 recN DNA repair prot 93.3 4.6 0.0001 41.4 16.5 59 163-225 321-379 (563)
160 PF04626 DEC-1_C: Dec-1 protei 93.3 0.051 1.1E-06 45.1 1.9 29 241-271 74-102 (132)
161 COG0419 SbcC ATPase involved i 93.2 15 0.00032 39.9 26.0 161 68-229 272-440 (908)
162 PF07111 HCR: Alpha helical co 93.2 13 0.00029 39.3 19.5 51 140-190 162-216 (739)
163 PF06785 UPF0242: Uncharacteri 93.1 6.3 0.00014 38.4 15.9 37 123-159 138-174 (401)
164 TIGR02977 phageshock_pspA phag 93.1 6.5 0.00014 35.5 21.4 105 46-160 28-133 (219)
165 TIGR02971 heterocyst_DevB ABC 93.1 7.8 0.00017 36.3 17.4 19 207-225 187-205 (327)
166 PRK03947 prefoldin subunit alp 93.0 1.7 3.7E-05 36.2 10.9 46 182-227 91-136 (140)
167 KOG4593 Mitotic checkpoint pro 93.0 14 0.0003 39.1 26.0 60 163-222 250-315 (716)
168 PF10234 Cluap1: Clusterin-ass 93.0 2.5 5.4E-05 39.8 12.9 65 120-184 170-238 (267)
169 PRK11519 tyrosine kinase; Prov 92.9 3.4 7.5E-05 43.6 15.4 33 68-100 265-297 (719)
170 PF10234 Cluap1: Clusterin-ass 92.9 5.6 0.00012 37.5 15.1 97 68-178 160-260 (267)
171 PF11559 ADIP: Afadin- and alp 92.9 5.2 0.00011 33.8 16.8 28 61-88 43-70 (151)
172 KOG0963 Transcription factor/C 92.9 14 0.0003 38.7 24.3 95 127-224 236-342 (629)
173 PF00769 ERM: Ezrin/radixin/mo 92.8 8 0.00017 35.7 18.4 110 46-162 9-118 (246)
174 PF01576 Myosin_tail_1: Myosin 92.8 0.031 6.8E-07 60.1 0.0 106 125-230 524-633 (859)
175 PF10186 Atg14: UV radiation r 92.8 7.7 0.00017 35.5 17.5 36 121-156 72-107 (302)
176 PF05557 MAD: Mitotic checkpoi 92.8 0.031 6.8E-07 58.7 0.0 101 122-222 195-321 (722)
177 PF09787 Golgin_A5: Golgin sub 92.7 13 0.00028 37.9 23.0 109 80-188 158-298 (511)
178 PF06160 EzrA: Septation ring 92.7 14 0.00029 38.2 25.9 82 145-226 250-333 (560)
179 PF07798 DUF1640: Protein of u 92.7 6.4 0.00014 34.4 17.0 16 211-226 136-151 (177)
180 PF06008 Laminin_I: Laminin Do 92.6 8.3 0.00018 35.6 20.6 140 44-204 19-168 (264)
181 PF07246 Phlebovirus_NSM: Phle 92.6 3.9 8.4E-05 38.5 13.4 80 10-99 94-190 (264)
182 PF05911 DUF869: Plant protein 92.6 17 0.00038 39.1 22.5 59 51-109 4-77 (769)
183 PRK10361 DNA recombination pro 92.4 14 0.00031 37.6 22.9 98 133-233 99-208 (475)
184 COG4913 Uncharacterized protei 92.3 18 0.0004 38.8 22.5 28 198-225 775-802 (1104)
185 PLN03229 acetyl-coenzyme A car 92.2 10 0.00022 40.5 17.4 79 47-136 460-545 (762)
186 PF04912 Dynamitin: Dynamitin 92.2 9.1 0.0002 37.5 16.3 86 74-160 265-356 (388)
187 PF05667 DUF812: Protein of un 92.1 17 0.00037 38.0 19.9 44 141-184 420-467 (594)
188 TIGR03319 YmdA_YtgF conserved 92.1 16 0.00034 37.5 21.0 26 205-232 162-187 (514)
189 PF15450 DUF4631: Domain of un 92.1 16 0.00034 37.5 22.2 141 44-196 339-480 (531)
190 PF10481 CENP-F_N: Cenp-F N-te 92.1 5.5 0.00012 37.8 13.7 93 127-222 19-118 (307)
191 PF11932 DUF3450: Protein of u 92.1 6.1 0.00013 36.2 14.2 51 123-173 53-103 (251)
192 PF15290 Syntaphilin: Golgi-lo 92.1 7.9 0.00017 36.8 14.8 86 78-173 83-168 (305)
193 PF08172 CASP_C: CASP C termin 92.0 4.5 9.8E-05 37.6 13.2 43 188-230 89-131 (248)
194 PF15294 Leu_zip: Leucine zipp 92.0 11 0.00025 35.7 16.2 80 141-222 191-276 (278)
195 COG4372 Uncharacterized protei 92.0 14 0.00031 36.8 23.4 44 178-221 189-232 (499)
196 PRK10361 DNA recombination pro 91.9 16 0.00035 37.2 18.1 83 111-193 45-128 (475)
197 PF14197 Cep57_CLD_2: Centroso 91.9 2.6 5.6E-05 31.8 9.4 62 121-185 7-68 (69)
198 KOG1937 Uncharacterized conser 91.8 16 0.00035 37.0 20.4 41 118-158 388-428 (521)
199 KOG0976 Rho/Rac1-interacting s 91.7 22 0.00048 38.6 19.0 64 44-107 94-157 (1265)
200 TIGR01005 eps_transp_fam exopo 91.7 20 0.00043 37.9 22.8 35 66-100 190-224 (754)
201 PF06810 Phage_GP20: Phage min 91.6 1.5 3.3E-05 37.9 9.0 67 122-188 9-75 (155)
202 PF07106 TBPIP: Tat binding pr 91.5 2.9 6.3E-05 36.0 10.7 63 121-185 74-137 (169)
203 PF10481 CENP-F_N: Cenp-F N-te 91.4 9.1 0.0002 36.3 14.4 65 122-189 63-127 (307)
204 KOG2264 Exostosin EXT1L [Signa 91.3 1.2 2.6E-05 46.1 9.2 61 118-188 78-138 (907)
205 PRK12704 phosphodiesterase; Pr 91.1 20 0.00044 36.8 19.7 27 204-232 167-193 (520)
206 PRK11546 zraP zinc resistance 90.8 1.7 3.8E-05 37.3 8.5 41 147-187 72-112 (143)
207 COG1730 GIM5 Predicted prefold 90.8 5.9 0.00013 34.1 11.7 50 182-231 91-140 (145)
208 KOG0994 Extracellular matrix g 90.7 33 0.00073 38.7 19.9 51 65-115 1452-1505(1758)
209 PF08172 CASP_C: CASP C termin 90.7 2.1 4.6E-05 39.8 9.7 41 164-204 93-133 (248)
210 KOG0980 Actin-binding protein 90.7 29 0.00062 37.9 26.7 16 57-72 348-363 (980)
211 PF14362 DUF4407: Domain of un 90.7 13 0.00029 34.7 15.3 61 146-206 188-253 (301)
212 KOG4807 F-actin binding protei 90.7 20 0.00042 35.9 20.1 25 202-226 515-539 (593)
213 PF13094 CENP-Q: CENP-Q, a CEN 90.6 9.9 0.00022 32.4 13.8 34 63-96 20-53 (160)
214 KOG0994 Extracellular matrix g 90.6 35 0.00075 38.6 23.2 38 195-232 1706-1743(1758)
215 TIGR03794 NHPM_micro_HlyD NHPM 90.6 18 0.0004 35.4 17.7 23 201-223 229-251 (421)
216 KOG0249 LAR-interacting protei 90.6 19 0.00042 38.5 17.2 19 44-62 93-111 (916)
217 KOG2991 Splicing regulator [RN 90.5 16 0.00034 34.6 24.4 106 122-227 180-299 (330)
218 PF02403 Seryl_tRNA_N: Seryl-t 90.5 3.6 7.8E-05 32.7 9.7 66 114-186 24-89 (108)
219 PF10498 IFT57: Intra-flagella 90.5 12 0.00027 36.6 15.1 100 129-228 237-350 (359)
220 TIGR01010 BexC_CtrB_KpsE polys 90.4 17 0.00037 34.8 17.0 96 70-187 170-265 (362)
221 PF03962 Mnd1: Mnd1 family; I 90.4 5.3 0.00012 35.5 11.6 51 137-187 107-158 (188)
222 PF06705 SF-assemblin: SF-asse 90.3 14 0.00031 33.8 17.9 131 82-224 3-139 (247)
223 PRK03598 putative efflux pump 90.3 8.3 0.00018 36.4 13.5 22 205-226 184-205 (331)
224 KOG1853 LIS1-interacting prote 90.2 17 0.00036 34.4 17.9 49 73-121 55-103 (333)
225 KOG2391 Vacuolar sorting prote 90.1 1.3 2.8E-05 43.0 7.9 48 166-213 248-295 (365)
226 PRK00106 hypothetical protein; 90.0 26 0.00056 36.3 19.8 27 205-233 183-209 (535)
227 PF10211 Ax_dynein_light: Axon 89.9 14 0.0003 32.9 14.7 66 121-188 122-187 (189)
228 PRK10869 recombination and rep 89.9 21 0.00045 36.8 16.9 67 154-224 306-373 (553)
229 PF14197 Cep57_CLD_2: Centroso 89.8 5.2 0.00011 30.1 9.4 41 67-107 2-42 (69)
230 KOG0999 Microtubule-associated 89.8 19 0.00042 37.4 16.2 60 163-222 186-252 (772)
231 COG1842 PspA Phage shock prote 89.8 16 0.00035 33.5 16.7 110 119-230 31-144 (225)
232 PF14992 TMCO5: TMCO5 family 89.7 13 0.00028 35.4 14.0 25 196-221 158-182 (280)
233 COG0497 RecN ATPase involved i 89.6 23 0.0005 36.8 16.9 58 163-224 317-374 (557)
234 KOG0249 LAR-interacting protei 89.6 20 0.00043 38.3 16.4 11 107-117 161-171 (916)
235 PRK10698 phage shock protein P 89.5 16 0.00035 33.2 23.1 152 64-222 46-217 (222)
236 KOG0239 Kinesin (KAR3 subfamil 89.5 22 0.00048 37.7 17.0 81 121-208 236-316 (670)
237 PF07794 DUF1633: Protein of u 89.5 6.8 0.00015 40.1 12.6 116 105-229 593-721 (790)
238 PF12329 TMF_DNA_bd: TATA elem 89.4 6.7 0.00015 29.8 9.8 9 99-107 9-17 (74)
239 PF03962 Mnd1: Mnd1 family; I 89.2 8.1 0.00018 34.3 11.8 75 124-202 67-141 (188)
240 COG3883 Uncharacterized protei 89.2 20 0.00043 33.9 26.0 51 44-94 40-90 (265)
241 PRK10476 multidrug resistance 89.2 20 0.00044 34.0 15.5 18 16-33 40-57 (346)
242 PF10212 TTKRSYEDQ: Predicted 89.1 20 0.00043 36.9 15.7 93 121-226 422-514 (518)
243 KOG0288 WD40 repeat protein Ti 89.1 18 0.00039 36.3 14.9 47 106-155 45-91 (459)
244 PF01544 CorA: CorA-like Mg2+ 88.9 14 0.0003 33.4 13.5 87 163-249 150-259 (292)
245 KOG4360 Uncharacterized coiled 88.7 31 0.00068 35.5 17.8 72 107-184 231-302 (596)
246 TIGR01069 mutS2 MutS2 family p 88.7 28 0.00062 37.4 17.4 38 48-85 503-540 (771)
247 TIGR03185 DNA_S_dndD DNA sulfu 88.6 34 0.00073 35.8 24.9 35 57-91 217-251 (650)
248 KOG0946 ER-Golgi vesicle-tethe 88.5 41 0.00089 36.5 18.4 29 189-217 827-855 (970)
249 smart00806 AIP3 Actin interact 88.5 29 0.00063 34.8 19.6 154 76-229 154-326 (426)
250 PF07139 DUF1387: Protein of u 88.5 15 0.00033 35.3 13.6 97 57-175 154-254 (302)
251 PF12252 SidE: Dot/Icm substra 88.4 28 0.0006 38.9 16.9 137 72-222 1065-1223(1439)
252 cd00890 Prefoldin Prefoldin is 88.4 8.6 0.00019 31.0 10.7 35 188-222 90-124 (129)
253 COG1842 PspA Phage shock prote 88.4 20 0.00044 32.9 17.0 49 67-115 49-98 (225)
254 KOG0946 ER-Golgi vesicle-tethe 88.3 31 0.00066 37.5 16.8 42 53-94 734-775 (970)
255 KOG0239 Kinesin (KAR3 subfamil 88.1 39 0.00085 35.9 17.9 62 165-226 249-313 (670)
256 PF02050 FliJ: Flagellar FliJ 88.0 11 0.00023 29.2 10.7 86 121-206 7-94 (123)
257 PF02403 Seryl_tRNA_N: Seryl-t 88.0 5.3 0.00011 31.7 9.0 18 121-138 45-62 (108)
258 PF04012 PspA_IM30: PspA/IM30 88.0 19 0.00041 32.1 21.8 72 46-117 27-99 (221)
259 KOG0243 Kinesin-like protein [ 87.9 36 0.00079 37.8 17.6 96 119-231 455-550 (1041)
260 PF13805 Pil1: Eisosome compon 87.8 25 0.00054 33.3 15.1 63 127-193 132-194 (271)
261 KOG0982 Centrosomal protein Nu 87.8 30 0.00065 34.9 15.5 15 187-201 365-379 (502)
262 PF03915 AIP3: Actin interacti 87.6 25 0.00055 35.3 15.2 119 76-194 150-276 (424)
263 PRK10476 multidrug resistance 87.5 24 0.00051 33.5 14.7 13 214-226 198-210 (346)
264 KOG0971 Microtubule-associated 87.5 50 0.0011 36.4 21.4 35 65-99 377-411 (1243)
265 PF14992 TMCO5: TMCO5 family 87.4 27 0.00058 33.2 16.2 30 65-94 13-42 (280)
266 PRK00409 recombination and DNA 87.4 31 0.00067 37.2 16.8 50 44-93 504-553 (782)
267 cd00632 Prefoldin_beta Prefold 87.4 13 0.00028 29.6 12.8 11 127-137 71-81 (105)
268 smart00503 SynN Syntaxin N-ter 87.2 13 0.00028 29.3 11.8 64 118-181 7-74 (117)
269 PRK10246 exonuclease subunit S 87.2 54 0.0012 36.4 25.2 11 50-60 531-541 (1047)
270 KOG0978 E3 ubiquitin ligase in 87.2 45 0.00099 35.6 21.7 36 63-98 482-517 (698)
271 PF08826 DMPK_coil: DMPK coile 87.1 5.7 0.00012 29.3 7.9 35 125-159 24-58 (61)
272 TIGR03752 conj_TIGR03752 integ 87.1 17 0.00036 37.0 13.7 41 44-84 61-101 (472)
273 PF07106 TBPIP: Tat binding pr 87.1 6 0.00013 34.1 9.4 67 125-192 71-137 (169)
274 PF06120 Phage_HK97_TLTM: Tail 87.0 12 0.00027 35.8 12.2 24 164-187 81-104 (301)
275 PRK09343 prefoldin subunit bet 87.0 16 0.00034 30.1 13.5 40 121-160 73-112 (121)
276 cd07632 BAR_APPL2 The Bin/Amph 86.9 25 0.00053 32.2 14.5 113 47-180 7-121 (215)
277 KOG4687 Uncharacterized coiled 86.8 30 0.00065 33.1 16.6 86 67-162 48-133 (389)
278 KOG3478 Prefoldin subunit 6, K 86.7 17 0.00037 30.1 11.9 28 109-136 26-53 (120)
279 PF05622 HOOK: HOOK protein; 86.7 0.2 4.4E-06 52.7 0.0 148 68-226 237-397 (713)
280 PF12252 SidE: Dot/Icm substra 86.5 37 0.0008 38.0 16.5 40 184-224 1270-1309(1439)
281 PF05266 DUF724: Protein of un 86.5 15 0.00032 32.8 11.8 34 198-231 151-184 (190)
282 TIGR03017 EpsF chain length de 86.5 34 0.00074 33.5 18.0 28 71-98 172-199 (444)
283 KOG3433 Protein involved in me 86.4 3.5 7.5E-05 37.0 7.5 64 163-226 80-143 (203)
284 PF14915 CCDC144C: CCDC144C pr 86.3 32 0.0007 33.0 16.4 123 51-187 36-160 (305)
285 KOG0804 Cytoplasmic Zn-finger 86.2 41 0.00089 34.1 16.8 11 46-56 325-335 (493)
286 COG5293 Predicted ATPase [Gene 86.2 42 0.00092 34.3 15.7 99 86-190 325-432 (591)
287 KOG0978 E3 ubiquitin ligase in 86.1 52 0.0011 35.2 19.8 153 60-226 486-641 (698)
288 KOG4677 Golgi integral membran 86.1 42 0.00092 34.1 19.3 134 65-209 201-347 (554)
289 KOG4637 Adaptor for phosphoino 85.9 39 0.00085 33.6 17.7 139 44-186 134-284 (464)
290 PRK14001 potassium-transportin 85.9 1.2 2.6E-05 40.0 4.4 37 3-43 50-93 (189)
291 COG1730 GIM5 Predicted prefold 85.7 22 0.00048 30.6 12.0 42 119-160 94-135 (145)
292 KOG0962 DNA repair protein RAD 85.7 72 0.0016 36.4 21.5 50 113-162 872-921 (1294)
293 PRK12704 phosphodiesterase; Pr 85.5 47 0.001 34.1 17.7 60 145-204 91-150 (520)
294 TIGR02338 gimC_beta prefoldin, 85.5 17 0.00038 29.2 13.0 35 122-156 70-104 (110)
295 PRK05431 seryl-tRNA synthetase 85.4 5.3 0.00012 39.8 9.3 34 118-151 27-60 (425)
296 KOG4572 Predicted DNA-binding 85.3 50 0.0011 36.1 16.4 20 71-90 962-981 (1424)
297 PF09789 DUF2353: Uncharacteri 85.3 38 0.00082 32.8 19.3 38 122-159 75-112 (319)
298 PF09304 Cortex-I_coil: Cortex 85.1 20 0.00042 29.4 12.1 31 124-154 21-51 (107)
299 TIGR00414 serS seryl-tRNA synt 85.1 8.5 0.00019 38.2 10.5 34 118-151 29-62 (418)
300 cd07651 F-BAR_PombeCdc15_like 85.0 21 0.00046 32.2 12.4 103 124-226 58-163 (236)
301 PF04012 PspA_IM30: PspA/IM30 85.0 28 0.0006 31.0 18.8 27 73-99 26-52 (221)
302 KOG4403 Cell surface glycoprot 84.8 16 0.00034 36.9 12.0 107 109-219 242-374 (575)
303 COG3206 GumC Uncharacterized p 84.8 32 0.00069 34.2 14.5 48 142-189 344-391 (458)
304 PF04849 HAP1_N: HAP1 N-termin 84.6 39 0.00086 32.5 20.2 95 63-160 104-226 (306)
305 PF08647 BRE1: BRE1 E3 ubiquit 84.5 18 0.00039 28.6 11.4 41 166-206 54-94 (96)
306 KOG0993 Rab5 GTPase effector R 84.4 48 0.0011 33.4 20.1 46 174-219 437-489 (542)
307 TIGR02231 conserved hypothetic 84.4 21 0.00046 36.2 13.2 43 119-161 131-173 (525)
308 PF05700 BCAS2: Breast carcino 84.3 30 0.00064 31.4 12.9 68 121-188 145-213 (221)
309 PF08581 Tup_N: Tup N-terminal 84.2 17 0.00037 28.1 9.7 40 121-160 6-45 (79)
310 PF14182 YgaB: YgaB-like prote 84.2 6.1 0.00013 30.6 7.0 40 149-189 26-65 (79)
311 PF07439 DUF1515: Protein of u 84.1 15 0.00033 30.2 9.7 72 68-160 6-77 (112)
312 KOG0243 Kinesin-like protein [ 84.1 76 0.0017 35.4 20.3 49 167-215 535-583 (1041)
313 PF04728 LPP: Lipoprotein leuc 84.0 9.1 0.0002 27.9 7.5 18 138-155 8-25 (56)
314 PF09744 Jnk-SapK_ap_N: JNK_SA 83.4 30 0.00064 30.1 15.0 9 145-153 101-109 (158)
315 KOG2991 Splicing regulator [RN 83.4 42 0.00091 31.8 16.0 57 137-193 254-314 (330)
316 KOG2264 Exostosin EXT1L [Signa 83.3 8.4 0.00018 40.1 9.6 63 118-183 85-147 (907)
317 PF09728 Taxilin: Myosin-like 83.3 44 0.00095 32.0 23.8 86 134-226 203-292 (309)
318 PRK11281 hypothetical protein; 83.3 86 0.0019 35.4 23.0 178 45-225 124-318 (1113)
319 TIGR02473 flagell_FliJ flagell 83.2 23 0.00051 28.8 11.8 43 164-206 68-110 (141)
320 KOG1962 B-cell receptor-associ 83.0 6.9 0.00015 35.8 8.1 28 164-191 186-213 (216)
321 PRK10929 putative mechanosensi 82.8 89 0.0019 35.2 23.4 85 138-222 206-295 (1109)
322 PF08581 Tup_N: Tup N-terminal 82.8 20 0.00043 27.7 11.5 44 53-96 8-51 (79)
323 PRK13729 conjugal transfer pil 82.6 4 8.8E-05 41.3 7.1 40 141-180 77-120 (475)
324 PF10146 zf-C4H2: Zinc finger- 82.6 40 0.00087 31.1 15.1 71 121-191 34-109 (230)
325 PRK10929 putative mechanosensi 82.5 92 0.002 35.1 18.1 21 75-95 213-233 (1109)
326 PF14817 HAUS5: HAUS augmin-li 82.2 22 0.00047 37.5 12.4 92 115-206 75-166 (632)
327 PF15290 Syntaphilin: Golgi-lo 82.2 28 0.0006 33.2 12.0 51 166-226 119-169 (305)
328 COG1322 Predicted nuclease of 82.2 61 0.0013 32.8 24.0 107 124-233 82-199 (448)
329 PF00769 ERM: Ezrin/radixin/mo 82.1 42 0.00091 31.0 14.7 14 213-226 103-116 (246)
330 PF09738 DUF2051: Double stran 82.1 49 0.0011 31.7 15.6 86 44-136 79-164 (302)
331 PF05266 DUF724: Protein of un 82.1 37 0.0008 30.3 14.8 56 130-188 128-183 (190)
332 KOG1962 B-cell receptor-associ 82.0 23 0.0005 32.4 11.1 57 166-222 153-209 (216)
333 PF05278 PEARLI-4: Arabidopsis 81.4 32 0.0007 32.5 12.1 43 118-160 199-241 (269)
334 PF13805 Pil1: Eisosome compon 81.3 50 0.0011 31.3 18.2 92 100-200 122-213 (271)
335 PRK13997 potassium-transportin 81.3 2.3 4.9E-05 38.3 4.3 35 3-43 54-95 (193)
336 PF12329 TMF_DNA_bd: TATA elem 81.2 14 0.0003 28.0 8.1 60 163-229 11-70 (74)
337 cd07657 F-BAR_Fes_Fer The F-BA 81.1 45 0.00097 30.6 18.9 97 122-221 115-230 (237)
338 TIGR00383 corA magnesium Mg(2+ 80.9 25 0.00054 32.8 11.4 12 241-252 275-287 (318)
339 COG0598 CorA Mg2+ and Co2+ tra 80.8 53 0.0011 31.2 14.0 91 163-253 179-292 (322)
340 PF05837 CENP-H: Centromere pr 80.7 28 0.00061 28.0 10.7 69 119-191 10-78 (106)
341 TIGR00293 prefoldin, archaeal 80.6 5 0.00011 32.7 5.9 39 184-222 85-123 (126)
342 PRK11519 tyrosine kinase; Prov 80.4 84 0.0018 33.3 18.6 113 65-189 269-388 (719)
343 PRK00315 potassium-transportin 80.1 2.4 5.2E-05 38.1 4.1 38 3-43 50-94 (193)
344 PF04799 Fzo_mitofusin: fzo-li 80.1 11 0.00025 33.2 8.2 43 143-185 123-165 (171)
345 PRK15178 Vi polysaccharide exp 79.9 72 0.0016 32.2 16.1 56 162-229 312-367 (434)
346 TIGR03794 NHPM_micro_HlyD NHPM 79.8 64 0.0014 31.6 17.7 22 206-227 227-248 (421)
347 TIGR02231 conserved hypothetic 79.7 41 0.00088 34.1 13.3 47 166-226 126-172 (525)
348 PRK00409 recombination and DNA 79.6 86 0.0019 33.8 16.2 16 166-181 579-594 (782)
349 PLN02678 seryl-tRNA synthetase 79.5 9.4 0.0002 38.5 8.5 32 120-151 34-65 (448)
350 PRK13995 potassium-transportin 79.5 3 6.5E-05 37.8 4.5 39 3-43 49-103 (203)
351 PF05529 Bap31: B-cell recepto 79.5 24 0.00051 30.9 10.2 17 166-182 156-172 (192)
352 TIGR02338 gimC_beta prefoldin, 79.1 32 0.00068 27.7 10.2 25 107-131 22-46 (110)
353 PF06637 PV-1: PV-1 protein (P 79.0 73 0.0016 31.8 17.4 147 85-257 264-442 (442)
354 KOG4460 Nuclear pore complex, 79.0 88 0.0019 32.8 15.9 20 197-216 710-729 (741)
355 PF12592 DUF3763: Protein of u 78.9 12 0.00026 27.2 6.6 54 167-220 3-56 (57)
356 TIGR03495 phage_LysB phage lys 78.8 39 0.00085 28.7 10.8 39 61-99 24-62 (135)
357 PF13870 DUF4201: Domain of un 78.6 43 0.00093 28.9 19.4 23 206-228 145-167 (177)
358 cd07598 BAR_FAM92 The Bin/Amph 78.5 52 0.0011 29.8 20.0 67 124-190 95-161 (211)
359 KOG4360 Uncharacterized coiled 78.4 77 0.0017 32.8 14.3 41 122-162 264-304 (596)
360 PF13863 DUF4200: Domain of un 78.4 34 0.00073 27.6 13.8 100 125-224 6-106 (126)
361 TIGR03545 conserved hypothetic 78.4 24 0.00051 36.6 11.1 30 68-98 176-205 (555)
362 PF05276 SH3BP5: SH3 domain-bi 78.3 58 0.0013 30.3 17.2 99 48-159 69-168 (239)
363 TIGR00681 kdpC K+-transporting 78.3 3.5 7.6E-05 36.9 4.5 38 3-43 48-92 (187)
364 KOG4603 TBP-1 interacting prot 77.7 50 0.0011 29.5 11.3 89 125-215 85-178 (201)
365 PF06005 DUF904: Protein of un 77.6 29 0.00062 26.3 9.7 43 118-160 17-59 (72)
366 TIGR02894 DNA_bind_RsfA transc 77.5 38 0.00082 29.7 10.5 64 157-220 90-153 (161)
367 PF15450 DUF4631: Domain of un 77.2 94 0.002 32.1 21.8 78 138-224 385-466 (531)
368 PF13166 AAA_13: AAA domain 77.2 97 0.0021 32.3 23.5 22 204-225 436-457 (712)
369 PF00804 Syntaxin: Syntaxin; 77.1 29 0.00063 26.2 10.3 22 120-141 8-29 (103)
370 PF05700 BCAS2: Breast carcino 77.1 57 0.0012 29.5 16.9 9 1-9 1-9 (221)
371 cd00584 Prefoldin_alpha Prefol 77.1 38 0.00083 27.5 10.5 37 186-222 88-124 (129)
372 PF09304 Cortex-I_coil: Cortex 76.9 40 0.00087 27.7 13.6 33 123-155 41-73 (107)
373 cd07653 F-BAR_CIP4-like The F- 76.8 57 0.0012 29.4 19.3 23 196-218 205-227 (251)
374 PLN02678 seryl-tRNA synthetase 76.8 19 0.0004 36.4 9.7 6 200-205 143-148 (448)
375 PF12072 DUF3552: Domain of un 76.8 55 0.0012 29.1 16.9 19 75-93 69-87 (201)
376 PF10153 DUF2361: Uncharacteri 76.5 42 0.00091 27.7 11.4 38 52-89 3-40 (114)
377 TIGR00634 recN DNA repair prot 76.4 96 0.0021 31.8 21.3 21 163-183 300-320 (563)
378 PF12777 MT: Microtubule-bindi 76.4 7.6 0.00016 37.4 6.6 71 119-189 214-288 (344)
379 TIGR03752 conj_TIGR03752 integ 76.3 42 0.00091 34.2 11.9 27 66-92 62-88 (472)
380 COG3352 FlaC Putative archaeal 76.1 29 0.00064 30.2 9.3 73 107-181 49-125 (157)
381 PF13870 DUF4201: Domain of un 76.1 51 0.0011 28.5 18.7 32 63-94 42-73 (177)
382 PF05010 TACC: Transforming ac 76.0 62 0.0013 29.4 21.1 59 118-176 96-155 (207)
383 TIGR03319 YmdA_YtgF conserved 75.9 1E+02 0.0022 31.7 17.7 44 145-188 85-128 (514)
384 PF07851 TMPIT: TMPIT-like pro 75.7 36 0.00078 33.1 10.9 58 125-186 3-61 (330)
385 PRK13729 conjugal transfer pil 75.7 9.7 0.00021 38.7 7.3 40 147-186 76-119 (475)
386 KOG3091 Nuclear pore complex, 75.6 86 0.0019 32.2 13.8 14 44-57 336-349 (508)
387 KOG4657 Uncharacterized conser 75.5 69 0.0015 29.7 15.0 105 80-187 18-123 (246)
388 PF07139 DUF1387: Protein of u 75.5 66 0.0014 31.0 12.5 97 122-225 156-255 (302)
389 PRK13453 F0F1 ATP synthase sub 75.5 50 0.0011 28.6 10.9 19 178-196 114-132 (173)
390 PRK11085 magnesium/nickel/coba 75.4 67 0.0015 30.8 12.7 32 194-225 209-240 (316)
391 cd07666 BAR_SNX7 The Bin/Amphi 75.4 70 0.0015 29.7 12.9 127 25-182 94-231 (243)
392 PF10191 COG7: Golgi complex c 75.4 1.2E+02 0.0027 32.6 19.2 132 57-213 57-188 (766)
393 PF06632 XRCC4: DNA double-str 75.3 44 0.00096 32.6 11.5 51 127-177 152-207 (342)
394 PF02183 HALZ: Homeobox associ 75.3 15 0.00032 25.4 6.0 36 121-156 7-42 (45)
395 cd07648 F-BAR_FCHO The F-BAR ( 75.2 67 0.0014 29.4 12.3 103 124-227 58-164 (261)
396 PRK00578 prfB peptide chain re 75.2 59 0.0013 32.1 12.4 19 208-226 93-112 (367)
397 PRK10246 exonuclease subunit S 75.1 1.4E+02 0.0031 33.2 23.6 13 44-56 182-194 (1047)
398 KOG0972 Huntingtin interacting 75.1 83 0.0018 30.5 13.4 63 124-186 292-357 (384)
399 PRK11546 zraP zinc resistance 75.1 51 0.0011 28.3 10.6 52 65-137 56-107 (143)
400 PRK13999 potassium-transportin 75.0 5 0.00011 36.3 4.6 39 3-43 50-105 (201)
401 PF05008 V-SNARE: Vesicle tran 75.0 32 0.00069 25.6 8.5 19 163-181 60-78 (79)
402 PF06248 Zw10: Centromere/kine 74.9 1E+02 0.0022 31.8 14.8 124 94-224 5-140 (593)
403 PF06156 DUF972: Protein of un 74.9 24 0.00051 28.8 8.1 52 105-159 4-55 (107)
404 PRK14002 potassium-transportin 74.9 4.7 0.0001 36.1 4.4 35 3-43 48-89 (186)
405 PF04124 Dor1: Dor1-like famil 74.8 72 0.0016 30.5 12.8 38 163-200 52-89 (338)
406 PRK15422 septal ring assembly 74.7 35 0.00076 26.5 8.5 41 121-161 27-67 (79)
407 PF11221 Med21: Subunit 21 of 74.6 45 0.00097 28.2 10.2 76 65-154 64-139 (144)
408 PRK13169 DNA replication intia 74.2 25 0.00053 28.9 8.1 51 105-158 4-54 (110)
409 PRK00106 hypothetical protein; 73.8 1.2E+02 0.0025 31.6 20.0 60 144-203 105-164 (535)
410 PF04728 LPP: Lipoprotein leuc 73.7 32 0.00069 25.0 7.6 47 50-96 4-50 (56)
411 PF12711 Kinesin-relat_1: Kine 73.6 38 0.00083 26.7 8.7 19 119-137 24-42 (86)
412 KOG4302 Microtubule-associated 73.6 1.3E+02 0.0028 32.0 15.4 105 68-180 59-176 (660)
413 KOG4687 Uncharacterized coiled 73.4 74 0.0016 30.6 12.0 44 57-100 91-134 (389)
414 PF01576 Myosin_tail_1: Myosin 73.3 1.1 2.4E-05 48.5 0.0 38 57-94 336-373 (859)
415 PF05529 Bap31: B-cell recepto 73.3 54 0.0012 28.7 10.7 21 74-94 122-142 (192)
416 PF05008 V-SNARE: Vesicle tran 73.3 17 0.00037 27.0 6.6 45 118-162 31-76 (79)
417 PF10046 BLOC1_2: Biogenesis o 73.2 45 0.00097 26.5 13.2 26 68-93 5-30 (99)
418 PRK06008 flgL flagellar hook-a 73.0 91 0.002 29.9 13.9 115 72-186 12-127 (348)
419 PF15463 ECM11: Extracellular 73.0 20 0.00043 30.2 7.6 52 128-179 82-134 (139)
420 KOG3647 Predicted coiled-coil 73.0 58 0.0013 31.1 11.2 78 68-159 103-180 (338)
421 PRK13676 hypothetical protein; 72.9 42 0.00091 27.0 9.2 82 106-189 4-86 (114)
422 PF14257 DUF4349: Domain of un 72.7 26 0.00057 32.1 9.0 66 65-149 127-192 (262)
423 PF04582 Reo_sigmaC: Reovirus 72.4 2.7 5.8E-05 40.7 2.4 34 199-232 119-152 (326)
424 PF01920 Prefoldin_2: Prefoldi 72.4 43 0.00092 25.9 12.6 40 119-158 62-101 (106)
425 PRK11281 hypothetical protein; 72.2 1.8E+02 0.0039 33.0 21.4 27 70-96 80-106 (1113)
426 PF10805 DUF2730: Protein of u 72.1 31 0.00068 27.8 8.2 28 125-152 34-61 (106)
427 KOG0976 Rho/Rac1-interacting s 72.1 1.6E+02 0.0035 32.4 19.8 46 166-211 293-342 (1265)
428 PRK09546 zntB zinc transporter 72.1 75 0.0016 30.0 12.2 12 241-252 281-293 (324)
429 PF06133 DUF964: Protein of un 72.0 45 0.00099 26.1 9.9 83 107-191 2-85 (108)
430 PHA02607 wac fibritin; Provisi 71.9 97 0.0021 31.5 13.2 107 118-224 91-221 (454)
431 PF05483 SCP-1: Synaptonemal c 71.9 1.5E+02 0.0032 31.9 25.4 66 163-228 586-651 (786)
432 PF03114 BAR: BAR domain; Int 71.8 63 0.0014 27.6 19.3 37 44-80 28-64 (229)
433 PF10458 Val_tRNA-synt_C: Valy 71.8 30 0.00065 25.3 7.4 56 133-188 4-63 (66)
434 PF07889 DUF1664: Protein of u 71.7 60 0.0013 27.3 13.5 38 121-158 84-121 (126)
435 TIGR02449 conserved hypothetic 71.7 40 0.00086 25.2 8.3 43 52-94 3-45 (65)
436 KOG1981 SOK1 kinase belonging 71.6 64 0.0014 33.2 11.9 61 146-223 217-277 (513)
437 PRK15422 septal ring assembly 71.5 46 0.00099 25.9 8.6 52 181-232 21-72 (79)
438 TIGR00020 prfB peptide chain r 71.3 59 0.0013 32.0 11.4 20 208-227 93-113 (364)
439 TIGR03495 phage_LysB phage lys 70.8 63 0.0014 27.5 10.0 33 123-155 23-55 (135)
440 COG3206 GumC Uncharacterized p 70.6 1.2E+02 0.0025 30.2 16.8 67 152-229 329-396 (458)
441 PF10805 DUF2730: Protein of u 70.5 55 0.0012 26.3 9.5 31 125-155 64-94 (106)
442 PRK09841 cryptic autophosphory 70.5 1.5E+02 0.0032 31.5 15.1 32 65-96 269-300 (726)
443 PRK06231 F0F1 ATP synthase sub 70.4 71 0.0015 28.6 11.0 18 176-193 142-159 (205)
444 PF05565 Sipho_Gp157: Siphovir 70.2 63 0.0014 27.8 10.2 42 118-159 46-87 (162)
445 TIGR03545 conserved hypothetic 70.1 33 0.00073 35.5 9.9 11 16-26 99-109 (555)
446 PLN02939 transferase, transfer 70.1 1.9E+02 0.0041 32.3 21.1 15 214-228 436-450 (977)
447 TIGR00414 serS seryl-tRNA synt 69.9 33 0.00071 34.1 9.5 20 137-156 41-60 (418)
448 COG1566 EmrA Multidrug resista 69.3 52 0.0011 32.2 10.5 91 126-226 98-196 (352)
449 KOG3478 Prefoldin subunit 6, K 69.3 65 0.0014 26.7 9.8 104 120-229 6-113 (120)
450 PRK14474 F0F1 ATP synthase sub 69.3 70 0.0015 29.6 11.0 28 167-197 93-120 (250)
451 PF04912 Dynamitin: Dynamitin 69.1 1.2E+02 0.0026 29.7 16.0 62 121-182 263-330 (388)
452 PF05278 PEARLI-4: Arabidopsis 69.1 1.1E+02 0.0023 29.1 13.2 103 113-218 153-261 (269)
453 smart00502 BBC B-Box C-termina 69.0 53 0.0011 25.6 13.8 26 165-190 73-98 (127)
454 KOG4673 Transcription factor T 69.0 1.7E+02 0.0038 31.5 23.7 19 214-232 613-631 (961)
455 KOG1003 Actin filament-coating 68.9 92 0.002 28.3 20.6 160 63-222 4-195 (205)
456 PLN02320 seryl-tRNA synthetase 68.8 35 0.00076 35.0 9.5 30 122-151 96-125 (502)
457 COG3879 Uncharacterized protei 68.7 26 0.00056 32.8 7.8 53 130-182 54-107 (247)
458 PF04350 PilO: Pilus assembly 68.5 8.4 0.00018 31.5 4.3 47 143-189 2-48 (144)
459 TIGR02977 phageshock_pspA phag 68.4 90 0.002 28.1 14.3 42 121-162 33-74 (219)
460 KOG0240 Kinesin (SMY1 subfamil 68.3 1.6E+02 0.0035 30.9 15.7 9 7-15 303-311 (607)
461 PRK00888 ftsB cell division pr 68.3 14 0.0003 29.9 5.3 36 119-154 27-62 (105)
462 PF15066 CAGE1: Cancer-associa 68.1 1.5E+02 0.0032 30.4 19.3 145 44-188 364-527 (527)
463 PF09766 FimP: Fms-interacting 67.9 58 0.0013 31.7 10.6 107 122-228 15-137 (355)
464 PF05335 DUF745: Protein of un 67.9 91 0.002 27.9 15.9 24 166-189 146-169 (188)
465 PF02050 FliJ: Flagellar FliJ 67.6 54 0.0012 25.1 14.6 49 123-171 49-97 (123)
466 PF14282 FlxA: FlxA-like prote 67.3 19 0.00041 29.1 6.0 16 166-181 53-68 (106)
467 PF11570 E2R135: Coiled-coil r 67.3 79 0.0017 26.9 11.1 64 121-187 38-114 (136)
468 PF15035 Rootletin: Ciliary ro 67.0 92 0.002 27.6 12.0 16 211-226 107-122 (182)
469 KOG3156 Uncharacterized membra 66.8 1.1E+02 0.0023 28.2 12.8 63 163-226 115-194 (220)
470 cd00632 Prefoldin_beta Prefold 66.8 62 0.0014 25.6 11.1 17 137-153 74-90 (105)
471 PRK15136 multidrug efflux syst 66.8 1.3E+02 0.0029 29.3 14.5 44 46-89 96-139 (390)
472 PF12795 MscS_porin: Mechanose 66.8 1E+02 0.0022 28.0 15.1 150 60-228 28-179 (240)
473 KOG4378 Nuclear protein COP1 [ 66.0 1.3E+02 0.0028 31.3 12.6 89 68-186 584-672 (673)
474 PF02669 KdpC: K+-transporting 65.9 11 0.00024 33.8 4.8 47 3-52 49-103 (188)
475 PF02994 Transposase_22: L1 tr 65.9 17 0.00036 35.6 6.4 21 211-231 170-190 (370)
476 KOG4460 Nuclear pore complex, 65.9 1.8E+02 0.0039 30.6 17.4 85 120-207 603-695 (741)
477 KOG2751 Beclin-like protein [S 65.8 1.4E+02 0.003 30.3 12.6 9 214-222 261-269 (447)
478 cd00179 SynN Syntaxin N-termin 65.7 75 0.0016 26.1 13.3 62 119-180 6-71 (151)
479 cd07673 F-BAR_FCHO2 The F-BAR 65.6 1.2E+02 0.0026 28.3 12.1 102 124-226 65-170 (269)
480 PRK03598 putative efflux pump 65.5 1.2E+02 0.0026 28.5 12.6 22 75-96 79-100 (331)
481 PF14182 YgaB: YgaB-like prote 65.4 63 0.0014 25.1 8.4 51 107-162 12-62 (79)
482 PRK14472 F0F1 ATP synthase sub 65.3 90 0.002 26.9 11.0 14 180-193 116-129 (175)
483 PF01920 Prefoldin_2: Prefoldi 65.3 61 0.0013 24.9 10.4 22 121-142 7-28 (106)
484 PF04977 DivIC: Septum formati 65.2 22 0.00047 26.1 5.6 44 118-161 16-59 (80)
485 KOG0979 Structural maintenance 65.1 2.4E+02 0.0051 31.6 20.6 35 62-96 180-214 (1072)
486 PF10212 TTKRSYEDQ: Predicted 64.9 73 0.0016 32.9 10.8 66 126-191 448-514 (518)
487 PRK06569 F0F1 ATP synthase sub 64.9 95 0.0021 27.0 15.6 55 46-100 34-93 (155)
488 PF00901 Orbi_VP5: Orbivirus o 64.7 1.8E+02 0.0038 30.0 19.8 172 34-244 73-250 (508)
489 KOG2958 Galactose-1-phosphate 64.6 4 8.7E-05 39.1 1.8 18 3-20 105-122 (354)
490 PRK11020 hypothetical protein; 64.5 68 0.0015 26.7 8.7 64 74-153 2-66 (118)
491 cd07666 BAR_SNX7 The Bin/Amphi 64.3 1.2E+02 0.0027 28.1 18.1 131 44-190 73-203 (243)
492 PF04949 Transcrip_act: Transc 64.3 98 0.0021 27.0 15.7 122 28-184 10-146 (159)
493 PF04977 DivIC: Septum formati 63.9 26 0.00056 25.7 5.8 43 127-169 18-60 (80)
494 PF01544 CorA: CorA-like Mg2+ 63.7 65 0.0014 29.0 9.6 130 3-147 74-227 (292)
495 PF05103 DivIVA: DivIVA protei 63.7 3.7 8E-05 33.4 1.2 102 65-187 27-130 (131)
496 PF13863 DUF4200: Domain of un 63.5 77 0.0017 25.5 16.7 105 46-160 2-108 (126)
497 PF07200 Mod_r: Modifier of ru 63.4 88 0.0019 26.1 12.5 107 63-180 7-115 (150)
498 PF05384 DegS: Sensor protein 63.1 1E+02 0.0022 26.8 17.8 125 44-178 29-154 (159)
499 COG1344 FlgL Flagellin and rel 63.0 82 0.0018 30.4 10.6 76 108-183 46-124 (360)
500 cd07627 BAR_Vps5p The Bin/Amph 63.0 1.1E+02 0.0025 27.3 20.5 141 44-188 13-167 (216)
No 1
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.8e-26 Score=237.96 Aligned_cols=210 Identities=18% Similarity=0.239 Sum_probs=193.0
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCCCCCCch-----HHHHHHHHHHHHH---HHHHH
Q 023255 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALPPQHSPS-----LHHLEDRIAIQHS---DIQSL 61 (285)
Q Consensus 2 ~ifG~tli---------vtf~p~---rsvTleGD~ydpeG~LsGGs~p~~~~~l-----~n~Lee~L~~q~~---EIq~l 61 (285)
+||||||| |||||. |||||+||+|||+|||||||++.+..+| ++.++.++..++. .+++.
T Consensus 620 fvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~e 699 (1174)
T KOG0933|consen 620 FVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERE 699 (1174)
T ss_pred HHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999 999999 8899999999999999999999888887 8888888888888 67888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI 141 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~ 141 (285)
|...+..+..+..|+++|++..|+|.++..++..++..+ + +..++.++.++..++++|.+....
T Consensus 700 L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~------~----------~~~~~~~~e~v~e~~~~Ike~~~~ 763 (1174)
T KOG0933|consen 700 LKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHK------L----------LDDLKELLEEVEESEQQIKEKERA 763 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhh------H----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhh--------------hhhhhhhhhchhhhHHHHHHHH
Q 023255 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGR--------------AAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~r--------------a~~e~ekk~~~e~~eq~q~mek 206 (285)
.+....+|..|+++|+++.++ ..++++|.++|+.+++.+...+ ..+|..++....+-.|+..|++
T Consensus 764 ~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 764 LKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999988877665544 4456667777778889999999
Q ss_pred hHHHHHHHHHHHHHHHHhHHh
Q 023255 207 NIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 207 nli~ma~e~ekLrael~n~e~ 227 (285)
++-++.+|+..|++.+.+++.
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999998873
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.45 E-value=6.2e-11 Score=126.64 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=27.9
Q ss_pred cccCceEEE---------eecCCCcccccCCccCCCCCCCCCC
Q 023255 2 NIYGNSLHT---------TLHNHSQFTMSGRRVLREPPLSTRA 35 (285)
Q Consensus 2 ~ifG~tliv---------tf~p~rsvTleGD~ydpeG~LsGGs 35 (285)
.+||++||| + ++-++||++||+++|.|+++||+
T Consensus 618 ~~lg~~~v~~~l~~a~~~~-~~~~~vTldG~~~~~~G~~tgG~ 659 (1164)
T TIGR02169 618 YVFGDTLVVEDIEAARRLM-GKYRMVTLEGELFEKSGAMTGGS 659 (1164)
T ss_pred HHCCCeEEEcCHHHHHHHh-cCCcEEEeCceeEcCCcCccCCC
Confidence 489999982 2 23399999999999999999997
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.36 E-value=2.8e-10 Score=123.92 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCCCCCCch----HHHHHHHHHHHHH
Q 023255 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALPPQHSPS----LHHLEDRIAIQHS 56 (285)
Q Consensus 2 ~ifG~tli---------vtf~p~---rsvTleGD~ydpeG~LsGGs~p~~~~~l----~n~Lee~L~~q~~ 56 (285)
++||+|+| +++... |.|||+||+++|+|+++||++...+++. +..|+.++.....
T Consensus 611 ~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~ 681 (1163)
T COG1196 611 FVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEA 681 (1163)
T ss_pred HHhCCeEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 58999999 455552 9999999999999999999765544422 2234455544444
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2e-07 Score=99.59 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.5
Q ss_pred ccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCC
Q 023255 3 IYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRAL 36 (285)
Q Consensus 3 ifG~tli---------vtf~p~---rsvTleGD~ydpeG~LsGGs~ 36 (285)
+.+|||| |+|-+. |-|||+|-..+++||||||..
T Consensus 714 aLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~ 759 (1293)
T KOG0996|consen 714 ALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGK 759 (1293)
T ss_pred HHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCC
Confidence 4578888 888887 799999999999999999843
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1.6e-06 Score=91.43 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=90.6
Q ss_pred cccCceEEE---------eecCC-CcccccCCccCCCCCCCCCCCCCCCCch-------------------HHHHHHHHH
Q 023255 2 NIYGNSLHT---------TLHNH-SQFTMSGRRVLREPPLSTRALPPQHSPS-------------------LHHLEDRIA 52 (285)
Q Consensus 2 ~ifG~tliv---------tf~p~-rsvTleGD~ydpeG~LsGGs~p~~~~~l-------------------~n~Lee~L~ 52 (285)
.|||+|+|| +=.-. .||||+||..+..|+|+||-.....+-| ++.++.++.
T Consensus 616 ~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~ 695 (1200)
T KOG0964|consen 616 HVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIE 695 (1200)
T ss_pred HHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999992 11111 8999999999999999999653222222 444455555
Q ss_pred HHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHH-----
Q 023255 53 IQHSDIQSLLQDNQR-------LAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAE----- 117 (285)
Q Consensus 53 ~q~~EIq~lL~dnqr-------la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kleae----- 117 (285)
...++|..+..+.|+ .-..|..|+++++..+.+.+.++..+.-..-. -....+.+-+..--+|++
T Consensus 696 ~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel 775 (1200)
T KOG0964|consen 696 DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL 775 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Confidence 554455555555444 44556666666666666666555444322111 011122233333333444
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 --------LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 118 --------lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..++..+..+|.+++.++..+...+.++...+..++..|
T Consensus 776 ~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 776 FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888877777777777666555555443
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.67 E-value=1.7e-05 Score=84.85 Aligned_cols=11 Identities=18% Similarity=-0.100 Sum_probs=6.9
Q ss_pred ccCCccCCCCC
Q 023255 20 MSGRRVLREPP 30 (285)
Q Consensus 20 leGD~ydpeG~ 30 (285)
++|+++.|+|.
T Consensus 643 ~~g~~v~~~G~ 653 (1179)
T TIGR02168 643 PGYRIVTLDGD 653 (1179)
T ss_pred CCceEEecCCE
Confidence 46666666663
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=6e-05 Score=80.52 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=32.4
Q ss_pred cccCceEE---------EeecCC---CcccccCCccCCCCCCCCCCCC
Q 023255 2 NIYGNSLH---------TTLHNH---SQFTMSGRRVLREPPLSTRALP 37 (285)
Q Consensus 2 ~ifG~tli---------vtf~p~---rsvTleGD~ydpeG~LsGGs~p 37 (285)
.+|||+|| ++|... +.|||||-.|--+|.+||||..
T Consensus 599 ~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 599 FACGNALVCDSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred HHhccceecCCHHHHHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 37999999 888777 8999999999999999999965
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.36 E-value=0.00015 Score=77.73 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=33.0
Q ss_pred ccCceEEEee------------cCCCcccccCCccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 023255 3 IYGNSLHTTL------------HNHSQFTMSGRRVLREPPLSTRALPPQHSPSLHHLEDRIAIQHSDIQS 60 (285)
Q Consensus 3 ifG~tlivtf------------~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l~n~Lee~L~~q~~EIq~ 60 (285)
+||++.|||- ..+..||.+|+...+.|..+||++....... .++.++.....++..
T Consensus 621 ~~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~--~l~~e~~~l~~~~~~ 688 (1179)
T TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL--ERRREIEELEEKIEE 688 (1179)
T ss_pred HhCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchh--hHHHHHHHHHHHHHH
Confidence 4777777761 1348899999988888888776532222222 444444444443333
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.26 E-value=0.0012 Score=67.03 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHA 126 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~ 126 (285)
|+.++.....+...++..+..|-.....|+.++...+.+|.........+.... -++ ....+.++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~----kel----------~~~~e~l~~ 206 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ----KEL----------TESSEELKE 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----------HHHHHHHHH
Confidence 556666666677777777777777777777777777777777666655554432 122 223444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH----HHHHhh-------hhhhhhhhhhch
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER----QEIHKG-------RAAIECEKKNRA 195 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lr----qEl~~~-------ra~~e~ekk~~~ 195 (285)
|...+..+..++.....+|..+|..+++...+......+++.+..+.+.++ +.|+.. ......-+.-+.
T Consensus 207 E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e 286 (546)
T PF07888_consen 207 ERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENE 286 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 555555555555555555555555555544333333334444444443333 222221 111112223344
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH-hhHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQAELANAE-KRARA 231 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLrael~n~e-~r~~a 231 (285)
.+.+|++.++.-+-+-=++++.|+.||..+- .|.|.
T Consensus 287 ~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888889999999987764 44444
No 10
>PRK11637 AmiB activator; Provisional
Probab=98.15 E-value=0.0081 Score=59.23 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHH
Q 023255 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 135 iq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli 209 (285)
+..+...+.+|..+.+.++.++.+.......+..-+++++..+.+.+.....++-+++.....+.+++.-++.|-
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443344444444444444444444444444444444444444444444443
No 11
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.14 E-value=0.0022 Score=67.32 Aligned_cols=203 Identities=23% Similarity=0.326 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHh--HHHHHHHHHHHh---
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAAT-------HVALKQELSLAEQELRHLSSVAASVKAE--RDAEVRELYEKS--- 111 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~-------h~~LqqEL~laqhEL~~l~~~i~~~~ae--~e~~~r~L~~k~--- 111 (285)
...||..++.+..||+..-.-.+.|-.+ ...++.+|...++|...|+.++..+... +|.+-...+||-
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777766655443333333222 4567777777777777777777666555 333333333333
Q ss_pred -----hhhHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 112 -----LKLDAELRV--------------------------IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 112 -----~kleaelr~--------------------------~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
..+|+.|.. .|..|....+++.|+++|..+.+....++..+++++.+++
T Consensus 500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443311 1235556666777777777777777777777777776544
Q ss_pred h---h-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH-------HHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 161 D---E-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE-------QREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 161 ~---d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e-------q~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
. + ..-...|...|..|+.+-.+++...-.|.+-+.|+.- |+..-+.-+..==+||.-|++.|+-.-
T Consensus 580 ~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~--- 656 (697)
T PF09726_consen 580 KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL--- 656 (697)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3 2 3457888888899999999999999999998888764 556666666666779999999885432
Q ss_pred HHHHHhhhcCCCCcccCCCCCCCCCCC
Q 023255 230 RAAAAAAAVNPSTSYAASYGNPDPGFG 256 (285)
Q Consensus 230 ~a~~~a~~~~~~~~y~~~~gn~~~~~~ 256 (285)
|. -|+.+|+.+.+.|...|.
T Consensus 657 -av------~p~~~~~~~~~~~~~~~~ 676 (697)
T PF09726_consen 657 -AV------MPSDSYCSAITPPTPHYS 676 (697)
T ss_pred -hc------CCccccccCCCCCCccch
Confidence 22 355667655554444454
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.09 E-value=0.0022 Score=69.11 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~ 201 (285)
.++..+..++..+......+..++..++.++.+++.+ .+++..++.+++.++.++..+...++.-.+...+.-.+.
T Consensus 392 ~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 471 (1164)
T TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433322 223344444444444444444444444433333444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 202 EIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 202 q~meknli~ma~e~ekLrael~n~e 226 (285)
..+...+-.+..++.+++.++...+
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.70 E-value=0.0098 Score=64.34 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.8
Q ss_pred Eeec--CC---CcccccCCccCCCCC
Q 023255 10 TTLH--NH---SQFTMSGRRVLREPP 30 (285)
Q Consensus 10 vtf~--p~---rsvTleGD~ydpeG~ 30 (285)
++|+ |. ...|++||.-.-.|+
T Consensus 612 m~s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 612 MQSDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred HhcCCCCccceeeeccCccccccCCC
Confidence 7888 66 899999998776666
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.70 E-value=0.017 Score=54.18 Aligned_cols=104 Identities=17% Similarity=0.315 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
..+.....+|..+.+.|..+......+..+.+....++-+=-.|++.+......++.++..++.++......+.+|..+|
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 34455566666666666666666666666666656666666678888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-hccHHHHHHHH
Q 023255 150 NEINGDLAKARDE-SKDMAAIKAEI 173 (285)
Q Consensus 150 q~LekDL~~~~~d-~qkl~aLkaEI 173 (285)
+.|..+|.-.... .+.+.+|+..+
T Consensus 127 ~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 127 QSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 9999988866644 44454444333
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.65 E-value=0.049 Score=52.09 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH-HHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMA-AIKAEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~-aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
+..+.|+.+...+...++.+.....++...-+.|+.++..++.-...+. .-+.+|+.+|++|......|+.-|+.-.++
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777777665433222 345677888888888888888888888899
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 198 HEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
-.+++..+..+-.+..+..+|+++|+++++.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998844
No 16
>PRK09039 hypothetical protein; Validated
Probab=97.62 E-value=0.0052 Score=59.35 Aligned_cols=80 Identities=13% Similarity=0.236 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHH----HHH
Q 023255 143 QEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV----AQQ 214 (285)
Q Consensus 143 qeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~m----a~e 214 (285)
.++..++..+..+|...+.. ..++..|+.+|+.||.++..+.++++.-+....+.-.+...+++.|-.. ..|
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~ 191 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQE 191 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777665543 5668999999999999999999999999999999999999999888766 447
Q ss_pred HHHHHHHH
Q 023255 215 IERLQAEL 222 (285)
Q Consensus 215 ~ekLrael 222 (285)
++++|.++
T Consensus 192 l~~~~~~~ 199 (343)
T PRK09039 192 LNRYRSEF 199 (343)
T ss_pred HHHhHHHH
Confidence 78888777
No 17
>PRK11637 AmiB activator; Provisional
Probab=97.60 E-value=0.089 Score=51.93 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH----HHHhHHHHHHHHHHHHHHHH
Q 023255 169 IKAEIETERQEIHKGRAAIECEKKNRASNHEQREI----MEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 169 LkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~----meknli~ma~e~ekLrael~ 223 (285)
-+++++.+..++....+.++-+++.+...+.+++. -++-+..+.++..+|.+.|+
T Consensus 192 ~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 192 KQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333322 22334444445555555554
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.55 E-value=0.011 Score=56.49 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
.|...+..|+++.......+..+......+...
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~ 185 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRER 185 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544443
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=97.55 E-value=0.048 Score=57.93 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=57.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR--DESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~--~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
+++..+++......+.+..++..++.++..+.....++..++..+...+.+.. -+...+..++.+++.++.++..++.
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~ 680 (880)
T PRK03918 601 YNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRA 680 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777777777777777777777777665 2234445555555555555555544
Q ss_pred hhhhhhhhchhhhHHHHHH
Q 023255 186 AIECEKKNRASNHEQREIM 204 (285)
Q Consensus 186 ~~e~ekk~~~e~~eq~q~m 204 (285)
.++.-++.--++.++.+..
T Consensus 681 ~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 681 ELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333
No 20
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.52 E-value=0.051 Score=55.28 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
.....|+.+|..+..++..|+..+....... +.-.. +...+....-..+..++.||.+++..+++.......|...+
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~-l~~~~--~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v 311 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESK-LEEEA--EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASV 311 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH--HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666665555444411 11000 00001111112255666666666666666666666666666
Q ss_pred HHHHHHHHHHhhh-----------hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 150 NEINGDLAKARDE-----------SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 150 q~LekDL~~~~~d-----------~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.+|..||.+.+.+ ...+..|..++..++.+|.-++..-.
T Consensus 312 esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 312 ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 6666666665544 23345666666666666655554443
No 21
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.52 E-value=0.041 Score=59.70 Aligned_cols=101 Identities=15% Similarity=0.274 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
+....++.++..+...++++......|..+|..++++. ..+ .+++++...+++.|++++.+++..+.-.+....+.
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555554444 112 45556666666666666666666555555555555
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 198 HEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael 222 (285)
.+-...++.++-+.-.++-.||--+
T Consensus 428 ~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444444333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.48 E-value=0.073 Score=56.54 Aligned_cols=66 Identities=17% Similarity=0.398 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lrq 178 (285)
.++.++...+..+.++..+..+++.+......+..+++.+++++.++.....++..+..+++.+..
T Consensus 225 ~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~ 290 (880)
T PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555554444444444444444333
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.072 Score=56.77 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 71 THVALKQELSLAEQELRHLSSVAAS 95 (285)
Q Consensus 71 ~h~~LqqEL~laqhEL~~l~~~i~~ 95 (285)
....+++++.....++..+...+..
T Consensus 207 ~l~~~~~~l~el~~~i~~~~~~~~~ 231 (880)
T PRK02224 207 RLNGLESELAELDEEIERYEEQREQ 231 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 24
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.052 Score=60.74 Aligned_cols=106 Identities=8% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh---hh-hhhhhhch
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA---AI-ECEKKNRA 195 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra---~~-e~ekk~~~ 195 (285)
++.++.++.+++.+++++......|..++..+..+..++... ..+...+..++..++..+..+.. .| +|...+..
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666667777777777777777777777777777777776666 66777777777776665554433 33 34444433
Q ss_pred hhhH-----------HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 196 SNHE-----------QREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 196 e~~e-----------q~q~meknli~ma~e~ekLrael~n~e 226 (285)
+.++ ++..++..+-.+..++..|+.+|.+..
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 233444444555555555555555554
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.16 Score=56.41 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
++.++..+..++.........+..+++.++..
T Consensus 381 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~ 412 (1163)
T COG1196 381 LREELAELEAELAEIRNELEELKREIESLEER 412 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 26
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.20 E-value=0.34 Score=52.14 Aligned_cols=183 Identities=13% Similarity=0.210 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhh
Q 023255 44 LHHLEDRIAIQHS----------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLK 113 (285)
Q Consensus 44 ~n~Lee~L~~q~~----------EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~k 113 (285)
+.-|.++|+.... |+.+---.++.+-.=...|.+.....+.+|.+...........+|...+++-|-.--
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777766554 222222223333333333344444444445554444555555566666666555544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES-----KDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~-----qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
||.--=.-|-.+...+.|+.|+..++....+|+.++.-|..||.+-.+|+ -+.+.|+..-..||.-+.|+|-.--
T Consensus 313 iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 313 IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44321111222334455788888888899999999999999999877764 3467788888889999999998888
Q ss_pred hhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 189 CEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 189 ~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
.||--+......+...-.-+--+-|--|+|..++.++|
T Consensus 393 ~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 393 SEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88876666555444433344445556677777777776
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.19 E-value=0.15 Score=48.41 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 81 LAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIE---SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 81 laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e---~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
..+.+++.|........-.- ..-+.+++++..|+.++.... ....++..+.+++..+.....++..+|+.|..+.+
T Consensus 111 ~ler~i~~Le~~~~T~~L~~-e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 111 SLEREIERLEKKQQTSVLTP-EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444333222 122558888888888876554 45556667778888888888888888888888888
Q ss_pred HHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH
Q 023255 158 KARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 158 ~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek 206 (285)
.++.+ -++...++.+.+.|+.++...+..++..............-.++
T Consensus 190 e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77765 56789999999999999999999999888877777666665554
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.16 E-value=0.24 Score=50.74 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHH----HHHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ----QIERLQAE 221 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~----e~ekLrae 221 (285)
..+..|++|+..|+.+|.++|+..+-|.-.+.++--+.|.+.+.|--|-+ ||.-+|.-
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34577888889999999999999999999999999999999999888874 66655543
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=97.15 E-value=0.15 Score=54.29 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 66 QRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
..+-.....++.++...+.++..+...+.
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~l~ 237 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARETRD 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 30
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.13 E-value=0.1 Score=47.10 Aligned_cols=100 Identities=23% Similarity=0.389 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhh---------hccHHHHHHHHHHHHHHHH-
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA-----------RDE---------SKDMAAIKAEIETERQEIH- 181 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~-----------~~d---------~qkl~aLkaEIe~LrqEl~- 181 (285)
....|+....+++.-+......|..++..|..++..+ ..| ..-+..|+.+++.|+.||.
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555554 111 1124556666666666666
Q ss_pred ------hhhhhhhhhhhhchhhhHHH----HHHHHhHHHHHHHHHHHHHHH
Q 023255 182 ------KGRAAIECEKKNRASNHEQR----EIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 182 ------~~ra~~e~ekk~~~e~~eq~----q~meknli~ma~e~ekLrael 222 (285)
..+..|+.|+..-.+--+.+ +-+-.|+|-|-+--..|-.+|
T Consensus 150 er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 150 ERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45668999988876665543 556779999987555544443
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.12 E-value=0.23 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 023255 167 AAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e 188 (285)
..|...++.++.++..+...+.
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.07 E-value=0.24 Score=46.43 Aligned_cols=127 Identities=23% Similarity=0.368 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQEL--------SLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL--------~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleae 117 (285)
.|-++|+..-..++.+=..|+.|-.....++..- .....+|.-+...+..+..++ .+|+.+
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~ek-----------a~l~~e 76 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEK-----------ARLELE 76 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHh-----------hHHhhh
Confidence 4555666665566666666666666665555542 122333333333333333333 455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
++.++.++..++.........++.+..++..+.+++..... .-..|..+|+.|+.+|.-++..++-
T Consensus 77 ---~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 77 ---IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 67777888888888888888888888888888887776432 2233444444444444444443333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.07 E-value=0.23 Score=50.93 Aligned_cols=158 Identities=20% Similarity=0.303 Sum_probs=82.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhh--------HH--HH-----------
Q 023255 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKL--------DA--EL----------- 118 (285)
Q Consensus 60 ~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kl--------ea--el----------- 118 (285)
++-.++..+-.....++..|++.+++...|..-+.++.+-+|--|.+|+.-.... ++ ++
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666677777777777777777776766666665433211 00 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h-ccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 119 ----RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-S-KDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 119 ----r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~-qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
...+..+.+|.+|..+++.+...-++=..+-+.|+++|.+.+ | + -+|.+.+.+|..|+..+.- -.|
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~-D~n~vqlsE~~rel~Elks~lrv-------~qk 431 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK-DCNRVQLSENRRELQELKSSLRV-------AQK 431 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 112334445555555555555555555555566666665533 3 2 2455555555444443333 233
Q ss_pred hchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 193 NRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 193 ~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
-.-.+.+..|. +.+.|++|+..|.....--|..
T Consensus 432 EKEql~~EkQe-------L~~yi~~Le~r~~~~~~~~~~~ 464 (546)
T PF07888_consen 432 EKEQLQEEKQE-------LLEYIERLEQRLDKVADEKWKE 464 (546)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhc
Confidence 33333333333 5667777887775554333443
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.06 E-value=0.065 Score=49.57 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 58 Iq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
|+.+-....|+.......+.+|..++-++..++..+.
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~ 48 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALE 48 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555544444
No 35
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.06 E-value=0.21 Score=44.71 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH----HHHHHHHHHHHHHhhhhhh-hhhh----
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA----IKAEIETERQEIHKGRAAI-ECEK---- 191 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~a----LkaEIe~LrqEl~~~ra~~-e~ek---- 191 (285)
++.+|..+..+..+-..|.+....+..+.+.|..+|..++..+.|+.. ++..++.|..+-..+...+ +||.
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455555555555555566666666666666666666666655444422 2222222222222222222 4443
Q ss_pred --hhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 192 --KNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 192 --k~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
..-.+..-|.....+-+.....=.+-||+|+..-|
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234555666666666777777777888876655
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.31 Score=54.68 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023255 175 TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (285)
Q Consensus 175 ~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~ 233 (285)
.++++..+++..+.--...++....+++.++..+-.+-.|++. .+..|+++|.+-+.
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~ 1107 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMM 1107 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHH
Confidence 3445555555555556677888889999999999999999855 67788887766554
No 37
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.97 E-value=0.12 Score=49.51 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 61 lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
+..+.+.+-.-.-.|++..+..++++..+.+..
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333333333344444444444444443333
No 38
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.48 Score=54.95 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 58 Iq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
+..+...-.-+-..+..|..+|+..+.++..+.....
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~ 1016 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKA 1016 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444333
No 39
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.93 E-value=0.49 Score=46.72 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=95.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (285)
Q Consensus 59 q~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l 138 (285)
+.--.+.+..-.....+++++.-++++|.++..+..+.++.- --|.+.-.+++++..+ +-++-.+|+..+..|
T Consensus 112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl----~~l~~qr~ql~aq~qs---l~a~~k~LQ~s~~Ql 184 (499)
T COG4372 112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL----KTLAEQRRQLEAQAQS---LQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 333344444555667778888888888888888877776652 2388888999999655 556666667677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH-------HHHhhhhhhhhh---hhhc----hhhhHHHHHH
Q 023255 139 CVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ-------EIHKGRAAIECE---KKNR----ASNHEQREIM 204 (285)
Q Consensus 139 ~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lrq-------El~~~ra~~e~e---kk~~----~e~~eq~q~m 204 (285)
+....+|...-.+|+++-..+..-...+.....|+-...+ +++..-+-|..- -.++ .+.-+++|..
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~l 264 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRL 264 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888888877777777766655444444444444433332 222222222111 1111 2334566777
Q ss_pred HHhHHHHHHHHHHHHHH
Q 023255 205 EKNIISVAQQIERLQAE 221 (285)
Q Consensus 205 eknli~ma~e~ekLrae 221 (285)
|.-...+-+||+.|.+=
T Consensus 265 Et~q~~leqeva~le~y 281 (499)
T COG4372 265 ETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776543
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.92 E-value=0.15 Score=52.32 Aligned_cols=154 Identities=12% Similarity=0.217 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 75 LKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLK----LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i~~~~ae~-e~~~r~L~~k~~k----leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
+..+|...+..|......+.+..-+. +..+..+-+++-. ||.+..+...+.+....+...+..+....++|..++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444433331 1122222222222 355555556666666666666666666666666666
Q ss_pred HHHHHH-------HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 150 NEINGD-------LAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 150 q~LekD-------L~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
..+.+. +..++.=..++..+...++.+...+......|..-++...++.+++..+++....+...+..||.+.
T Consensus 334 ~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 334 DRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 2333333455666666666666677777777777778888888889999999999999999999888
Q ss_pred HhHHhh
Q 023255 223 ANAEKR 228 (285)
Q Consensus 223 ~n~e~r 228 (285)
..|.++
T Consensus 414 ~eAr~k 419 (569)
T PRK04778 414 LEAREK 419 (569)
T ss_pred HHHHHH
Confidence 777643
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.081 Score=55.91 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
+-+....|++||......++.|..++.+++...--+--+|-.-.-..|-.+-.+..+.++|..++..+.+|.-++++|..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55667788899999999999999988888776433333331111222333333444555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 148 evq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
++.....-...-....+.|.++..+-+.+++.|...--.++-|+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444332222111133455555555555555555544444443
No 42
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.87 E-value=0.32 Score=43.64 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhh---HhHHHHHHHHHHHhhhhHHHH--
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL---SSVAASVK---AERDAEVRELYEKSLKLDAEL-- 118 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l---~~~i~~~~---ae~e~~~r~L~~k~~kleael-- 118 (285)
|.++-..++..|...--.|.+|......|++.+...+|-++.. ..-+.+++ ..-|-+-|.|+..+..+|.+-
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~ 99 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS 99 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555556777777777777776666655554 22222222 234556677777777777773
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 119 --RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 119 --r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
..++.+..|-..+..+...+....++|..+...|...+-.|.+= ++-+.+--..|+.|..-|..-|+..+.-+-
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~ 179 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRL 179 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555555566666666666666666666666555432 333344444456666555555555555554
Q ss_pred hchhhhHHH
Q 023255 193 NRASNHEQR 201 (285)
Q Consensus 193 ~~~e~~eq~ 201 (285)
....+-+|+
T Consensus 180 e~s~LEeql 188 (193)
T PF14662_consen 180 EKSRLEEQL 188 (193)
T ss_pred HHHHHHHHH
Confidence 444555555
No 43
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.87 E-value=0.27 Score=43.08 Aligned_cols=61 Identities=15% Similarity=0.375 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023255 122 ESMHAELDRVRADIE-KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 122 e~lk~El~qlr~eiq-~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~ 182 (285)
..++.|+.+++++++ .+.-.+.+...+...++..+.+.+.. ...+..|+.+|+++|-++-+
T Consensus 94 ~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 94 QELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666665 33444556777777777777777777 66777777777777766554
No 44
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.86 E-value=0.41 Score=48.81 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
..++.++.||...+.++..+..........|..|+.+|.+.+.+
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE 352 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 34677777888888887777777777777777777777776654
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.85 E-value=0.32 Score=56.33 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
...|..++.....|+.++.+-++.|+..-..+..+.+.++.-+--...++|..|+-.+.+++.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ 1126 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555666666666555543
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.82 E-value=0.65 Score=49.67 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=87.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HhHHHHHHHHHHHhh-------------hhHHHHHHHH
Q 023255 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVK---AERDAEVRELYEKSL-------------KLDAELRVIE 122 (285)
Q Consensus 59 q~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~---ae~e~~~r~L~~k~~-------------kleaelr~~e 122 (285)
..+-.+-.++......|+..+..+..++..|...|.++. .++|-++.++-++.. +||--+...+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eke 446 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKE 446 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 333344444555555566666777777777777755444 456666666666655 2222222222
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hh----hccHHHHHHHHHHH
Q 023255 123 SMHAELDR--------VRADIEKLCVIKQEMIKDLNEINGDLAKAR--------------DE----SKDMAAIKAEIETE 176 (285)
Q Consensus 123 ~lk~El~q--------lr~eiq~l~~~rqeL~aevq~LekDL~~~~--------------~d----~qkl~aLkaEIe~L 176 (285)
-+...|.. ...++.......+++..++..|+++|.+.. +. .+.|.-|.-+++..
T Consensus 447 r~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~ 526 (775)
T PF10174_consen 447 RLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK 526 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Confidence 22222111 123344444455555555555555555543 11 34455555566666
Q ss_pred HHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH-------HHHHHHHHHHHhHH
Q 023255 177 RQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA-------QQIERLQAELANAE 226 (285)
Q Consensus 177 rqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma-------~e~ekLrael~n~e 226 (285)
+.++.++.+.++-. ..+++.....+.+|+-..... .|||+|+.-|-+++
T Consensus 527 rek~~kl~~ql~k~-~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 527 REKHEKLEKQLEKL-RANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred hhHHHHHHHHHHHH-HhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555441 222444555555666544443 28888888777776
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.74 E-value=0.39 Score=48.32 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHH
Q 023255 170 KAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (285)
Q Consensus 170 kaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ek 217 (285)
+..|+.+..++..+++.++.-.....+..+.++..+..|..+-.++..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444455544444444443333
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.71 E-value=0.39 Score=49.25 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=73.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHH
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAEL----RVIESMHAELDRVR 132 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleael----r~~e~lk~El~qlr 132 (285)
+|.++-.+..-+-..+....+++..+..++.....++..++++... +--++.+||-|+ +.+.-+..+|..++
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~----~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINT----LKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333333333333333333344444444444445555555555322 334445666663 22455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH-------------HHHHHHHHhhhhhhhhhh
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI-------------ETERQEIHKGRAAIECEK 191 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI-------------e~LrqEl~~~ra~~e~ek 191 (285)
..+......+.++..+++.|.++|.=.... .+-|.+++.-. ..|+..|...|+.||---
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~ 262 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS 262 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666778888888888888888877766 55555554433 456666666666665433
No 49
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.66 E-value=0.95 Score=48.64 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHH
Q 023255 102 AEVRELYEKSLKLDAE----LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEI 173 (285)
Q Consensus 102 ~~~r~L~~k~~kleae----lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEI 173 (285)
.++-.+-++..++..+ ++.++.+-+.+.-.+..+.++.....+|..++..+.....++... ...+..++.|+
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455555555443 455566666666666666677777777777777777777775432 66678888888
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHH
Q 023255 174 ETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 174 e~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e 214 (285)
..+..++.++.-.+..---.++..+.|.-..+++=++.+.+
T Consensus 504 ~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 504 ALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888777777888888888777776666553
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.46 Score=51.66 Aligned_cols=30 Identities=13% Similarity=0.439 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
++++.|++.|.+...+...+.+.+..+|+.
T Consensus 850 ~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 850 SELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666544
No 51
>PRK09039 hypothetical protein; Validated
Probab=96.63 E-value=0.49 Score=45.79 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
....+.+....+.++..|+.....|..++..|+..|...+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555554443
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.62 E-value=0.46 Score=43.99 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=44.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023255 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 105 r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~r 184 (285)
+++-+|..+.+-.+.++... .++.+|..+++.+......|..++..+...+.+.. .++..++..+..+...+...+
T Consensus 69 ~~~r~r~~~~e~kl~~v~~~-~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~---~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 69 QEIRERIKRAEEKLSAVKDE-RELRALNIEIQIAKERINSLEDELAELMEEIEKLE---KEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555333333 35666666666666666666666665555544422 234445555555555555555
Q ss_pred hhhhhh
Q 023255 185 AAIECE 190 (285)
Q Consensus 185 a~~e~e 190 (285)
..++.+
T Consensus 145 ~~~e~e 150 (239)
T COG1579 145 ARLEEE 150 (239)
T ss_pred HHHHHH
Confidence 555544
No 53
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.59 E-value=0.56 Score=49.77 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh----hhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEK----KNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ek----k~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
+..|+.-|+.++..+.+.+..++..+ +...=--.|++.+...|-.++.+|..|.-++-+-.+
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555444222 222223468999999999999999999998876654
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.59 E-value=1.6 Score=48.90 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR-VIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr-~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
...+...+.++|....+.+......+.......+.....+-....+++.+.. ....+..++..+.+++.........+.
T Consensus 254 ~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~ 333 (1201)
T PF12128_consen 254 QYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIE 333 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444444444443333334333333333321 123333444444444444444444444
Q ss_pred HHHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023255 147 KDLNEING-DLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (285)
Q Consensus 147 aevq~Lek-DL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~ 195 (285)
.+-..-++ ||..+..+..++|.++.+++.++.++.-+.+++..-...+.
T Consensus 334 ~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~ 383 (1201)
T PF12128_consen 334 QQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYN 383 (1201)
T ss_pred HHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 45555666777788888888777777777766654443333
No 55
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.58 E-value=0.55 Score=44.96 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=94.8
Q ss_pred HH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHhHHH--------------HHHHHHHHhhhh
Q 023255 57 DI-QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-------SVKAERDA--------------EVRELYEKSLKL 114 (285)
Q Consensus 57 EI-q~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~-------~~~ae~e~--------------~~r~L~~k~~kl 114 (285)
.| +.++..|+.|......|.++|..+...+..|++.+. -.....|. .......+...+
T Consensus 83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (306)
T PF04849_consen 83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQL 162 (306)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhH
Confidence 45 888888999988888888888877766666655443 11100000 000001122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 115 eaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
++=-+++..++.|-.++|.++..|......+..+-+.|..|..+--++ ++++..|..||..-..+..+....|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEI------ 236 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEI------ 236 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 444566666777777777777777777777777777777666554444 6666666666644443333333333
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
..++.|+-.+++.+=..+.|-|+|+.-|..+.
T Consensus 237 -t~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 237 -TSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555566666666666666666665553
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.57 E-value=0.94 Score=45.14 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
+..+|+.++.+|...-...+.|-++...++.+++...|+|......+
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l 89 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL 89 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444444444434444444455555555554444444443333
No 57
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.52 E-value=0.37 Score=40.22 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
....-+.|..++.++..+.....+|..++......+...... ..+-..|..+|+.++. -|+.-..-|.=+..
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~-------r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ-------RIEDLNEQNKLLHD 126 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 333345677777777777777777777777777777665544 4444555555544444 44444444555555
Q ss_pred HHHH
Q 023255 200 QREI 203 (285)
Q Consensus 200 q~q~ 203 (285)
|++.
T Consensus 127 QlE~ 130 (132)
T PF07926_consen 127 QLES 130 (132)
T ss_pred HHhh
Confidence 5543
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.50 E-value=0.26 Score=42.15 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
++.+.=.....+-+....|.++|...+.+...+.....+.+++
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e 53 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE 53 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444445556667777788888888888888877777666666
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.97 Score=49.92 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
+++|+..++.++..+.....+..++++..+.+|
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel 509 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESEL 509 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333333444444444443333
No 60
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.45 E-value=0.49 Score=40.45 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~ 181 (285)
...+.-++++..+..++..+...++.|..++..+.++-..+....++...--.+++.....+.
T Consensus 45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 335566666666666666666666666666666666655554443333333333333333333
No 61
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.57 Score=48.12 Aligned_cols=147 Identities=18% Similarity=0.251 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 72 HVALKQELSLAEQELRH-LSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 72 h~~LqqEL~laqhEL~~-l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
...+-+||...-.+.-. ....+.+.+.. -|+|++++.-.|++=.+.+.+++....++.|+.+..+....+..+-+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~----n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKT----NRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 33444555443333222 34444444443 36688887766777777888888888899999999999999999999
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH----HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ----REIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 151 ~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq----~q~meknli~ma~e~ekLrael~n~e 226 (285)
.+++.|...+.+ +.+-..|++.++++...++.-|+.- +-..+-+++ ++..++++..|..+.++|+-++=+.+
T Consensus 291 ~~~~~l~~l~~E---ie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 291 HMEKKLEMLKSE---IEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999887766 2333445555555555555555443 334444443 35677778888888888887775554
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.42 E-value=1.3 Score=50.53 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhh---h------
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAA---I------ 187 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~---~------ 187 (285)
.+.+..++......+..+.....++..++..+++++..++.. .+.+..++.++..+++.+.++..+ |
T Consensus 357 LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344444444444444444444444444444444444444322 234444555554444444433333 3
Q ss_pred -hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 188 -ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 188 -e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
+.-+......-++++.++..+-.+-+++.++.+++...+
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333334555555555555555555555554443
No 63
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.41 E-value=0.41 Score=45.93 Aligned_cols=27 Identities=4% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 200 QREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~n~e 226 (285)
+....+..+..+..+++.++..+.+..
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~~~ 273 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQRLI 273 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcE
Confidence 445555666666666777777776544
No 64
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.30 E-value=0.35 Score=51.17 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHH------HHHHHHH
Q 023255 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISV------AQQIERL 218 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~m------a~e~ekL 218 (285)
+..+|..|++++++--.+.-..+.|+..++.|+.|+.++-.+=+-|-|.++|-++|- ..+.|... --=-|.|
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q--ik~~~~~a~~~~~lkek~e~l 724 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKFEEL 724 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH--HHHHHHHHhccHhHHHHHHHH
Confidence 356777777777776666555788999999999999988888888888888888763 23333221 2245788
Q ss_pred HHHHHhH
Q 023255 219 QAELANA 225 (285)
Q Consensus 219 rael~n~ 225 (285)
++||+.+
T Consensus 725 ~~e~~~~ 731 (762)
T PLN03229 725 EAELAAA 731 (762)
T ss_pred HHHHHHh
Confidence 8888543
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.29 E-value=1.8 Score=48.37 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH---HHHH-HHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ---REIM-EKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq---~q~m-eknli~ma~e~ekLrael~n~e~r~ 229 (285)
....+...|+.+++++...++.++-+++..-..+.+ .+.. +.-+....++|+.|..+|...+.+.
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555556666666666666666555443332221 0111 2245556678888888887777543
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.29 E-value=1.6 Score=50.35 Aligned_cols=87 Identities=11% Similarity=0.233 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023255 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLra 220 (285)
++.+..+|..|+.++.++..+ .++...++.-...+...+..+...|+.+++.+......+...++|+-.|-.++.-|-.
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444 4444444444444445555555555555555555566555555555555555555555
Q ss_pred HHHhHHhh
Q 023255 221 ELANAEKR 228 (285)
Q Consensus 221 el~n~e~r 228 (285)
.|...+.|
T Consensus 880 ~l~~~~~~ 887 (1822)
T KOG4674|consen 880 RLKSAKTQ 887 (1822)
T ss_pred HHHHhHHH
Confidence 55544433
No 67
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.27 E-value=1.9 Score=45.37 Aligned_cols=168 Identities=15% Similarity=0.260 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAE 127 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~E 127 (285)
.+.+......-.+.+..-+.|-.+-..|+++|...+.++..-...+..---.+|.-.|.+.--..+.+.. +..++..
T Consensus 519 qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq---~k~lenk 595 (786)
T PF05483_consen 519 QEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQ---MKILENK 595 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH---HHHHHHH
Confidence 3333333334445555666666677777778877777777665555544444444444443333333333 4555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHh
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKN 207 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mekn 207 (285)
+..++..+........+|..+-..|.+.+.- +..|+..+.-.|..|+.|+..+..-++.+...+..-+|.-.+-|-|
T Consensus 596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a---E~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~ 672 (786)
T PF05483_consen 596 CNNLRKQVENKNKNIEELQQENKALKKKITA---ESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEE 672 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH
Confidence 6667777777666677777777777766544 6788888888899999999999999999998888888888887776
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023255 208 IISVAQQIERLQAELAN 224 (285)
Q Consensus 208 li~ma~e~ekLrael~n 224 (285)
|. -||+|+|.-..-
T Consensus 673 L~---~EveK~k~~a~E 686 (786)
T PF05483_consen 673 LL---GEVEKAKLTADE 686 (786)
T ss_pred HH---HHHHHHHHHHHH
Confidence 54 477777765433
No 68
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.26 E-value=1.2 Score=45.85 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~-d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
||.|+.+...+.+.+..+...+..+...-+.|..++..+.+-- .+.. +......+..+|+.+...+......++..+.
T Consensus 294 le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY-~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~ 372 (560)
T PF06160_consen 294 LEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY-TLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV 372 (560)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4777777777777777788878777777777777777777654 2333 3777888889999999999999999999998
Q ss_pred hchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH---hhHHHH
Q 023255 193 NRASNHEQREIMEKNIISVAQQIERLQAELANAE---KRARAA 232 (285)
Q Consensus 193 ~~~e~~eq~q~meknli~ma~e~ekLrael~n~e---~r~~a~ 232 (285)
.+.+..+.++.+.++|..+-.+...+...|.+.. ++||-.
T Consensus 373 ~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~ 415 (560)
T PF06160_consen 373 PYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREK 415 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888777776666666665553 555543
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.26 E-value=0.34 Score=51.24 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
...-|+.+.+++..+.+....|..+.+++..-.+
T Consensus 483 Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 70
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.25 E-value=0.75 Score=46.47 Aligned_cols=149 Identities=16% Similarity=0.289 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhhHhHHHHHHHHHHHh---hhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 72 HVALKQELSLAEQE-LRHLSSVAASVKAERDAEVRELYEKS---LKLDAEL----RVIESMHAELDRVRADIEKLCVIKQ 143 (285)
Q Consensus 72 h~~LqqEL~laqhE-L~~l~~~i~~~~ae~e~~~r~L~~k~---~kleael----r~~e~lk~El~qlr~eiq~l~~~rq 143 (285)
...+.+||.+.-.+ .+.+...+...+++.| .|++++ +||..-+ ++-.+|+.+.....+-...+....+
T Consensus 251 ~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~----~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 251 YEPSEQELKLGFEKFVHIINTDIANLKTQND----NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33455666554332 3455555555555542 233332 2332222 2234444555555555555555556
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~ 223 (285)
+....+.+|..++.. ...+|++|++.+++|+..+.+.+-.+|.-++-++| ...+.++|-.|.-+.++|+.++-
T Consensus 327 ~~~g~l~kl~~eie~---kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E----re~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 327 EWPGKLEKLKSEIEL---KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE----REKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred hcchHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHHH
Confidence 666666666655554 35678889999999999999888888777766665 34578899999999999999986
Q ss_pred hHHhhHHH
Q 023255 224 NAEKRARA 231 (285)
Q Consensus 224 n~e~r~~a 231 (285)
..+--+.+
T Consensus 400 ~~~leaq~ 407 (622)
T COG5185 400 SRKLEAQG 407 (622)
T ss_pred hHHHHHHH
Confidence 65533433
No 71
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.23 E-value=1.1 Score=42.12 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhHH
Q 023255 212 AQQIERLQAELANAE 226 (285)
Q Consensus 212 a~e~ekLrael~n~e 226 (285)
.-|.--||-||+--.
T Consensus 170 kdEardlrqelavr~ 184 (333)
T KOG1853|consen 170 KDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 347888888887655
No 72
>PF13514 AAA_27: AAA domain
Probab=96.19 E-value=2.8 Score=46.46 Aligned_cols=132 Identities=22% Similarity=0.310 Sum_probs=70.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH-----HHHHHHHHHhhhhHHHHHH-----------
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD-----AEVRELYEKSLKLDAELRV----------- 120 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e-----~~~r~L~~k~~kleaelr~----------- 120 (285)
++++.+.+......++..+++++..+++++..+...+.....+.. .....++.....+++++..
T Consensus 161 e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~ 240 (1111)
T PF13514_consen 161 ELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDG 240 (1111)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhH
Confidence 344455555666667777777777777777777777666666532 2233345555555555432
Q ss_pred ---HH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023255 121 ---IE-------SMHAELDRVRADIEKLCVIKQ---------EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 121 ---~e-------~lk~El~qlr~eiq~l~~~rq---------eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~ 181 (285)
.+ ....++..++.++..+..... .....|..|......+......++.++.++..++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~ 320 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELR 320 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222223333333322222 12233444444445555556667777777777777777
Q ss_pred hhhhhhh
Q 023255 182 KGRAAIE 188 (285)
Q Consensus 182 ~~ra~~e 188 (285)
.+...+.
T Consensus 321 ~~~~~lg 327 (1111)
T PF13514_consen 321 ALLAQLG 327 (1111)
T ss_pred HHHHhcC
Confidence 7666665
No 73
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.17 E-value=2.4 Score=45.51 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
+..++-+|..-..||..+-..++.+..++..+++.|++.+..|...+.+..-+.++-|.-.-.|=++..-++.-=..++.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444557888888888888899999999999999998888888888888766555554444444443333444
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------Hh--hhhccHHHHHHHHHHHHHHHHhh
Q 023255 124 MHAELDRVRADIEKLCV-------IKQEMIKDLNEINGDLAK-----------AR--DESKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~-------~rqeL~aevq~LekDL~~-----------~~--~d~qkl~aLkaEIe~LrqEl~~~ 183 (285)
+..|...+..+|.++.. ....|..+|..|+..+.+ +. .|..+...+...|+..-.+..+.
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~ 448 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 44444443333333332 233333333333322221 11 22333334445555666666666
Q ss_pred hhhhhhhhhh-chhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 184 RAAIECEKKN-RASNHEQREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 184 ra~~e~ekk~-~~e~~eq~q~meknli~ma~e~ekLrael~ 223 (285)
+..++....- ..+..++...+.+-+-..-.+++.|..+|.
T Consensus 449 ~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 449 QERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666543211 113345555555555555555555555553
No 74
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.16 E-value=1 Score=41.17 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hccHHHHHHHHHHHHHHHHhhhhhhh------
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD--E--SKDMAAIKAEIETERQEIHKGRAAIE------ 188 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~--d--~qkl~aLkaEIe~LrqEl~~~ra~~e------ 188 (285)
.+++.+...+..+............+...++..++.+|.+... + .+++..|..+|..+...+..+....+
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re 171 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE 171 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 3455556666666666666666666666666666666655432 2 56666666666666666665555443
Q ss_pred --hhhhhchhhhHH-------HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 189 --CEKKNRASNHEQ-------REIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 189 --~ekk~~~e~~eq-------~q~meknli~ma~e~ekLrael~n~e 226 (285)
||.+- ..+.++ ....|++...+-++|++|..+|....
T Consensus 172 ~~~e~~i-~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 172 DEYEEKI-RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111122 22345555556666666666665554
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.15 E-value=1.3 Score=42.42 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH-HHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAA-IKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~a-LkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
++.|+.+-..+...++.+....-++....+.|+.++..++.-...+.. -..+++.+|.+|...-..++.-++.-.+.-+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443322111100 0223344444444444444444444455555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 200 QREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
|++..+..+-....+...++.+|+.+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555553
No 76
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.12 E-value=0.23 Score=44.84 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhH
Q 023255 205 EKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 205 eknli~ma~e~ekLrael~n~ 225 (285)
...+-++-+|||.||+||.--
T Consensus 130 ~~~~~~l~~e~erL~aeL~~e 150 (202)
T PF06818_consen 130 EDELGSLRREVERLRAELQRE 150 (202)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 345677888999999999743
No 77
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.12 E-value=1.5 Score=43.71 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=80.2
Q ss_pred hHhHHHHHHHHHHHhhhhHHH--HHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh----------
Q 023255 97 KAERDAEVRELYEKSLKLDAE--LRVI--ESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARD---------- 161 (285)
Q Consensus 97 ~ae~e~~~r~L~~k~~kleae--lr~~--e~lk~El~qlr~eiq~l~-~~rqeL~aevq~LekDL~~~~~---------- 161 (285)
..++|-++-.|+.|+.|+|++ ++.+ +.++.|..++...+++-+ +....|-..+++|++|-.-++.
T Consensus 153 eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~ 232 (552)
T KOG2129|consen 153 EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPS 232 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 356788888899999999987 3444 666666666665544322 2233444444444444322221
Q ss_pred ---h--------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHH-HHHHHHHHHHHH
Q 023255 162 ---E--------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS-VAQQIERLQAEL 222 (285)
Q Consensus 162 ---d--------~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~-ma~e~ekLrael 222 (285)
| +.--.+++.-|+.|+.|+.|+|+.+--=.|-+.+.+-|..+=|+++-. -.|+-+||.-|+
T Consensus 233 ~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 233 LPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred chhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 222356777788888888888888888788888888887777766543 334555665555
No 78
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.09 E-value=1.7 Score=43.20 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+..++.++..++.++..++..+.-
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777776654
No 79
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=1.2 Score=45.66 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh-----HHHHHHH-----HHHHhhhhHHHHHHHH----
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE-----RDAEVRE-----LYEKSLKLDAELRVIE---- 122 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae-----~e~~~r~-----L~~k~~kleaelr~~e---- 122 (285)
+|...-.++++|......|+.+|.-+..-+--++....++.+. +++-.++ --+++.|||++|....
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~d 411 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIED 411 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7888889999999999999999888877777777777766665 2333333 3478888988874332
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 123 ------SMHAELDRVRADIEKLCVIK---QEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 123 ------~lk~El~qlr~eiq~l~~~r---qeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
.+-..|.++..++..-...+ +.+....=.|.++......| ..|+.+|.--+..-....+.+-----.|||
T Consensus 412 dar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 412 DARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHH
Confidence 22223333433333333333 33333334456666666677 777777764443333333332222334555
Q ss_pred hchhhhHHHHHHHHhHHH
Q 023255 193 NRASNHEQREIMEKNIIS 210 (285)
Q Consensus 193 ~~~e~~eq~q~meknli~ 210 (285)
.++-.++....=|-|+.+
T Consensus 492 k~aq~lee~rrred~~~d 509 (654)
T KOG4809|consen 492 KNAQLLEEVRRREDSMAD 509 (654)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 555555555544444433
No 80
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.08 E-value=0.93 Score=40.63 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~-d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
-..+.+..+|..+...++......+.|..++.-..+...+--. +..|..+++.++..+..|+.++...+.
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666666666666666666666666666666555333 367777777777777777777766553
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.02 E-value=0.53 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
++..+-..+++.|....+++..+...+.....
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555443333
No 82
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.02 E-value=0.82 Score=52.62 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESM 124 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~l 124 (285)
-....+++....++..+=.++.-+..+-..|.+++.....+.+.++..+..+++-....-+...+.-.+ +
T Consensus 734 ~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~----------~ 803 (1822)
T KOG4674|consen 734 LSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDK----------C 803 (1822)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 345556666666788888888888888888888888888888888877777777766555555333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
...|.++..+++.|...-++...++..++.++..--.+ -.++..+..+++.+..++..++..|+
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444555555555444433333 34445555555555555554444443
No 83
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.01 E-value=0.12 Score=49.37 Aligned_cols=93 Identities=16% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
...++.++..+++.+.....++..++..++++-.++..+ +..|+.+.+.+.++-.+.-..+-.-+....+..+..+.
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~e---l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQE---LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666666666666554443322 33344444444333332222222222222333444455
Q ss_pred HHHhHHHHHHHHHHHH
Q 023255 204 MEKNIISVAQQIERLQ 219 (285)
Q Consensus 204 meknli~ma~e~ekLr 219 (285)
++..+..+..++++||
T Consensus 118 l~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 84
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.95 E-value=3.4 Score=46.95 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSL 61 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~l 61 (285)
...|+.+|+....+|..+
T Consensus 744 i~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 744 IAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555543333
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.94 E-value=1.3 Score=40.47 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
..+..+|..+...+..+.....+|..++..+...|..+..- ..+...+...|..|...+..+...+++--.--..+
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555544322 44567788888889988888888888777666666
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 198 HEQREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael~ 223 (285)
-.+...+|..|...-....+++.||-
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777763
No 86
>PRK01156 chromosome segregation protein; Provisional
Probab=95.93 E-value=2.8 Score=45.03 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.++..+...+..+.++...+.++.++.....++..++..+.+...++.....++..++.+++.++.++..++..++.
T Consensus 623 ~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 699 (895)
T PRK01156 623 EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRAR 699 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666666665544444333444444444444444444444444443
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.87 E-value=0.98 Score=38.51 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
++..+|..|....+.|..+|..++..|..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 88
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.83 E-value=2.6 Score=46.93 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=34.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
..+++.|+..-..+-++...++...+-++..+.+..+-....+..+-+.-...+.+..++.+++
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 3344444444455555555555555555555555555555555555555555555555555554
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=1.3 Score=45.66 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
+-.|...|+.. ++.++.|+.....+++.+.....+|..+|..
T Consensus 285 ~~~k~~~~~~~---l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 285 MKSKKQHMEKK---LEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43444444444 7788888888888888888888888877643
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.72 E-value=0.45 Score=39.59 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAE 83 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laq 83 (285)
++.|...|...+.|+..+=.+..++..+...+.+||...-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555554433
No 91
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.69 E-value=4.6 Score=45.85 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD----AEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCV 140 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e----~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~ 140 (285)
.+.-...+..++.+|...+..+..|.........-.. ....++...-.+++.-.+.+.....++.+++.++.++..
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDA 304 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666555543333222 222223333334444445556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023255 141 IKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 141 ~rqeL~aevq~LekDL~~~~ 160 (285)
.+..+..+.+.+++++..++
T Consensus 305 ~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 305 RTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666654
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.68 E-value=5 Score=46.07 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH-------Hhhhhhhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI-------HKGRAAIECEKKN 193 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl-------~~~ra~~e~ekk~ 193 (285)
++..+.++..++.++..+....+++..++..+.+.+...+....+.......++..++-+ ..+...++.-...
T Consensus 371 LeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~ak 450 (1486)
T PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAK 450 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444433 3344444444445
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~ 223 (285)
-.+...+...+|+.|-.+..+++.++....
T Consensus 451 lee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 451 EQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777776666653
No 93
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=2.1 Score=46.71 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 115 eaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
.+-..+.+-+|+++..+..++......+.+|..++.....++.....+ +.++.+.-..++.+.+++..+-.+.|+-
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777777776666666666666665555555554433 5566666667777777777777777776
Q ss_pred hhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 191 KKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 191 kk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
|+..-.. .+++..-...+..++++|.+++
T Consensus 331 k~~~~~r-------q~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 331 KKAAEKR-------QKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhhhhhcC
Confidence 6643322 2344445556666666665554
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.56 E-value=0.66 Score=38.60 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+|-+.|| .+..|+..++.++..+...|..+..+|-.++.+..+..+..++++.|+.+++.|.+.+..+--.+
T Consensus 20 ~L~s~lr---~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 20 RLQSQLR---RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544 44578899999999999999999999999999999998888999999999999988777665544
No 95
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=95.54 E-value=0.55 Score=41.59 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc----hhhhHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR----ASNHEQR 201 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~----~e~~eq~ 201 (285)
+|+.++..+|..|....++|...+..++.+|..+++.. -++++..+|..|+.+...-|.-++.-|.+. .+-.+|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 57888888999999999999999999999998887653 367777777777777777777777776654 4667788
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 023255 202 EIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 202 q~meknli~ma~e~ekLrael 222 (285)
.-|=...++|-|....+=-||
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777665555
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.52 E-value=3.4 Score=43.28 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 174 ETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 174 e~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
..||+.|..+..+|---.+.|+++...+|
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 45666666666666666666666655554
No 97
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.46 E-value=1.2 Score=42.88 Aligned_cols=120 Identities=16% Similarity=0.212 Sum_probs=84.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHH-HH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERD-AE----VRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e-~~----~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~ 137 (285)
..|..|..+...|+|.|.-++-|+..|...+...+...+ .. .++=-+-+..||.=-..++.+..++..+--|.++
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558889999999999999999999999998887654410 00 0111112233344455677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hcc---HHHHHHHHHHHHHHHHh
Q 023255 138 LCVIKQEMIKDLNEINGDLAKARDE-SKD---MAAIKAEIETERQEIHK 182 (285)
Q Consensus 138 l~~~rqeL~aevq~LekDL~~~~~d-~qk---l~aLkaEIe~LrqEl~~ 182 (285)
+..+|..+..++.+|..+|.-.=+. ..+ |.+|-.|-.=|+..|..
T Consensus 159 l~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q 207 (319)
T PF09789_consen 159 LVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ 207 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999875544 666 56666666656555543
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=3.8 Score=44.81 Aligned_cols=167 Identities=22% Similarity=0.290 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHhHHHHHHHHHHHhhhhHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-----SVKAERDAEVRELYEKSLKLDAEL 118 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~-----~~~ae~e~~~r~L~~k~~kleael 118 (285)
++.+++++..-..|+..+......+.++-..++..|...++..+-|-..-+ +++.++|-.+|.-+.+. .
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l------~ 403 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKL------K 403 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHH------H
Confidence 456666666666677777777777777777777777777776665533332 23345555554443333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
+.+...+.....++.|+..+.....+.-.+++.|..++. ..+..+...-+-+-..|...-+++
T Consensus 404 ~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~-----------------e~~~r~~~~~~~~~~~k~~~del~ 466 (1200)
T KOG0964|consen 404 RGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN-----------------ETKGRMEEFDAENTELKRELDELQ 466 (1200)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444 333333333333333333334444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023255 199 EQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (285)
Q Consensus 199 eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~ 233 (285)
..++..=.-=-..-..++.++.+|..++++-+++.
T Consensus 467 ~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 467 DKRKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443100000122345555666655666655554
No 99
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.41 E-value=4 Score=43.78 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------h-hccHH
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-----------------E-SKDMA 167 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~-----------------d-~qkl~ 167 (285)
++.++.-+|+++ .+.+..++..++.+++.+....+++...+..|+.+|..++. + ..+++
T Consensus 593 el~eelE~le~e---K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 593 ELEEELEKLESE---KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444 45555566667777777777777777777777777665542 1 44566
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHH
Q 023255 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (285)
Q Consensus 168 aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~e 216 (285)
.+++|++.++..+..+...|+.||..+.|+...-+.+|-.|-++.++..
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 7799999999999999999999999999999999999999999988764
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.40 E-value=1.5 Score=46.65 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
...+.+..+..+++.||++++...+.|-.+...|+.|-=.++...+-|+.-..|.++||.||.++.-.+++-+.---|..
T Consensus 69 ~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 69 KECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888888888888888888888887777777888888889999999999999999988775544443
Q ss_pred HHHH----HHHHhHHHHHHHHH---HHHHHHHh
Q 023255 199 EQRE----IMEKNIISVAQQIE---RLQAELAN 224 (285)
Q Consensus 199 eq~q----~meknli~ma~e~e---kLrael~n 224 (285)
.-.. -||-=|-++-.|=| .||-||..
T Consensus 149 rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 149 RLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 25666667766655 37777743
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.39 E-value=0.13 Score=45.69 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHH
Q 023255 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 168 aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekL 218 (285)
.|+.|+..|+-++..+...+.--++-|.++++.. |-.|++|+++|
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw------m~~k~~eAe~m 192 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEENRELVERW------MQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence 3455555555566666655555566666666554 22356666655
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.34 E-value=1.4 Score=45.90 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
.......+..++...+.+|..+...+...+.+. .+..+ ....+.++.++.+++.++..+......+..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e--~i~~l----------~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEE--QIAQL----------LEELGEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888888776642 33444 455666777777777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 023255 148 DLNEINGDLAKAR 160 (285)
Q Consensus 148 evq~LekDL~~~~ 160 (285)
++..+++++.+..
T Consensus 457 ~i~~~~~~~~~~~ 469 (650)
T TIGR03185 457 AIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776644
No 103
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.33 E-value=3.1 Score=40.73 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHH----hhhhccHHHHHHHHHHHHHHHHh
Q 023255 143 QEMIKDLNEINGDLAKA----RDESKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 143 qeL~aevq~LekDL~~~----~~d~qkl~aLkaEIe~LrqEl~~ 182 (285)
+.|..++..++.++.++ ..+.-++..++++|+.++..+..
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34445555555555443 33466777888888877777655
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.27 E-value=0.3 Score=46.69 Aligned_cols=29 Identities=7% Similarity=0.164 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRA 195 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~ 195 (285)
-.+..+.+.+...+...+..++--+|.|+
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34455556666666666666655555543
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.25 E-value=1.7 Score=37.08 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023255 144 EMIKDLNEINGDLAKARD 161 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~ 161 (285)
.|...|+.|+.+|.+...
T Consensus 77 ~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 456666666666655443
No 106
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.24 E-value=3.8 Score=41.68 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHh
Q 023255 212 AQQIERLQAELAN 224 (285)
Q Consensus 212 a~e~ekLrael~n 224 (285)
-.|+.+||..+.+
T Consensus 368 e~E~q~lr~~l~~ 380 (511)
T PF09787_consen 368 ESEIQKLRNQLSA 380 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 4577778877755
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.22 E-value=4.4 Score=41.73 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhhH-HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 174 ETERQEIHKGRAAIECEKKNRASNHE-QREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 174 e~LrqEl~~~ra~~e~ekk~~~e~~e-q~q~meknli~ma~e~ekLrael~n~e 226 (285)
..+..++.++...++. ..-|.+-++ +....+..+-.+..+.+-|..-...++
T Consensus 451 ~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 451 FEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776 667777776 666666666666665555555554444
No 108
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.15 E-value=1.3 Score=39.86 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHH--------HHHHhHHHHHHHHHHHHHHHHh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE--------IMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q--------~meknli~ma~e~ekLrael~n 224 (285)
+..|+-+-+.|.+.+.++....+.-...+...+..+| .+|+.|..|...+|+--|+|..
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433433333333 4678888888888888888843
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.13 E-value=3.3 Score=39.81 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
+.+.+..+.|..+|.+|.+.|...+.+ ..++.....+...++.+=.+++-...-|
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555444444 4445555555555555555554444444
No 110
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.11 E-value=3.3 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHH
Q 023255 208 IISVAQQIERLQAELANAEKRARA 231 (285)
Q Consensus 208 li~ma~e~ekLrael~n~e~r~~a 231 (285)
+-.+..||..||..|+++.....+
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455888888888877755433
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.10 E-value=4.1 Score=40.74 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 49 DRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 49 e~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
++|.....+|..+-.......++...|+.+|...+.++..+...+.....+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~ 88 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444445555545555555555666666666666666665555544443
No 112
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.08 E-value=6.7 Score=43.12 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
|+.+...++..|..++..+..+-+-.+.|+-|+..++.+...........
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44445555555666666666666666666666666666665555544444
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.04 E-value=1.9 Score=43.05 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQ--------RLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnq--------rla~~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
...+++++...+..+..+...|. .+......+++++..++.++..++..+..++.
T Consensus 170 l~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 170 IKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887776654432 24566777778877777777777666665543
No 114
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.03 E-value=6.4 Score=42.67 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 147 aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
..+..+...+.+.+...+.+..+..++..+...+...++ ..+-..+.+++.+..+.++..+...+++|..++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRA----LLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666666655222 223334455666666677777777777777766655
No 115
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.02 E-value=5.8 Score=42.06 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHHh
Q 023255 211 VAQQIERLQAELANAEK 227 (285)
Q Consensus 211 ma~e~ekLrael~n~e~ 227 (285)
++..|+-||--|..+|.
T Consensus 585 lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 585 LVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66778888877766663
No 116
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=94.97 E-value=0.58 Score=37.18 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
.+.++-..++..+..+.....-+...+.+++.+..+ ..++.-++....+.|..|+..++..+. .+.+..++++
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~k---adqkyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~ 79 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAK---ADQKYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHH
Confidence 333444444445555555555555555555555444 366777888888888888888887764 4567888888
Q ss_pred HHHHhHHHHHHHHHH
Q 023255 203 IMEKNIISVAQQIER 217 (285)
Q Consensus 203 ~meknli~ma~e~ek 217 (285)
-+|+++++--.+.||
T Consensus 80 ~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 80 ETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHhhc
Confidence 899999998887775
No 117
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.97 E-value=2 Score=44.58 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH
Q 023255 138 LCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (285)
Q Consensus 138 l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI 173 (285)
+....+.|+.+|++++.-+.+.... ..+|..|.+++
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444433 33333333333
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.44 Score=49.27 Aligned_cols=100 Identities=14% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
++.++.|+..|+.++.++......|..++.++.+++..-...+.++.++..+|+.|+.+|......+|..++. ...+.+
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~-l~~l~k 509 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK-LAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4444444444444444444444444444444444444211124556667777777777777777777665543 334455
Q ss_pred HHHHHHhHHHH-HHHHHHHHHH
Q 023255 201 REIMEKNIISV-AQQIERLQAE 221 (285)
Q Consensus 201 ~q~meknli~m-a~e~ekLrae 221 (285)
++.||-.=-.| ...|++|+-+
T Consensus 510 ~~~lE~sG~g~pvk~ve~~t~~ 531 (652)
T COG2433 510 MRKLELSGKGTPVKVVEKLTLE 531 (652)
T ss_pred HHhhhhcCCCcceehhhhhhHH
Confidence 55555321111 1356666543
No 119
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=94.91 E-value=0.38 Score=35.53 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
|++|+|+-..+..||..+++.-..+....++...+..
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~ 42 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNR 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888877766555554444444333
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.90 E-value=3.8 Score=39.31 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 201 REIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 201 ~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
....+..+..+..++.++++++..++.+
T Consensus 241 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 241 REEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666777777777766643
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.90 E-value=2.6 Score=37.44 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=96.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASV---------KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRA 133 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~---------~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~ 133 (285)
..+++.+.-...|+..+.--+..+.-++.++... ....+-..-+|-+-..+||.+-++.+.|.+--.-+|.
T Consensus 9 e~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLRe 88 (182)
T PF15035_consen 9 EEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555555556666666666666666666322 1111112334666788999999999997766666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma 212 (285)
.++.....-+.|+.+++.++.|+..+..+ ..|-. ..+.+-.....-+.-|-+.-..+-.+..+.-.++.-|-
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~-------~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDELEQKEA-------EWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888777775544 33333 33334444444555555555666667777777766664
Q ss_pred H----HHHHHHHHHHhH
Q 023255 213 Q----QIERLQAELANA 225 (285)
Q Consensus 213 ~----e~ekLrael~n~ 225 (285)
. .+..+|+|++.+
T Consensus 162 ~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 162 TATERDLSDMRAEFART 178 (182)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 4 566777777543
No 122
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.83 E-value=4.7 Score=40.11 Aligned_cols=23 Identities=4% Similarity=0.063 Sum_probs=14.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
..++..++.+|..++.++..+++
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 45566666666666666665543
No 123
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.81 E-value=2.9 Score=37.52 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRL 68 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrl 68 (285)
.+.|..++...+.+++.+..+|+-|
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.77 E-value=2 Score=39.63 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqE 179 (285)
....-.+|.+.+.||..|....+++..+-..+...+.++.. ...-|+.+|+.++.+
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444555666666666655555555555555555544332 334455566666655
No 125
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.71 E-value=5.3 Score=40.09 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS 95 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~ 95 (285)
+-+++++.-.+.+++.+..|.-..-+.+..+++|-....|-.+.|+.....
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re 268 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE 268 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666777777776677778999999999999988888776653
No 126
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.67 E-value=2.9 Score=42.40 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.-.++.++.||...+.+|+-|.+.+.+|..+|..--=-..+|..-++.-..|-.|++.+.-+..+++..+.
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 56678888888888888888888888888877643322334443344445566666666666666666553
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.54 E-value=2.5 Score=35.68 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSV 92 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~ 92 (285)
+...+.+..+...+..++...++.+.+|...
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444444445544444444444333
No 128
>PF15294 Leu_zip: Leucine zipper
Probab=94.50 E-value=4.5 Score=38.37 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=41.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
.+.+..|...+..++.++ ||. -.+..++.++|+-+|.+--.+|=+++..|..+++=
T Consensus 189 ~q~l~dLE~k~a~lK~e~---------ek~-~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aeke 244 (278)
T PF15294_consen 189 AQDLSDLENKMAALKSEL---------EKA-LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKE 244 (278)
T ss_pred ccchhhHHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhh
Confidence 555666777776665433 333 34555699999999999999999999998887743
No 129
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.48 E-value=4.3 Score=39.73 Aligned_cols=64 Identities=11% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhccHHHHHHHHHHHHHHHHhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~---~d~qkl~aLkaEIe~LrqEl~~~r 184 (285)
...++.+..++...+.++.....+++.++..+.++|.+-. +|++-|-.+|.-|..||+||....
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444555555555555555533 456677788888888888887654
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.48 E-value=1.9 Score=39.56 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma 212 (285)
..+.++...+++|..++..+++++..++. ....+...++..++++..+...++.-++.+.+..-.+..|-..|-...
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~---~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEV---YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444332 233334444455555555555555555555555555555555555533
Q ss_pred H------------HHHHHHHHHHhHH
Q 023255 213 Q------------QIERLQAELANAE 226 (285)
Q Consensus 213 ~------------e~ekLrael~n~e 226 (285)
. -|++||+.+.+++
T Consensus 119 ~~d~Pf~~~eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 119 ELDLPFLLEERQERLARLRAMLDDAD 144 (251)
T ss_pred hcCCCCChHHHHHHHHHHHHhhhccC
Confidence 2 3566666665554
No 131
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.47 E-value=4.1 Score=43.01 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSS 91 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~ 91 (285)
.+-+..+...++++|..++.+|.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555555543
No 132
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.43 E-value=8.3 Score=41.13 Aligned_cols=50 Identities=4% Similarity=0.163 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
........|..+++.|..++..+... ......++.++..|..++......
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~ 413 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKS 413 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444443 233344555555555555555333
No 133
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.38 E-value=1.5 Score=46.41 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
++....+..=|.++|...+.+|...+..+.+.+...
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455566677777777777777777777766654
No 134
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.32 E-value=11 Score=42.56 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
|..|..++..... .-+.......+-.-+....+|+...+..|..+...-.....-. + .+.+..+.++.
T Consensus 167 p~~LKkkfD~IF~-~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~------l-----~i~~~~~ki~~ 234 (1294)
T KOG0962|consen 167 PKNLKKKFDDIFS-ATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLR------L-----NIHSGQRKIEK 234 (1294)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----HHHHHHHHHHH
Confidence 5578877766544 2233344455555555556666666666666644333222111 1 33444777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH-hhhhhhhhhhhhchhhhHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH-KGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~-~~ra~~e~ekk~~~e~~eq~q 202 (285)
.+.++..|..++........++...++.+++.+.++..=..+...+..+++.++..+. -.+.+.+...+-+...-+-+.
T Consensus 235 ~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~ 314 (1294)
T KOG0962|consen 235 SKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLE 314 (1294)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHH
Confidence 8888888888877777777777777777776666544333333344444444444333 122233344555555555566
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 023255 203 IMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 203 ~meknli~ma~e~ekLrael 222 (285)
.|+..+..+-+++.+|-.+.
T Consensus 315 ~~~~~~~~~e~~~~~l~~e~ 334 (1294)
T KOG0962|consen 315 EMGEKLRELEREISDLNEER 334 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 67777777777666665443
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.22 E-value=4 Score=36.66 Aligned_cols=96 Identities=11% Similarity=0.210 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~ 201 (285)
+..+..+..+..+...|..-.+.+..++..|.++|..+..|-..+..+++.+..+.+++..++-..+--.-.+......+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhHHHHHHHHHH
Q 023255 202 EIMEKNIISVAQQIER 217 (285)
Q Consensus 202 q~meknli~ma~e~ek 217 (285)
..+...+.++..||..
T Consensus 124 deL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777778777643
No 136
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=8.7 Score=42.45 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQD-------------NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~d-------------nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k 110 (285)
|+.+..++.....+.+..... ..-.+..+..|+.+...++-+..+-+.... |..++..-+.
T Consensus 162 YeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhv------E~~i~k~~~e 235 (1141)
T KOG0018|consen 162 YEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHV------EACIEKANDE 235 (1141)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHhhhhHH
Confidence 667776666655532222211 112355566666666666655555443333 2222224444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hc--cHHHHHHHHHHHHHHHHhhhhhh
Q 023255 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SK--DMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 111 ~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~q--kl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
...+.++ +..++..+.....++.......-....+++.+.+.+.+.... .+ .+-.++.+...++..+...+..+
T Consensus 236 ls~~~~e---i~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i 312 (1141)
T KOG0018|consen 236 LSRLNAE---IPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDI 312 (1141)
T ss_pred HHHHhhh---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhH
Confidence 4444444 222233333333333333333334444555555555555544 22 22334455566667777777777
Q ss_pred hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
+-=++.+..+-+.++.++|.++++..=-+-+-.|+
T Consensus 313 ~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei 347 (1141)
T KOG0018|consen 313 ETAKKDYRALKETIERLEKELKAVEGAKEEFEKEI 347 (1141)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888887665444444444
No 137
>PF13514 AAA_27: AAA domain
Probab=94.17 E-value=11 Score=41.74 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 147 aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
..+..|...+.+.+....++..+..+++.+++++..+...++.-
T Consensus 784 ~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 827 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEEL 827 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555556666666666666665555554433
No 138
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.15 E-value=8.5 Score=40.18 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=10.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 023255 202 EIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 202 q~meknli~ma~e~ekLrael~ 223 (285)
.+-.+=+.-|..=|.|-++||.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~ 508 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIE 508 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333334445555555555553
No 139
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.14 E-value=2.2 Score=37.11 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=10.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~r 184 (285)
..++..+...++.+.+++..++
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 140
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=6.5 Score=40.75 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 64 DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 64 dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
+-..|-.+...|+-++++++|||..++..++...+-+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQH 80 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666666666666544443
No 141
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.07 E-value=4.8 Score=44.17 Aligned_cols=110 Identities=20% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH---HHHHHHHHHHhhhhHHH---
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER---DAEVRELYEKSLKLDAE--- 117 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~---e~~~r~L~~k~~kleae--- 117 (285)
-+.|+-.|+..+..|..+-.+..-.+.....|+++|+..+-++..+.+-+...-.+. ++++-++-.=.-++|+=
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 336777777777777777777777778888888888888888888877777665553 11111110000111110
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 ----LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 118 ----lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
+-..+-+|..+..++.+-+-|....+.|.++++.++
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 111223566666666666666666666666666655
No 142
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=8.7 Score=41.35 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhH
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknl 208 (285)
.-...||+.|+++|+......-+---.++++-+|++.|..+.
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 334445555555555555554444444555555666555444
No 143
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.03 E-value=4.8 Score=40.08 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=75.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Q 023255 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---------------------------- 160 (285)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~---------------------------- 160 (285)
+|.+..-+=+++.++-+.-|.+|+.+-++|.+.-|||...+ ..+|.++.
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRL---aaEItrLRtlltgdGgGtGsplaqgkdayELEVLLR 515 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRL---AAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLR 515 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---HHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHH
Confidence 44444444478888889999999999999999999886543 23333332
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 161 DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 161 ~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
...+.|.-|++||..||-||+.+-.+-.|=...+.+.+-.+-...- .--.+|+.|...|
T Consensus 516 VKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKa---kadcdIsrLKEqL 574 (593)
T KOG4807|consen 516 VKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKA---KADCDISRLKEQL 574 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH---hhhccHHHHHHHH
Confidence 1234567889999999999999988888887777777654432110 1123888888777
No 144
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.02 E-value=7.2 Score=38.90 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh------------------hccHHHHHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCV-------IKQEMIKDLNEINGDLAKARDE------------------SKDMAAIKAEIETER 177 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~-------~rqeL~aevq~LekDL~~~~~d------------------~qkl~aLkaEIe~Lr 177 (285)
.++.++.+++.++..+.. ..+++..++..+++.+.+.-.. ..++..++.+++.++
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 330 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLE 330 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555543 2344555566666555443111 123344444444444
Q ss_pred HHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 178 QEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 178 qEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
.++..++..++.-+ +.+.+.-.-+..+..+.||++-.+.-....-+|
T Consensus 331 ~~~~~l~~~~~~~~----~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 331 ARVAELTARIERLE----SLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333222 122233344666777778887777666655544
No 145
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.99 E-value=0.25 Score=43.84 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
..+...+.+++.|+.++...+.++..++-.++.++.+.... ...|..|+.++..|+.++..+...++.-.|.+..+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444322 44455666666555555555555544444444443
Q ss_pred hHHHH
Q 023255 198 HEQRE 202 (285)
Q Consensus 198 ~eq~q 202 (285)
...+.
T Consensus 150 ~DE~~ 154 (194)
T PF08614_consen 150 QDELQ 154 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 146
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.98 E-value=7.5 Score=38.98 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVA----ASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDR------------- 130 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i----~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~q------------- 130 (285)
+......|+++-...+--|..|.... ..++.|+|.-+-.|..|+.|||+|-|-. ...++|
T Consensus 163 lm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~L---q~KlDqpvs~p~~prdia~ 239 (552)
T KOG2129|consen 163 LMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYL---QKKLDQPVSTPSLPRDIAK 239 (552)
T ss_pred HHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcccCCCchhhhhc
Confidence 44444455555444444333333222 3456678888888989999999884433 222322
Q ss_pred ---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHH
Q 023255 131 ---VR-ADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME 205 (285)
Q Consensus 131 ---lr-~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~me 205 (285)
.+ .+...+....+-|.++|.++.+++.+++.. .-|+..+.+|=..++.|..++..-+ .+.||
T Consensus 240 ~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL-------------~~e~e 306 (552)
T KOG2129|consen 240 IPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL-------------INELE 306 (552)
T ss_pred CccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------HHHHH
Confidence 11 122344555667788888888888887766 5566666666555555554443221 13455
Q ss_pred Hh--HHHHHHHHHHHHH
Q 023255 206 KN--IISVAQQIERLQA 220 (285)
Q Consensus 206 kn--li~ma~e~ekLra 220 (285)
+- |-.|-.|-|++-.
T Consensus 307 rRealcr~lsEsessle 323 (552)
T KOG2129|consen 307 RREALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHhhhhhHHHH
Confidence 55 6667777777643
No 147
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.98 E-value=9.3 Score=40.06 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHhHHHHHHHHHHHhhhhHHH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA-------ASVKAERDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i-------~~~~ae~e~~~r~L~~k~~kleae 117 (285)
..|..++..+...++..+.+|+.|..-.......|.-....++++.... ..+.+++..-.|.
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA----------- 158 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA----------- 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-----------
Confidence 3445555555556666666677766555444445554444455544332 2233333222232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
+.-+..+|..|..++.-...|....-+|+..++
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 233456666666666655555555544444443
No 148
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.97 E-value=6 Score=37.80 Aligned_cols=74 Identities=16% Similarity=0.370 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHH
Q 023255 142 KQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekL 218 (285)
-.++..+|..|.+.+..+..- ..++.+|.++++.++.+....+.-| .++..+.|..-..|+.+-++++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki-------~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI-------QELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665522 5556666666666665555544443 345566677777777777777666
Q ss_pred HHHH
Q 023255 219 QAEL 222 (285)
Q Consensus 219 rael 222 (285)
|.+.
T Consensus 206 Rkea 209 (294)
T COG1340 206 RKEA 209 (294)
T ss_pred HHHH
Confidence 6554
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.88 E-value=3.3 Score=34.50 Aligned_cols=63 Identities=14% Similarity=0.390 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023255 117 ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (285)
Q Consensus 117 elr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqE 179 (285)
+++.+..+|.++..++.++..+..........+...+.....-... ...+..++..++.|..+
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777666666666666665555554444 45555555555555443
No 150
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.79 E-value=7.5 Score=39.98 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
+|-|+.+...+..-+.-+...++++.....-|..+|..+.+--.=...+.+......++|+.+.+.+...-.-++-.+.+
T Consensus 297 lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~ 376 (570)
T COG4477 297 LEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVA 376 (570)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 35555555555555666777777777777777777777776655445567888888888999988888888888888888
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
+.+..+-++-.++-|-..-.+.++++..|..-.|
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888888888888887777777777776655543
No 151
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.79 E-value=11 Score=42.21 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=3.8
Q ss_pred EeecCC
Q 023255 10 TTLHNH 15 (285)
Q Consensus 10 vtf~p~ 15 (285)
.||.+.
T Consensus 400 fTy~~~ 405 (1317)
T KOG0612|consen 400 FTYTHE 405 (1317)
T ss_pred eeeccc
Confidence 677653
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.76 E-value=4.1 Score=43.35 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.8
Q ss_pred ccCceEE-EeecCC
Q 023255 3 IYGNSLH-TTLHNH 15 (285)
Q Consensus 3 ifG~tli-vtf~p~ 15 (285)
+||.+|| +|.+.+
T Consensus 451 ~lg~sll~lts~~e 464 (717)
T PF10168_consen 451 VLGYSLLALTSSGE 464 (717)
T ss_pred CCCceEEEEccCCc
Confidence 4899988 555444
No 153
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.72 E-value=0.018 Score=60.45 Aligned_cols=114 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ 183 (285)
+|+-.+|..|+|+++.....=-.++..++..++.|......|...+..++.++.++. +++..++.+++++..+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-------~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-------ALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH
Confidence 455567777888885554443345556666666666666667677777776665544 4555555555555555
Q ss_pred hhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 184 ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
......+++..-........++.-+.++.+|.+.|..|..+
T Consensus 376 e~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~ 416 (713)
T PF05622_consen 376 EQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS 416 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444555555555555666666666665543
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.64 E-value=0.93 Score=41.03 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
..++..|...+.++..+...+.+...+.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445666666677777666666544443
No 155
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.47 E-value=2.9 Score=38.28 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.+..+.....++..++..|...+.+. ..++...+..++.+++.+...+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~---~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERL---RKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444432 23344455555555555555555554
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.46 E-value=1.9 Score=39.08 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
++++..+++.++..+......|.++...+.++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 157
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=93.29 E-value=3.2 Score=36.07 Aligned_cols=91 Identities=11% Similarity=0.219 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh-hccHHHHHHHH-HHHHHHHHhhhhhhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD-LAKARDE-SKDMAAIKAEI-ETERQEIHKGRAAIEC 189 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD-L~~~~~d-~qkl~aLkaEI-e~LrqEl~~~ra~~e~ 189 (285)
+++.++...+..+.|...++++.++ ...+...+.+.|..| -.+..++ ..+.+++.+++ ..|.++++......+
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~---~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~- 120 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNE---EIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAK- 120 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444444455555555444443332 222223333334333 3344444 55555555555 455666666666666
Q ss_pred hhhhchhhhHHHHHHHHhHH
Q 023255 190 EKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 190 ekk~~~e~~eq~q~meknli 209 (285)
+-+.+..+++--|--|++
T Consensus 121 --~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 121 --QFRTNKSEAIIKLAVNII 138 (155)
T ss_pred --HHHHhHHHHHHHHHHHHH
Confidence 344444555555555544
No 158
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.29 E-value=0.024 Score=59.65 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQA 220 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLra 220 (285)
+.+.+...||+-......|+.+||.
T Consensus 254 ~ql~~i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 254 EQLAHIRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.28 E-value=4.6 Score=41.40 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=37.2
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
+..+..+...++.+++++..+...-+ .-.++-++....++.+...|.++-+.|...+..
T Consensus 321 g~s~e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 321 GASVEEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777776544333 223344556666777777777777777776443
No 160
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=93.26 E-value=0.051 Score=45.06 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=24.9
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCcccccc
Q 023255 241 STSYAASYGNPDPGFGGSLYADPYSMHQVSA 271 (285)
Q Consensus 241 ~~~y~~~~gn~~~~~~~~~y~~~y~~~~~~~ 271 (285)
..+||.+|| +.||++|+||.+|+.|.+|.
T Consensus 74 ~~sYgtsYg--~ggyGsnaYG~~~~~n~yqs 102 (132)
T PF04626_consen 74 VQSYGTSYG--GGGYGSNAYGVQRSVNSYQS 102 (132)
T ss_pred ecccceeec--CCcccccccCCCcCcccccc
Confidence 368888888 66999999999999998875
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.20 E-value=15 Score=39.92 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
....+..+...+.-.+..+..|......+.-......+ .......++..+.....+...+..+..++..+.....++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 350 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444333322222 11222222222333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhhh-hccHHHHHHHHH-------HHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHH
Q 023255 148 DLNEINGDLAKARDE-SKDMAAIKAEIE-------TERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQ 219 (285)
Q Consensus 148 evq~LekDL~~~~~d-~qkl~aLkaEIe-------~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLr 219 (285)
......+-+.+.... ..++..+..++. .+...++........-.....+..++....++.+....+++++++
T Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~ 430 (908)
T COG0419 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELE 430 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323333333332222 222333333333 334444444555555555666667777777777777888888888
Q ss_pred HHHHhHHhhH
Q 023255 220 AELANAEKRA 229 (285)
Q Consensus 220 ael~n~e~r~ 229 (285)
.++.+.+..-
T Consensus 431 ~~~~~~~~~~ 440 (908)
T COG0419 431 EEIKKLEEQI 440 (908)
T ss_pred HHHHHHHHHH
Confidence 8777776443
No 162
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.16 E-value=13 Score=39.32 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 140 VIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 140 ~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
..-..|+.+++.|+++|+...+. .+.|.....|-+.|++++.+...+++-.
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556777888888877776642 5667777778888888888888877754
No 163
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.14 E-value=6.3 Score=38.43 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
.+++|-++++..++.+...+.|...+.+.|.+|+.+.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666553
No 164
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.06 E-value=6.5 Score=35.45 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhhhhHHHHHHHHHH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA-SVKAERDAEVRELYEKSLKLDAELRVIESM 124 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~-~~~ae~e~~~r~L~~k~~kleaelr~~e~l 124 (285)
.|+.-+.....+|...-...-+..+....+++++.-.+..+.....+.. .++...|---|+. +......
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~A----------l~~k~~~ 97 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAA----------LIEKQKA 97 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----------HHHHHHH
Confidence 3333333333334333334444555566666777666666666644433 3444455555555 3333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
...+..+...+..+.....+|..++..|++.+.+++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555554444443
No 165
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.05 E-value=7.8 Score=36.32 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHhH
Q 023255 207 NIISVAQQIERLQAELANA 225 (285)
Q Consensus 207 nli~ma~e~ekLrael~n~ 225 (285)
++-..-..++..+..+.++
T Consensus 187 ~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 187 EVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3333334444444444433
No 166
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.05 E-value=1.7 Score=36.23 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=34.4
Q ss_pred hhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 182 ~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
....|+++-++.-..+-+++..+++++.....+++.++..+.....
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777788888888888888888888887765543
No 167
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.03 E-value=14 Score=39.14 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=42.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhh------hhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAA------IECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~------~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
.+.++.|.......+.++.++|.. ...|.+.....+-+...|+-.+...==|.++|.++|
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556677777777777777755543 345667777777777788888777777888888877
No 168
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=92.96 E-value=2.5 Score=39.83 Aligned_cols=65 Identities=14% Similarity=0.283 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHHhhh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM----AAIKAEIETERQEIHKGR 184 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl----~aLkaEIe~LrqEl~~~r 184 (285)
++..+..++.+.+..+..+.+....|.++|++-..||.+.+.-.+.| |+-..|-+.|..||+++=
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888888888888888876654433 777788888888777653
No 169
>PRK11519 tyrosine kinase; Provisional
Probab=92.91 E-value=3.4 Score=43.63 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
...+..=|+++|...+.+|...+..+...+...
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555677777777777777777776666553
No 170
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=92.89 E-value=5.6 Score=37.52 Aligned_cols=97 Identities=18% Similarity=0.351 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
+..--..|+.-+.....+++.++..+.++.++. ..||+. ++.-+.|++..+..++.|++.|--..+
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de-----------~~Le~K---Iekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE-----------ANLEAK---IEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 344445666667777777777777777766664 133444 777889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-hcc---HHHHHHHHHHHHH
Q 023255 148 DLNEINGDLAKARDE-SKD---MAAIKAEIETERQ 178 (285)
Q Consensus 148 evq~LekDL~~~~~d-~qk---l~aLkaEIe~Lrq 178 (285)
+-..++.||++.=.. ..| +.-|+.+++....
T Consensus 226 EyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 226 EYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999987766 555 4667777765543
No 171
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.88 E-value=5.2 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=10.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 61 LLQDNQRLAATHVALKQELSLAEQELRH 88 (285)
Q Consensus 61 lL~dnqrla~~h~~LqqEL~laqhEL~~ 88 (285)
+|...++-......|...+.....++..
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~ 70 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIER 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333333333333333333333
No 172
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.86 E-value=14 Score=38.66 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE------------SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d------------~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~ 194 (285)
||.-+-.++...++..-.|..++..|...+...+++ +++|.....+|..|-.++++.+++.-.| .
T Consensus 236 ev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e---~ 312 (629)
T KOG0963|consen 236 EVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE---R 312 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344444445555555555555555555555555433 2233444455555555555555554333 3
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 195 ASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 195 ~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
..+..|.++.|+-+-+.-.++|+|+..|.+
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888888888888888888877744
No 173
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.79 E-value=8 Score=35.75 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMH 125 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk 125 (285)
.|+.+|...+.+..+--......-.+...|..++..++.+-..|.........+ +..|-....+.+ ...+.|.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~----~~rL~~~~~~~~---eEk~~Le 81 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEE----KQRLEEEAEMQE---EEKEQLE 81 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHH
Confidence 456666666655555555555555566666666666666666665544433222 222311222222 2244566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
.++..+..+|..|....+.-..++..+..++...+.+
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666665544
No 174
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.78 E-value=0.031 Score=60.09 Aligned_cols=106 Identities=15% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR----DESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~----~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
...|.++.+++..-...+.++....+.|+.||.++. ..+..-..+...|..+...+..+...++.....+-+..++
T Consensus 524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~ 603 (859)
T PF01576_consen 524 QRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQ 603 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444455555554443 2244456777888889999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023255 201 REIMEKNIISVAQQIERLQAELANAEKRAR 230 (285)
Q Consensus 201 ~q~meknli~ma~e~ekLrael~n~e~r~~ 230 (285)
...+|+-+..|..|++-++..+..+++--+
T Consensus 604 ~~~~e~r~~~l~~elee~~~~~~~a~r~rk 633 (859)
T PF01576_consen 604 LAVSERRLRALQAELEELREALEQAERARK 633 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874433
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.77 E-value=7.7 Score=35.49 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
+..++..+.+++.++........++...++.....+
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333
No 176
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.77 E-value=0.031 Score=58.74 Aligned_cols=101 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhh----------hccHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEM----------IKDLNEINGDLAKARDE----------SKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL----------~aevq~LekDL~~~~~d----------~qkl~aLkaEIe~LrqEl~ 181 (285)
+.++.++..++.++++.....++| ..+|+.|+.++.....+ ..+++.|.++...++.|+.
T Consensus 195 ~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk 274 (722)
T PF05557_consen 195 EELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELK 274 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444554444444444444 45555555544443332 4556778888888888888
Q ss_pred hhhhhh------hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 182 KGRAAI------ECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 182 ~~ra~~------e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
++|... +.|+..-...++.+..++..|..+=-|+++|..|+
T Consensus 275 ~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el 321 (722)
T PF05557_consen 275 HLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDEL 321 (722)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877643 34555555555666666666666655666666655
No 177
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.72 E-value=13 Score=37.90 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 80 SLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLD-----------------AELRVIESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 80 ~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kle-----------------aelr~~e~lk~El~qlr~eiq~l~~~r 142 (285)
...+..|+.+...+..-...-...+-..+.+..++| ..++....+...+.-++.......++-
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el 237 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAEL 237 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444444333333333444556666666 334445555555555555555555555
Q ss_pred HHHHHHHHHHHH----HHHHHhh----h-hcc------HHHHHHHHHHHHHHHHhhhhhhh
Q 023255 143 QEMIKDLNEING----DLAKARD----E-SKD------MAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 143 qeL~aevq~Lek----DL~~~~~----d-~qk------l~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.++..+...+-+ =+..++. + .+. ++.|+.|.+.++.+++.++..|+
T Consensus 238 ~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~ 298 (511)
T PF09787_consen 238 QQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIE 298 (511)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 555533322222 2222222 1 111 78888888888888888888873
No 178
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.71 E-value=14 Score=38.18 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 145 MIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
+..+++.+++.+...... .-.+...+..++.+..+|..+-..+|.|-+++..--+....+..-+-.+......|..|+
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~ 329 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL 329 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666655 446788888888999999999999999999988888888888888888777777777777
Q ss_pred HhHH
Q 023255 223 ANAE 226 (285)
Q Consensus 223 ~n~e 226 (285)
....
T Consensus 330 ~~v~ 333 (560)
T PF06160_consen 330 ERVS 333 (560)
T ss_pred HHHH
Confidence 5443
No 179
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.71 E-value=6.4 Score=34.39 Aligned_cols=16 Identities=19% Similarity=0.464 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHH
Q 023255 211 VAQQIERLQAELANAE 226 (285)
Q Consensus 211 ma~e~ekLrael~n~e 226 (285)
+..||..||++|++++
T Consensus 136 i~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 136 IDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557778888887766
No 180
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.64 E-value=8.3 Score=35.56 Aligned_cols=140 Identities=18% Similarity=0.177 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
|..+.-.+.....+++.........-.....+..++.....++.-|......+. +....
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~---------------------~~~~~ 77 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVS---------------------RKAQQ 77 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence 334555555555555555555444444444444555555555555544443222 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccHHHHHHHHHHHHHHH-----Hhhhhhhhhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-----ESKDMAAIKAEIETERQEI-----HKGRAAIECEKKN 193 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~-----d~qkl~aLkaEIe~LrqEl-----~~~ra~~e~ekk~ 193 (285)
+...........+.|....+.+...|+.|-.++..+.. ....++...+|++.|=+++ ...+..-+.|++.
T Consensus 78 l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~ 157 (264)
T PF06008_consen 78 LNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKE 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34444444444444444444455555555555555444 3666777777777776666 4556677778877
Q ss_pred chhhhHHHHHH
Q 023255 194 RASNHEQREIM 204 (285)
Q Consensus 194 ~~e~~eq~q~m 204 (285)
-.+++.+++.-
T Consensus 158 A~~LL~~v~~~ 168 (264)
T PF06008_consen 158 AEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 181
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=92.57 E-value=3.9 Score=38.46 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=39.9
Q ss_pred EeecCC-----CcccccCCccCCCCC------------CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023255 10 TTLHNH-----SQFTMSGRRVLREPP------------LSTRALPPQHSPSLHHLEDRIAIQHSDIQSLLQDNQRLAATH 72 (285)
Q Consensus 10 vtf~p~-----rsvTleGD~ydpeG~------------LsGGs~p~~~~~l~n~Lee~L~~q~~EIq~lL~dnqrla~~h 72 (285)
+||..+ -+||-+|+.-.|... |+=|.+| +++.++.+........+-|+....+...
T Consensus 94 lTC~~~~~s~Gv~l~fnGlddepG~~IVDC~~~~~isdLgv~vg~--g~v~~~~~~~~~~ekd~~i~~~~~~~e~----- 166 (264)
T PF07246_consen 94 LTCIGSLGSEGVSLDFNGLDDEPGHNIVDCDTFKIISDLGVGVGD--GRVDYEELKKEAEEKDQLIKEKTQEREN----- 166 (264)
T ss_pred eeecCCCCcceeEEecCCCCCCCCCeeEecCCCCEeeeccccccc--ccccHHHHHHHHHHHHHHHHHHhhchhh-----
Confidence 566554 677778875444332 2222222 2344555555443333334433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
..+-+.++|+++.+...+.+.+.+
T Consensus 167 ---d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 167 ---DRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred ---hhHHHHHHHHHHHhhhhHHHhhch
Confidence 344455567777776666655555
No 182
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.57 E-value=17 Score=39.08 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhHhHHHHHHHHHH
Q 023255 51 IAIQHS-DIQSLLQDNQRLAATHVALKQELSLAEQELRHLS--------------SVAASVKAERDAEVRELYE 109 (285)
Q Consensus 51 L~~q~~-EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~--------------~~i~~~~ae~e~~~r~L~~ 109 (285)
|..||. -.+.-...+.+.-+...+|+++|+.+.+.--.++ +++...+-|+|..|.+.+-
T Consensus 4 lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~ 77 (769)
T PF05911_consen 4 LVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVA 77 (769)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555 3344456677777888888888887765544333 4444555566666655543
No 183
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.37 E-value=14 Score=37.58 Aligned_cols=98 Identities=9% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDE----------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~~~~d----------~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
..+..+...+++|..+-+.|-.++=+-++. .+=|.-|+..|+..++.+. ..+..+.+.+..+.+|.+
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~ 175 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIR 175 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334445555555666666655555443322 1113444555555554444 233457788899999998
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh-HHhh-HHHHH
Q 023255 203 IMEKNIISVAQQIERLQAELAN-AEKR-ARAAA 233 (285)
Q Consensus 203 ~meknli~ma~e~ekLrael~n-~e~r-~~a~~ 233 (285)
.|-.--..|..|..+|--=|-. ...| .||-.
T Consensus 176 ~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~ 208 (475)
T PRK10361 176 NLQQLNAQMAQEAINLTRALKGDNKTQGNWGEV 208 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHH
Confidence 8877778888899888777743 3444 45543
No 184
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=18 Score=38.83 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 198 HEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
.++.+-+.|-+.....++-.||.+|.-.
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~ 802 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGR 802 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5677888899999999999999998654
No 185
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.23 E-value=10 Score=40.48 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHH--H--
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI--E-- 122 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~--e-- 122 (285)
|.++|+.+..|+...+. -|..+..|+..|...+.|++..+... ..--..|.||+.||-.|+... +
T Consensus 460 L~e~IeKLk~E~d~e~S----~A~~~~gLk~kL~~Lr~E~sKa~~~~-------~~~~~~L~eK~~kLk~Efnkkl~ea~ 528 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYT----EAVIAMGLQERLENLREEFSKANSQD-------QLMHPVLMEKIEKLKDEFNKRLSRAP 528 (762)
T ss_pred HHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHhccccc-------ccccHHHHHHHHHHHHHHHHhhhccc
Confidence 56666666666655543 46677888888888887777753211 011123556666666654222 2
Q ss_pred ---HHHHHHHHHHHHHH
Q 023255 123 ---SMHAELDRVRADIE 136 (285)
Q Consensus 123 ---~lk~El~qlr~eiq 136 (285)
.++..++-|++..+
T Consensus 529 n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 529 NYLSLKYKLDMLNEFSR 545 (762)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45555555555554
No 186
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=92.17 E-value=9.1 Score=37.46 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhHhHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 74 ALKQELSLAEQELRHLSSVAAS--VKAERDAEVRELYEKSLKLDAELRV----IESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 74 ~LqqEL~laqhEL~~l~~~i~~--~~ae~e~~~r~L~~k~~kleaelr~----~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
.+.+.|....+++..+...-.. ...+.+..|-+||+..-+++.-.-. ++-|+ -|..+|.++.........|..
T Consensus 265 ~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~le~ 343 (388)
T PF04912_consen 265 SIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSELES 343 (388)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444332222 2345667788888888887765322 22232 444555555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 023255 148 DLNEINGDLAKAR 160 (285)
Q Consensus 148 evq~LekDL~~~~ 160 (285)
....|..+|..|.
T Consensus 344 ~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 344 QQSDLQSQLKKWE 356 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 187
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.13 E-value=17 Score=37.98 Aligned_cols=44 Identities=14% Similarity=0.349 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhh
Q 023255 141 IKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 141 ~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~r 184 (285)
.|..|..++..+......-..+ ..+++.++.+++.+..|++...
T Consensus 420 ~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Ke 467 (594)
T PF05667_consen 420 HRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKE 467 (594)
T ss_pred HHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554333322211 2334455555555444444433
No 188
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.12 E-value=16 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 205 EKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 205 eknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
......|.+++|+-=.+ +|+++|+--
T Consensus 162 ~~~~~~~~~~~~~~~~~--~a~~~a~~i 187 (514)
T TIGR03319 162 RHEAAKLIKEIEEEAKE--EADKKAKEI 187 (514)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34444455555442222 445555443
No 189
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.11 E-value=16 Score=37.54 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
...|.++..+.+..+..+..+..-|.+...+|+..|..-.+. |..++.....+.+--.|..+++....-.+
T Consensus 339 ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqt---L~~rL~e~~~e~~~~~r~~lekl~~~q~e------ 409 (531)
T PF15450_consen 339 LDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQT---LNLRLSEAKNEWESDERKSLEKLDQWQNE------ 409 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 567888888888888888888888999999999998765554 55667777777777777775555333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e 196 (285)
+.+.+..++..+..+-....++..++..+..|+.- - ...-++..-+|..+|+||..+-..+-|-|-+++-
T Consensus 410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~---kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDT---KIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 33344444444555555555566666555555432 2 4455788899999999999999999999887776
No 190
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.10 E-value=5.5 Score=37.80 Aligned_cols=93 Identities=22% Similarity=0.286 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHH-----
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR----- 201 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~----- 201 (285)
.|+.+...+++|..+++.=.=++.+++.-|++ --+|.+.-+.++-.|+.|.+.+...|+..-|.+..+..-+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqK---QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQK---QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 44445555555555566556666666666554 3566777777778888888888888877777776665433
Q ss_pred --HHHHHhHHHHHHHHHHHHHHH
Q 023255 202 --EIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 202 --q~meknli~ma~e~ekLrael 222 (285)
.-+|.-|.+--..||+|-.||
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.09 E-value=6.1 Score=36.25 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEI 173 (285)
.+..++.++..++..|....+.+...+...+++|.+++.....+...+.+|
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444
No 192
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.09 E-value=7.9 Score=36.84 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 78 EL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
.|.--.-||.-|..++...+.+= |-|-.-+.||.|.- .+.++||.||+.-|+.+.+..- .+=+.|.|=..
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDW------IEEECHRVEAQLAL-KEARkEIkQLkQvieTmrssL~---ekDkGiQKYFv 152 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDW------IEEECHRVEAQLAL-KEARKEIKQLKQVIETMRSSLA---EKDKGIQKYFV 152 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc---hhhhhHHHHHh
Confidence 34444555666666666555555 66667777888754 4455688888887776555443 33333333222
Q ss_pred HHhhhhccHHHHHHHH
Q 023255 158 KARDESKDMAAIKAEI 173 (285)
Q Consensus 158 ~~~~d~qkl~aLkaEI 173 (285)
+.+-.+.||..|-.-.
T Consensus 153 DINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 153 DINIQNKKLESLLQSM 168 (305)
T ss_pred hhhhhHhHHHHHHHHH
Confidence 2333455555554433
No 193
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.01 E-value=4.5 Score=37.61 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=31.5
Q ss_pred hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023255 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~ 230 (285)
|--|.-+.|+=+++....+.+..+-+||++||++=.+-=.+-|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777788888888888899999999999555433343
No 194
>PF15294 Leu_zip: Leucine zipper
Probab=91.97 E-value=11 Score=35.65 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh-----hhhhhhchhhhHHHHHHHHhHHHHHHH
Q 023255 141 IKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI-----ECEKKNRASNHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 141 ~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~-----e~ekk~~~e~~eq~q~meknli~ma~e 214 (285)
...+|..++..+..++.+.-.| .+..+.|+..|...++++-+..... |.|||.+. .-+-.-|-+=|..=.-+
T Consensus 191 ~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq--T~ay~NMk~~ltkKn~Q 268 (278)
T PF15294_consen 191 DLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQ 268 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc--cHHHHHhHHHHHhccHH
Confidence 3456777788888888887777 7788999999999888888877664 56666653 45555554444444447
Q ss_pred HHHHHHHH
Q 023255 215 IERLQAEL 222 (285)
Q Consensus 215 ~ekLrael 222 (285)
|--||-.|
T Consensus 269 iKeLRkrl 276 (278)
T PF15294_consen 269 IKELRKRL 276 (278)
T ss_pred HHHHHHHh
Confidence 77777665
No 195
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.96 E-value=14 Score=36.75 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 023255 178 QEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (285)
Q Consensus 178 qEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrae 221 (285)
.+|..-.+-||-+-+.-+-.-++.|+-++-|.+.+.-...+-.+
T Consensus 189 ~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~ 232 (499)
T COG4372 189 LDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334466666666666666777777776665544444333
No 196
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.88 E-value=16 Score=37.18 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 111 ~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.....+.+......+.++.+++.++..+.....++.++...++..+..-+.. ..|+..|..--+.|+.+...+-..|=.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 45 LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666666666666666666666666666666655544 556666666566666666666665555
Q ss_pred hhhh
Q 023255 190 EKKN 193 (285)
Q Consensus 190 ekk~ 193 (285)
+|..
T Consensus 125 ~k~~ 128 (475)
T PRK10361 125 HSNR 128 (475)
T ss_pred HHHH
Confidence 5433
No 197
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.87 E-value=2.6 Score=31.76 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
+..++..+..+...+.......+.|..+=.....-|... -..+..|+.|++.+++|+.+.|+
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a---~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDA---YEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555444444444444333333333332 23345577777777777766553
No 198
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=16 Score=36.95 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
.+++.++-..|...+.||.+......+|..++.++..-|++
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555566666666666666666666666666655554
No 199
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.74 E-value=22 Score=38.56 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L 107 (285)
.+.+|+.+...+..|.-+-..++++-.+..+||.-++.++.++.-.+-.+.+..+.-+...-+|
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5678888887777777777777777777777777777777777777777766666544433333
No 200
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.73 E-value=20 Score=37.91 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
+.......-|..+|...+.+|...+..+...+..+
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445667788888888888888888888887753
No 201
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=91.64 E-value=1.5 Score=37.88 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.....++...++....+...+..|..++....+.|..|+....-..+|+++|+.|+.+.......++
T Consensus 9 ~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 9 AENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788888888889999999999888788888899999988888875544433
No 202
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.45 E-value=2.9 Score=36.03 Aligned_cols=63 Identities=17% Similarity=0.393 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
...+..+|.+++.++..+....+.|.+++..|.+.+.- .+ ..++..|+.|++.|...|..++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666555555555555555544322 11 34445555555555555555554
No 203
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.40 E-value=9.1 Score=36.33 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
..++.|..-+......+...++.|+-+++.-+..+.=+ ..++...+..|+.|-+++.+++..+|-
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l---EgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL---EGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333322221 344444555555555555555554443
No 204
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=91.33 E-value=1.2 Score=46.09 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.|.+.+++.=+..+..|+.++.++||+|..+|..+. .|+.+|+.+|..-++||.++...||
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n----------~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEIN----------TKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 444566666666778888888899999988887765 4566666777666666666655554
No 205
>PRK12704 phosphodiesterase; Provisional
Probab=91.09 E-value=20 Score=36.76 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 204 MEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 204 meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
.......|.+++|.-=.+ +|+++|+--
T Consensus 167 ~~~~~~~~~~~~~~~~~~--~a~~~a~~i 193 (520)
T PRK12704 167 ARHEAAVLIKEIEEEAKE--EADKKAKEI 193 (520)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 334444555555443222 345555443
No 206
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.82 E-value=1.7 Score=37.27 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 147 aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
++-..|...+..-..|.++|.+|.+||..|+++|...|..+
T Consensus 72 aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 72 SKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455566778899999999999999988777643
No 207
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=5.9 Score=34.07 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=42.6
Q ss_pred hhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023255 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (285)
Q Consensus 182 ~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a 231 (285)
....|+|+-||...++-.-.+.|+.+|--+++.+..++.++.-.-.+..+
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999766665544
No 208
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.74 E-value=33 Score=38.71 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLD 115 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kle 115 (285)
-++...+..+-++..+....+|+.|-..+.+.-.. .=.+|+++.++.++||
T Consensus 1452 Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~ 1505 (1758)
T KOG0994|consen 1452 AQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALE 1505 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 34455556666677777777777777666654332 2234555655555554
No 209
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.74 E-value=2.1 Score=39.80 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~m 204 (285)
++..+|++|+..+++++..++..++--|+-|..++|..+=+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999987763
No 210
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.69 E-value=29 Score=37.88 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHHHHHH
Q 023255 57 DIQSLLQDNQRLAATH 72 (285)
Q Consensus 57 EIq~lL~dnqrla~~h 72 (285)
.+.+.....++...++
T Consensus 348 ~l~~~~~ear~~~~q~ 363 (980)
T KOG0980|consen 348 QLENLKEEARRRIEQY 363 (980)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3344444434333333
No 211
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.69 E-value=13 Score=34.71 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhh-hccHHHHH----HHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH
Q 023255 146 IKDLNEINGDLAKARDE-SKDMAAIK----AEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 146 ~aevq~LekDL~~~~~d-~qkl~aLk----aEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek 206 (285)
..++...+.++...+++ ..+++.+. .+...+.....+..+........+...+.+..+|..
T Consensus 188 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 188 RAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 33344444444444444 44445555 666666666666666666666777777777777653
No 212
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.69 E-value=20 Score=35.94 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 202 EIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 202 q~meknli~ma~e~ekLrael~n~e 226 (285)
.+-|.-+-=+.+||.-||-||..+-
T Consensus 515 RVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 515 RVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667778888888887663
No 213
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=90.62 E-value=9.9 Score=32.44 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
-+...+...+.+|.+.|....|-|..|+..+...
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~ 53 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKE 53 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777776666533
No 214
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.58 E-value=35 Score=38.60 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 195 ~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
.+.+..++-||-.+.+=-+-++.+-+||+-.++|-+..
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 34556666677666777778888889998888886654
No 215
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.58 E-value=18 Score=35.41 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=14.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 023255 201 REIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 201 ~q~meknli~ma~e~ekLrael~ 223 (285)
....+..+.....++..++.++.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666667777777774
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.57 E-value=19 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLL 62 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL 62 (285)
-..||..|+.+.+++.-..
T Consensus 93 ndklE~~Lankda~lrq~e 111 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNE 111 (916)
T ss_pred hHHHHHHHhCcchhhchhH
Confidence 4577777777766544333
No 217
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.54 E-value=16 Score=34.61 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVI------------KQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~------------rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
..+|.+|.+-...++++... -+.|.+++..|.++=.++..- ..+|..|..|+---|..-..+++.+
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq 259 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ 259 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH
Confidence 45666666666666666543 467889999999888888766 7789999999977777777778888
Q ss_pred hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
+..-+--.++-+-+..|...++-+-.+++.-|-||...+|
T Consensus 260 ~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877888888888888888888877777777765553
No 218
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.50 E-value=3.6 Score=32.70 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
...++..+-.+-.+..++..+++.+.+.+..++.+|..+.+ .+....+|++++..++.++..+...
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~-------~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK-------AGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------TTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666777777777777777766666554 2344455555555555555544443
No 219
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.46 E-value=12 Score=36.62 Aligned_cols=100 Identities=10% Similarity=0.242 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH-
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK- 206 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek- 206 (285)
..++..+.++......-..+|.+-++=|+.--.. .++...++.++..++.+++.+...+..-...-++..+++..+.+
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444333333444444444444432222 44445555555555555555555555555444444444433222
Q ss_pred ------------hHHHHHHHHHHHHHHHHhHHhh
Q 023255 207 ------------NIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 207 ------------nli~ma~e~ekLrael~n~e~r 228 (285)
.|+.+.+=|-|||.||..++-|
T Consensus 317 meerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 317 MEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 2566777788888888877755
No 220
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.41 E-value=17 Score=34.84 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
+...-++++|..++.+|...+..+...+..+- +++=.....+....+..++.++.+++ .++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-----~~d~~~~~~~~~~~i~~L~~~l~~~~--------------~~l 230 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNK-----VFDPKAQSSAQLSLISTLEGELIRVQ--------------AQL 230 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcChHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 45556777777777777777777766666540 10000000001222222222222222 222
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 150 NEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 150 q~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
..+.. .+..+.-++..++++|+.++.+|...+..+
T Consensus 231 ~~l~~---~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 231 AQLRS---ITPEQNPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHh---hCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 222337778888888888888887765544
No 221
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.36 E-value=5.3 Score=35.50 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 137 KLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
.+....++|..++..|.+++..+... ..++..++.++..++..+.+-.-.|
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444555555566666666655544 6677777777777777766654443
No 222
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.33 E-value=14 Score=33.76 Aligned_cols=131 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 023255 82 AEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK--- 158 (285)
Q Consensus 82 aqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~--- 158 (285)
....|..+..++.++...- -.++-.+=+.+-.+...++..|..+...|+.-...|.+....++..-...-.
T Consensus 3 ~~~KL~~i~e~~~~f~~~l------e~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~ 76 (247)
T PF06705_consen 3 TKSKLASINERFSGFESDL------ENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ 76 (247)
T ss_pred hHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --Hhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 159 --ARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 159 --~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
+.+. ..+...+..-++.|-..+..+...+..|+....... |.+..++.++|..|+.-+.+
T Consensus 77 ~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~i------e~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 77 ERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDI------EELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHH
No 223
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.26 E-value=8.3 Score=36.37 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhHH
Q 023255 205 EKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 205 eknli~ma~e~ekLrael~n~e 226 (285)
+..+-+...++++++..+.+..
T Consensus 184 ~~~l~~~~~~l~~a~~~l~~~~ 205 (331)
T PRK03598 184 KASLAQAQAALAQAELNLQDTE 205 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhcCE
Confidence 3334334445566666664444
No 224
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.21 E-value=17 Score=34.38 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI 121 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~ 121 (285)
..|++.+-.++-+.++|..-...++--.|.|.-..|...-.||-|+.-.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555556666666766666666664333
No 225
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=1.3 Score=42.98 Aligned_cols=48 Identities=23% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~ 213 (285)
...|+++++.|.++++.+.+.||--|+.-.|.++...-.+-+=|.++.
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~ 295 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAI 295 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhh
Confidence 345666666677777777777777776666665555554444444444
No 226
>PRK00106 hypothetical protein; Provisional
Probab=90.04 E-value=26 Score=36.26 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023255 205 EKNIISVAQQIERLQAELANAEKRARAAA 233 (285)
Q Consensus 205 eknli~ma~e~ekLrael~n~e~r~~a~~ 233 (285)
......+.+++|.-=.+ +|++.|+--.
T Consensus 183 ~~~~~~~i~~~e~~a~~--~a~~~a~~ii 209 (535)
T PRK00106 183 THEIATRIREAEREVKD--RSDKMAKDLL 209 (535)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 33444455554432222 4555555443
No 227
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.90 E-value=14 Score=32.90 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
...+..+|..+..++..|.....++..++..+++...+... ...+....||+.|+...+++++-++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777777777777777665554332 2234456666666666666655443
No 228
>PRK10869 recombination and repair protein; Provisional
Probab=89.89 E-value=21 Score=36.83 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=45.2
Q ss_pred HHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 154 GDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 154 kDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
..+.++... +.-+.++.+-.+.+++++..+...-+. ..++-.+....++.+...|.++-+.|-+.|.
T Consensus 306 ~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~----l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 306 SKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDD----LETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 667888888888888888776654433 2345566677777888888887777776543
No 229
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.84 E-value=5.2 Score=30.13 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L 107 (285)
+|-+....|+..|..+...+......+..+..|+|.-++.|
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888877777777777776655555
No 230
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=19 Score=37.42 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH----HHHHHHHhHHHHHHHHH---HHHHHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE----QREIMEKNIISVAQQIE---RLQAEL 222 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e----q~q~meknli~ma~e~e---kLrael 222 (285)
.+-|..-.-|.+++|.++.|+.-.+|+-+..--|..- --+.||.-|-+.-.|=| .||-||
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL 252 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKEL 252 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334455567799999999999999987754322211 11345555655555544 255555
No 231
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.76 E-value=16 Score=33.52 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH----HHHHhhhhhhhhhhhhc
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETER----QEIHKGRAAIECEKKNR 194 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lr----qEl~~~ra~~e~ekk~~ 194 (285)
..+..++.++.+++..+-++.+..+.+..++..+..++.++..... .+|.+.-+.|- .+++.+...++-.+...
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~--~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE--LALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888888888775421 23333333333 34445555555566666
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHH
Q 023255 195 ASNHEQREIMEKNIISVAQQIERLQAELANAEKRAR 230 (285)
Q Consensus 195 ~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~ 230 (285)
...-++...|++++..+-.-|..+|+...-..-|..
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888888888766665443
No 232
>PF14992 TMCO5: TMCO5 family
Probab=89.69 E-value=13 Score=35.36 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQAE 221 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLrae 221 (285)
+.++++.- +|++.-+-+|+.|-.-.
T Consensus 158 E~L~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 158 EKLRRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhch
Confidence 34466666 66666666666655443
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.64 E-value=23 Score=36.75 Aligned_cols=58 Identities=7% Similarity=0.172 Sum_probs=35.1
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
+..++.+-+-.+.++.|+..+...-+-.+. +-.+.+.+...+...|+.+-+.|...|+
T Consensus 317 ~~~~~~l~~~~~~~~~el~~L~~~~~~~~~----Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 317 GVTIEDLLEYLDKIKEELAQLDNSEESLEA----LEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777665543332 2334555566666666666666655543
No 234
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.62 E-value=20 Score=38.33 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=5.6
Q ss_pred HHHHhhhhHHH
Q 023255 107 LYEKSLKLDAE 117 (285)
Q Consensus 107 L~~k~~kleae 117 (285)
..++.+||+..
T Consensus 161 ~eer~~kl~~~ 171 (916)
T KOG0249|consen 161 IEERTRKLEEQ 171 (916)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 235
>PRK10698 phage shock protein PspA; Provisional
Probab=89.52 E-value=16 Score=33.22 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHhHHHHHHH-------HHHHhhhhHHHH----HHHHHHHHHHHHH
Q 023255 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA-SVKAERDAEVRE-------LYEKSLKLDAEL----RVIESMHAELDRV 131 (285)
Q Consensus 64 dnqrla~~h~~LqqEL~laqhEL~~l~~~i~-~~~ae~e~~~r~-------L~~k~~kleael----r~~e~lk~El~ql 131 (285)
..-+..+....+++++.-++..+.....+.. .+....|---|+ ..+++..|+.++ ..++.++..+.++
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L 125 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGEL 125 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666544433 344455555555 445555555554 2334556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHH----Hhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 132 RADIEKLCVIKQEMIKDLNEING--DLAK----ARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 132 r~eiq~l~~~rqeL~aevq~Lek--DL~~----~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
+..+.++...+..|.+..+..+. .+++ +..+ .+....++..|+.+-.+..-. . + .....+-.+...
T Consensus 126 ~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~----~-~-~~~~~l~~e~~~ 199 (222)
T PRK10698 126 ENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH----G-F-GKQKSLDQQFAE 199 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh----h-c-cCCCCHHHHHHH
Confidence 66666666666666655544332 2222 1211 233344444444443333221 0 0 111223344444
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 023255 204 MEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 204 meknli~ma~e~ekLrael 222 (285)
+|.+ -.+-.|+++|++.+
T Consensus 200 le~~-~~ve~ELa~LK~~~ 217 (222)
T PRK10698 200 LKAD-DEISEQLAALKAKM 217 (222)
T ss_pred hhcc-chHHHHHHHHHHHh
Confidence 4443 24566777777765
No 236
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.50 E-value=22 Score=37.71 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
....+++|..++.++..+.....++..++..+.+++++.... +..+..++..+...+.... -|+..+-.+.-+
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~~l~~~~----~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKE---SNTLQSDLESLEENLVEKK----KEKEERRKLHNE 308 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344455566666666666666666666666666666553322 2233333333333333322 233444455555
Q ss_pred HHHHHHhH
Q 023255 201 REIMEKNI 208 (285)
Q Consensus 201 ~q~meknl 208 (285)
.+-+.-|+
T Consensus 309 i~eLkGnI 316 (670)
T KOG0239|consen 309 ILELKGNI 316 (670)
T ss_pred HHHhhcCc
Confidence 55555554
No 237
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=89.49 E-value=6.8 Score=40.15 Aligned_cols=116 Identities=25% Similarity=0.290 Sum_probs=73.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023255 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 105 r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~r 184 (285)
+...+|+--||.| ++.++.+++..+..|..|...|++|+.+|-.|+.--+..+.- +-+-+.|+ -.-+.++-
T Consensus 593 kG~Aeki~~me~E---i~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKA---VhdaK~El---A~~Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEME---IGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKA---VHDAKVEL---AAAYSKLL 663 (790)
T ss_pred hhhHhhhhhhhhh---hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHH---HHHHHHHH
Confidence 4466778888888 778888999999999999999999999998877544433221 11112222 11222222
Q ss_pred hhhhh---hhhhchh----------hhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 185 AAIEC---EKKNRAS----------NHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 185 a~~e~---ekk~~~e----------~~eq~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
+-|+. -||.+.- |+.=...|-||-|..+-|-..|.|||-.++.|-
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~c 721 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARC 721 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence 22221 1222222 223344567777888888889999998888553
No 238
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.39 E-value=6.7 Score=29.76 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=5.3
Q ss_pred hHHHHHHHH
Q 023255 99 ERDAEVREL 107 (285)
Q Consensus 99 e~e~~~r~L 107 (285)
++|.+|..|
T Consensus 9 EKDe~Ia~L 17 (74)
T PF12329_consen 9 EKDEQIAQL 17 (74)
T ss_pred hHHHHHHHH
Confidence 555556666
No 239
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.25 E-value=8.1 Score=34.35 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
++..+..+..++..+.....+|..++......-. +...=..+.++++.|+.++..+.+.++--++...+.+++++
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~----~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE----ESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3334444444444444444444444444322111 12222334455555555555555555544444454444433
No 240
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.24 E-value=20 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
+..+.......+.+|+.+..+-..+......++.++.-.+.+|..++..|.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555444444444444444444444444444443
No 241
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.23 E-value=20 Score=33.99 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=8.2
Q ss_pred CcccccCCccCCCCCCCC
Q 023255 16 SQFTMSGRRVLREPPLST 33 (285)
Q Consensus 16 rsvTleGD~ydpeG~LsG 33 (285)
..-++++|..+-....+|
T Consensus 40 ~~~~v~~~~v~v~~~v~G 57 (346)
T PRK10476 40 DDAYIDADVVHVASEVGG 57 (346)
T ss_pred CCeEEEeeeEEEcccCce
Confidence 334445555554444443
No 242
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.14 E-value=20 Score=36.85 Aligned_cols=93 Identities=17% Similarity=0.336 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
++.+-.+++.+++...-....++.|...+...+++ ...+..+++.+.+.+.++....+--++.|- +|
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e----------k~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~Q 488 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKE----------KESLEEELKEANQNISRLQDELETTRRNYE---EQ 488 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH
Confidence 34444444444444444444444444443333332 233444444444444444444333333332 58
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 201 REIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 201 ~q~meknli~ma~e~ekLrael~n~e 226 (285)
+.+|---|++|.-.+.+-+.||.+-+
T Consensus 489 Ls~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 489 LSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886654
No 243
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.14 E-value=18 Score=36.27 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.+..+..+.|.+ +..++.|..|+..+.-...+..+-++.++..++.+
T Consensus 45 ai~a~~~~~E~~---l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 45 AIKAKLQEKELE---LNRLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354444455555 33345555555555555555555555555555444
No 244
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=88.95 E-value=14 Score=33.42 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=48.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhh-hhhh-----hhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH---
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAI-ECEK-----KNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA--- 233 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~-e~ek-----k~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~--- 233 (285)
..++-.++.++-.++.-+...+..+ +.-+ ....+..+..+.....+..+...++.++..+.+...--.+..
T Consensus 150 ~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (292)
T PF01544_consen 150 LRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR 229 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777766 3332 233334444566666666666666666666554432211111
Q ss_pred ----------HhhhcCC----CCcccCCCC
Q 023255 234 ----------AAAAVNP----STSYAASYG 249 (285)
Q Consensus 234 ----------~a~~~~~----~~~y~~~~g 249 (285)
.+.+.=| .|-||+|++
T Consensus 230 ~n~~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 230 QNRVMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 1334444 579999997
No 245
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.74 E-value=31 Score=35.50 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~r 184 (285)
.++.+-||.+. +..+++++.-++.+...+....+....-=..++.++.+.+ -|-.+..+.+.....||+.+|
T Consensus 231 q~Ee~skLlsq---l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele---DkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 231 QQEENSKLLSQ---LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE---DKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555 4555555555666655555555555554455555544433 233344444444444555444
No 246
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.66 E-value=28 Score=37.40 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQE 85 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhE 85 (285)
++-+...+.++..++.+..+.-.+....++++.....+
T Consensus 503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e 540 (771)
T TIGR01069 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKE 540 (771)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333355555555444433333333333333333
No 247
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.65 E-value=34 Score=35.76 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS 91 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~ 91 (285)
++..+-.+.+.+..+...++.++..++.++..+..
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555554433
No 248
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=41 Score=36.54 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=22.9
Q ss_pred hhhhhchhhhHHHHHHHHhHHHHHHHHHH
Q 023255 189 CEKKNRASNHEQREIMEKNIISVAQQIER 217 (285)
Q Consensus 189 ~ekk~~~e~~eq~q~meknli~ma~e~ek 217 (285)
.+.++.++.++.+..-++|+..-+.-|++
T Consensus 827 ~~tsa~a~~le~m~~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 827 ERTSAAADSLESMGSTEKNLANELKLIEQ 855 (970)
T ss_pred HHHHhhhhhhHHhhccccchhhHHHHHHH
Confidence 45678889999988888888777776666
No 249
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=88.47 E-value=29 Score=34.83 Aligned_cols=154 Identities=20% Similarity=0.272 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH-HHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 023255 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRV-IESMHAELD----RVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 76 qqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleae-lr~-~e~lk~El~----qlr~eiq~l~~~rqeL~aev 149 (285)
..||...++||..+.+...++.++-..-|-.+.+|+.++-.= +.. ...-+.=+. +|-.+-+.|.+...+|+.-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888777777776666665221 100 112222222 34456677888888888888
Q ss_pred HHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh-----------hHHHHHHHHhHHHHHHHHH
Q 023255 150 NEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN-----------HEQREIMEKNIISVAQQIE 216 (285)
Q Consensus 150 q~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~-----------~eq~q~meknli~ma~e~e 216 (285)
..|.+|+..-..- -.||..+.++|+.++++|+++..-|.-||-.--.. -+.+.-+|.=++-+-.-++
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ 313 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLE 313 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998876655 78899999999999999999999999988432221 1222333333334444555
Q ss_pred HHHHHHHhHHhhH
Q 023255 217 RLQAELANAEKRA 229 (285)
Q Consensus 217 kLrael~n~e~r~ 229 (285)
|...=+++.++..
T Consensus 314 ka~eTf~lVeq~~ 326 (426)
T smart00806 314 KAEETFDLVEQCC 326 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 250
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=88.46 E-value=15 Score=35.26 Aligned_cols=97 Identities=21% Similarity=0.382 Sum_probs=58.6
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023255 57 DIQSLLQDNQRLAAT----HVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVR 132 (285)
Q Consensus 57 EIq~lL~dnqrla~~----h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr 132 (285)
.|++.+.|.||.... .+.|+.|++..--.|. +.+..++. -| +.+=.+|-+|++.++
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik---~~F~~l~~-------cL----------~dREvaLl~EmdkVK 213 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIK---QTFAELQS-------CL----------MDREVALLAEMDKVK 213 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHH-------HH----------HHHHHHHHHHHHHHH
Confidence 688888888875433 3444444444432222 22222211 13 334456778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET 175 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~ 175 (285)
+|.-++-..||.=..++.+++.-...+. ..||.+|+++|+-
T Consensus 214 ~EAmeiL~aRqkkAeeLkrltd~A~~Ms--E~Ql~ELRadIK~ 254 (302)
T PF07139_consen 214 AEAMEILDARQKKAEELKRLTDRASQMS--EEQLAELRADIKH 254 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHH
Confidence 9999999999888888888774433322 4556666666643
No 251
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.41 E-value=28 Score=38.86 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------hhhHhHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 023255 72 HVALKQELSLAEQELRHLSSVAA--------SVKAERDAEVRELYEKSLKLDAE----LRVIESMHAELDRVRADIEKLC 139 (285)
Q Consensus 72 h~~LqqEL~laqhEL~~l~~~i~--------~~~ae~e~~~r~L~~k~~kleae----lr~~e~lk~El~qlr~eiq~l~ 139 (285)
-..|+.++...+++|..|++.+. ..+..-|.-+-++..|+.-||.. +..++..-..+..|+.|++=|.
T Consensus 1065 s~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLR 1144 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLR 1144 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777765543 23333444445555555555532 1122222222222333333332
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHH
Q 023255 140 VIKQEMI--------KDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 140 ~~rqeL~--------aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli 209 (285)
.++-.+- ++|..|++.|+.++.. ..-+.++-++|..| +.| ...++--++.|...+-
T Consensus 1145 nEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaL-----------e~e---~PKnltdvK~missf~ 1210 (1439)
T PF12252_consen 1145 NEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISAL-----------EKE---KPKNLTDVKSMISSFN 1210 (1439)
T ss_pred hHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------Hhh---CCCchhhHHHHHHHHH
Confidence 2222221 3455555555555544 33344444444443 322 2334446777888887
Q ss_pred HHHHHHHHHHHHH
Q 023255 210 SVAQQIERLQAEL 222 (285)
Q Consensus 210 ~ma~e~ekLrael 222 (285)
....+||-||-|-
T Consensus 1211 d~laeiE~LrnEr 1223 (1439)
T PF12252_consen 1211 DRLAEIEFLRNER 1223 (1439)
T ss_pred hhhhHHHHHHHHH
Confidence 7777888877764
No 252
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=88.41 E-value=8.6 Score=30.97 Aligned_cols=35 Identities=37% Similarity=0.389 Sum_probs=18.3
Q ss_pred hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
++-++.-...-.++..+++++-.+..++.+|+..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555666666666666665554
No 253
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.37 E-value=20 Score=32.86 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHhHHHHHHHHHHHhhhhH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVA-ASVKAERDAEVRELYEKSLKLD 115 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i-~~~~ae~e~~~r~L~~k~~kle 115 (285)
.+...+..++.+++-++.....+..+. ..+....|.--|+.+++...+|
T Consensus 49 ~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 49 QAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344444445555555554444443322 2333444555555533333333
No 254
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.31 E-value=31 Score=37.47 Aligned_cols=42 Identities=17% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 53 ~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.+..++.+.+.+++++-..-.-+..+|+-....++.++....
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 334466666667776666666666666655555555555444
No 255
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.08 E-value=39 Score=35.86 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH---HHHHHHHHHHHhHH
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA---QQIERLQAELANAE 226 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma---~e~ekLrael~n~e 226 (285)
++..|++++..++.+.......++.-.+....+..++...+.+|+.-- .+--||+.+|.--+
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666666666666666666777777777777655 33445555554443
No 256
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=88.04 E-value=11 Score=29.21 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEIN--GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le--kDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
+.....++..+...+..|...+.++...+.... -.+..+..-..-+..|...|..++.++..++..++.-.+...+..
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666665544444333 111233333445566666666666666666666666666555555
Q ss_pred HHHHHHHH
Q 023255 199 EQREIMEK 206 (285)
Q Consensus 199 eq~q~mek 206 (285)
-..++||+
T Consensus 87 ~~~k~~e~ 94 (123)
T PF02050_consen 87 RERKKLEK 94 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 257
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.01 E-value=5.3 Score=31.71 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKL 138 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l 138 (285)
++.++++--.+..+|..+
T Consensus 45 ~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 45 LEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333333333333333333
No 258
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.98 E-value=19 Score=32.09 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHhHHHHHHHHHHHhhhhHHH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAAS-VKAERDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~-~~ae~e~~~r~L~~k~~kleae 117 (285)
.|+..|......+...-....+..+....|++++.-+..++.....+... +....|---|..+.+...++..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555566666666777777777777666555443 3445556666664444444333
No 259
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.90 E-value=36 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
..++.++.+|.+++..........+.|..+...+++.|.... .++..++.+++++...+..+ .+.
T Consensus 455 ~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~~~~~~l~~~----e~i- 519 (1041)
T KOG0243|consen 455 EELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQQAKATLKEE----EEI- 519 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH----HHH-
Confidence 335555555555555554444445566666666665555433 33444444444444442211 122
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023255 199 EQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (285)
Q Consensus 199 eq~q~meknli~ma~e~ekLrael~n~e~r~~a 231 (285)
.+.|+++-....+-..+||..+..+.+.-++
T Consensus 520 --i~~~~~se~~l~~~a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 520 --ISQQEKSEEKLVDRATKLRRSLEESQDDLSS 550 (1041)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444577888888777655443
No 260
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=87.82 E-value=25 Score=33.29 Aligned_cols=63 Identities=8% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
.|...+..++.....++.|..+|+.|+.. .-+..||..|+.||-.+-.+..-+++.+..-|..
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKYK----DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 44445566666667777777777777542 2347788888888888888888777777766543
No 261
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.78 E-value=30 Score=34.91 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=10.6
Q ss_pred hhhhhhhchhhhHHH
Q 023255 187 IECEKKNRASNHEQR 201 (285)
Q Consensus 187 ~e~ekk~~~e~~eq~ 201 (285)
|..||++-.|+.|.+
T Consensus 365 fq~ekeatqELieel 379 (502)
T KOG0982|consen 365 FQEEKEATQELIEEL 379 (502)
T ss_pred HHHhhHHHHHHHHHH
Confidence 777777777776654
No 262
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=87.55 E-value=25 Score=35.28 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 76 KQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDA-----E-LRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 76 qqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~klea-----e-lr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
..|+...++||..|.+....+..+-..-|-.+-+++.++=. . -...--+...-..+..+.+.|.....+|+.-|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777776666655555555444444311 1 01122333444556667777888888888888
Q ss_pred HHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023255 150 NEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (285)
Q Consensus 150 q~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~ 194 (285)
+.|.+|+..-..- ..++..+..+|+.+..+|..+...|.-||-.-
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~W 276 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIW 276 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 8888888776655 78899999999999999999999999888543
No 263
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=87.54 E-value=24 Score=33.55 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhHH
Q 023255 214 QIERLQAELANAE 226 (285)
Q Consensus 214 e~ekLrael~n~e 226 (285)
+++..+..|.++.
T Consensus 198 ~l~~a~~~l~~~~ 210 (346)
T PRK10476 198 ALAIAELHLEDTT 210 (346)
T ss_pred HHHHHHHHhhcCE
Confidence 4444444554444
No 264
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.50 E-value=50 Score=36.42 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
|.||-++.+.|+.=.+-.+|+.+.+..-+..-++|
T Consensus 377 N~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 377 NARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 44555555554444444444444444444444333
No 265
>PF14992 TMCO5: TMCO5 family
Probab=87.43 E-value=27 Score=33.23 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.|++-.....|=+.++.+...++.|..-+.
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555544443
No 266
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.42 E-value=31 Score=37.18 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
.+..++.+.....++.+++.+..+.-.+....++++.....++..+...+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444446666666655544444444444444444444443333
No 267
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=87.38 E-value=13 Score=29.56 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 023255 127 ELDRVRADIEK 137 (285)
Q Consensus 127 El~qlr~eiq~ 137 (285)
.+..+..++.+
T Consensus 71 ~~e~le~~i~~ 81 (105)
T cd00632 71 RLETIELRIKR 81 (105)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 268
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=87.20 E-value=13 Score=29.28 Aligned_cols=64 Identities=16% Similarity=0.358 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDL---NEINGDLAKARDE-SKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aev---q~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~ 181 (285)
+..++.++.+|..++..+..+......+.... ..+..+|.....+ ......++..|+.|.+...
T Consensus 7 ~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 7 FEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455555555555555555555555444333 3455555555555 5555566666666655544
No 269
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.18 E-value=54 Score=36.43 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023255 50 RIAIQHSDIQS 60 (285)
Q Consensus 50 ~L~~q~~EIq~ 60 (285)
.+.....+++.
T Consensus 531 ~l~~~~~~~~~ 541 (1047)
T PRK10246 531 RLDALEKEVKK 541 (1047)
T ss_pred HHHHHHHHHHH
Confidence 34444333433
No 270
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=45 Score=35.56 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
..|-.+........|.......+.+.|...+....+
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555444444433
No 271
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.14 E-value=5.7 Score=29.32 Aligned_cols=35 Identities=3% Similarity=0.154 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
+..-..+...+++......+|..+|..|.++|.++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444443
No 272
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.12 E-value=17 Score=37.00 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQ 84 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqh 84 (285)
+.-|--++...+.+++.++.+|++|.++...|++......+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45566667777778888888888777777766665544443
No 273
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.10 E-value=6 Score=34.09 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
..|+..+..+|.+|.....+|..++..++.+|..+.+.. -..+|...|..|++++..+..-++.-+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666777777777777777777777766655431 1345677777777777777777776554
No 274
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=87.03 E-value=12 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
..|++.+..|+.++.++..++..|
T Consensus 81 ~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 81 ESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 275
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.00 E-value=16 Score=30.14 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
...++..+.-+..+|+.+......|..++..+++.|.++-
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666666666665555543
No 276
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=86.91 E-value=25 Score=32.24 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHA 126 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~ 126 (285)
+|+--.....=...++...+|+.. .+++|.+|.|+++.+...-.+-+.. | -..-+.+..
T Consensus 7 ~~e~~~~~~~~~~~l~~~~~~~~~----~~~~~~~a~~~~s~~l~~~~~~~~~-------~----------~~~D~~v~~ 65 (215)
T cd07632 7 FEEDAGTLTDYTNQLLQAMQRVYG----AQNEMCLATQQLSKQLLAYEKQNFA-------L----------GKGDEEVIS 65 (215)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhcCC-------C----------CCCcHHHHH
Confidence 343333333334445566666654 4589999999998876554433222 1 112233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDL-NEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aev-q~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl 180 (285)
-|.+.-.-++++...+.+|..++ ..+.+-|..|..+ ..+++++|+..+....++
T Consensus 66 sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~ 121 (215)
T cd07632 66 TLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEH 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55566666667777777888887 4778888899887 888888888888877764
No 277
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.75 E-value=30 Score=33.11 Aligned_cols=86 Identities=28% Similarity=0.262 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
.++.....|+..|...+.+++++..---+...+---+..+| +..++..+.|-.+++.+.+.|.....+|.
T Consensus 48 ~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL----------aa~i~etkeeNlkLrTd~eaL~dq~adLh 117 (389)
T KOG4687|consen 48 GLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL----------AADIEETKEENLKLRTDREALLDQKADLH 117 (389)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH----------HHHHHHHHHHhHhhhHHHHHHHHHHHHHh
Confidence 34455555566666666666665443333333322222233 44477777777888888888888888888
Q ss_pred HHHHHHHHHHHHHhhh
Q 023255 147 KDLNEINGDLAKARDE 162 (285)
Q Consensus 147 aevq~LekDL~~~~~d 162 (285)
.+..-+.+-...|.+.
T Consensus 118 gD~elfReTeAq~ese 133 (389)
T KOG4687|consen 118 GDCELFRETEAQFESE 133 (389)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8877777777777655
No 278
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=17 Score=30.11 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023255 109 EKSLKLDAELRVIESMHAELDRVRADIE 136 (285)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~eiq 136 (285)
.-..|||..|..+.-+..|+..+..|-.
T Consensus 26 ~~rqkle~qL~Enk~V~~Eldlle~d~~ 53 (120)
T KOG3478|consen 26 ESRQKLETQLQENKIVLEELDLLEEDSN 53 (120)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcccch
Confidence 3345788888888888888888776643
No 279
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.66 E-value=0.2 Score=52.70 Aligned_cols=148 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqe 144 (285)
++..+..|+.+|...+.++..+.......+.+ .+.++.+|-.++.-|-++.+....++.|++.++....+
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r------- 309 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR------- 309 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------
Confidence 33445556666666666666665554444333 22333334334444444445555566666655554444
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH---hhhhhhhhhhhhchh-------hhHHHHHHHHhHHHHHHH
Q 023255 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH---KGRAAIECEKKNRAS-------NHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~---~~ra~~e~ekk~~~e-------~~eq~q~meknli~ma~e 214 (285)
+.+++.++.+++....-+..++..++.|+.... .-....|.+-+.... .-.|..-++..+..+.++
T Consensus 310 ----~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~ 385 (713)
T PF05622_consen 310 ----ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRR 385 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444445554444444221 112222222222111 123445556666666666
Q ss_pred HHHHHHHHHhHH
Q 023255 215 IERLQAELANAE 226 (285)
Q Consensus 215 ~ekLrael~n~e 226 (285)
+++|.-|+....
T Consensus 386 ~~~l~~e~~~L~ 397 (713)
T PF05622_consen 386 ADKLEFENKQLE 397 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 655555554433
No 280
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=86.54 E-value=37 Score=37.95 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=28.9
Q ss_pred hhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 184 ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
..+|+.++|.-..+++++-.++|.|..=- =.+|+|++|..
T Consensus 1270 ~~tf~~q~~eiq~n~~ll~~L~~tlD~S~-~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1270 VKTFEEQEKEIQQNLQLLDKLEKTLDDSD-TAQKQKEDIVK 1309 (1439)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHH
Confidence 46788888988899999999888886532 24555555543
No 281
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.49 E-value=15 Score=32.84 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=27.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHH
Q 023255 198 HEQREIMEKNIISVAQQIERLQAELANAEKRARA 231 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael~n~e~r~~a 231 (285)
.+..+++.+.+.+|..+++++-.++.|++-+=..
T Consensus 151 ~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 151 KEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999977443
No 282
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.49 E-value=34 Score=33.46 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 71 THVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 71 ~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
+..-|..+|...+.+|...+..+...+.
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444433
No 283
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.36 E-value=3.5 Score=36.95 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=55.7
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
.+.+.+|.++++.+++.+-.++.-||.+|.++-+--+.-...++.+-+.-.+++-||.|+++..
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999998876555555999999999999999999999876
No 284
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.29 E-value=32 Score=33.01 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023255 51 IAIQHSDIQSLLQDN-QRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELD 129 (285)
Q Consensus 51 L~~q~~EIq~lL~dn-qrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~ 129 (285)
+.....++++-+.=| ..+..+.-...++|+..+-|..+|...+..-+..+ - +||+| ++.++.-|.
T Consensus 36 ~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~k------e-----rLEtE---iES~rsRLa 101 (305)
T PF14915_consen 36 LKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNK------E-----RLETE---IESYRSRLA 101 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHH------H-----HHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
.+-.+...-.+.+.+|.--.++-..+--.++.. +.-+..|+...+-|.+.|.++++-|
T Consensus 102 aAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 102 AAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
No 285
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.22 E-value=41 Score=34.12 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q 023255 46 HLEDRIAIQHS 56 (285)
Q Consensus 46 ~Lee~L~~q~~ 56 (285)
++..+|..|..
T Consensus 325 ll~sqleSqr~ 335 (493)
T KOG0804|consen 325 LLTSQLESQRK 335 (493)
T ss_pred hhhhhhhHHHH
Confidence 45666666655
No 286
>COG5293 Predicted ATPase [General function prediction only]
Probab=86.16 E-value=42 Score=34.28 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 023255 86 LRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLC------VIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 86 L~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~------~~rqeL~aevq~LekDL~~~ 159 (285)
++.....+...+.+- +=+++.++++||+.++.-+.++-.-+++.-..- ...+-|..++-.+.-+|++.
T Consensus 325 v~~F~r~~~e~R~~y------l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~ 398 (591)
T COG5293 325 VIAFNRAITEERHDY------LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAEL 398 (591)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHH
Confidence 333444444444444 556666666666665555555544444332211 12233444444444444443
Q ss_pred h---hhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 160 R---DESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 160 ~---~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
+ .+..|+.++...|..+++|+-+....+=-|
T Consensus 399 ~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e 432 (591)
T COG5293 399 EYRIEPLRKLHALDQYIGTLKHECLDLEERIYTE 432 (591)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3 225556666666666666666555554433
No 287
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.08 E-value=52 Score=35.16 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=71.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023255 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (285)
Q Consensus 60 ~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq 136 (285)
.++.+--+.-..|..|++++......++-+.......... -|.|.|.+.....++.+++... ..-+......+.
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~---~~~le~~kk~~~ 562 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTL---TQSLEMLKKKAQ 562 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH---HHHHHHHHHHHH
Confidence 3455555666667777777776666666665555443332 4556666666666666664322 122222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHH
Q 023255 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~e 216 (285)
++......|..++...+++|.+++- ++.++..+|+.+++...|+...++-.++. ++.++.++. .+.=.+
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~---~~~e~~~ele~~~~k~~rleEE~e~L~~k----le~~k~~~~----~~s~d~ 631 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQE---QYAELELELEIEKFKRKRLEEELERLKRK----LERLKKEES----GASADE 631 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccc----cccccH
Confidence 3333333333333333333333331 23334444444444444444444333321 222222221 222345
Q ss_pred HHHHHHHhHH
Q 023255 217 RLQAELANAE 226 (285)
Q Consensus 217 kLrael~n~e 226 (285)
.|..||.+..
T Consensus 632 ~L~EElk~yK 641 (698)
T KOG0978|consen 632 VLAEELKEYK 641 (698)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 288
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=86.06 E-value=42 Score=34.12 Aligned_cols=134 Identities=14% Similarity=0.100 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR-----------VIESMHAELDRVRA 133 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr-----------~~e~lk~El~qlr~ 133 (285)
+.........|+++|.++...+++=......... ....|..+.|.+.| ..-..|+|+...+.
T Consensus 201 ~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~-------~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~ 273 (554)
T KOG4677|consen 201 SLERFSALRSLQDKLQLAEEAVSMHDENVITAVL-------IFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKL 273 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345567777777777766654333221111 12334444454443 22333445555444
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHH
Q 023255 134 DIEK--LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 134 eiq~--l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli 209 (285)
.++. +....++|..-.++-. ..-.+.-|..++++|++.+|.|+.-.+..++.-..-.--+--+++.||-+..
T Consensus 274 ~~~l~~~l~~keeL~~s~~~e~----~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 274 LLDLFRFLDRKEELALSHYREH----LIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHhhhHHHHHHHHHHHh----hccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4444444433222111 1111234466778888888877776666665544444444444444544433
No 289
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=85.94 E-value=39 Score=33.61 Aligned_cols=139 Identities=11% Similarity=0.217 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhh------
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKL------ 114 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kl------ 114 (285)
.+.+-.++..-++.+|.+-...++++..+.+..|||+.++--++.+...+.-++-- +|..+.+-+|+-.+.
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Confidence 55667777777778888888899999999999999998888777776666544322 222222222222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 115 -DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 115 -eaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
|.++.++.. .-..+++.|++....+-.|..+.+.+=+ +.+.+++ ..++-+|...+.+++-++..+|.+
T Consensus 214 ~e~~~~~~a~---N~~~~ks~i~ei~~sl~~l~d~lk~~~q-~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~ 284 (464)
T KOG4637|consen 214 SEKEIGRIAN---NYDKLKSRIREIHDSLTRLEDDLKALIQ-ALRSNSENRLCELMELDKAMNSLKPDLIQLRKI 284 (464)
T ss_pred hHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHH
Confidence 222222211 1122333333333333333333333211 1112222 224555778888888887777765
No 290
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=85.88 E-value=1.2 Score=39.96 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=26.9
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
+.|+.|| -+|||.+|-| +|-|||.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~yF~~RPSa~--~~~y~~~~--SggSNl~psnp~ 93 (189)
T PRK14001 50 VIGSAHIGQQFTAAKYFHPRPSSA--GDGYDAAA--SSGSNLGPTNEK 93 (189)
T ss_pred EEeeeeecCCCCCCCCccCCCcCC--CCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899998876 56788665 788854445553
No 291
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=22 Score=30.58 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.+++-+++.+..+...++++....++|...+..+.+.++...
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777766644
No 292
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.68 E-value=72 Score=36.40 Aligned_cols=50 Identities=16% Similarity=0.427 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
+++--++....+..++..++.++..+....+++.+.++.+..++.++.++
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~ 921 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSE 921 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHH
Confidence 33444677778888888888888888888888888888888888887766
No 293
>PRK12704 phosphodiesterase; Provisional
Probab=85.49 E-value=47 Score=34.13 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHH
Q 023255 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~m 204 (285)
|..+-+.|++....+.....+|...+++|+..++++.+.+..++.-+......+++.-.|
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444444444444444555555555566666666665555555554444444444443
No 294
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=85.45 E-value=17 Score=29.16 Aligned_cols=35 Identities=9% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..++..+..+...++.+......|..++..+++.|
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 295
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=85.37 E-value=5.3 Score=39.76 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
+..+-++.++..++..+++.|.+.+.+++.+|..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666666666655
No 296
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=85.31 E-value=50 Score=36.11 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 71 THVALKQELSLAEQELRHLS 90 (285)
Q Consensus 71 ~h~~LqqEL~laqhEL~~l~ 90 (285)
-|+.+..+|+....++.-+.
T Consensus 962 LhaE~daeLe~~~ael~ele 981 (1424)
T KOG4572|consen 962 LHAEIDAELEKEFAELIELE 981 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 297
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.27 E-value=38 Score=32.84 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
...+.+...+..|+..|.....|+..+++.|..-+++.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 33444444444444444444445555555555444443
No 298
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.13 E-value=20 Score=29.45 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
+..+|........+|...+.+|.+-++.|..
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444445555555555555543
No 299
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=85.06 E-value=8.5 Score=38.23 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
+..+-.+.++..++..+++.|.+.+..++.+|..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666677666666655
No 300
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=85.02 E-value=21 Score=32.23 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR 201 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq-~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~ 201 (285)
++.=...+..+...+......+...+. .+...|..|..+ .++.+.+..+++.+.+........++--|+.+-..-..+
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHhHHHHH-HHHHHHHHHHHhHH
Q 023255 202 EIMEKNIISVA-QQIERLQAELANAE 226 (285)
Q Consensus 202 q~meknli~ma-~e~ekLrael~n~e 226 (285)
.......-.+. +|++|+.+.+..++
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~ 163 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQ 163 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHH
No 301
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.97 E-value=28 Score=31.03 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
..|.|-|.-.+..|..+...+....+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~ 52 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMAN 52 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444444433
No 302
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.77 E-value=16 Score=36.91 Aligned_cols=107 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH--HHHHHHHHhhhhh
Q 023255 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI--ETERQEIHKGRAA 186 (285)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEI--e~LrqEl~~~ra~ 186 (285)
++..||-.||....-++++++.++..+.+...+..-...+...|++-|.+ ...|.+|+..+ +..++||..+|.+
T Consensus 242 ehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e----a~rl~elreg~e~e~~rkelE~lR~~ 317 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE----APRLSELREGVENETSRKELEQLRVA 317 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh----hhhhhhhhcchhHHHHHHHHHHHHHH
Q ss_pred hhhhhhhchhh------------------------hHHHHHHHHhHHHHHHHHHHHH
Q 023255 187 IECEKKNRASN------------------------HEQREIMEKNIISVAQQIERLQ 219 (285)
Q Consensus 187 ~e~ekk~~~e~------------------------~eq~q~meknli~ma~e~ekLr 219 (285)
++.=-|....+ --++|--||-|-..--.+|||+
T Consensus 318 L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 318 LEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
No 303
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.76 E-value=32 Score=34.19 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+-+..+.+.|.+.++..++...++|....++..|..+++-.|..|+-
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666677777777777777777777666654
No 304
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.62 E-value=39 Score=32.52 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=51.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hh------------hHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAA-----SV------------KAERDAEVRELYEKSLKLDAELRVIESMH 125 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~-----~~------------~ae~e~~~r~L~~k~~kleaelr~~e~lk 125 (285)
.......+....|+.+|.....-|+.....-. +. .+..-.++-.|=.|...||-| +..++
T Consensus 104 ~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeE---N~~LR 180 (306)
T PF04849_consen 104 EQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEE---NEQLR 180 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHH---HHHHH
Confidence 33444445555566666665555555532221 00 111223333477777778888 88888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh
Q 023255 126 AELDRVRADIEKLCVIKQEMI-----------KDLNEINGDLAKAR 160 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~-----------aevq~LekDL~~~~ 160 (285)
.|..++..+.......-+.|. .+|..|+.+|.+-.
T Consensus 181 ~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 181 SEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 888877765554444443333 34555555555533
No 305
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=84.55 E-value=18 Score=28.58 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek 206 (285)
...|..|+..|+..+.+.+..|+--+..-.+.+.++..+||
T Consensus 54 ~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 54 KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555555555555555555555555555554
No 306
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=48 Score=33.38 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhchhhhHHHH-------HHHHhHHHHHHHHHHHH
Q 023255 174 ETERQEIHKGRAAIECEKKNRASNHEQRE-------IMEKNIISVAQQIERLQ 219 (285)
Q Consensus 174 e~LrqEl~~~ra~~e~ekk~~~e~~eq~q-------~meknli~ma~e~ekLr 219 (285)
+.|+.+|+.++-+++.|.-...++-.|.+ .-+-.+.|+-.|.|.|+
T Consensus 437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 67788888888888888877777655554 45556666666888886
No 307
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.40 E-value=21 Score=36.17 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~ 161 (285)
...+-+..++..++..+.++.....++..+++.++++|..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3355566666666666666666666666666666666666554
No 308
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.28 E-value=30 Score=31.36 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
...+.+++..++.+|+.+...|+.-+.++..--+.|.+-..+ .+|.-++...+..|++|+..++....
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777776666665555555555555 66766777777777777766665443
No 309
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.23 E-value=17 Score=28.07 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.+.+|+|...+-.++......+.++..++.+--+||+.++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir 45 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIR 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888887777776666654
No 310
>PF14182 YgaB: YgaB-like protein
Probab=84.19 E-value=6.1 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 149 LNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 149 vq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+.|+++|.+.. +..++..++.||..++++|......|+-
T Consensus 26 CqeIE~eL~~l~-~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 26 CQEIEKELKELE-REAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 2456666777777777777777766653
No 311
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=84.11 E-value=15 Score=30.19 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
+..+...|.+++.-.+.++.+.+.+...+++.- -++.+++-..+..++..+..++... +
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~m-----------------hrRlDElV~Rv~~lEs~~~~lk~dV----s 64 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASM-----------------HRRLDELVERVTTLESSVSTLKADV----S 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----------------HHhHHHHHHHHHHHHHHHHHHHhhH----H
Confidence 445566677777777777777777777777666 3444444444444444333333332 3
Q ss_pred HHHHHHHHHHHHh
Q 023255 148 DLNEINGDLAKAR 160 (285)
Q Consensus 148 evq~LekDL~~~~ 160 (285)
+++..+.|+.+|+
T Consensus 65 emKpVT~dV~rwk 77 (112)
T PF07439_consen 65 EMKPVTDDVKRWK 77 (112)
T ss_pred hccchHHHHHHHH
Confidence 3455555655554
No 312
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.09 E-value=76 Score=35.39 Aligned_cols=49 Identities=6% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHH
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ 215 (285)
..|+..++..+..+..+=.-+++.++.+.++..=.+-..++|-.+-.-+
T Consensus 535 ~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~ 583 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTL 583 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHH
Confidence 3344444555555555555555555555555555554445544444433
No 313
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=84.04 E-value=9.1 Score=27.85 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023255 138 LCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 138 l~~~rqeL~aevq~LekD 155 (285)
|....+.|..+|.+|..|
T Consensus 8 Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444433
No 314
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.44 E-value=30 Score=30.15 Aligned_cols=9 Identities=0% Similarity=0.250 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 023255 145 MIKDLNEIN 153 (285)
Q Consensus 145 L~aevq~Le 153 (285)
|..+...|+
T Consensus 101 Le~e~r~L~ 109 (158)
T PF09744_consen 101 LEEENRQLE 109 (158)
T ss_pred HHHHHHHHH
Confidence 333333333
No 315
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=83.36 E-value=42 Score=31.85 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 137 KLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
+|.+...+|-.-++.|..|+...++. -++|++-+.+|+.|++.+.....++..+|..
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~ 314 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDE 314 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33444444444444444454444444 3567777777777777777777777666543
No 316
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=83.27 E-value=8.4 Score=40.15 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ 183 (285)
.|-.+.+..||.+++..-|+|+++..++..+++.+.+.+-+.+. .|.+|+.+|+..+..+..+
T Consensus 85 ~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~---eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 85 KRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL---ELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhHHHHHHHHHHHH
Confidence 56667888899999999999999999999999999988776443 2445555555555444433
No 317
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.27 E-value=44 Score=32.00 Aligned_cols=86 Identities=21% Similarity=0.294 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHH
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli 209 (285)
.+..+.....+|..++..-..--.+|+.- +.--...+.|++.|...+.++......-|. .-...-++||
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~-------k~e~~n~~l~ 275 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS-------KWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHH
Confidence 66666666777777777777666666643 333455566666666666655544433332 2233344777
Q ss_pred HHHHHHHHHHHHHHhHH
Q 023255 210 SVAQQIERLQAELANAE 226 (285)
Q Consensus 210 ~ma~e~ekLrael~n~e 226 (285)
.|+-|-..+..++....
T Consensus 276 ~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 276 EMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776555555554443
No 318
>PRK11281 hypothetical protein; Provisional
Probab=83.26 E-value=86 Score=35.37 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQ-------ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~Lqq-------EL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleae 117 (285)
..||.++.....+++..-.+....-.....++. .+..++..++-+..++.+.....+. +++ .+..+++||
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~-l~~--~~~~~l~ae 200 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA-LRP--SQRVLLQAE 200 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CCH--HHHHHHHHH
Confidence 457777666655444433333333333333333 3344444444444444332222211 111 122334444
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHH-HH-H--hhhhhh
Q 023255 118 LRV----IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQ-EI-H--KGRAAI 187 (285)
Q Consensus 118 lr~----~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~Lrq-El-~--~~ra~~ 187 (285)
+.. ++..++++.....-..=+...+..+..+++.+++.++.++.- .+++.+.++.++.... +. . ....-+
T Consensus 201 ~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i 280 (1113)
T PRK11281 201 QALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLV 280 (1113)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHH
Confidence 322 233333333333223333334455556666666666666654 3334444444433211 10 0 001113
Q ss_pred hhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 188 ECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
-.|-..|.++.+.+..-.+++-++.++-.+.+..+.+.
T Consensus 281 ~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~ 318 (1113)
T PRK11281 281 AQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRL 318 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444444444333
No 319
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=83.21 E-value=23 Score=28.80 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek 206 (285)
.-+..|...|...++.+..++..++.-+..-.+-.-..++|||
T Consensus 68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777777777777766666666666654
No 320
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.96 E-value=6.9 Score=35.84 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
+|...+..|.+.|..+.++++..|+-.-
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 3445566667777777777777666443
No 321
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.84 E-value=89 Score=35.24 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHH---HHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH
Q 023255 138 LCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQE---IHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (285)
Q Consensus 138 l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqE---l~~~ra~~e~ekk~~~e~~eq~q~meknli~ma 212 (285)
+...++.+..+++.+++.++.++.. .++..+.+.-++..... ....-..+..|-..|.++.+.+..-.+++-.+.
T Consensus 206 ~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 206 ARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666665555544 33444444444433332 112222344444455555555555555555555
Q ss_pred HHHHHHHHHH
Q 023255 213 QQIERLQAEL 222 (285)
Q Consensus 213 ~e~ekLrael 222 (285)
++-...+..+
T Consensus 286 ~~~~~~~~~l 295 (1109)
T PRK10929 286 SQQRQAASQT 295 (1109)
T ss_pred HHHHHHHHHH
Confidence 5444433333
No 322
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.76 E-value=20 Score=27.71 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 53 IQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 53 ~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
....|+..+..+..........+...+...-.|++.+...+-.+
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eL 51 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYEL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333344444444444444444444444433
No 323
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=82.61 E-value=4 Score=41.35 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhh-hccHHHHHHHHHHHHHHH
Q 023255 141 IKQEMIKDLNEINGDLA---KARDE-SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 141 ~rqeL~aevq~LekDL~---~~~~d-~qkl~aLkaEIe~LrqEl 180 (285)
...+|+.++..++++++ ....+ .+||++|+.|++.|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 22223 445555556666665555
No 324
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.55 E-value=40 Score=31.05 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhh-hhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAA-IECEK 191 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~-~e~ek 191 (285)
++++++|+..|..|-.......+....+|..|+.-+....++ ...+..+..|+..|+.++.++|.. +..++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 444444444444444444333333344444444444333333 223455566777777777777777 54444
No 325
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.51 E-value=92 Score=35.15 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 023255 75 LKQELSLAEQELRHLSSVAAS 95 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i~~ 95 (285)
++.+++..+++++.|+..+..
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555444443
No 326
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=82.25 E-value=22 Score=37.54 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023255 115 DAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (285)
Q Consensus 115 eaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~ 194 (285)
|.++++...+.++|.+++++|..+....+.+..++..-+..+.+...+-+...-=..=++...+...+....|-.=.+.=
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHH
Q 023255 195 ASNHEQREIMEK 206 (285)
Q Consensus 195 ~e~~eq~q~mek 206 (285)
...++|.|.|+.
T Consensus 155 ~~~~~~~q~~~R 166 (632)
T PF14817_consen 155 QGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHh
No 327
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.24 E-value=28 Score=33.23 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
|++.++||+.|||=+...|+-+ .+.=+...|=+|.+.-+=-||..=|.++|
T Consensus 119 LKEARkEIkQLkQvieTmrssL----------~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSL----------AEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----------chhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 4555555555555555554433 33455666777777777777777776666
No 328
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=82.18 E-value=61 Score=32.85 Aligned_cols=107 Identities=16% Similarity=0.266 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hh-hccH-HHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR--------DE-SKDM-AAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~--------~d-~qkl-~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
+...+.+.+..++.+.....+++.+.+.+-.+|.+-. .+ .++| .-++..++++++.+. .-+..+=+.
T Consensus 82 l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~---~~~~~s~~~ 158 (448)
T COG1322 82 LQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLE---QRIHESAEE 158 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3344444444455555555555555555555544322 11 2222 222233344444333 335556677
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh-HHHHH
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEKR-ARAAA 233 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r-~~a~~ 233 (285)
+..++++...|-.++-+|++|+-.|-+=|.+...| .||-.
T Consensus 159 ~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv 199 (448)
T COG1322 159 RSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEV 199 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHH
Confidence 88999999999999999999999999999997777 45544
No 329
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.12 E-value=42 Score=31.00 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHH
Q 023255 213 QQIERLQAELANAE 226 (285)
Q Consensus 213 ~e~ekLrael~n~e 226 (285)
.|++.|+.++..|.
T Consensus 103 ~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 103 EEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666655553
No 330
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.09 E-value=49 Score=31.75 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
+..|.+.|...+...++-+..|-.|-..-..|.-++...+..|--++..+...+-+. -+|+.-+|..-+..+.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~-------~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY-------REKIRELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 667888888888888888888988888888999999999999988888887555444 2333333444455555
Q ss_pred HHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIE 136 (285)
Q Consensus 124 lk~El~qlr~eiq 136 (285)
++.++..|+.++.
T Consensus 152 L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 152 LREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 331
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.07 E-value=37 Score=30.33 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.+...|.+|....-+|..+.+.+...+... .+.+..|+.+++.+.+++..++-.|.
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~---~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAK---DKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333322 45666777777777777777766554
No 332
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.03 E-value=23 Score=32.44 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
...+++++++|+.|+++.....|-..+-...+.-|.+..-+=+.....|-.+||.++
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444555555555555555555666666655
No 333
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.37 E-value=32 Score=32.51 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.|.++..+.|+..+..++.+.....+++..+|..+..-|.++.
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666655555555555555554444444433
No 334
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=81.33 E-value=50 Score=31.31 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023255 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (285)
Q Consensus 100 ~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqE 179 (285)
+--++|..+.-+...|.. +.+.+.--..|..+|.+|..... -+.++..|+++|.+...+.. ..+++|..++.+
T Consensus 122 ~~d~yR~~LK~IR~~E~s---l~p~R~~r~~l~d~I~kLk~k~P-~s~kl~~LeqELvraEae~l---vaEAqL~n~kR~ 194 (271)
T PF13805_consen 122 RLDQYRIHLKSIRNREES---LQPSRDRRRKLQDEIAKLKYKDP-QSPKLVVLEQELVRAEAENL---VAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhHHHHHhHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhh---HHHHHHHHhhHH
Confidence 455667776667777776 44445555556677777665433 25567777777777665532 334566666554
Q ss_pred HHhhhhhhhhhhhhchhhhHH
Q 023255 180 IHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 180 l~~~ra~~e~ekk~~~e~~eq 200 (285)
+++.+|.+.=.+-.|.-|.
T Consensus 195 --~lKEa~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 195 --KLKEAYSLKFDALIERAEK 213 (271)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 5556666655555444443
No 335
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=81.29 E-value=2.3 Score=38.30 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=25.3
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
|-|+.|| -+|||.+|-| + |||.+ ||||.-.++.|.
T Consensus 54 vvGS~LIgQ~Ft~~~YF~~RPSa~---~-y~~~~--SggSNl~psnp~ 95 (193)
T PRK13997 54 VIGSKLIGQNFTDPRYFHGRVSSI---E-YKAEA--SGSNNYAPSNPD 95 (193)
T ss_pred EEeeeeecCCCCCCCCccCCCCCC---C-CCccc--ccccCCCCCCHH
Confidence 5688888 8899997776 2 88765 788854445554
No 336
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.25 E-value=14 Score=28.01 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=32.7
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
+.+|..|+.|-+.|...-.+.+..|.--+.... ..|+.+..+...++++..++.+.+.|.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~-------e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIK-------ELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666654443333 334444445555555555555555443
No 337
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=81.10 E-value=45 Score=30.64 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh---------
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK--------- 192 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk--------- 192 (285)
..+.+++..+..++.+....-..+-.++....+-..+...+.. .-++++++.+..++.......-=|+
T Consensus 115 ~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~---~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~a 191 (237)
T cd07657 115 QQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGG---RGGRKLDKARDKYQKACRKLHLCHNDYVLALLEA 191 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555444433321 1244444444444443333333222
Q ss_pred ----------hchhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 023255 193 ----------NRASNHEQREIMEKNIISVAQQIERLQAE 221 (285)
Q Consensus 193 ----------~~~e~~eq~q~meknli~ma~e~ekLrae 221 (285)
.=+++++.+|.|+.++|.+-+++=.-=++
T Consensus 192 N~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 192 QEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578899999999999998877443333
No 338
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=80.86 E-value=25 Score=32.84 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.1
Q ss_pred CCcccCCCC-CCC
Q 023255 241 STSYAASYG-NPD 252 (285)
Q Consensus 241 ~~~y~~~~g-n~~ 252 (285)
+|-||||+. -|+
T Consensus 275 aGiyGMNf~~mP~ 287 (318)
T TIGR00383 275 AGIYGMNFKFMPE 287 (318)
T ss_pred HHHHhCCcccCcc
Confidence 578999996 454
No 339
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=80.78 E-value=53 Score=31.22 Aligned_cols=91 Identities=10% Similarity=0.164 Sum_probs=44.5
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc-----hhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH----
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNR-----ASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA---- 233 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~-----~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~---- 233 (285)
..++-.|+..+=.+|.-+...+.++-.-.+.. .+.-++.+-.--.+.++...++-++..+.+.-.=.-+-.
T Consensus 179 l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~ 258 (322)
T COG0598 179 LERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQ 258 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555455555555444444444332 344444444455555555556666555544321111111
Q ss_pred ---------HhhhcCC----CCcccCCCCC-CCC
Q 023255 234 ---------AAAAVNP----STSYAASYGN-PDP 253 (285)
Q Consensus 234 ---------~a~~~~~----~~~y~~~~gn-~~~ 253 (285)
.+.+.-| .|-||||+++ |+.
T Consensus 259 N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel 292 (322)
T COG0598 259 NEIMKILTIVSTIFLPPTLITGFYGMNFKGMPEL 292 (322)
T ss_pred HHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCC
Confidence 1333333 5799999985 654
No 340
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=80.73 E-value=28 Score=28.04 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
..+-.+..+|..++.+.-.+...-+++..++..+.++...... -+.+..+|+.++++++..|.-..--|
T Consensus 10 ~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 10 QESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666667777777777777777766555333 45677777777777776666554444
No 341
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=80.62 E-value=5 Score=32.68 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=25.1
Q ss_pred hhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 184 ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
..|+++-++.-..+-+++..+++++.....++..+.+.+
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556556666666777777777777776666655
No 342
>PRK11519 tyrosine kinase; Provisional
Probab=80.39 E-value=84 Score=33.34 Aligned_cols=113 Identities=16% Similarity=0.249 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI--- 141 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~--- 141 (285)
..-+..+...++++|..++..|+........+..+. +.+.+++....++++ +.+++....++...
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~--ea~~~l~~~~~l~~q----------l~~l~~~~~~l~~~y~~ 336 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPL--EAKAVLDSMVNIDAQ----------LNELTFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcc
Confidence 345777888899999999999999887766543332 233454444444443 33333322222211
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 142 ----KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 142 ----rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+.|..+.+.|.+++.+++.....++..+.++..|..+..-.+.-++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555666666666655666666666666666555555554433
No 343
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=80.11 E-value=2.4 Score=38.13 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=26.7
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
|.|+.|| -+|||.+|-+ +.+-||+.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~yF~~RPSa~-~~~~y~~~~--SggSNl~psnp~ 94 (193)
T PRK00315 50 VVGSALIGQNFTGPGYFHGRPSAT-APMPYNPQA--SGGSNLAPSNPA 94 (193)
T ss_pred EeeehhcCCCCCCCCCcCCCCCcC-CCCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899997775 444688765 788854445553
No 344
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=80.08 E-value=11 Score=33.24 Aligned_cols=43 Identities=5% Similarity=0.226 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 143 qeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
.+|..+|..|+++++....--.+.+.|+.+..-|..||.....
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444444555555555555555544433
No 345
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=79.87 E-value=72 Score=32.22 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=40.2
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 162 ESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 162 d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
+.-+++.|+.+|..|+++|...|+.+--.. +. . .+.....|-|.|.-|..-|++.=
T Consensus 312 ~sPqV~~l~~rI~aLe~QIa~er~kl~~~~-g~-~----------~la~~laeYe~L~le~efAe~~y 367 (434)
T PRK15178 312 QNPLIPRLSAKIKVLEKQIGEQRNRLSNKL-GS-Q----------GSSESLSLFEDLRLQSEIAKARW 367 (434)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----------chhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998887763221 10 0 33456677788888777777653
No 346
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.78 E-value=64 Score=31.60 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHhHHh
Q 023255 206 KNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 206 knli~ma~e~ekLrael~n~e~ 227 (285)
..+-....++..++++++.++.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555577777777776663
No 347
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.72 E-value=41 Score=34.11 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
+..+.+-++.+.+++..++ .+....+.-+-.+.+++.+|+.+|....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLL--------------TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555554444 3334444445556667777777765553
No 348
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.57 E-value=86 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIH 181 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~ 181 (285)
+...+.+++.+-.++.
T Consensus 579 l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 579 IKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 349
>PLN02678 seryl-tRNA synthetase
Probab=79.54 E-value=9.4 Score=38.49 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
.+-.+..+..++..+++.|.+.+..++.+|..
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555556666666666666654
No 350
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=79.48 E-value=3 Score=37.82 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=25.3
Q ss_pred ccCceEE-------EeecCCCcccc-c--------CCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTM-S--------GRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTl-e--------GD~ydpeG~LsGGs~p~~~~~l 43 (285)
|.|+.|| =+|||.+|-|- + .+-||+.+ ||||.-.+++|.
T Consensus 49 vvGS~LIgQ~Ft~~~YF~~RPSa~~y~~~~~~~~~~~~y~~~~--SggSNlgpsnp~ 103 (203)
T PRK13995 49 EVGSELIGQSFTDARFFKGRVSAVNYNTYTKEDKGNGNYGGVS--SGSQNYAPTNPE 103 (203)
T ss_pred EEeeeeecCCCCCCCCccCCCcccccccccccccccCCCCccc--ccccCCCCCCHH
Confidence 5688888 88999977762 1 22466554 788854445553
No 351
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=79.46 E-value=24 Score=30.94 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023255 166 MAAIKAEIETERQEIHK 182 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~ 182 (285)
...+..||+.+++||.+
T Consensus 156 ~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 33444555555555554
No 352
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.09 E-value=32 Score=27.66 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=12.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRV 131 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~ql 131 (285)
+......+|.+++.++....+|..+
T Consensus 22 l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 22 VATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444555555555555555544
No 353
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=79.00 E-value=73 Score=31.80 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h
Q 023255 85 ELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-S 163 (285)
Q Consensus 85 EL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~ 163 (285)
|+..+.+.....+.-..-.+-++ ...++..|.++..|-.+|....-+++..++.-...=.+...+ .
T Consensus 264 el~siRr~Cd~lP~~m~tKveel-------------ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEEL-------------ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHH-------------HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH----------
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA---------- 233 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~---------- 233 (285)
++...|++|-..-.+-...-.++..-||+.-...+|..+ ||+|.|+.++ +-+-.|..
T Consensus 331 areaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekk----------releql~~q~---~v~~saLdtCikaKsq~~ 397 (442)
T PF06637_consen 331 AREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKK----------RELEQLKMQL---AVKTSALDTCIKAKSQPM 397 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH---HhhhhHHHHHHHhccCCC
Q ss_pred ------HhhhcCCCC---------------cccCCCCCCCCCCCC
Q 023255 234 ------AAAAVNPST---------------SYAASYGNPDPGFGG 257 (285)
Q Consensus 234 ------~a~~~~~~~---------------~y~~~~gn~~~~~~~ 257 (285)
..++.||.+ +|-++.|||-++-+|
T Consensus 398 ~p~~r~~~p~pnp~pidp~~leefkrrilesqr~~~~~~~~~~sg 442 (442)
T PF06637_consen 398 TPGPRPVGPVPNPPPIDPASLEEFKRRILESQRPPVGNPAAPSSG 442 (442)
T ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhccCCCCCCCCCCCCC
No 354
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.99 E-value=88 Score=32.76 Aligned_cols=20 Identities=5% Similarity=0.018 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhHHHHHHHHH
Q 023255 197 NHEQREIMEKNIISVAQQIE 216 (285)
Q Consensus 197 ~~eq~q~meknli~ma~e~e 216 (285)
+.-+.|..=+.|--|.++.-
T Consensus 710 Q~~~iqsiL~~L~~~i~~~~ 729 (741)
T KOG4460|consen 710 QRKCIQSILKELGEHIREMV 729 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433
No 355
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=78.88 E-value=12 Score=27.23 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLra 220 (285)
+++.++++.+.++|.+.|.-|.---.-+.-.-+=.-.||..|..++..++.+|.
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999988888888888999999999999999998874
No 356
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.76 E-value=39 Score=28.75 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 61 LLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 61 lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
+-.+...........+.++......|..+......+...
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~ 62 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEA 62 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433333
No 357
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.58 E-value=43 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHhHHhh
Q 023255 206 KNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 206 knli~ma~e~ekLrael~n~e~r 228 (285)
.+++.-..+++.||.+|.+-+.+
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667778888887766644
No 358
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.47 E-value=52 Score=29.81 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
+-.-+.+++.+++.....+..+..+.+++++=-.+..+|.+.|.+.+.++...+.+..+....++.|
T Consensus 95 Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee 161 (211)
T cd07598 95 YGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQ 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677776666677777776666665533333455566677777777777777766666655
No 359
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.42 E-value=77 Score=32.80 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
-+++.--.++.+|..++...-.|+.+....-+.||+.+++-
T Consensus 264 q~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 264 QAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34444455677777777777788888888888888887754
No 360
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.39 E-value=34 Score=27.60 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
+.|+..++..+.........+...+..=+.+|..-... ...+.....=|..-.....++..-++.|++.+.+.......
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 023255 204 MEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 204 meknli~ma~e~ekLrael~n 224 (285)
+...+..|-.++.+|...|..
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 361
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.37 E-value=24 Score=36.64 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
....+.....+|. .+.++.-.++++..+..
T Consensus 176 ~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 176 MQQKWKKRKKDLP-NKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHh
Confidence 3334444444444 24444444444444433
No 362
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=78.32 E-value=58 Score=30.26 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSS-VAASVKAERDAEVRELYEKSLKLDAELRVIESMHA 126 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~-~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~ 126 (285)
-.+-...+.+.|.-....+|....|.+-++-+.++++.|..-.. .+...- +|+ | ... +..+.+...
T Consensus 69 ~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~w--qEm----L-n~A------~~kVneAE~ 135 (239)
T PF05276_consen 69 RRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAW--QEM----L-NHA------TQKVNEAEQ 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHH--HHH----H-HHH------HHHHHHHHH
Confidence 33334444477777777777777777777766666665544321 121111 111 1 111 233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
+...+..+-+........+...|+.|++++.+.
T Consensus 136 ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~ 168 (239)
T PF05276_consen 136 EKTRAEREHQRRARIYNEAEQRVQQLEKKLKRA 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777788888899999999999988773
No 363
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=78.32 E-value=3.5 Score=36.93 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.5
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
|.|+.|| -+|||.+|-| ++.-||+.+ ||||.-.++.|.
T Consensus 48 ~vGS~LIgQ~F~~~~yF~~RpSa~-~~~~y~~~~--SggSNl~psnp~ 92 (187)
T TIGR00681 48 VVGSALIGQTFTEEGYFHSRPSAI-NYSEYPTGA--SGGSNLAPSNPD 92 (187)
T ss_pred EEeeeeecCCCCCCCCcCCCCccc-CCCCCCccc--ccccCCCCCCHH
Confidence 5688888 8899997776 344588665 788854445554
No 364
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.67 E-value=50 Score=29.52 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHH--
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQR-- 201 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~-- 201 (285)
.-+|..+.+.++.|...+....++|..|.+-|.-- + -.++..|+.++..++..|...++++-.=.+.-.+++..+
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e--emQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~ 162 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTE--EMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQ 162 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 33444444444444444444444554444432210 0 223455566666666666666555543332222222222
Q ss_pred --HHHHHhHHHHHHHH
Q 023255 202 --EIMEKNIISVAQQI 215 (285)
Q Consensus 202 --q~meknli~ma~e~ 215 (285)
--|=+..-+|.+||
T Consensus 163 ~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 163 KYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 22334444566654
No 365
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.57 E-value=29 Score=26.34 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+..+..++.|+..++.+...+.....+|..+.+++..|-..|+
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666665554443
No 366
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=77.54 E-value=38 Score=29.73 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023255 157 AKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (285)
Q Consensus 157 ~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLra 220 (285)
+.++...-....++.|.+.|+.++..+...++...+.+.++..+.++++.++=+|..=+++-|-
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556778888888888888888888888888999999999999999888887776553
No 367
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.24 E-value=94 Score=32.11 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh---hhchhhhHHHHHHHHhHHHHHH
Q 023255 138 LCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK---KNRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 138 l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ek---k~~~e~~eq~q~meknli~ma~ 213 (285)
+...+.+....+...-.+|..++.+ .+.++.++..|+.|.++|..+..-|+.=| +++++.-+ ++ --+
T Consensus 385 L~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~--k~-------R~~ 455 (531)
T PF15450_consen 385 LSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEG--KA-------RER 455 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHH--HH-------HHH
Confidence 3444567788888888999999999 99999999999999999999988887765 33333322 22 224
Q ss_pred HHHHHHHHHHh
Q 023255 214 QIERLQAELAN 224 (285)
Q Consensus 214 e~ekLrael~n 224 (285)
||.-+|.||+.
T Consensus 456 eV~~vRqELa~ 466 (531)
T PF15450_consen 456 EVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHH
Confidence 78888888854
No 368
>PF13166 AAA_13: AAA domain
Probab=77.19 E-value=97 Score=32.27 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhH
Q 023255 204 MEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 204 meknli~ma~e~ekLrael~n~ 225 (285)
.+..+-....++..|++++.|.
T Consensus 436 ~~~~~~~~~~~i~~l~~~~~~~ 457 (712)
T PF13166_consen 436 AKEEIKKIEKEIKELEAQLKNT 457 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444555555555443
No 369
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=77.14 E-value=29 Score=26.21 Aligned_cols=22 Identities=9% Similarity=0.504 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVI 141 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~ 141 (285)
.++.++..|..++..+.++...
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l 29 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKL 29 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 370
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.08 E-value=57 Score=29.51 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=4.4
Q ss_pred CcccCceEE
Q 023255 1 MNIYGNSLH 9 (285)
Q Consensus 1 ~~ifG~tli 9 (285)
|.+|++++|
T Consensus 1 ~~~~~~~~v 9 (221)
T PF05700_consen 1 MSSINEVLV 9 (221)
T ss_pred CCCCccccc
Confidence 344555544
No 371
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.07 E-value=38 Score=27.55 Aligned_cols=37 Identities=35% Similarity=0.402 Sum_probs=21.4
Q ss_pred hhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 186 AIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 186 ~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
|+++-++.-..+-+++..+++++..+..++..+...+
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666665554
No 372
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.91 E-value=40 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.++.-+.+++++.........+|.++|..+.+.
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433333
No 373
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=76.83 E-value=57 Score=29.44 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekL 218 (285)
..++.+|.||...|.+.+++=..
T Consensus 205 ~~~~~~q~le~~ri~~~k~~l~~ 227 (251)
T cd07653 205 QIFDKLQELDEKRINRTVELLLQ 227 (251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 44567788888888877766554
No 374
>PLN02678 seryl-tRNA synthetase
Probab=76.77 E-value=19 Score=36.41 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023255 200 QREIME 205 (285)
Q Consensus 200 q~q~me 205 (285)
|.+-++
T Consensus 143 H~~Lg~ 148 (448)
T PLN02678 143 HVDLVE 148 (448)
T ss_pred HHHHHh
Confidence 333333
No 375
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=76.76 E-value=55 Score=29.15 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023255 75 LKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i 93 (285)
+.+++...+.+|..++.++
T Consensus 69 ~E~E~~~~~~el~~~E~rl 87 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRL 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 376
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=76.52 E-value=42 Score=27.73 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 52 AIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 52 ~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
..+-.+|+++|....--+.-.+.++++|...+.+|..-
T Consensus 3 K~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~~ 40 (114)
T PF10153_consen 3 KKRIRDIERLLKRKDLPADVRVEKERELEALKRELEEA 40 (114)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888666555667777888888888777663
No 377
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.44 E-value=96 Score=31.84 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=11.4
Q ss_pred hccHHHHHHHHHHHHHHHHhh
Q 023255 163 SKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ 183 (285)
-.++.++...+..+++-..+-
T Consensus 300 p~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665555533333
No 378
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.44 E-value=7.6 Score=37.42 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
+.+++.+..+.++..++.......++...+++.++..|..++.+ ..+...|+.+++.....+.++..-+.-
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44556666666666666555555555555555555555554443 234566667777777777766655443
No 379
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.28 E-value=42 Score=34.18 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 66 QRLAATHVALKQELSLAEQELRHLSSV 92 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l~~~ 92 (285)
+.|..+.+.++.+|+....+...|...
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~e 88 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAE 88 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444333
No 380
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=76.13 E-value=29 Score=30.19 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=51.1
Q ss_pred HHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023255 107 LYEKSLKLDAELR----VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 107 L~~k~~kleaelr----~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~ 181 (285)
++++--++|-++- ..+-.++-+...+.++.+|....+.|...+.-+++|++=|.+...+.-.+ +++.+..++.
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~eqV~ 125 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEEQVN 125 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHHHHH
Confidence 4444455566665 45677888888889999999999999999999999988888774443333 4444444433
No 381
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.08 E-value=51 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.|...+--....|...|+-...||..|...+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~ 73 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIG 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666666666654443
No 382
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.98 E-value=62 Score=29.41 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETE 176 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~L 176 (285)
.++.+-+|.-|..++.-=..|....+++...|...++-..-+... ..||.-.-.+|+.+
T Consensus 96 ~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v 155 (207)
T PF05010_consen 96 HKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQV 155 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444445555554444444444433 44444444444333
No 383
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.90 E-value=1e+02 Score=31.73 Aligned_cols=44 Identities=5% Similarity=0.292 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
|..+-+.|.+....+.....+|...+.+|+...+++......++
T Consensus 85 L~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 85 LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444333333334444444444444444444444333
No 384
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=75.73 E-value=36 Score=33.13 Aligned_cols=58 Identities=14% Similarity=0.338 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.+|...++.|.++++........+++.+. +.+.+ .+.+..-+..+..+++.++++...
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~----~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELS----KLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34566666666666666555555554444 33334 555555556666777777666544
No 385
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.68 E-value=9.7 Score=38.70 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhh-h---ccHHHHHHHHHHHHHHHHhhhhh
Q 023255 147 KDLNEINGDLAKARDE-S---KDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 147 aevq~LekDL~~~~~d-~---qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.+...|++.|..++.+ . ++...++.+|+.|..|+..++..
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 2 33344444444444444444333
No 386
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=86 Score=32.20 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSD 57 (285)
Q Consensus 44 ~n~Lee~L~~q~~E 57 (285)
++-|.+++..|.++
T Consensus 336 F~dL~~R~K~Q~q~ 349 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQE 349 (508)
T ss_pred hHHHHHHHHHHHHH
Confidence 77888888887663
No 387
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.53 E-value=69 Score=29.74 Aligned_cols=105 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 80 SLAEQELRHLSSVAASVKAE-RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 80 ~laqhEL~~l~~~i~~~~ae-~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
..+..+++.....+.++=.+ ..-.++.+.+...++--.....+.+++.+.+..+++++-....++=.+.--.|++|+..
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~ 97 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKA 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 159 ARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 159 ~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+++ ++..|..-+..++.|+.+.+..|
T Consensus 98 ~q~---elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 98 TQS---ELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhHHHHH
No 388
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=75.46 E-value=66 Score=30.96 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 122 ESMHAELDRVRADIEKLCVI-KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~-rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
+.--++|+.|-..+.+-... ..|+-+-|+.|.+-.++++.= ..+.-+|.+|++..++|-...-. .+...-|
T Consensus 156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~-------aRqkkAe 228 (302)
T PF07139_consen 156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILD-------ARQKKAE 228 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 33335777777766665444 456667777788877777776 77889999999999998765543 2344556
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHhH
Q 023255 200 QREIMEKNIISVAQ-QIERLQAELANA 225 (285)
Q Consensus 200 q~q~meknli~ma~-e~ekLrael~n~ 225 (285)
-++.|..--+.|+- ++--|||||-..
T Consensus 229 eLkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 229 ELKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 67777777777876 899999999655
No 389
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=75.46 E-value=50 Score=28.60 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHHHhhhhhhhhhhhhchh
Q 023255 178 QEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 178 qEl~~~ra~~e~ekk~~~e 196 (285)
+.+.+++..|+.|++.-..
T Consensus 114 ~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 114 GMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677788877765544
No 390
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=75.43 E-value=67 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=23.9
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
..+..++.+.+-+++-+....++-++.-+.+.
T Consensus 209 ~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l 240 (316)
T PRK11085 209 PGGQLEQAREILRDIESLLPHNESLFQKVNFL 240 (316)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888888777654
No 391
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.41 E-value=70 Score=29.74 Aligned_cols=127 Identities=10% Similarity=0.134 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCch------HH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 25 VLREPPLSTRALPPQHSPS------LH----HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 25 ydpeG~LsGGs~p~~~~~l------~n----~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
|.|-.+|=+++=|....|| .. .+.+.+.......-..|.|.-+.+...+++=.+=..+|.++..+...+.
T Consensus 94 fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~ 173 (243)
T cd07666 94 YGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALA 173 (243)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH
Q 023255 95 SVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (285)
Q Consensus 95 ~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI 173 (285)
..++++ +.+..||..+...++..... |..|+.+|+.+ ..-++.+--+.
T Consensus 174 k~~~dr---------------------~~~~~ev~~~e~kve~a~~~----------~k~e~~Rf~~~k~~D~k~~~~~y 222 (243)
T cd07666 174 NKKADR---------------------DLLKEEIEKLEDKVECANNA----------LKADWERWKQNMQTDLRSAFTDM 222 (243)
T ss_pred hhhhhH---------------------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 023255 174 ETERQEIHK 182 (285)
Q Consensus 174 e~LrqEl~~ 182 (285)
=...-.++.
T Consensus 223 ae~~i~~~~ 231 (243)
T cd07666 223 AENNISYYE 231 (243)
T ss_pred HHHHHHHHH
No 392
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=75.39 E-value=1.2e+02 Score=32.57 Aligned_cols=132 Identities=14% Similarity=0.227 Sum_probs=83.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq 136 (285)
.++..+..--|+..+...+++|....+.++..+...+.+.+.+...-| .. |..++.+|..++.++.-++
T Consensus 57 ~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~-~~----------L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 57 TSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSM-AQ----------LAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH-HH----------HHHHHHHHHHHHHHHHHHH
Confidence 344444445567777777777777777777777777776666553222 23 5667777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHH
Q 023255 137 KLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~ 213 (285)
+... ...++.++..+-. .+.++.+-..|.+|++.+.-+...-||+. .-.|+..++.-|=+|++
T Consensus 126 EA~~--------w~~l~~~v~~~~~-~~d~~~~a~~l~~m~~sL~~l~~~pd~~~-----r~~~le~l~nrLEa~vs 188 (766)
T PF10191_consen 126 EADN--------WSTLSAEVDDLFE-SGDIAKIADRLAEMQRSLAVLQDVPDYEE-----RRQQLEALKNRLEALVS 188 (766)
T ss_pred HHHh--------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHcCCCchhH-----HHHHHHHHHHHHHHHhh
Confidence 5332 3345555544332 35677888888889888888877777754 33455555555655554
No 393
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=75.31 E-value=44 Score=32.60 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhccHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK-----ARDESKDMAAIKAEIETER 177 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~-----~~~d~qkl~aLkaEIe~Lr 177 (285)
+-+.|+.++.++.....++......++.||.. ++....||..|+..|..++
T Consensus 152 enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 152 ENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444444433 2222444444444444443
No 394
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.26 E-value=15 Score=25.39 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
.+.++..-..+.++-..|....+.|.++|..++.-+
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777777777777776544
No 395
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.22 E-value=67 Score=29.42 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH---HHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI---ETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI---e~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
+..=...+..+...+......+...+..+-+++.+|..+ ..+-+.++.+. ....+.++...++++-.|+.+-..-.
T Consensus 58 ~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~ 137 (261)
T cd07648 58 FAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCL 137 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 200 QREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
.....+++..+ .++++|++.-+..|+.
T Consensus 138 e~e~~~~~~~s-~k~~eK~~~K~~ka~~ 164 (261)
T cd07648 138 ELERLRRENAS-PKEIEKAEAKLKKAQD 164 (261)
T ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHH
No 396
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=75.20 E-value=59 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=12.3
Q ss_pred HHHHHH-HHHHHHHHHHhHH
Q 023255 208 IISVAQ-QIERLQAELANAE 226 (285)
Q Consensus 208 li~ma~-e~ekLrael~n~e 226 (285)
|..||. |+..|+.++.+.+
T Consensus 93 l~~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 93 TLAEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 555553 7777777776666
No 397
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.14 E-value=1.4e+02 Score=33.18 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHS 56 (285)
Q Consensus 44 ~n~Lee~L~~q~~ 56 (285)
|..+..++.....
T Consensus 182 y~~~~~~l~er~k 194 (1047)
T PRK10246 182 YGQISAMVFEQHK 194 (1047)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 398
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=75.10 E-value=83 Score=30.46 Aligned_cols=63 Identities=6% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---DESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~---~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
++..-.|+...+.+-.....+.+.++..+.++|.+-. +|++-+-.+++-|-+|++|.+.+.-.
T Consensus 292 ~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~ 357 (384)
T KOG0972|consen 292 LREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQ 357 (384)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3333444455555555555666666666666666643 44666666666777777666655433
No 399
>PRK11546 zraP zinc resistance protein; Provisional
Probab=75.07 E-value=51 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~ 137 (285)
.+...+++..||++|-.++.||+.|. .+...+. .++.++.+||.+|+..+.+
T Consensus 56 ~~~f~~~t~~LRqqL~aKr~ELnALl---~~~~pD~------------------~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 56 HNDFYAQTSALRQQLVSKRYEYNALL---TANPPDS------------------SKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCCH------------------HHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999883 3233332 2355566677666664444
No 400
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=74.99 E-value=5 Score=36.34 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=26.0
Q ss_pred ccCceEE-------EeecCCCccccc----------CCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMS----------GRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTle----------GD~ydpeG~LsGGs~p~~~~~l 43 (285)
|-|+.|| -+|||.+|.|-. .+-||+.+ ||||.-.++.|.
T Consensus 50 vvGS~LIgQ~F~~~~YF~~RPSa~~~~~~~~~~~~~~~~y~~~~--SGgSNlgpsnp~ 105 (201)
T PRK13999 50 VIGSALIGQSFTGDRYFHGRPSATTAADPADASKTVPAPYNAAN--SMGSNLGPTSKA 105 (201)
T ss_pred EEeeeeecCCCCCCCCccCCCcccccccccccccccCCCCCccc--ccccCCCCCCHH
Confidence 5688888 889999887632 12477665 788844445553
No 401
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=74.97 E-value=32 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=9.4
Q ss_pred hccHHHHHHHHHHHHHHHH
Q 023255 163 SKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~ 181 (285)
.++|...+.+++.|++++.
T Consensus 60 ~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 60 KSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555543
No 402
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=74.91 E-value=1e+02 Score=31.78 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-hccH
Q 023255 94 ASVKAERDAEVRELYEKSLKLDAELRVI-ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL-----AKARDE-SKDM 166 (285)
Q Consensus 94 ~~~~ae~e~~~r~L~~k~~kleaelr~~-e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL-----~~~~~d-~qkl 166 (285)
+.++.+. +=.++.+|+..+... .++..-|..-..+.......-++|..++..+.+|| .+.... ..++
T Consensus 5 ~~l~~ed------l~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l 78 (593)
T PF06248_consen 5 GPLSKED------LRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQL 78 (593)
T ss_pred CCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHH-----HhHHHHHHHHHHHHHHHHh
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIME-----KNIISVAQQIERLQAELAN 224 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~me-----knli~ma~e~ekLrael~n 224 (285)
....+++..+++|+......++.-+.. .+.-++.+..+ ++++.-+.-+++++..|..
T Consensus 79 ~~a~~e~~~L~~eL~~~~~~l~~L~~L-~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 79 RDAAEELQELKRELEENEQLLEVLEQL-QEIDELLEEVEEALKEGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
No 403
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.88 E-value=24 Score=28.78 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=26.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 105 r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
++|+++...||.. +..+-+++.+++..+..+..+-..|.-+-+.|..-|.+.
T Consensus 4 ~~l~~~l~~le~~---l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQ---LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655 444445555555555555555555544444444444443
No 404
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=74.86 E-value=4.7 Score=36.06 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=25.3
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
|-|+.|| =+|||.+|-| -|||.+ ||||.-.+++|.
T Consensus 48 vvGS~LIgQ~Ft~~~yF~~RpSa~----~y~~~~--SggSNl~psnp~ 89 (186)
T PRK14002 48 VVGYANIGQSFTQDIYFWGRPSAV----GYNAAG--SGGSNKGPSNPE 89 (186)
T ss_pred EeeeeeecCCCCCCCCccCCCCCC----CCCccc--ccccCCCCCCHH
Confidence 5688898 8899998876 388665 788844445554
No 405
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=74.81 E-value=72 Score=30.54 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=19.6
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
.+.++.+...++.|...+..+...++.-.+......+.
T Consensus 52 ~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 52 RQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555444444444444
No 406
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.66 E-value=35 Score=26.53 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~ 161 (285)
++++|.+=.++..+++.+.+.+.+|..+-+.+..|-.-|+.
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777777777777766653
No 407
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=74.63 E-value=45 Score=28.22 Aligned_cols=76 Identities=8% Similarity=0.257 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqe 144 (285)
.+.+......|-.+|..+-+++..|-..+..+....|.|+..| ..+..|+..+..+.++...+..+
T Consensus 64 ~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i--------------~~L~~E~~~~~~el~~~v~e~e~ 129 (144)
T PF11221_consen 64 PEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRI--------------KELEEENEEAEEELQEAVKEAEE 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667888889999999888887665554444333 33344444444444444444444
Q ss_pred HHHHHHHHHH
Q 023255 145 MIKDLNEING 154 (285)
Q Consensus 145 L~aevq~Lek 154 (285)
+-.+|+.+=.
T Consensus 130 ll~~v~~~i~ 139 (144)
T PF11221_consen 130 LLKQVQELIR 139 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 408
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.16 E-value=25 Score=28.92 Aligned_cols=51 Identities=12% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 105 RELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 105 r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
++|+++...||.. +..+-+++.+++..+.++..+-..|.-+-+.|.+-|.+
T Consensus 4 ~elfd~l~~le~~---l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQN---LGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 44555555555555555555555555555555544444
No 409
>PRK00106 hypothetical protein; Provisional
Probab=73.83 E-value=1.2e+02 Score=31.55 Aligned_cols=60 Identities=7% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
.|..+-..|.+....+.....+|...+.+|+..++++.+....++.-.......+++.-.
T Consensus 105 rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444455555555566666666666655555544444444444433
No 410
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.71 E-value=32 Score=25.04 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 50 ~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
++..+..+|+.|-..-..|......|+.++..++.|-.+...+|...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666678888888888889999999999999999999998888754
No 411
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=73.61 E-value=38 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEK 137 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~ 137 (285)
..++++++||+.++..+..
T Consensus 24 ~e~~~L~eEI~~Lr~qve~ 42 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEH 42 (86)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3346666666666665543
No 412
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.60 E-value=1.3e+02 Score=32.03 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE-LRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleae-lr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
....-..|.++|+.++-+|.-+-..+....--.+ .+.|.|.. ..-.+.+...+.+++..-.+-.....++.
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--------~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--------ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888888888777666653322211 01111111 12234444444444544444455555555
Q ss_pred HHHHHHHHHHHHH----------hhh--hccHHHHHHHHHHHHHHH
Q 023255 147 KDLNEINGDLAKA----------RDE--SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 147 aevq~LekDL~~~----------~~d--~qkl~aLkaEIe~LrqEl 180 (285)
.+++.|..+|..- ..| ..++.+++..|..|++|.
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek 176 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK 176 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH
Confidence 5555555555443 122 345666666665555543
No 413
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.42 E-value=74 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhH
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAER 100 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~ 100 (285)
.|+..-.+|..|.....+|.+.++-.+-+..++.+.+.+++++.
T Consensus 91 ~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~ 134 (389)
T KOG4687|consen 91 DIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEK 134 (389)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 56666677999999999999999999999999999999888773
No 414
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=73.34 E-value=1.1 Score=48.47 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.+...-.....+-.+...|+.|+..+..+|........
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~ 373 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA 373 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555566666666666665544443
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.28 E-value=54 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 023255 74 ALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 74 ~LqqEL~laqhEL~~l~~~i~ 94 (285)
.+-.+|...+.++..+..+..
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 416
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=73.28 E-value=17 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~-~~rqeL~aevq~LekDL~~~~~d 162 (285)
-+.+++...-|.|...|++.+- +.+..+..+|.....++..++.+
T Consensus 31 e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 31 ERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555566555554 44555666666655555555433
No 417
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=73.18 E-value=45 Score=26.45 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
+.....-++.+|.....++.+|+.-.
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN 30 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMN 30 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444556666777777776664433
No 418
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=73.04 E-value=91 Score=29.95 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 72 HVALKQELSLAEQELRHLSSVAASVKAERD-AEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 72 h~~LqqEL~laqhEL~~l~~~i~~~~ae~e-~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
+..+.+.|...+.+|..++.++.+-+.-.- ...-.-.-+++.|+.++..++.+..-+..++.-+.........+..-++
T Consensus 12 ~~~~~~~l~~~~~~l~~lq~qlsTGk~~d~~s~~~~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~~~aL~~v~~~~~ 91 (348)
T PRK06008 12 QNALRLTIAKLQAELSKAQTEATTGRYADVGLSLGSKTARSVSLRREYDRLASLTDSNSLVTQRLTATQTALGQIIEAAQ 91 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666653332210 0000123456678888999999999999999999988888888888888
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 151 ~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
++...+-...........+..|++.+..++...-.+
T Consensus 92 ~~~~~l~~~~~~~~~~~aia~e~~~~~~~l~~~~Nt 127 (348)
T PRK06008 92 SFLNDLLAANSSAQTAATVAQSARSALSSLTSTLNT 127 (348)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 888777653333667788888998888888765443
No 419
>PF15463 ECM11: Extracellular mutant protein 11
Probab=73.04 E-value=20 Score=30.23 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHH
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQE 179 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqE 179 (285)
|.+-..-+++|...|.++...++.++.++++-... ..+...+...++.||+.
T Consensus 82 l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 82 LEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667889999999999999999999997777 77788888888888765
No 420
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.96 E-value=58 Score=31.08 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
|...-+.|+--+...+.+++.+...+.++.++- -.| -..++--|.|+.+.+..+..|.+.|-....
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde----a~L----------~~Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE----AAL----------GSKIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHH
Q 023255 148 DLNEINGDLAKA 159 (285)
Q Consensus 148 evq~LekDL~~~ 159 (285)
+-..-+++|+++
T Consensus 169 EyE~~EeeLqkl 180 (338)
T KOG3647|consen 169 EYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHH
No 421
>PRK13676 hypothetical protein; Provisional
Probab=72.89 E-value=42 Score=26.96 Aligned_cols=82 Identities=9% Similarity=0.195 Sum_probs=59.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~q-kl~aLkaEIe~LrqEl~~~r 184 (285)
.+||++..|...|+..++++ ++..+...+.. ...-+.|-.+-+.+..++...+..+. -.++...++..+..++..-.
T Consensus 4 ni~d~A~eL~~aI~~s~ey~-~~~~A~~~l~~-d~~a~~li~~F~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~~n~ 81 (114)
T PRK13676 4 NIYDLANELERALRELPEYK-ALKEAKEAVKA-DEEAKKLFDEFRALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQNE 81 (114)
T ss_pred hHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCH
Confidence 58999999999999999996 77777777643 44556666777777777777665544 34677788888887776655
Q ss_pred hhhhh
Q 023255 185 AAIEC 189 (285)
Q Consensus 185 a~~e~ 189 (285)
..-+|
T Consensus 82 ~i~~y 86 (114)
T PRK13676 82 LLSKL 86 (114)
T ss_pred HHHHH
Confidence 44444
No 422
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.65 E-value=26 Score=32.12 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqe 144 (285)
-+-+..++..++-.|...+.+..+|...+. ++.. +..+-+++.+|.+++.+|+.+....+.
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~--ka~~-----------------~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLE--KAKT-----------------VEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544444 2222 223344455555555555555555554
Q ss_pred HHHHH
Q 023255 145 MIKDL 149 (285)
Q Consensus 145 L~aev 149 (285)
|..+|
T Consensus 188 l~~~v 192 (262)
T PF14257_consen 188 LDDRV 192 (262)
T ss_pred HHHhh
Confidence 44443
No 423
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=72.37 E-value=2.7 Score=40.69 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 199 EQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 199 eq~q~meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
-..++|+-++-.|.+-|--+-.-|.+-++|-.+.
T Consensus 119 s~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 119 SSVSALSTDVSNLKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence 3445555555555555555555566666776554
No 424
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.36 E-value=43 Score=25.86 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
...+.++.++..+..++.++......+..++..++..|..
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777777776654
No 425
>PRK11281 hypothetical protein; Provisional
Probab=72.18 E-value=1.8e+02 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
++...|++.++.+..++....+.+...
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333444444444444444444444433
No 426
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.14 E-value=31 Score=27.76 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
+.++.++...+.+.....+.+..+++.|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444444444
No 427
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.14 E-value=1.6e+02 Score=32.40 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh----hhchhhhHHHHHHHHhHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEK----KNRASNHEQREIMEKNIISV 211 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ek----k~~~e~~eq~q~meknli~m 211 (285)
+++++.+++.++|-..++-..++.-. -.+.++..|.-++-..|.--
T Consensus 293 Vk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 293 VKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777666555544444332 33444444544555444443
No 428
>PRK09546 zntB zinc transporter; Reviewed
Probab=72.12 E-value=75 Score=30.01 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.2
Q ss_pred CCcccCCCC-CCC
Q 023255 241 STSYAASYG-NPD 252 (285)
Q Consensus 241 ~~~y~~~~g-n~~ 252 (285)
.|-||||++ -|+
T Consensus 281 aGiyGMNf~~mPe 293 (324)
T PRK09546 281 TGLFGVNLGGIPG 293 (324)
T ss_pred HhhhccccCCCCC
Confidence 578999996 454
No 429
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=72.04 E-value=45 Score=26.06 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=56.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH-HHHHHHHHHHHHHHHhhhh
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM-AAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl-~aLkaEIe~LrqEl~~~ra 185 (285)
+++++..|-..|+..+.++ ...+++..+..- ..-+.+-.+.+.+.+++..++..+... .+...++..+..++..-..
T Consensus 2 I~~~a~eL~~~I~~s~ey~-~~~~a~~~l~~d-~e~~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~~~~l~~~p~ 79 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEYK-RYKAAEEALEAD-PEAQKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQELQEELMQNPV 79 (108)
T ss_dssp HHHHHHHHHHHHHTSHHHH-HHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHcCHHHH-HHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHcCHH
Confidence 4566666666677777775 666666655432 234456666777788888888777776 7888888888888887776
Q ss_pred hhhhhh
Q 023255 186 AIECEK 191 (285)
Q Consensus 186 ~~e~ek 191 (285)
.-+|-.
T Consensus 80 v~~y~~ 85 (108)
T PF06133_consen 80 VKEYLQ 85 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 430
>PHA02607 wac fibritin; Provisional
Probab=71.92 E-value=97 Score=31.48 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh-----------
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRA----------- 185 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra----------- 185 (285)
+..+...+.+|..|+..+.+......-+...+..++.|+-.|+.. ...-.-.+.+|-=+|+||-.-..
T Consensus 91 i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~diNG~p~p~s 170 (454)
T PHA02607 91 IDQINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIEADIGVFNPEADPVTRTIRNDILWIKTELGAYPGFDINGNPDPGS 170 (454)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcCCcCcccCCCccchhhhHHHHHHHhccCCCCCCCCCcCCCC
Confidence 445555666666666666666666677777777777777777766 56667778888888888754221
Q ss_pred -------hhhhhhhhchhhhHHHHHHHHhHH-----HHHHHHHHHHHHHHh
Q 023255 186 -------AIECEKKNRASNHEQREIMEKNII-----SVAQQIERLQAELAN 224 (285)
Q Consensus 186 -------~~e~ekk~~~e~~eq~q~meknli-----~ma~e~ekLrael~n 224 (285)
-|..-..+=..+-.....+|.++. ++.+||.+||+||=.
T Consensus 171 ~gtGmK~ri~~n~~~~~~~~~Ri~~LE~~~~~sdVg~Lt~~v~~lR~ElG~ 221 (454)
T PHA02607 171 TGTGMKYRIIDNTTALVDHGQRITELENDWADSDVGQLTREVNDLRAELGP 221 (454)
T ss_pred CCCceeeehhhhHHHHHhhhhHHHHHHhhhhhcCchHHHHHHHHHHHHhCC
Confidence 111112222334455666777775 688999999999943
No 431
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=71.86 E-value=1.5e+02 Score=31.88 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=36.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
.++++.|+..+..||..+......|+.-..-|--+--++-+=-+.+...---|.+|+-|+.|+.+.
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 556666777777777766666655554332222222222222233333444677888888877653
No 432
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=71.84 E-value=63 Score=27.60 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELS 80 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~ 80 (285)
++.+++++...+..+.++..+..+.......+.....
T Consensus 28 f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 28 FEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 6677777777777777777777766665555544443
No 433
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=71.77 E-value=30 Score=25.32 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh--hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAK--ARDE--SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~--~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
+++.+|......+..++.++.+-|.. |-+. ..-+..-+..+..+..++.+++..++
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555544432 2222 22234444444444444444444443
No 434
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.69 E-value=60 Score=27.29 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
.+.++.|+..++.++.......+.+..-|..|+..|.+
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444444444444444444443
No 435
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.67 E-value=40 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 52 AIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 52 ~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
......|..++.-+++|-.+...|++++.....|=..|.....
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888888888888777755444
No 436
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=71.63 E-value=64 Score=33.21 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 146 IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 146 ~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~ 223 (285)
-..++.|..||..++ |..+|-.|+ ...+|||||.+.+.+.|--. +|-.--+=+.+.|.|+.
T Consensus 217 lq~l~lMK~DiaN~~------------I~~lrp~L~--~~sveyEkk~Fqk~l~~~~~---~l~~t~~WL~~~~~e~~ 277 (513)
T KOG1981|consen 217 LQLLELMKLDIANYQ------------IRILRPALQ--ENSVEYEKKKFQKLLGQAPV---SLPFTRQWLDKARSELE 277 (513)
T ss_pred HHHHHHHHHHHHHHH------------HHHhhHHHH--HhhHHHHHHHHHHHHhhCCC---CCcHHHHHHHHHhcccc
Confidence 344555555555543 556666676 78999999999999984321 33334456777888774
No 437
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.52 E-value=46 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=30.5
Q ss_pred HhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 181 HKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 181 ~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
.=+..-||..|-.|..+.+..+..--+=-.+.+|-++|+.|-.+-..|-|+-
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555556677788888877777766654
No 438
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=71.34 E-value=59 Score=32.04 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHH-HHHHHHHHHHhHHh
Q 023255 208 IISVAQ-QIERLQAELANAEK 227 (285)
Q Consensus 208 li~ma~-e~ekLrael~n~e~ 227 (285)
|..||. |++.|+.++...+.
T Consensus 93 ~~~~a~~e~~~l~~~l~~le~ 113 (364)
T TIGR00020 93 TFNELDAELKALEKKLAELEL 113 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444443 67777777766663
No 439
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.81 E-value=63 Score=27.51 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.++.++.+....+.........+..++..+..+
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444444444444333
No 440
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.62 E-value=1.2e+02 Score=30.20 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 152 INGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 152 LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
+..++.++.+. ...+..+++.+..|.+++..+++.... .-.-+..|..+-||++-.|.=+...=.|-
T Consensus 329 ~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~-----------~~~~~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 329 IAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSK-----------LPKLQVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333 333455555555555555554444332 22233455556677777666554443443
No 441
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=70.52 E-value=55 Score=26.35 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
+.++.+++.++.++....+.+.++++.++.-
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 442
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.48 E-value=1.5e+02 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
.+=+..+...++++|..++..|+.........
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~ 300 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV 300 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455666777777777777777777665433
No 443
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=70.44 E-value=71 Score=28.65 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=11.1
Q ss_pred HHHHHHhhhhhhhhhhhh
Q 023255 176 ERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 176 LrqEl~~~ra~~e~ekk~ 193 (285)
..+.+..++..|+.|+..
T Consensus 142 ae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 142 ANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566667777777654
No 444
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=70.15 E-value=63 Score=27.85 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
..-+..+.+++..+..++++|...++....++.+|..=|.++
T Consensus 46 ~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 46 AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777778888888888888888888888887766653
No 445
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.13 E-value=33 Score=35.54 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=4.8
Q ss_pred CcccccCCccC
Q 023255 16 SQFTMSGRRVL 26 (285)
Q Consensus 16 rsvTleGD~yd 26 (285)
..|+++|-..+
T Consensus 99 ~~l~l~g~~v~ 109 (555)
T TIGR03545 99 EELAIEGLAFG 109 (555)
T ss_pred eEEEEecCEEE
Confidence 34444444433
No 446
>PLN02939 transferase, transferring glycosyl groups
Probab=70.06 E-value=1.9e+02 Score=32.33 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhHHhh
Q 023255 214 QIERLQAELANAEKR 228 (285)
Q Consensus 214 e~ekLrael~n~e~r 228 (285)
|.-.||.=+-.-+.|
T Consensus 436 ~a~~lr~~~~~~~~~ 450 (977)
T PLN02939 436 DAKLLREMVWKRDGR 450 (977)
T ss_pred hHHHHHHHHHhhhhh
Confidence 555566555444433
No 447
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.85 E-value=33 Score=34.11 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 137 KLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL 156 (285)
++......|.++...+.+++
T Consensus 41 ~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 448
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=69.34 E-value=52 Score=32.22 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccHHHHH-------HHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEING-DLAKARDESKDMAAIK-------AEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~Lek-DL~~~~~d~qkl~aLk-------aEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
+.|..+...+..+.+..+.+.+.|.+-+. ++...+.|-.+...|- .+++..+..+..+++.+.-=.
T Consensus 98 a~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~------ 171 (352)
T COG1566 98 AALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ------ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH------
Confidence 33333333333333333334444444444 2444444444443333 444444444444444432221
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 198 HEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 198 ~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
..-.+|+.....+...+.+.+++++
T Consensus 172 ----~~~~~~~~~l~~~~~~~~~~v~~a~ 196 (352)
T COG1566 172 ----AAQKQNLALLESEVSGAQAQVASAE 196 (352)
T ss_pred ----HHHHHHHHHHhhhhccchhHHHHHH
Confidence 2233444445444444555544443
No 449
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=69.29 E-value=65 Score=26.74 Aligned_cols=104 Identities=14% Similarity=0.262 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN---GDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le---kDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e 196 (285)
..++.-...++++.++.+....|+.|+.+++.=+ .+|.-+..| +++=.|-.- =-+++++..+|+.++ .+.|
T Consensus 6 kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d-~~VYKliGp-vLvkqel~EAr~nV~----kRle 79 (120)
T KOG3478|consen 6 KMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEED-SNVYKLIGP-VLVKQELEEARTNVG----KRLE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc-chHHHHhcc-hhhHHHHHHHHhhHH----HHHH
Confidence 3444445666777788888888888887776533 333333333 222111100 114556666665542 1222
Q ss_pred h-hHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhH
Q 023255 197 N-HEQREIMEKNIISVAQQIERLQAELANAEKRA 229 (285)
Q Consensus 197 ~-~eq~q~meknli~ma~e~ekLrael~n~e~r~ 229 (285)
. ....+-.|.++-.|-+|.+|.|..+++.-+-+
T Consensus 80 fI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 80 FISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22456678888889999999999998887543
No 450
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=69.25 E-value=70 Score=29.57 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhh
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASN 197 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~ 197 (285)
...+.+.+.+ +.+.+..++.||+.-...
T Consensus 93 ~~A~~ea~~~---~~~a~~~ie~Ek~~a~~~ 120 (250)
T PRK14474 93 NEAREDVATA---RDEWLEQLEREKQEFFKA 120 (250)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3444444443 456677777777654433
No 451
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.14 E-value=1.2e+02 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQE------MIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqe------L~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~ 182 (285)
++.++..+..+..++.++...++. ...+|..|-.=|.+|..=...||.+-.-|..|+.=+..
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~ 330 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEE 330 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 455555555555555555544443 34677777777777777677788877777666544433
No 452
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.12 E-value=1.1e+02 Score=29.12 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEM------IKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL------~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
+|.+.+..++.++=++.=||.-+.++...++-+ ..+.+...++|... ...+..+..++....+++..++..
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~---~~ELe~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELK---KEELEELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555665555544332222 12222222222211 222333344444444444444444
Q ss_pred hhhhhhhchhhhHHHHHHHHhHHHHHHHHHHH
Q 023255 187 IECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 187 ~e~ekk~~~e~~eq~q~meknli~ma~e~ekL 218 (285)
|..=+.-=.++-...-.|.|++..+-.=|+|.
T Consensus 230 i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 230 ITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43222222233333444555555555555554
No 453
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=69.00 E-value=53 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
+...|...++.+...+..++.+++|=
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555553
No 454
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.97 E-value=1.7e+02 Score=31.53 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHhhHHHH
Q 023255 214 QIERLQAELANAEKRARAA 232 (285)
Q Consensus 214 e~ekLrael~n~e~r~~a~ 232 (285)
|++.|.--|.-||.|.--.
T Consensus 613 Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666677777776544
No 455
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=68.86 E-value=92 Score=28.31 Aligned_cols=160 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE--- 136 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq--- 136 (285)
.+-..+-..+..|+.+|..++..+.-+...+...... ++..+..|--+++|+|-.+...+.-..|-.+.-.+..
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 137 ----------------------KLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 137 ----------------------~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
-..+.+.+|..++..+...+.-+..- .+++...+.+|..+...|..+..--|+-
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a 163 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFA 163 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q ss_pred hhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 191 KKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 191 kk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
-+.-+.+-...--||..+..+.-+-..+..+|
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~ky~~~~~eL 195 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEKYEEAKKEL 195 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHH
No 456
>PLN02320 seryl-tRNA synthetase
Probab=68.81 E-value=35 Score=35.04 Aligned_cols=30 Identities=7% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
-.+..+..++..++++|.++++.++.+|..
T Consensus 96 ~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 96 LELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555666666666665543
No 457
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.65 E-value=26 Score=32.78 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~ 182 (285)
.++.++..++....+|.++|..+++.+..++.. ...-.+++.+++.|+..+-.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhcc
Confidence 466677777777777777777777777777733 44556666677777766543
No 458
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=68.50 E-value=8.4 Score=31.53 Aligned_cols=47 Identities=11% Similarity=0.325 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 143 QEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 143 qeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
+.+.+++..+.+++...+...++++.++++++.+++++......+=.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~ 48 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPA 48 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566777788888777766888999999999888888776665543
No 459
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.44 E-value=90 Score=28.05 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
+..++.+|.+++..+-...+..+.+..++..+...+.+|...
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556777777777777777777777777777777777643
No 460
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.32 E-value=1.6e+02 Score=30.89 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=6.9
Q ss_pred eEEEeecCC
Q 023255 7 SLHTTLHNH 15 (285)
Q Consensus 7 tlivtf~p~ 15 (285)
++||||-|.
T Consensus 303 tlIi~csPs 311 (607)
T KOG0240|consen 303 TLIICCSPS 311 (607)
T ss_pred EEEEecCCc
Confidence 677888776
No 461
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.25 E-value=14 Score=29.90 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
.+...+++++.+++.+++++....+.|..+|+.+..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666777777766666666666666665553
No 462
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.09 E-value=1.5e+02 Score=30.42 Aligned_cols=145 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh----HHHHHHHHHH---
Q 023255 44 LHHLEDRIAIQHS-------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE----RDAEVRELYE--- 109 (285)
Q Consensus 44 ~n~Lee~L~~q~~-------EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae----~e~~~r~L~~--- 109 (285)
.|.|++.++.+-. |-...=.-++.|.......+..|+-..-+-..|+-.+.++++. +|.+|-++-+
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnk 443 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNK 443 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q ss_pred ---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhh
Q 023255 110 ---KSLKLDAELRVIESMHAELDRVRADIEKLC-VIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 110 ---k~~kleaelr~~e~lk~El~qlr~eiq~l~-~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~r 184 (285)
..+-|+..|..-++--.-|++++.++++.. +...-|..+-...++++--++.+ .+.-++=.+|.+.||..+.++=
T Consensus 444 svsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 023255 185 AAIE 188 (285)
Q Consensus 185 a~~e 188 (285)
+.+.
T Consensus 524 aqvk 527 (527)
T PF15066_consen 524 AQVK 527 (527)
T ss_pred HhcC
No 463
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=67.91 E-value=58 Score=31.70 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhccHH-----HHHH----HHH----HHHHHHHhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA---KARDESKDMA-----AIKA----EIE----TERQEIHKGRA 185 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~---~~~~d~qkl~-----aLka----EIe----~LrqEl~~~ra 185 (285)
+..|.++...+.++..+.-..|-|.=++.-|++|+. +|++....|+ +-.+ ++. ....+.+..-+
T Consensus 15 ~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~ 94 (355)
T PF09766_consen 15 KKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLA 94 (355)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHH
Confidence 334444444444444444444445555555555555 4555543331 1111 110 11233444455
Q ss_pred hhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 186 AIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 186 ~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
-+++|-..+-++.++.+.+++.-..+..|+.+.+..|.+....
T Consensus 95 RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~ 137 (355)
T PF09766_consen 95 RLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQ 137 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6777777888899999999999999999999999988887744
No 464
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=67.91 E-value=91 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
|...+..++.|.+.|..+|.+|+-
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555554444443
No 465
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=67.61 E-value=54 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKA 171 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLka 171 (285)
.+..-+..+...|..+......+..++....+.+.....+.+++.-|+.
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555544444444443
No 466
>PF14282 FlxA: FlxA-like protein
Probab=67.33 E-value=19 Score=29.06 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIH 181 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~ 181 (285)
+..|..+|..|..+|.
T Consensus 53 ~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 467
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=67.27 E-value=79 Score=26.92 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQ-------------EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rq-------------eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+-.-+.+|+++...+.+....+- -...+|+++.+||+. ...++.+.+.++-.+..+|.+.+.++
T Consensus 38 ~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~n---kq~~l~AA~~~l~~~~~el~~~~~al 114 (136)
T PF11570_consen 38 LNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQN---KQNKLKAAQKELNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44455666666665555222221 123677888888776 35678888888888888888888887
No 468
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.96 E-value=92 Score=27.61 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHH
Q 023255 211 VAQQIERLQAELANAE 226 (285)
Q Consensus 211 ma~e~ekLrael~n~e 226 (285)
+..++++||.||..-+
T Consensus 107 lt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 107 LTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555566654443
No 469
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=66.80 E-value=1.1e+02 Score=28.24 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=36.7
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhh-hhchh-----hhHHHHH-----------HHHhHHHHHHHHHHHHHHHHhH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEK-KNRAS-----NHEQREI-----------MEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ek-k~~~e-----~~eq~q~-----------meknli~ma~e~ekLrael~n~ 225 (285)
.+....|++|.|+|+.+|.+.+..+-.|- |..++ ++|.+.. -|-. --.-+||--||++|+.+
T Consensus 115 ~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s-~kId~Ev~~lk~qi~s~ 193 (220)
T KOG3156|consen 115 RSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEIS-TKIDQEVTNLKTQIESV 193 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHHH-HHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777776654 22222 1222211 1111 23445999999999887
Q ss_pred H
Q 023255 226 E 226 (285)
Q Consensus 226 e 226 (285)
+
T Consensus 194 K 194 (220)
T KOG3156|consen 194 K 194 (220)
T ss_pred H
Confidence 6
No 470
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.80 E-value=62 Score=25.60 Aligned_cols=17 Identities=0% Similarity=0.141 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023255 137 KLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 137 ~l~~~rqeL~aevq~Le 153 (285)
.+....+.+..++..++
T Consensus 74 ~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 74 TIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 471
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=66.77 E-value=1.3e+02 Score=29.32 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
.++..+...+.++.........+......++.++..++.++...
T Consensus 96 ~~~~~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a 139 (390)
T PRK15136 96 DAEQAFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQA 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333222222222233344444444444433
No 472
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=66.76 E-value=1e+02 Score=27.99 Aligned_cols=150 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHH
Q 023255 60 SLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVI--ESMHAELDRVRADIEK 137 (285)
Q Consensus 60 ~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~--e~lk~El~qlr~eiq~ 137 (285)
..|.+-+..-.....+++-++-+-.++..+...+...+.. +...... .... +.+...|.+..+.+..
T Consensus 28 ~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~----------~~~~s~~eLeq~l~~~~~~L~~ 96 (240)
T PF12795_consen 28 SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEI----------LANLSLEELEQRLSQEQAQLQE 96 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccC----------cccCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHH
Q 023255 138 LCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIER 217 (285)
Q Consensus 138 l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ek 217 (285)
+.....++..++..+..-..++. +.+.+.+..++.+...+......=+ ..-.-.+.-..+-.+...-.++.-
T Consensus 97 ~q~~l~~~~~~l~~~~~~p~~aq---~~l~~~~~~l~ei~~~L~~~~~~~~-----~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 97 LQEQLQQENSQLIEIQTRPERAQ---QQLSEARQRLQEIRNQLQNLPPNGE-----SPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred HHHHHHHHHHHHHHHHccHHHHH---HHHHHHHHHHHHHHHHHhccCCCCc-----chhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHhh
Q 023255 218 LQAELANAEKR 228 (285)
Q Consensus 218 Lrael~n~e~r 228 (285)
|+.|+.+...|
T Consensus 169 le~el~s~~~r 179 (240)
T PF12795_consen 169 LEQELLSNNNR 179 (240)
T ss_pred HHHHHHCcHHH
No 473
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=65.96 E-value=1.3e+02 Score=31.30 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
+.+.....+|++....--+|++++.+...=-+ --++...+|..++- |+--
T Consensus 584 v~qs~~~~~q~~~~~~fs~q~~q~~~~~tldd--------------------fq~~~hrdirNl~~----------ell~ 633 (673)
T KOG4378|consen 584 VDQSCEKVEQELEYVTFSNQRLQANKMTTLDD--------------------FQVENHRDIRNLAL----------ELLL 633 (673)
T ss_pred HHhhhhhHHhhcccchhHHHHHHHHhhhhHHH--------------------HHHHhHHHHHHHHH----------HHHH
Confidence 34445556677777777777776655421111 12222233332222 2233
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 148 evq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
+-..-+.||.++..--..=..|++||+-||+|-+++|.-
T Consensus 634 Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 634 QFHMFMREMSRLLERYNENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhcc
Confidence 445555666665533222234889999999998888753
No 474
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=65.91 E-value=11 Score=33.77 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=28.0
Q ss_pred ccCceEE-------EeecCCCcccccCCccCCCCCCCCCCCCCCCCch-HHHHHHHHH
Q 023255 3 IYGNSLH-------TTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS-LHHLEDRIA 52 (285)
Q Consensus 3 ifG~tli-------vtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l-~n~Lee~L~ 52 (285)
|-|+.|| -+|||.+|-+=.++ ||+.+ ||||.-.++.|. ....++++.
T Consensus 49 vvGS~LIgQ~ft~~~yF~~RPSA~~y~~-y~~~~--SggSNl~psn~~l~~~v~~~~~ 103 (188)
T PF02669_consen 49 VVGSALIGQPFTSPRYFHPRPSAVDYNT-YNAAA--SGGSNLGPSNPELRERVEERIA 103 (188)
T ss_pred EEEEEEecccCCCCCeeeCCCCCcCCCC-CCccc--cccccCCCCChHHHHHHHHHHH
Confidence 5688888 89999977752222 66654 578743344443 344444433
No 475
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.90 E-value=17 Score=35.64 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHHhhHHH
Q 023255 211 VAQQIERLQAELANAEKRARA 231 (285)
Q Consensus 211 ma~e~ekLrael~n~e~r~~a 231 (285)
+..++.+|..-|...+.|.|-
T Consensus 170 ~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 334555566666666666664
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.89 E-value=1.8e+02 Score=30.59 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccH-------HHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDM-------AAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl-------~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
++...++|+..++.-...|..+..+....-..|++-|+++..- +..+ -+-+.|+.-+-.+++++-++||.-|
T Consensus 603 ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 603 DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443322 2222 2334555555555666666666655
Q ss_pred hhchhhhHHHHHHHHh
Q 023255 192 KNRASNHEQREIMEKN 207 (285)
Q Consensus 192 k~~~e~~eq~q~mekn 207 (285)
+..-. |.+-|++-
T Consensus 683 ~~~~K---Q~~H~~~v 695 (741)
T KOG4460|consen 683 MKKDK---QQQHMEKV 695 (741)
T ss_pred HHHHH---HHHHHHHH
Confidence 55444 44444443
No 477
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=65.81 E-value=1.4e+02 Score=30.27 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=6.0
Q ss_pred HHHHHHHHH
Q 023255 214 QIERLQAEL 222 (285)
Q Consensus 214 e~ekLrael 222 (285)
..+|||+..
T Consensus 261 qldkL~ktN 269 (447)
T KOG2751|consen 261 QLDKLRKTN 269 (447)
T ss_pred HHHHHHhhh
Confidence 567777764
No 478
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=65.65 E-value=75 Score=26.12 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDL---NEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aev---q~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl 180 (285)
..+..++..|..++..+..+......+.... ..+.++|.....+ ......++..|+.|+...
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444444332 3455555555555 555566666666665543
No 479
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.61 E-value=1.2e+02 Score=28.34 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHH---HHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKA---EIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLka---EIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
++.-...++.+++.+.....++...++.+-++|.+|..+ .+.-+..+. ..-...+-++....+++--|+.+.-.-.
T Consensus 65 ~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~ 144 (269)
T cd07673 65 FAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCL 144 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 200 QREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~n~e 226 (285)
....+-+.=.+ ..+|||+...+..|+
T Consensus 145 e~e~~~~~~~t-~k~leK~~~k~~ka~ 170 (269)
T cd07673 145 EQERLKKEGAT-QREIEKAAVKSKKAT 170 (269)
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHH
No 480
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=65.46 E-value=1.2e+02 Score=28.46 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 023255 75 LKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i~~~ 96 (285)
++.+|..++..+..++..+...
T Consensus 79 ~~~~l~~~~a~l~~~~~~l~~~ 100 (331)
T PRK03598 79 YENALMQAKANVSVAQAQLDLM 100 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776666655533
No 481
>PF14182 YgaB: YgaB-like protein
Probab=65.37 E-value=63 Score=25.13 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
++|+.+.|-+++.+-..+..++..+..+.. -..+..+|.++.++|+..+.-
T Consensus 12 tMD~LL~LQsElERCqeIE~eL~~l~~ea~-----l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 12 TMDKLLFLQSELERCQEIEKELKELEREAE-----LHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777665432 233445566666666665544
No 482
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=65.33 E-value=90 Score=26.91 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=7.2
Q ss_pred HHhhhhhhhhhhhh
Q 023255 180 IHKGRAAIECEKKN 193 (285)
Q Consensus 180 l~~~ra~~e~ekk~ 193 (285)
+..++..|+.|+..
T Consensus 116 ~~~a~~~I~~e~~~ 129 (175)
T PRK14472 116 IASAKEEIEQEKRR 129 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555543
No 483
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.26 E-value=61 Score=24.95 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~r 142 (285)
...++.++..+...+..+....
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~ 28 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQL 28 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 484
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.24 E-value=22 Score=26.08 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~ 161 (285)
......++.++.+++.++.++.....+|..+++.+..|-.....
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
No 485
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.06 E-value=2.4e+02 Score=31.64 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
+.+..-+...-..|.+.+.-.+..|..|...+...
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l 214 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKL 214 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333344444444455555555555554444433
No 486
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.89 E-value=73 Score=32.89 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
..+.....+.+.+....+++...+..|+.||.--+.+ ..||..|-.-|=.|...|.+.+-.|+--|
T Consensus 448 ~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 448 KRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444444444444444 45555554444444444444444444433
No 487
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=64.87 E-value=95 Score=27.00 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHH-hhhhhHhH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAAT----HVALKQELSLAEQELRHLSSV-AASVKAER 100 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~----h~~LqqEL~laqhEL~~l~~~-i~~~~ae~ 100 (285)
-+..-+...+..|..-+.+-.+.-.. ....+++|..++.+.+.+... ...+.++.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~ 93 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEF 93 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555544443333322 333344455555555444333 33333333
No 488
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=64.65 E-value=1.8e+02 Score=30.02 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCCCCCCch---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Q 023255 34 RALPPQHSPS---LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEK 110 (285)
Q Consensus 34 Gs~p~~~~~l---~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k 110 (285)
|....+|.|| =..+..+|...+.+.++.....+--..-...+-++|....+=+..-
T Consensus 73 G~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~--------------------- 131 (508)
T PF00901_consen 73 GTGDEPPDPLSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQ--------------------- 131 (508)
T ss_pred cCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 111 SLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 111 ~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
...-+.-..++.-|..-++.+....++=..+++.|.+-|.+ + .-+-..=.+=|+.+|+.+.-++.+||-
T Consensus 132 -------~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~k---E~~~Rt~dE~~mv~~yr~ki~aL~~aIe~ 201 (508)
T PF00901_consen 132 -------EKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQK---ESRERTQDERKMVEEYRQKIDALKNAIEV 201 (508)
T ss_pred -------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh-hhchhhhHHHHHHHHhHHHHHH-HHHHHHHHHHhHHhhHHHHHHhhhcCCCCcc
Q 023255 190 EK-KNRASNHEQREIMEKNIISVAQ-QIERLQAELANAEKRARAAAAAAAVNPSTSY 244 (285)
Q Consensus 190 ek-k~~~e~~eq~q~meknli~ma~-e~ekLrael~n~e~r~~a~~~a~~~~~~~~y 244 (285)
|+ -..-|-++|.=.|--+.+--|. ||+=.=+=+|++=--+||.- ++|
T Consensus 202 Er~~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaRaie--------g~y 250 (508)
T PF00901_consen 202 EREGMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATARAIE--------GAY 250 (508)
T ss_pred HHhhHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHHHHH--------HHH
No 489
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=64.65 E-value=4 Score=39.15 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred ccCceEEEeecCCCcccc
Q 023255 3 IYGNSLHTTLHNHSQFTM 20 (285)
Q Consensus 3 ifG~tlivtf~p~rsvTl 20 (285)
+||.++||+|||..++||
T Consensus 105 v~G~c~Vicf~Pnh~ltL 122 (354)
T KOG2958|consen 105 VKGVCKVICFSPNHNLTL 122 (354)
T ss_pred ecceeEEEEeCCcccccc
No 490
>PRK11020 hypothetical protein; Provisional
Probab=64.50 E-value=68 Score=26.66 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 023255 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI-KQEMIKDLNEI 152 (285)
Q Consensus 74 ~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~-rqeL~aevq~L 152 (285)
.+++||......|..+++.+.....-- - -..+..++.|+..+..+|..+... ..+|+.+-+.|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rg------d----------~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRG------D----------AEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC------C----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 023255 153 N 153 (285)
Q Consensus 153 e 153 (285)
.
T Consensus 66 ~ 66 (118)
T PRK11020 66 M 66 (118)
T ss_pred H
No 491
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.34 E-value=1.2e+02 Score=28.13 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
...+-.++...+.++...+.+..++...+.++..+ ...-|+.+...+....+..+.++..+ .....+
T Consensus 73 ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~---L~~~L~~~a~~~d~~~~~~~~~~~~l----------~~~f~~ 139 (243)
T cd07666 73 LDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE---LADSLKGMASCIDRCCKATDKRMKGL----------SEQLLP 139 (243)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh---hhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
.-.|..-+-..++..-..|..+..+...+...+...++|- ..+..||+.+...+..+..++.-|
T Consensus 140 ~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr---~~~~~ev~~~e~kve~a~~~~k~e 203 (243)
T cd07666 140 VIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR---DLLKEEIEKLEDKVECANNALKAD 203 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=64.33 E-value=98 Score=26.98 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCch----------HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 28 EPPLSTRALPPQHSPS----------LHHLEDRIAIQHSDIQSLL-QDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 28 eG~LsGGs~p~~~~~l----------~n~Lee~L~~q~~EIq~lL-~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
+|.+|.+..|....-. ++.-|++|+.-..++.... ...-++-..+ ..|+-.+.+|..+
T Consensus 10 ~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEet----krLa~ireeLE~l------- 78 (159)
T PF04949_consen 10 SGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEET----KRLAEIREELEVL------- 78 (159)
T ss_pred CCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHhh-------
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hh-hccHHHHHHH
Q 023255 97 KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR---DE-SKDMAAIKAE 172 (285)
Q Consensus 97 ~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~---~d-~qkl~aLkaE 172 (285)
.+++++|+..+|..|.......+-|..-++.-++++.++. ++ ++.-..|-..
T Consensus 79 ------------------------~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~ 134 (159)
T PF04949_consen 79 ------------------------ADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTR 134 (159)
T ss_pred ------------------------ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhh
Q 023255 173 IETERQEIHKGR 184 (285)
Q Consensus 173 Ie~LrqEl~~~r 184 (285)
+-.|=.|-.++|
T Consensus 135 L~eLv~eSE~~r 146 (159)
T PF04949_consen 135 LMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHH
No 493
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.90 E-value=26 Score=25.68 Aligned_cols=43 Identities=12% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAI 169 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aL 169 (285)
.+.+++.++..+.....++..+...|++++..+++|..-+..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
No 494
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=63.72 E-value=65 Score=28.98 Aligned_cols=130 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred ccCceEEEeecCCCcccccCCccCCCCCCCCCCCCCCCCch---------------HHHHHHHHHHHHHHHHHHHHHhHH
Q 023255 3 IYGNSLHTTLHNHSQFTMSGRRVLREPPLSTRALPPQHSPS---------------LHHLEDRIAIQHSDIQSLLQDNQR 67 (285)
Q Consensus 3 ifG~tlivtf~p~rsvTleGD~ydpeG~LsGGs~p~~~~~l---------------~n~Lee~L~~q~~EIq~lL~dnqr 67 (285)
++|.-+|||||++++-.++-=+..-. .++..+.++.-+ ...+++++...+.++ .-.....
T Consensus 74 ~~~~~~lit~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~--~~~~~~~ 148 (292)
T PF01544_consen 74 ILGDNFLITVHRDPLPFIDELRERLE---SRNERPSSPEDLLYAILDEIVDDYFEVLEELEDELDELEDEL--DDRPSNE 148 (292)
T ss_dssp EEETTEEEEEESSSSHCHHHHHHHHH---STTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THTTTHH
T ss_pred EEecceEEEEECCCChHHHHHHHHhh---ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---------hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 68 LAATHVALKQELSLAEQELRHLSSVAASVKA---------ERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKL 138 (285)
Q Consensus 68 la~~h~~LqqEL~laqhEL~~l~~~i~~~~a---------e~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l 138 (285)
.......++++|...+.-+......+...-. +....++++ ....+.+.+.+..++..+..+
T Consensus 149 ~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l 218 (292)
T PF01544_consen 149 LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDL----------LDRIERLLERAESLRERLESL 218 (292)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 023255 139 CVIKQEMIK 147 (285)
Q Consensus 139 ~~~rqeL~a 147 (285)
........+
T Consensus 219 ~~~~~~~~~ 227 (292)
T PF01544_consen 219 QDLYQSKLS 227 (292)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
No 495
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=63.67 E-value=3.7 Score=33.37 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI-KQ 143 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~-rq 143 (285)
...++.++..|.++....+.++..|...+...+... ..++..|..++....++... ..
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~---------------------~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEE---------------------ESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---------------------HHHHHhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 144 EMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+...-+..-.++-.+.-.+ ..++..+..+++.|+.+....++-|
T Consensus 86 eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 86 EAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 496
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.51 E-value=77 Score=25.48 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 46 HLEDRIAIQHS--DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 46 ~Lee~L~~q~~--EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
.|+.+...... .|...-.+.++.-.....=..+|...+..|..-.......-.+.+.....- ++..+.
T Consensus 2 li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA----------~k~a~~ 71 (126)
T PF13863_consen 2 LIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERA----------EKRAEE 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
-.....+...+|..|......|..++..++..+.++.
T Consensus 72 e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 72 EKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=63.40 E-value=88 Score=26.10 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~r 142 (285)
.+.+.|...+..+.. +...-..++.+...+.....+. +.+.+++..++.+ ++.+|.++.....+++.+....
T Consensus 7 ~eL~~Ll~d~~~l~~-~v~~l~~~~~~~~~~~~l~~~n----~~lAe~nL~~~~~---l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 7 EELQELLSDEEKLDA-FVKSLPQVQELQQEREELLAEN----EELAEQNLSLEPE---LEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp HHHHHHHHH-HHHHH-HGGGGS--HHHHHHHHHHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHH-HHHcCHHHHHHHHHHHHHHHHH----HHHHHHhcccchH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHH
Q 023255 143 QEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 143 qeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl 180 (285)
.++..+.+.+ ...|+.+ -.+|...-.+.+....++
T Consensus 79 ~~k~~~~~~l---~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 79 QEKEQQQDEL---SSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=63.15 E-value=1e+02 Score=26.84 Aligned_cols=125 Identities=15% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
+..+..+|.....++...+..-..|.......++.|.....+.+. .+|..||+.|+++..+-..+....+
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~----------ysE~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR----------YSEEDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------cCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQ 178 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~Lrq 178 (285)
-...|..-|.+++.-....++.......|...+.-.-+= .+.+..+-..|+.+++
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 499
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=63.04 E-value=82 Score=30.43 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhh
Q 023255 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ 183 (285)
...+.+|..+++.+.....-+.....-++.......+...-++++..-+-....+ ......+..||+.|+.||.+.
T Consensus 46 ~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~i 124 (360)
T COG1344 46 LAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNI 124 (360)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
No 500
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=62.97 E-value=1.1e+02 Score=27.26 Aligned_cols=141 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhhhHhHHHHHHHHHHHhhh
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS----------SVAASVKAERDAEVRELYEKSLK 113 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~----------~~i~~~~ae~e~~~r~L~~k~~k 113 (285)
...|+..|...+.-+..+...-+.++..+ .++..+-..|..++ .-......-++.+-|.-.+-..+
T Consensus 13 i~~Le~~Lk~l~~~~~~l~~~r~ela~~~----~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~ 88 (216)
T cd07627 13 LDSLESQLKQLYKSLELVSSQRKELASAT----EEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLT 88 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD----ESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~----d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
|...|+..-.+-.-+..+=..-.++...-+.+...+.+....+.++.. ...|+..++.||+.+......++..|+
T Consensus 89 l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 89 LGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!