Query 023255
Match_columns 285
No_of_seqs 148 out of 164
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.7 0.0039 1.3E-07 56.1 19.3 104 50-157 19-128 (256)
2 2dfs_A Myosin-5A; myosin-V, in 97.6 0.0016 5.5E-08 69.8 17.6 123 65-187 923-1046(1080)
3 1gxl_A SMC, chromosome segrega 97.5 2.9E-05 9.9E-10 66.8 1.8 53 2-56 140-204 (213)
4 1i84_S Smooth muscle myosin he 97.5 0.00045 1.6E-08 74.5 11.2 10 47-56 862-871 (1184)
5 2wd5_B Structural maintenance 97.4 2.3E-05 8E-10 68.0 0.5 42 2-43 142-193 (213)
6 3na7_A HP0958; flagellar bioge 97.3 0.055 1.9E-06 48.6 20.6 41 59-99 14-54 (256)
7 3ol1_A Vimentin; structural ge 97.1 0.011 3.9E-07 47.6 13.3 99 44-170 15-114 (119)
8 2dfs_A Myosin-5A; myosin-V, in 96.9 0.022 7.5E-07 61.1 16.6 85 107-191 958-1043(1080)
9 3o0z_A RHO-associated protein 96.8 0.19 6.4E-06 43.0 19.3 44 123-166 73-116 (168)
10 2v71_A Nuclear distribution pr 96.7 0.15 5.2E-06 44.3 17.4 38 123-160 99-136 (189)
11 3ghg_A Fibrinogen alpha chain; 96.3 0.034 1.2E-06 55.0 12.2 78 94-188 77-155 (562)
12 3oja_B Anopheles plasmodium-re 96.3 0.037 1.3E-06 54.3 12.5 20 173-192 539-558 (597)
13 3vkg_A Dynein heavy chain, cyt 96.2 0.69 2.4E-05 54.8 24.2 32 195-226 2038-2069(3245)
14 3vkg_A Dynein heavy chain, cyt 96.2 0.81 2.8E-05 54.2 24.6 57 164-220 2028-2084(3245)
15 3oja_B Anopheles plasmodium-re 96.1 0.091 3.1E-06 51.5 14.1 57 170-226 522-578 (597)
16 3swk_A Vimentin; cytoskeleton, 95.9 0.15 5.1E-06 38.9 11.5 79 74-159 4-82 (86)
17 3ol1_A Vimentin; structural ge 95.9 0.3 1E-05 39.2 13.9 71 113-189 38-108 (119)
18 2wd5_A Structural maintenance 95.5 0.0014 4.8E-08 57.9 -1.3 34 2-35 151-196 (233)
19 2ocy_A RAB guanine nucleotide 95.5 0.55 1.9E-05 39.6 14.6 81 70-161 13-93 (154)
20 3swk_A Vimentin; cytoskeleton, 95.3 0.092 3.1E-06 40.0 8.4 81 86-183 2-82 (86)
21 2v71_A Nuclear distribution pr 95.0 1.6 5.5E-05 37.9 18.5 11 78-88 25-35 (189)
22 3mq7_A Bone marrow stromal ant 95.0 0.44 1.5E-05 38.4 11.7 70 124-193 30-100 (121)
23 2w83_C C-JUN-amino-terminal ki 94.9 0.2 6.9E-06 37.4 8.9 68 56-158 9-76 (77)
24 2no2_A HIP-I, huntingtin-inter 94.8 0.85 2.9E-05 36.0 13.0 84 118-201 7-91 (107)
25 3mq9_A Bone marrow stromal ant 94.8 0.91 3.1E-05 43.3 15.8 29 163-191 442-470 (471)
26 3hnw_A Uncharacterized protein 94.7 0.97 3.3E-05 37.2 13.8 15 16-30 10-24 (138)
27 2fxo_A Myosin heavy chain, car 94.7 1.3 4.6E-05 35.6 16.1 97 121-217 15-122 (129)
28 3mq9_A Bone marrow stromal ant 94.4 0.55 1.9E-05 44.8 13.3 73 144-222 394-466 (471)
29 2v4h_A NF-kappa-B essential mo 94.0 1.2 4E-05 35.5 12.0 47 116-162 59-105 (110)
30 1deq_A Fibrinogen (alpha chain 93.8 1.3 4.5E-05 42.2 14.1 46 142-190 115-160 (390)
31 3tnu_B Keratin, type II cytosk 93.7 1.2 4.3E-05 35.8 12.1 77 123-199 33-110 (129)
32 3ghg_A Fibrinogen alpha chain; 93.5 0.74 2.5E-05 45.6 12.3 94 122-222 60-154 (562)
33 2v4h_A NF-kappa-B essential mo 93.5 0.57 1.9E-05 37.3 9.4 84 121-218 26-109 (110)
34 2eqb_B RAB guanine nucleotide 93.4 1.1 3.8E-05 34.9 10.9 33 126-158 5-37 (97)
35 2fxo_A Myosin heavy chain, car 93.1 2.8 9.6E-05 33.7 18.1 32 127-158 91-122 (129)
36 3mq7_A Bone marrow stromal ant 93.1 2.8 9.7E-05 33.6 14.6 26 70-95 25-50 (121)
37 3iox_A AGI/II, PA; alpha helix 93.1 2.8 9.6E-05 41.2 15.5 101 73-182 5-105 (497)
38 3hhm_B NISH2 P85alpha; PI3KCA, 93.0 2.9 0.0001 39.6 15.4 130 45-185 122-254 (373)
39 3tnu_A Keratin, type I cytoske 92.9 3 0.0001 33.6 13.5 16 143-158 87-102 (131)
40 3tnu_B Keratin, type II cytosk 92.9 3 0.0001 33.4 14.2 14 145-158 87-100 (129)
41 3tnu_A Keratin, type I cytoske 92.8 1.1 3.9E-05 36.1 10.6 77 123-199 35-112 (131)
42 1wt6_A Myotonin-protein kinase 92.8 0.71 2.4E-05 34.8 8.5 48 114-161 19-73 (81)
43 3i00_A HIP-I, huntingtin-inter 92.4 0.49 1.7E-05 38.2 7.8 51 97-160 10-60 (120)
44 1x79_B RAB GTPase binding effe 92.2 1.6 5.6E-05 34.8 10.5 93 121-223 8-101 (112)
45 3jsv_C NF-kappa-B essential mo 92.1 2.2 7.5E-05 33.0 10.7 84 74-168 6-89 (94)
46 2xnx_M M protein, M1-BC1; cell 91.8 1.2 4.2E-05 37.0 9.6 63 122-187 69-131 (146)
47 2jee_A YIIU; FTSZ, septum, coi 91.7 1.5 5.3E-05 33.0 9.3 56 103-161 14-69 (81)
48 3u1c_A Tropomyosin alpha-1 cha 91.5 3.9 0.00013 31.6 12.2 28 165-192 52-79 (101)
49 1l8d_A DNA double-strand break 91.3 0.9 3.1E-05 35.2 8.1 43 120-162 4-46 (112)
50 3jsv_C NF-kappa-B essential mo 90.4 1.3 4.4E-05 34.4 7.9 51 171-221 40-90 (94)
51 1m1j_B Fibrinogen beta chain; 90.4 8.8 0.0003 37.5 15.8 68 121-188 123-192 (464)
52 3i00_A HIP-I, huntingtin-inter 90.1 3.6 0.00012 33.1 10.7 38 121-158 42-79 (120)
53 4gkw_A Spindle assembly abnorm 89.9 7.3 0.00025 32.1 19.7 101 71-185 61-161 (167)
54 1go4_E MAD1 (mitotic arrest de 89.9 1.7 5.8E-05 34.1 8.3 61 127-187 13-91 (100)
55 2efk_A CDC42-interacting prote 89.4 11 0.00037 33.3 20.0 19 195-213 208-226 (301)
56 1deq_A Fibrinogen (alpha chain 89.2 6.8 0.00023 37.3 13.5 39 184-222 119-157 (390)
57 3okq_A BUD site selection prot 88.8 2.1 7.2E-05 35.5 8.5 67 130-196 18-86 (141)
58 3a7p_A Autophagy protein 16; c 88.8 5.1 0.00017 33.6 11.0 77 136-221 71-147 (152)
59 2w6b_A RHO guanine nucleotide 88.8 0.91 3.1E-05 31.8 5.3 39 166-204 12-50 (56)
60 3lay_A Zinc resistance-associa 88.8 2.4 8.3E-05 36.2 9.3 27 161-187 110-136 (175)
61 3s4r_A Vimentin; alpha-helix, 88.7 3.5 0.00012 31.6 9.3 34 125-158 55-88 (93)
62 2jee_A YIIU; FTSZ, septum, coi 88.3 4.1 0.00014 30.7 9.2 66 167-232 9-74 (81)
63 1ic2_A Tropomyosin alpha chain 88.3 4.1 0.00014 30.1 9.3 29 164-192 48-76 (81)
64 2lw1_A ABC transporter ATP-bin 88.2 2.3 7.9E-05 32.0 7.9 54 135-188 24-80 (89)
65 1gk4_A Vimentin; intermediate 88.1 6.7 0.00023 29.2 12.0 24 124-147 38-61 (84)
66 1ez3_A Syntaxin-1A; three heli 88.0 8 0.00027 30.1 11.5 65 118-182 11-79 (127)
67 3hnw_A Uncharacterized protein 88.0 7.9 0.00027 31.7 11.6 18 65-82 50-67 (138)
68 1m1j_C Fibrinogen gamma chain; 87.9 10 0.00035 36.4 14.0 43 47-89 25-67 (409)
69 2pih_A Protein YMCA; regulate 87.7 4.9 0.00017 33.2 10.3 104 104-221 6-111 (151)
70 3oja_A Leucine-rich immune mol 87.5 16 0.00055 34.7 15.3 31 172-202 450-480 (487)
71 3bas_A Myosin heavy chain, str 87.3 6.3 0.00022 29.7 9.9 48 112-162 10-57 (89)
72 3q8t_A Beclin-1; autophagy, AT 87.3 8.4 0.00029 29.6 13.0 26 165-190 68-93 (96)
73 1x79_B RAB GTPase binding effe 86.7 10 0.00036 30.1 12.7 45 73-117 16-60 (112)
74 1m1j_A Fibrinogen alpha subuni 86.7 23 0.00078 34.6 15.6 27 163-189 131-157 (491)
75 1wt6_A Myotonin-protein kinase 86.5 4.9 0.00017 30.2 8.6 20 164-183 52-71 (81)
76 2ocy_A RAB guanine nucleotide 86.5 11 0.00038 31.6 11.8 12 215-226 117-128 (154)
77 4ad8_A DNA repair protein RECN 86.3 22 0.00076 34.2 15.8 17 166-182 287-303 (517)
78 3haj_A Human pacsin2 F-BAR; pa 86.2 25 0.00085 33.8 19.6 48 165-213 186-245 (486)
79 1t3j_A Mitofusin 1; coiled coi 85.7 2.6 8.9E-05 32.8 7.0 62 125-186 31-93 (96)
80 3l4q_C Phosphatidylinositol 3- 85.6 16 0.00054 31.1 15.9 53 44-96 12-64 (170)
81 4gkw_A Spindle assembly abnorm 85.4 14 0.00049 30.4 19.2 131 70-228 18-155 (167)
82 1x8y_A Lamin A/C; structural p 84.4 7.1 0.00024 29.3 8.9 8 128-135 44-51 (86)
83 3o0z_A RHO-associated protein 83.9 19 0.00065 30.6 20.2 43 101-146 47-89 (168)
84 2eqb_B RAB guanine nucleotide 83.5 14 0.00047 28.7 11.1 38 123-160 23-60 (97)
85 3oja_A Leucine-rich immune mol 83.3 23 0.00078 33.6 14.1 12 174-185 459-470 (487)
86 1m1j_C Fibrinogen gamma chain; 83.2 13 0.00045 35.6 12.3 99 114-228 36-134 (409)
87 3nmd_A CGMP dependent protein 82.1 7.1 0.00024 28.8 7.7 32 128-159 35-66 (72)
88 2pms_C Pneumococcal surface pr 81.6 11 0.00037 30.6 9.3 69 155-224 52-121 (125)
89 3m91_A Proteasome-associated A 80.9 7.5 0.00026 26.7 7.0 42 48-89 8-49 (51)
90 2w6a_A ARF GTPase-activating p 79.9 9.8 0.00034 27.0 7.4 47 120-166 14-60 (63)
91 1joc_A EEA1, early endosomal a 79.4 11 0.00038 30.0 8.8 42 104-148 6-47 (125)
92 2efr_A General control protein 79.3 26 0.0009 29.2 22.2 78 131-211 61-138 (155)
93 2e7s_A RAB guanine nucleotide 79.0 3.1 0.00011 34.2 5.4 8 72-79 34-41 (135)
94 3t98_B Nucleoporin NUP58/NUP45 78.7 15 0.00051 28.2 8.9 67 121-187 14-88 (93)
95 3u59_A Tropomyosin beta chain; 78.4 20 0.00069 27.4 13.2 24 167-190 54-77 (101)
96 1wle_A Seryl-tRNA synthetase; 78.2 22 0.00075 34.9 12.2 32 122-153 73-104 (501)
97 3htk_A Structural maintenance 77.4 10 0.00035 26.0 7.1 24 166-189 35-58 (60)
98 3nmd_A CGMP dependent protein 77.3 13 0.00044 27.4 7.7 19 169-187 52-70 (72)
99 1s94_A S-syntaxin; three helix 77.2 9.4 0.00032 31.8 8.1 17 202-218 129-145 (180)
100 2ke4_A CDC42-interacting prote 76.9 3.7 0.00013 31.8 5.0 22 205-226 61-82 (98)
101 3a7p_A Autophagy protein 16; c 76.9 31 0.0011 28.7 11.7 30 119-148 96-125 (152)
102 2dq0_A Seryl-tRNA synthetase; 76.9 11 0.00039 36.3 9.7 54 121-181 33-86 (455)
103 2d1l_A Metastasis suppressor p 76.7 42 0.0014 30.1 15.6 43 180-222 188-230 (253)
104 3qne_A Seryl-tRNA synthetase, 76.5 6.9 0.00023 38.4 8.0 56 118-180 32-87 (485)
105 1jcd_A Major outer membrane li 76.1 13 0.00045 25.6 7.1 43 135-187 6-48 (52)
106 2dq0_A Seryl-tRNA synthetase; 76.1 5.6 0.00019 38.6 7.2 9 198-206 160-168 (455)
107 2qyw_A Vesicle transport throu 75.7 17 0.00057 28.0 8.5 24 70-93 15-38 (102)
108 2b9c_A Striated-muscle alpha t 75.6 26 0.0009 28.8 10.2 69 119-187 52-124 (147)
109 2v0o_A FCHO2, FCH domain only 75.5 39 0.0013 29.1 14.7 31 59-89 31-61 (276)
110 2ke4_A CDC42-interacting prote 75.4 13 0.00043 28.8 7.7 25 122-146 18-42 (98)
111 2zqm_A Prefoldin beta subunit 75.1 25 0.00086 26.8 13.3 38 121-158 72-109 (117)
112 2iub_A CORA, divalent cation t 75.0 26 0.0009 32.3 11.3 13 241-253 320-333 (363)
113 1go4_E MAD1 (mitotic arrest de 74.8 5.3 0.00018 31.2 5.4 65 120-184 13-95 (100)
114 3u1c_A Tropomyosin alpha-1 cha 74.6 27 0.00091 26.8 14.9 57 126-182 37-97 (101)
115 1ykh_B RNA polymerase II holoe 74.0 24 0.00084 28.4 9.5 72 67-152 54-125 (132)
116 3qne_A Seryl-tRNA synthetase, 74.0 15 0.00051 36.1 9.6 27 196-222 75-101 (485)
117 3s9g_A Protein hexim1; cyclin 74.0 11 0.00039 29.3 7.0 23 163-185 64-86 (104)
118 3lay_A Zinc resistance-associa 73.9 22 0.00074 30.2 9.5 20 170-189 112-131 (175)
119 2e7s_A RAB guanine nucleotide 73.9 3.3 0.00011 34.1 4.2 11 210-220 71-81 (135)
120 1m1j_B Fibrinogen beta chain; 73.5 70 0.0024 31.2 15.4 25 163-187 134-158 (464)
121 4e61_A Protein BIM1; EB1-like 73.4 25 0.00084 27.7 9.0 40 118-157 3-42 (106)
122 3q8t_A Beclin-1; autophagy, AT 73.2 29 0.00098 26.5 12.3 20 200-219 75-94 (96)
123 4ev6_A Magnesium transport pro 72.8 35 0.0012 31.0 11.5 13 241-253 296-309 (339)
124 1jcd_A Major outer membrane li 72.5 11 0.00038 25.9 6.0 32 128-159 6-37 (52)
125 3plt_A Sphingolipid long chain 72.2 53 0.0018 29.2 20.3 62 127-192 98-159 (234)
126 1fxk_C Protein (prefoldin); ar 71.9 24 0.00082 27.8 8.9 27 200-226 96-122 (133)
127 2i1j_A Moesin; FERM, coiled-co 71.8 2.7 9.3E-05 41.9 3.9 106 121-226 337-446 (575)
128 1vcs_A Vesicle transport throu 71.6 14 0.00047 28.4 7.2 23 163-185 73-95 (102)
129 2iaz_A Hypothetical protein SP 71.4 13 0.00045 28.5 7.1 84 104-189 2-86 (113)
130 4fla_A Regulation of nuclear P 71.1 43 0.0015 27.7 11.6 58 121-178 88-145 (152)
131 2yy0_A C-MYC-binding protein; 71.1 7.8 0.00027 26.7 5.0 29 121-149 21-49 (53)
132 2oeq_A Protein of unknown func 71.1 12 0.0004 29.5 6.8 99 106-218 7-106 (122)
133 3pwx_A Putative flagellar HOOK 71.0 44 0.0015 29.2 11.2 78 109-186 11-91 (239)
134 1ik9_A DNA repair protein XRCC 70.9 52 0.0018 28.6 12.1 68 104-177 123-195 (213)
135 1yke_B RNA polymerase II holoe 70.8 30 0.001 28.6 9.5 78 67-158 54-131 (151)
136 4dyl_A Tyrosine-protein kinase 70.7 70 0.0024 29.9 17.3 23 196-218 208-230 (406)
137 2w6a_A ARF GTPase-activating p 70.6 26 0.00087 24.9 8.7 46 44-89 15-60 (63)
138 2dq3_A Seryl-tRNA synthetase; 70.2 4.8 0.00016 38.6 5.1 70 118-187 29-98 (425)
139 3ni0_A Bone marrow stromal ant 70.1 36 0.0012 26.3 11.2 24 163-186 66-89 (99)
140 3ghg_C Fibrinogen gamma chain; 70.0 54 0.0018 31.5 12.3 21 46-66 24-44 (411)
141 2oto_A M protein; helical coil 68.3 47 0.0016 27.0 17.4 38 136-173 117-154 (155)
142 1d7m_A Cortexillin I; coiled-c 68.0 39 0.0013 25.9 10.6 76 127-209 5-84 (101)
143 4dci_A Uncharacterized protein 68.0 30 0.001 28.7 8.9 72 131-203 34-105 (150)
144 3l4f_A RHO guanine nucleotide 67.6 12 0.0004 26.7 5.3 41 167-214 10-50 (61)
145 3c9i_A Tail needle protein GP2 67.5 65 0.0022 28.3 14.1 86 65-162 63-148 (242)
146 1ses_A Seryl-tRNA synthetase; 67.2 17 0.0006 34.6 8.3 31 120-150 29-59 (421)
147 1ci6_A Transcription factor AT 66.8 30 0.001 24.3 7.8 35 122-156 19-53 (63)
148 3ra3_A P1C; coiled coil domain 66.7 2.9 0.0001 24.7 1.7 21 158-178 6-28 (28)
149 3a7o_A Autophagy protein 16; c 66.5 36 0.0012 25.0 8.5 32 63-94 11-42 (75)
150 1fxk_A Prefoldin; archaeal pro 66.4 38 0.0013 25.3 12.3 30 122-151 68-97 (107)
151 2pms_C Pneumococcal surface pr 66.2 51 0.0017 26.6 10.5 105 73-186 9-118 (125)
152 1wle_A Seryl-tRNA synthetase; 66.2 30 0.001 33.9 9.9 8 198-205 186-193 (501)
153 1gu4_A CAAT/enhancer binding p 66.2 33 0.0011 25.3 7.9 48 119-166 29-76 (78)
154 1cii_A Colicin IA; bacteriocin 66.0 1.1E+02 0.0036 30.2 13.9 72 117-191 347-418 (602)
155 3cl3_D NF-kappa-B essential mo 66.0 5.3 0.00018 32.5 3.7 64 131-194 21-85 (130)
156 2bsg_A Fibritin; viral protein 65.9 39 0.0013 33.2 10.4 102 121-222 96-221 (487)
157 3fpp_A Macrolide-specific effl 65.7 20 0.00068 32.1 8.1 13 214-226 136-148 (341)
158 2efl_A Formin-binding protein 65.1 70 0.0024 27.8 21.8 22 194-215 214-235 (305)
159 2odv_A Plectin 1, HD1; plakin 65.0 72 0.0025 28.0 13.5 127 34-184 85-224 (235)
160 2ve7_A Kinetochore protein HEC 64.9 10 0.00036 34.8 6.1 46 160-208 181-226 (315)
161 3lss_A Seryl-tRNA synthetase; 64.8 40 0.0014 33.0 10.4 36 119-154 37-72 (484)
162 3vp9_A General transcriptional 64.7 11 0.00036 29.1 5.0 45 75-136 41-85 (92)
163 3ghg_B Fibrinogen beta chain; 64.3 1.1E+02 0.0037 29.8 13.5 10 47-56 82-91 (461)
164 3ibp_A Chromosome partition pr 64.1 61 0.0021 29.9 10.9 36 136-171 79-115 (302)
165 1ez3_A Syntaxin-1A; three heli 63.9 24 0.00081 27.3 7.2 34 122-158 46-79 (127)
166 3cve_A Homer protein homolog 1 63.3 35 0.0012 24.9 7.4 32 121-152 16-47 (72)
167 2qyw_A Vesicle transport throu 63.1 48 0.0017 25.3 10.9 20 44-63 17-36 (102)
168 1hjb_A Ccaat/enhancer binding 63.0 36 0.0012 25.7 7.7 32 129-160 39-70 (87)
169 2fcw_A Alpha-2-macroglobulin r 63.0 54 0.0019 25.8 10.7 76 148-225 25-100 (109)
170 3onj_A T-snare VTI1; helix, HA 62.7 47 0.0016 25.1 12.2 21 163-183 71-92 (97)
171 2d4x_A Flagellar HOOK-associat 62.6 53 0.0018 28.4 10.0 77 110-186 10-89 (248)
172 3k8w_A Flagellin homolog; flag 62.3 70 0.0024 29.8 11.1 79 108-186 28-109 (326)
173 2xzr_A Immunoglobulin-binding 61.9 54 0.0019 25.5 16.4 47 104-150 54-100 (114)
174 3m9b_A Proteasome-associated A 61.6 11 0.00036 34.1 5.3 43 48-90 53-95 (251)
175 3u59_A Tropomyosin beta chain; 61.0 52 0.0018 25.0 14.8 14 168-181 83-96 (101)
176 4dzn_A Coiled-coil peptide CC- 60.9 12 0.00041 22.8 3.7 17 166-182 4-20 (33)
177 3a7o_A Autophagy protein 16; c 60.8 46 0.0016 24.3 8.1 55 44-98 20-74 (75)
178 3s4r_A Vimentin; alpha-helix, 60.7 52 0.0018 24.9 12.7 10 108-117 22-31 (93)
179 3s9g_A Protein hexim1; cyclin 60.6 39 0.0014 26.3 7.6 40 126-165 44-83 (104)
180 1kd8_A GABH AIV, GCN4 acid bas 60.6 23 0.00079 22.5 5.1 30 129-158 4-33 (36)
181 2yy0_A C-MYC-binding protein; 60.5 16 0.00053 25.1 4.8 31 126-156 19-49 (53)
182 3sja_C Golgi to ER traffic pro 60.2 24 0.00082 25.4 5.9 49 142-190 8-58 (65)
183 2q6q_A Spindle POLE BODY compo 59.9 47 0.0016 24.2 7.4 30 70-99 3-32 (74)
184 4etp_A Kinesin-like protein KA 59.7 22 0.00074 33.8 7.4 26 133-158 10-35 (403)
185 2y3a_B Phosphatidylinositol 3- 58.6 43 0.0015 30.7 8.9 128 47-185 16-146 (302)
186 2x3v_A Syndapin I, protein kin 58.2 1E+02 0.0035 27.5 19.0 49 166-215 185-245 (337)
187 4dk0_A Putative MACA; alpha-ha 58.0 38 0.0013 30.5 8.5 14 76-89 90-103 (369)
188 2nrj_A HBL B protein; enteroto 57.8 1.2E+02 0.004 28.1 14.8 20 162-181 174-193 (346)
189 1fxk_A Prefoldin; archaeal pro 57.8 56 0.0019 24.3 10.3 8 170-177 71-78 (107)
190 3qh9_A Liprin-beta-2; coiled-c 57.8 57 0.0019 24.4 10.1 60 118-180 18-77 (81)
191 1t2k_D Cyclic-AMP-dependent tr 57.6 44 0.0015 23.0 7.8 26 129-154 25-50 (61)
192 2a3d_A Protein (de novo three- 57.5 28 0.00097 24.6 5.8 40 145-184 31-71 (73)
193 3bas_A Myosin heavy chain, str 57.4 57 0.0019 24.3 10.9 20 134-153 64-83 (89)
194 3l4q_C Phosphatidylinositol 3- 57.4 88 0.003 26.4 13.0 43 57-99 18-60 (170)
195 3mov_A Lamin-B1; LMNB1, B-type 57.2 32 0.0011 26.2 6.7 23 85-107 20-42 (95)
196 3kqg_A Langerin, C-type lectin 56.9 8.4 0.00029 31.4 3.5 34 145-178 4-37 (182)
197 2oee_A UPF0342 protein YHEA; M 56.8 15 0.00051 28.4 4.8 82 106-189 4-86 (117)
198 3r6n_A Desmoplakin; spectrin r 56.2 1.4E+02 0.0049 28.6 21.0 102 44-146 44-160 (450)
199 2efk_A CDC42-interacting prote 56.1 1E+02 0.0035 26.8 19.7 20 139-158 108-127 (301)
200 1vcs_A Vesicle transport throu 55.9 65 0.0022 24.5 8.9 22 45-66 8-29 (102)
201 3cvf_A Homer-3, homer protein 55.9 32 0.0011 25.6 6.2 30 121-150 22-51 (79)
202 3tul_A Cell invasion protein S 55.7 88 0.003 26.0 10.9 53 135-187 71-123 (158)
203 2xdj_A Uncharacterized protein 55.6 61 0.0021 24.1 8.5 39 119-157 27-65 (83)
204 2v0o_A FCHO2, FCH domain only 55.4 99 0.0034 26.5 18.9 21 193-213 196-216 (276)
205 1m1j_A Fibrinogen alpha subuni 54.8 1.6E+02 0.0055 28.7 15.4 37 121-157 120-156 (491)
206 2xnx_M M protein, M1-BC1; cell 54.5 91 0.0031 25.8 10.1 9 150-158 69-77 (146)
207 2v66_B Nuclear distribution pr 54.4 78 0.0027 24.9 13.9 49 101-162 2-50 (111)
208 2zqm_A Prefoldin beta subunit 54.4 67 0.0023 24.2 11.7 12 211-222 96-107 (117)
209 1cii_A Colicin IA; bacteriocin 53.7 1.7E+02 0.0059 28.7 17.2 32 202-233 504-545 (602)
210 1g6u_A Domain swapped dimer; d 53.6 26 0.00089 23.0 4.7 18 200-217 28-45 (48)
211 3ajw_A Flagellar FLIJ protein; 53.6 78 0.0027 24.7 11.5 42 165-206 75-116 (150)
212 1s94_A S-syntaxin; three helix 53.5 93 0.0032 25.5 11.6 79 123-206 78-166 (180)
213 3ghg_B Fibrinogen beta chain; 53.2 1.5E+02 0.0051 28.9 12.1 18 208-225 172-189 (461)
214 3ni0_A Bone marrow stromal ant 52.8 77 0.0026 24.4 12.6 69 71-160 19-87 (99)
215 3trt_A Vimentin; cytoskeleton, 52.5 60 0.0021 23.1 9.1 23 166-188 51-73 (77)
216 3hhm_B NISH2 P85alpha; PI3KCA, 52.2 1.5E+02 0.0053 27.7 15.4 48 46-93 130-177 (373)
217 2akf_A Coronin-1A; coiled coil 51.8 34 0.0012 20.9 4.7 25 131-155 4-28 (32)
218 3cl3_D NF-kappa-B essential mo 51.5 5.3 0.00018 32.5 1.3 73 123-195 6-79 (130)
219 1uix_A RHO-associated kinase; 51.5 68 0.0023 23.4 8.2 29 132-160 3-31 (71)
220 3ryc_E Stathmin-4; alpha-tubul 50.9 1E+02 0.0035 25.3 13.3 16 40-55 41-56 (143)
221 4emc_A Monopolin complex subun 50.7 53 0.0018 28.3 7.6 49 46-94 10-58 (190)
222 1x8y_A Lamin A/C; structural p 50.5 41 0.0014 25.0 6.2 15 144-158 39-53 (86)
223 3v47_C Flagellin; innate immun 50.2 47 0.0016 32.0 8.0 79 110-188 9-90 (425)
224 1hjb_A Ccaat/enhancer binding 49.9 69 0.0024 24.1 7.3 22 121-142 52-73 (87)
225 1jnm_A Proto-oncogene C-JUN; B 49.7 61 0.0021 22.4 7.0 30 127-156 23-52 (62)
226 2lf0_A Uncharacterized protein 49.7 50 0.0017 26.5 6.8 31 160-190 32-62 (123)
227 2l5g_B Putative uncharacterize 49.3 48 0.0016 21.8 5.5 30 118-147 8-37 (42)
228 3viq_A SWI5-dependent recombin 49.1 19 0.00065 28.9 4.3 37 164-200 7-43 (122)
229 2p22_C Protein SRN2; endosome, 48.9 1.3E+02 0.0043 25.8 11.3 16 207-222 159-174 (192)
230 3iox_A AGI/II, PA; alpha helix 48.8 2E+02 0.007 28.2 15.8 25 48-72 8-32 (497)
231 3m9b_A Proteasome-associated A 48.6 25 0.00086 31.6 5.4 34 125-158 60-93 (251)
232 2wq1_A General control protein 48.2 33 0.0011 21.4 4.3 26 129-154 3-28 (33)
233 1oxz_A ADP-ribosylation factor 48.0 1.2E+02 0.0043 25.7 9.6 36 191-226 106-144 (186)
234 4etp_A Kinesin-like protein KA 47.8 51 0.0017 31.2 7.8 27 127-153 11-37 (403)
235 4dk0_A Putative MACA; alpha-ha 47.6 30 0.001 31.2 6.0 32 127-158 71-102 (369)
236 3fpp_A Macrolide-specific effl 47.5 64 0.0022 28.7 8.2 21 168-188 132-152 (341)
237 3htk_A Structural maintenance 47.3 63 0.0021 21.8 7.6 21 133-153 26-46 (60)
238 1ucu_A Phase 1 flagellin; flag 47.3 1.4E+02 0.0048 28.9 11.1 109 75-186 13-128 (494)
239 3cvf_A Homer-3, homer protein 47.1 85 0.0029 23.3 9.4 17 84-100 27-43 (79)
240 3csx_A Putative uncharacterize 47.1 78 0.0027 23.6 7.1 59 126-187 15-73 (81)
241 3lss_A Seryl-tRNA synthetase; 46.8 82 0.0028 30.7 9.3 30 127-156 38-67 (484)
242 3m91_A Proteasome-associated A 46.6 66 0.0023 21.9 7.0 32 125-156 15-46 (51)
243 2no2_A HIP-I, huntingtin-inter 46.5 1E+02 0.0034 23.9 15.9 29 112-140 47-75 (107)
244 2xhe_B Syntaxin1; exocytosis, 46.3 1.5E+02 0.0052 26.0 12.7 66 118-183 47-118 (279)
245 1l8d_A DNA double-strand break 45.9 94 0.0032 23.4 12.5 37 121-157 66-102 (112)
246 2js5_A Uncharacterized protein 45.8 85 0.0029 22.9 7.2 56 127-185 4-59 (71)
247 3m48_A General control protein 45.7 38 0.0013 21.2 4.3 24 130-153 4-27 (33)
248 1fmh_A General control protein 45.6 39 0.0013 20.5 4.2 9 145-153 20-28 (33)
249 2j69_A Bacterial dynamin-like 45.3 2E+02 0.0069 28.8 12.2 58 121-178 632-690 (695)
250 1wlq_A Geminin; coiled-coil; 2 45.2 95 0.0033 23.3 7.6 38 57-94 32-69 (83)
251 3he5_B Synzip2; heterodimeric 44.6 67 0.0023 21.3 6.5 35 122-156 13-47 (52)
252 3ra3_B P2F; coiled coil domain 44.6 22 0.00075 20.9 2.9 23 67-89 4-26 (28)
253 3u06_A Protein claret segregat 44.3 62 0.0021 30.8 7.9 35 122-156 6-40 (412)
254 1kd8_B GABH BLL, GCN4 acid bas 44.1 60 0.002 20.6 5.5 29 129-157 4-32 (36)
255 2i1j_A Moesin; FERM, coiled-co 44.0 20 0.0007 35.6 4.6 12 214-225 519-530 (575)
256 3gp4_A Transcriptional regulat 43.9 1.2E+02 0.0041 24.1 10.2 42 121-162 90-131 (142)
257 1avy_A Fibritin, gpwac M; bact 43.0 37 0.0013 24.8 4.6 36 118-153 7-42 (74)
258 3pe0_A Plectin; cytoskeleton, 42.8 1.8E+02 0.0061 25.8 15.0 31 66-96 44-74 (283)
259 4fm3_A Uncharacterized hypothe 42.7 1.1E+02 0.0039 23.5 9.9 66 78-157 30-95 (98)
260 1fzc_C Fibrin; blood coagulati 42.1 18 0.00062 33.5 3.6 35 108-145 3-37 (319)
261 3mud_A DNA repair protein XRCC 41.4 1.1E+02 0.0038 26.0 8.1 46 104-155 126-171 (175)
262 2dgc_A Protein (GCN4); basic d 41.4 82 0.0028 22.1 6.2 6 172-177 52-57 (63)
263 1uii_A Geminin; human, DNA rep 41.2 1.1E+02 0.0038 22.9 8.1 38 57-94 40-77 (83)
264 2q6q_A Spindle POLE BODY compo 41.0 1E+02 0.0035 22.4 7.1 65 120-188 4-69 (74)
265 3sjb_C Golgi to ER traffic pro 40.7 66 0.0023 24.6 6.0 24 165-188 57-80 (93)
266 1ybz_A Chorismate mutase; cons 40.7 1E+02 0.0035 23.0 7.1 36 120-155 18-53 (91)
267 2gjh_A Designed protein; oblig 40.7 6.2 0.00021 27.2 0.1 24 16-39 35-58 (62)
268 1gqe_A Release factor 2, RF2; 40.7 2.4E+02 0.0081 26.6 14.0 21 208-228 95-116 (365)
269 1naf_A ADP-ribosylation factor 40.3 1.6E+02 0.0054 24.4 8.8 36 191-226 90-128 (158)
270 3w03_C DNA repair protein XRCC 40.1 60 0.0021 27.8 6.3 40 104-149 143-182 (184)
271 2lf0_A Uncharacterized protein 40.1 50 0.0017 26.5 5.4 22 121-142 38-59 (123)
272 1io1_A Phase 1 flagellin; beta 39.8 92 0.0031 29.3 8.2 74 116-189 3-79 (398)
273 3c3f_A Alpha/beta peptide with 39.7 54 0.0018 20.6 4.3 25 130-154 5-29 (34)
274 2xzr_A Immunoglobulin-binding 39.6 1.3E+02 0.0045 23.3 15.3 89 70-158 13-101 (114)
275 1t6f_A Geminin; coiled-coil, c 39.3 73 0.0025 20.3 4.9 29 118-146 6-34 (37)
276 3c3g_A Alpha/beta peptide with 39.1 56 0.0019 20.4 4.3 25 130-154 4-28 (33)
277 2jn6_A Protein CGL2762, transp 39.1 10 0.00035 27.9 1.2 34 165-198 60-93 (97)
278 1a93_B MAX protein, coiled coi 39.1 52 0.0018 20.7 4.2 23 128-150 9-31 (34)
279 3vp9_A General transcriptional 39.1 37 0.0013 26.0 4.3 38 121-158 16-54 (92)
280 3kqg_A Langerin, C-type lectin 39.0 23 0.0008 28.6 3.5 10 148-157 24-33 (182)
281 2b9c_A Striated-muscle alpha t 38.6 1.6E+02 0.0055 24.0 13.5 43 118-160 79-121 (147)
282 2j1d_G DAAM1, disheveled-assoc 38.3 2.7E+02 0.0094 26.6 11.8 21 163-183 341-361 (483)
283 1s1c_X RHO-associated, coiled- 38.2 1.1E+02 0.0039 22.2 7.8 16 188-203 43-58 (71)
284 2oxj_A Hybrid alpha/beta pepti 38.1 59 0.002 20.4 4.3 24 130-153 5-28 (34)
285 2vkl_A RV0948C/MT0975; helical 37.8 78 0.0027 23.5 6.0 37 120-156 13-49 (90)
286 2ve7_A Kinetochore protein HEC 37.8 46 0.0016 30.4 5.7 20 135-154 187-206 (315)
287 2yo3_A General control protein 37.2 71 0.0024 28.9 6.6 39 121-159 218-256 (268)
288 1y1u_A Signal transducer and a 36.6 1.4E+02 0.0047 30.0 9.2 33 121-153 21-53 (585)
289 3u06_A Protein claret segregat 36.5 1E+02 0.0035 29.3 8.0 24 127-150 32-55 (412)
290 1uii_A Geminin; human, DNA rep 36.3 1.3E+02 0.0046 22.5 7.3 34 114-147 41-74 (83)
291 2xv5_A Lamin-A/C; structural p 36.3 1.1E+02 0.0038 22.2 6.4 21 125-145 18-38 (74)
292 3n27_A Fusion glycoprotein F0, 36.3 1.2E+02 0.0043 22.5 6.7 69 119-187 6-76 (80)
293 2d8d_A Aroag, phospho-2-dehydr 36.3 91 0.0031 22.8 6.1 35 121-155 5-39 (90)
294 1gu4_A CAAT/enhancer binding p 36.2 77 0.0026 23.3 5.6 18 121-138 52-69 (78)
295 1a93_B MAX protein, coiled coi 36.1 27 0.00092 22.0 2.5 29 176-204 5-33 (34)
296 2yo3_A General control protein 36.0 1.3E+02 0.0046 27.1 8.2 50 98-157 212-261 (268)
297 3viq_A SWI5-dependent recombin 35.8 90 0.0031 24.8 6.4 62 67-155 4-65 (122)
298 2xdj_A Uncharacterized protein 35.7 1.3E+02 0.0046 22.2 10.1 42 121-162 22-63 (83)
299 1t3j_A Mitofusin 1; coiled coi 35.7 1.5E+02 0.0051 22.8 7.7 18 144-161 75-92 (96)
300 2hy6_A General control protein 35.5 68 0.0023 20.1 4.3 27 129-155 4-30 (34)
301 3i9y_A Sensor protein; stacked 35.3 2.5E+02 0.0085 25.3 11.3 86 142-231 39-128 (276)
302 3emo_C HIA (adhesin); transmem 35.1 19 0.00066 30.2 2.4 41 193-233 52-92 (162)
303 2ve7_C Kinetochore protein NUF 35.0 38 0.0013 30.1 4.4 62 118-189 147-208 (250)
304 3rmi_A Chorismate mutase prote 34.9 95 0.0033 24.1 6.3 37 119-155 12-48 (114)
305 1uo4_A General control protein 34.9 71 0.0024 20.1 4.3 24 130-153 5-28 (34)
306 3efg_A Protein SLYX homolog; x 34.7 1.3E+02 0.0045 21.9 7.2 49 44-99 16-64 (78)
307 1f5n_A Interferon-induced guan 34.5 3.5E+02 0.012 26.8 16.0 15 165-179 568-582 (592)
308 1jnm_A Proto-oncogene C-JUN; B 34.4 51 0.0017 22.8 4.2 11 143-153 25-35 (62)
309 3csx_A Putative uncharacterize 34.3 1.1E+02 0.0037 22.8 6.1 31 197-227 48-78 (81)
310 2js5_A Uncharacterized protein 34.2 1.3E+02 0.0046 21.8 7.9 61 166-226 5-65 (71)
311 2zvf_A Alanyl-tRNA synthetase; 33.9 86 0.003 25.3 6.2 29 196-224 29-57 (171)
312 3plt_A Sphingolipid long chain 33.9 2.5E+02 0.0085 24.8 20.4 92 100-200 88-179 (234)
313 3etw_A Adhesin A; antiparallel 33.8 1.8E+02 0.0061 23.1 11.2 27 163-189 74-100 (119)
314 2aze_B Transcription factor E2 33.8 84 0.0029 24.3 5.7 32 129-160 9-40 (106)
315 2aze_B Transcription factor E2 33.8 66 0.0022 24.9 5.1 36 121-156 8-43 (106)
316 3oa7_A Head morphogenesis prot 33.7 72 0.0025 27.7 5.8 46 121-166 32-78 (206)
317 2efr_A General control protein 33.7 2E+02 0.0069 23.7 23.3 116 63-182 14-137 (155)
318 1yhn_B RILP, RAB interacting l 33.7 1.2E+02 0.0042 21.5 5.9 52 134-187 4-58 (65)
319 1nkp_B MAX protein, MYC proto- 33.7 89 0.003 22.6 5.6 12 123-134 51-62 (83)
320 4dci_A Uncharacterized protein 33.6 1.2E+02 0.0042 25.0 7.0 59 142-200 31-95 (150)
321 1qvr_A CLPB protein; coiled co 33.4 3.1E+02 0.011 27.9 11.6 26 165-190 431-456 (854)
322 3iv1_A Tumor susceptibility ge 32.8 1.5E+02 0.0051 21.9 10.5 61 122-185 14-74 (78)
323 3oa7_A Head morphogenesis prot 32.5 1.5E+02 0.0051 25.8 7.5 26 127-152 31-56 (206)
324 2bni_A General control protein 32.3 83 0.0028 19.7 4.3 25 130-154 5-29 (34)
325 3d2f_A Heat shock protein homo 32.1 3.9E+02 0.014 26.6 11.9 49 166-215 603-651 (675)
326 2wt7_A Proto-oncogene protein 32.0 1.3E+02 0.0043 20.8 6.8 24 130-153 27-50 (63)
327 3htk_B Structural maintenance 31.9 1.4E+02 0.0046 21.2 6.4 36 127-162 5-40 (73)
328 1gk6_A Vimentin; intermediate 31.9 1.2E+02 0.0043 20.7 7.1 35 122-156 10-44 (59)
329 3fb2_A Spectrin alpha chain, b 31.4 2.2E+02 0.0075 23.4 14.9 28 64-91 47-74 (218)
330 2k48_A Nucleoprotein; viral pr 31.1 1.9E+02 0.0065 22.6 10.4 34 66-99 38-71 (107)
331 4dnd_A Syntaxin-10, SYN10; str 30.9 2E+02 0.0069 22.9 11.6 47 134-180 75-128 (130)
332 1ecm_A Endo-oxabicyclic transi 30.9 1.2E+02 0.004 23.0 6.1 35 121-155 7-41 (109)
333 2w6b_A RHO guanine nucleotide 30.8 1.3E+02 0.0046 20.8 6.8 31 64-94 4-34 (56)
334 3he5_B Synzip2; heterodimeric 30.8 1.2E+02 0.004 20.1 6.9 37 124-160 8-44 (52)
335 1nkp_B MAX protein, MYC proto- 30.8 69 0.0023 23.2 4.6 26 130-155 51-76 (83)
336 3vbb_A Seryl-tRNA synthetase, 30.5 1.9E+02 0.0064 28.5 8.9 37 118-154 33-69 (522)
337 4aj5_1 SKA3, spindle and kinet 30.2 1.9E+02 0.0065 22.4 7.7 35 128-162 44-78 (101)
338 3iyk_A VP5; icosahedral virus; 29.9 4.1E+02 0.014 26.1 19.8 77 126-204 146-223 (526)
339 3i9w_A Sensor protein TORS; st 29.8 3.2E+02 0.011 24.8 13.4 87 140-233 50-140 (290)
340 4ev6_A Magnesium transport pro 29.8 3.1E+02 0.01 24.6 12.1 11 5-15 119-129 (339)
341 1zxa_A CGMP-dependent protein 29.7 1E+02 0.0034 22.2 5.1 13 148-160 40-52 (67)
342 2p01_A Alpha-2-macroglobulin r 29.7 3.2E+02 0.011 25.3 9.8 72 147-224 238-313 (323)
343 2k48_A Nucleoprotein; viral pr 29.7 2E+02 0.0069 22.4 8.1 63 120-185 36-103 (107)
344 1pya_A Pyruvoyl-dependent hist 29.6 15 0.00053 27.4 0.7 24 238-267 17-40 (81)
345 1s35_A Beta-I spectrin, spectr 29.5 2.3E+02 0.0077 23.0 14.4 31 64-94 34-64 (214)
346 1deb_A APC protein, adenomatou 29.4 1.4E+02 0.0047 20.4 7.6 25 118-142 9-33 (54)
347 3f6n_A Virion-associated prote 29.4 2.1E+02 0.0071 23.0 7.4 56 128-183 4-60 (129)
348 3he4_A Synzip6; heterodimeric 29.4 93 0.0032 20.9 4.5 15 145-159 36-50 (56)
349 2de0_X Alpha-(1,6)-fucosyltran 29.3 3.9E+02 0.013 26.1 11.0 58 26-88 7-66 (526)
350 2w83_C C-JUN-amino-terminal ki 29.3 1.7E+02 0.0059 21.6 10.2 38 118-155 8-45 (77)
351 1wlx_A Alpha-actinin 4; three- 29.0 1.5E+02 0.0052 23.8 6.7 75 58-151 10-84 (129)
352 1aa0_A Fibritin, gpwac E; bact 28.8 1.4E+02 0.0047 23.4 6.1 56 88-153 29-84 (113)
353 3a2a_A Voltage-gated hydrogen 28.7 1.1E+02 0.0037 21.3 4.8 38 185-222 11-48 (58)
354 3sjb_C Golgi to ER traffic pro 28.5 1.1E+02 0.0036 23.5 5.3 24 66-89 19-42 (93)
355 2zdi_C Prefoldin subunit alpha 28.3 1.5E+02 0.0052 23.7 6.7 92 134-225 10-138 (151)
356 3vem_A Helicase protein MOM1; 28.3 2.2E+02 0.0076 22.5 9.0 19 121-139 34-52 (115)
357 1use_A VAsp, vasodilator-stimu 28.3 47 0.0016 22.2 2.9 8 174-181 33-40 (45)
358 3pe0_A Plectin; cytoskeleton, 28.3 3.1E+02 0.011 24.2 16.5 27 196-222 154-180 (283)
359 3haj_A Human pacsin2 F-BAR; pa 28.1 3.9E+02 0.013 25.3 20.6 24 63-86 39-62 (486)
360 1r73_A TM1492, 50S ribosomal p 28.0 1.4E+02 0.0048 21.0 5.7 48 164-214 9-56 (66)
361 3ibp_A Chromosome partition pr 28.0 2.9E+02 0.01 25.3 9.1 22 137-158 21-42 (302)
362 2wvr_A Geminin; DNA replicatio 27.7 2.4E+02 0.0083 24.5 8.1 37 58-94 110-146 (209)
363 3c98_B Syntaxin-1A; protein co 27.6 2.1E+02 0.0071 24.0 7.9 11 128-138 87-97 (279)
364 3trt_A Vimentin; cytoskeleton, 27.5 1.6E+02 0.0056 20.7 9.9 7 133-139 56-62 (77)
365 1j1d_B Troponin T, TNT; THIN f 27.5 2.2E+02 0.0074 22.1 7.3 37 123-159 46-82 (106)
366 2f1m_A Acriflavine resistance 27.3 1.4E+02 0.0048 25.6 6.8 10 215-224 121-130 (277)
367 1fio_A SSO1 protein; four heli 26.8 2.6E+02 0.0088 22.8 12.5 116 62-196 1-116 (196)
368 4emc_A Monopolin complex subun 26.7 3E+02 0.01 23.6 8.7 25 125-149 12-36 (190)
369 2f1m_A Acriflavine resistance 26.6 1.8E+02 0.006 24.9 7.3 14 76-89 73-86 (277)
370 3ter_A Mammalian stromal inter 26.6 2.5E+02 0.0087 22.8 7.6 51 126-185 59-111 (136)
371 3viq_B Mating-type switching p 26.4 1.8E+02 0.006 21.9 6.1 45 134-178 2-49 (85)
372 1yvl_A Signal transducer and a 26.4 5.3E+02 0.018 26.2 17.9 36 80-115 77-112 (683)
373 3u0c_A Invasin IPAB, 62 kDa an 26.4 3E+02 0.01 23.4 11.4 44 130-173 114-158 (201)
374 1gk6_A Vimentin; intermediate 26.3 1.6E+02 0.0054 20.2 6.1 39 45-83 10-48 (59)
375 2pnv_A Small conductance calci 26.3 84 0.0029 20.7 3.8 27 155-181 13-40 (43)
376 3kin_B Kinesin heavy chain; mo 26.3 1.1E+02 0.0037 23.9 5.2 18 143-160 99-116 (117)
377 3q0x_A Centriole protein; cent 25.8 2.8E+02 0.0097 24.3 8.4 43 118-160 170-212 (228)
378 2zxx_A Geminin; coiled-coil, c 25.7 2E+02 0.007 21.2 7.5 27 115-141 30-56 (79)
379 4g2k_A General control protein 25.6 2.6E+02 0.0088 22.4 9.6 64 121-191 23-87 (125)
380 3aco_A Pacsin2, protein kinase 25.5 3.6E+02 0.012 24.0 19.9 187 28-215 5-254 (350)
381 3abh_A Pacsin2, protein kinase 25.3 3.4E+02 0.012 23.7 18.1 163 49-232 32-211 (312)
382 1qys_A TOP7; alpha-beta, novel 25.2 8.4 0.00029 29.1 -1.4 23 16-38 79-101 (106)
383 1sf9_A YFHH hypothetical prote 25.1 52 0.0018 26.6 3.1 33 196-228 17-54 (128)
384 3vlc_E Golgi to ER traffic pro 25.1 85 0.0029 24.1 4.2 23 165-187 57-79 (94)
385 1fxk_C Protein (prefoldin); ar 25.1 2.3E+02 0.0078 21.9 7.1 41 119-159 88-128 (133)
386 1d7m_A Cortexillin I; coiled-c 25.0 2.3E+02 0.0079 21.6 15.8 35 73-107 17-51 (101)
387 1ytz_T Troponin T; muscle, THI 25.0 1.6E+02 0.0055 22.9 6.0 39 122-160 45-83 (107)
388 2xus_A Breast cancer metastasi 24.8 1.3E+02 0.0045 20.3 4.6 37 141-177 7-45 (49)
389 3zx6_A HAMP, methyl-accepting 24.7 3.8E+02 0.013 24.0 24.0 46 131-176 113-158 (341)
390 1e52_A Excinuclease ABC subuni 24.1 1E+02 0.0034 21.8 4.2 40 168-209 21-60 (63)
391 3fx0_A NF-kappa-B essential mo 23.9 55 0.0019 25.2 2.9 42 109-150 45-86 (96)
392 3hd7_B Syntaxin-1A; membrane p 23.7 2.4E+02 0.0083 21.4 10.2 43 118-160 13-55 (109)
393 1tu3_F RAB GTPase binding effe 23.5 1.2E+02 0.0042 22.3 4.6 42 57-107 23-64 (79)
394 1u2m_A Histone-like protein HL 23.2 51 0.0018 26.0 2.9 77 113-192 27-114 (143)
395 2wvr_A Geminin; DNA replicatio 23.2 2.5E+02 0.0084 24.4 7.3 27 177-203 145-171 (209)
396 2r2v_A GCN4 leucine zipper; co 23.1 1.5E+02 0.005 18.6 4.7 26 129-154 4-29 (34)
397 2xv5_A Lamin-A/C; structural p 23.1 2.2E+02 0.0074 20.6 8.5 6 151-156 23-28 (74)
398 3vlc_E Golgi to ER traffic pro 23.1 25 0.00085 27.1 0.9 33 156-188 55-87 (94)
399 1g8x_A Myosin II heavy chain f 23.1 1.3E+02 0.0043 32.1 6.5 22 115-136 922-943 (1010)
400 2zjr_V 50S ribosomal protein L 22.9 1.6E+02 0.0054 20.8 5.1 48 163-213 8-55 (67)
401 3sja_C Golgi to ER traffic pro 22.8 1.8E+02 0.006 20.8 5.3 13 121-133 41-53 (65)
402 3ck6_A Putative membrane trans 22.7 2.3E+02 0.008 23.9 7.3 18 100-117 208-225 (252)
403 1e52_A Excinuclease ABC subuni 22.7 1.9E+02 0.0064 20.3 5.4 37 144-180 21-59 (63)
404 2qag_B Septin-6, protein NEDD5 22.7 18 0.00061 34.7 0.0 50 142-191 343-393 (427)
405 2bnx_A Diaphanous protein homo 22.5 12 0.00041 35.2 -1.3 47 124-176 338-384 (386)
406 2ve7_C Kinetochore protein NUF 22.3 53 0.0018 29.1 3.0 12 144-155 152-163 (250)
407 3pxg_A Negative regulator of g 22.2 1.3E+02 0.0044 28.5 5.9 32 161-192 417-448 (468)
408 2d4y_A HAP1, flagellar HOOK-as 22.2 4.8E+02 0.016 24.5 10.0 76 136-211 67-148 (463)
409 3ret_A Salicylate biosynthesis 22.2 49 0.0017 25.0 2.4 37 119-155 8-44 (101)
410 3qh9_A Liprin-beta-2; coiled-c 21.9 2.5E+02 0.0085 20.9 7.7 55 131-188 17-71 (81)
411 3erv_A Putative C39-like pepti 21.8 22 0.00076 31.4 0.4 22 247-268 85-109 (236)
412 3okq_A BUD site selection prot 21.7 3.3E+02 0.011 22.2 12.7 69 121-189 56-125 (141)
413 2gr7_A Adhesin; trimeric autot 21.7 27 0.00092 28.2 0.9 23 212-234 38-60 (129)
414 1vq8_V 50S ribosomal protein L 21.6 2E+02 0.007 20.4 5.6 46 164-213 12-59 (71)
415 2oto_A M protein; helical coil 21.5 3.2E+02 0.011 21.9 16.3 10 207-216 135-144 (155)
416 1nlw_A MAD protein, MAX dimeri 21.5 2.3E+02 0.0079 20.5 6.0 41 106-152 40-80 (80)
417 1lrz_A FEMA, factor essential 21.1 2.8E+02 0.0095 25.7 8.0 22 166-187 249-270 (426)
418 2l5g_A GPS2 protein, G protein 21.1 1.7E+02 0.0057 18.7 4.3 25 121-145 10-34 (38)
419 1uru_A Amphiphysin; endocytosi 21.0 3.6E+02 0.012 22.4 16.9 31 43-73 38-68 (244)
420 1lwu_B Fibrinogen beta chain; 20.9 1.6E+02 0.0053 27.2 6.0 12 71-82 3-14 (323)
421 3r8s_Y 50S ribosomal protein L 20.7 1E+02 0.0035 21.5 3.7 45 165-212 10-54 (63)
422 2l3l_A Tubulin-specific chaper 20.6 3E+02 0.01 21.3 8.7 48 139-186 57-106 (111)
423 2dgc_A Protein (GCN4); basic d 20.6 1.2E+02 0.004 21.2 3.9 31 126-156 30-60 (63)
424 1hci_A Alpha-actinin 2; triple 20.6 4.9E+02 0.017 23.8 18.3 150 62-214 164-350 (476)
425 3fx7_A Putative uncharacterize 20.4 2.9E+02 0.0099 21.0 9.7 61 120-180 21-86 (94)
426 2fcw_A Alpha-2-macroglobulin r 20.1 3.2E+02 0.011 21.4 9.7 32 121-152 26-57 (109)
427 3pdy_A Plectin; cytoskeleton, 20.1 3.7E+02 0.013 22.1 17.4 38 62-99 37-74 (210)
428 2zxx_A Geminin; coiled-coil, c 20.0 2.7E+02 0.0092 20.6 7.9 37 144-180 38-74 (79)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.71 E-value=0.0039 Score=56.14 Aligned_cols=104 Identities=11% Similarity=0.093 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHH------HHHH
Q 023255 50 RIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELR------VIES 123 (285)
Q Consensus 50 ~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr------~~e~ 123 (285)
+|......+..+-.....+-+....++..+...+.++.-+...+... +..+..+-.++.+.+..+. ...+
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~----e~~i~~~~~ri~~~~~~l~~v~~~kE~~a 94 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKN----EQTLQDTNAKIASIQKKMSEIKSERELRS 94 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 33333333333333333344444444444444444444444443322 3333445555555555543 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
+..||..+..++..+.....++..++..++.++.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.61 E-value=0.0016 Score=69.81 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqe 144 (285)
+..|-.....|++.|.....+...|...+.......+.++-+|-.....||......+..++++..+..++.++....++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555554444443444444443333333333333444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 145 MIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+..+...+++.+.+.+.+ ..++..|++|...|++++..+...+
T Consensus 1003 ~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444 4556666666666666666655433
No 3
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=97.49 E-value=2.9e-05 Score=66.78 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=37.6
Q ss_pred cccCceEE---------Eeec--CC-CcccccCCccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 023255 2 NIYGNSLH---------TTLH--NH-SQFTMSGRRVLREPPLSTRALPPQHSPSLHHLEDRIAIQHS 56 (285)
Q Consensus 2 ~ifG~tli---------vtf~--p~-rsvTleGD~ydpeG~LsGGs~p~~~~~l~n~Lee~L~~q~~ 56 (285)
.+||+++| +.+. |+ ++||++||+++|+|.++||+.+..++++ ....+|...+.
T Consensus 140 ~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~~~~~~~l--~~~~el~~l~~ 204 (213)
T 1gxl_A 140 FLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVF--ERRIKLKHLEQ 204 (213)
T ss_dssp HHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCCSSCCCTT--HHHHHHHHHHH
T ss_pred HHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCCccccchh--hHHHHHHHHHH
Confidence 36899999 3443 33 8999999999999999999864445555 33444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.48 E-value=0.00045 Score=74.46 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023255 47 LEDRIAIQHS 56 (285)
Q Consensus 47 Lee~L~~q~~ 56 (285)
+++++.....
T Consensus 862 L~~eL~el~~ 871 (1184)
T 1i84_S 862 KDEELQRTKE 871 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 5
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.43 E-value=2.3e-05 Score=68.02 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.4
Q ss_pred cccCceEE---------EeecCC-CcccccCCccCCCCCCCCCCCCCCCCch
Q 023255 2 NIYGNSLH---------TTLHNH-SQFTMSGRRVLREPPLSTRALPPQHSPS 43 (285)
Q Consensus 2 ~ifG~tli---------vtf~p~-rsvTleGD~ydpeG~LsGGs~p~~~~~l 43 (285)
.+||+++| +.+.++ ++||++||+++|+|.++||+.+..++.+
T Consensus 142 ~~l~~~~vv~~l~~A~~l~~~~~~~~VTldG~~~~~~G~~tgG~~~~~~~~l 193 (213)
T 2wd5_B 142 HVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYDTRKSRL 193 (213)
T ss_dssp HHHTTEEEESSHHHHHHHHHHSSCEEECTTCCEECTTSCEEECCCCCC---H
T ss_pred HHcCCEEEECCHHHHHHHHHhcCceEEeCCCcEECCCeEEECCCCCCCccHh
Confidence 36899999 444434 8999999999999999999866443444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.25 E-value=0.055 Score=48.56 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 59 QSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 59 q~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
|.+-....++......|..+|...+.++..+...+.....+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~ 54 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEE 54 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555544444
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.14 E-value=0.011 Score=47.63 Aligned_cols=99 Identities=13% Similarity=0.284 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIES 123 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~ 123 (285)
+...+..|..+...|.....++-++..+...++..+..-+. |.|.++.....
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~----------------------------KyE~E~~~r~~ 66 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE----------------------------KLQEEMLQREE 66 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hhHHHHHHHHH
Confidence 55677788888777777777777766665555544433332 33334555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIK 170 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLk 170 (285)
++.++..++.++....-.+-+|..+|++|+.||.=++.. ...+.+|+
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999888876655 44444443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.89 E-value=0.022 Score=61.13 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=49.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhh
Q 023255 107 LYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD-MAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 107 L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qk-l~aLkaEIe~LrqEl~~~ra 185 (285)
+.+...+|..++...+...+|+.++.+.+..|..+..++..+++.+.++........++ ...|+..|..|++|.+++|.
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666666666666666666666666665544222 24566666667777666666
Q ss_pred hhhhhh
Q 023255 186 AIECEK 191 (285)
Q Consensus 186 ~~e~ek 191 (285)
.++.-.
T Consensus 1038 q~~~l~ 1043 (1080)
T 2dfs_A 1038 EKEELN 1043 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.85 E-value=0.19 Score=43.01 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl 166 (285)
.+...|.+-+.+-........+|...|..|..||.+.....+++
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445566667777777766665444443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.68 E-value=0.15 Score=44.34 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.++....+++..|.+|...-.+|.........-+.+|.
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 33333333444444444433344333333333333333
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=96.33 E-value=0.034 Score=55.03 Aligned_cols=78 Identities=3% Similarity=0.199 Sum_probs=48.8
Q ss_pred hhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Q 023255 94 ASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI-KQEMIKDLNEINGDLAKARDESKDMAAIKAE 172 (285)
Q Consensus 94 ~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~-rqeL~aevq~LekDL~~~~~d~qkl~aLkaE 172 (285)
..+..+.+.+++.+ .+.++..+.+.. +....... -.+|...++.|+..|.. ..++|..|+.-
T Consensus 77 sKnsKdseqy~k~~-------------~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdn---QlsnIrvLQsn 139 (562)
T 3ghg_A 77 QKNNKDSHSLTTNI-------------MEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIE---KVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhhchhHHHHHHHH-------------HHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34445555566666 445555554444 33333223 33666666667666554 45788888888
Q ss_pred HHHHHHHHHhhhhhhh
Q 023255 173 IETERQEIHKGRAAIE 188 (285)
Q Consensus 173 Ie~LrqEl~~~ra~~e 188 (285)
|+.++.+|+|++.+|+
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888875
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.29 E-value=0.037 Score=54.32 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q 023255 173 IETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 173 Ie~LrqEl~~~ra~~e~ekk 192 (285)
++.+++|..+.+..++..|+
T Consensus 539 ~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhh
Confidence 33333333333433333333
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.22 E-value=0.69 Score=54.82 Aligned_cols=32 Identities=6% Similarity=0.199 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 195 ASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 195 ~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
.+.-+.++.++.++-...+|.++|..|+..++
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555444
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.20 E-value=0.81 Score=54.23 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQA 220 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLra 220 (285)
.++.+++++|..+..+|..+...|+.-.+....+-.+++.+++.|.+-.+=|..|-.
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555666666666666666666555555555666666666666655544444433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.07 E-value=0.091 Score=51.48 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 170 KAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 170 kaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
..+++..+++++.....++..++...+.-.+.+.|.+.+..+.+|+.++++|+...+
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444544455556666666777777777778888888876655
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.89 E-value=0.15 Score=38.85 Aligned_cols=79 Identities=11% Similarity=0.232 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 74 ~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
.||++|..+..+-.++...+.+.+..- -+=-.|.|.|+.....+..++..++.++..+.-.+.+|.++|.+|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~-------edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDI-------MRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555443331 1223466777777888888888888888888888888888888888
Q ss_pred HHHHHH
Q 023255 154 GDLAKA 159 (285)
Q Consensus 154 kDL~~~ 159 (285)
.+|.=+
T Consensus 77 eEl~fL 82 (86)
T 3swk_A 77 EEIAFL 82 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777643
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.89 E-value=0.3 Score=39.21 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
+|+.+ ++.++..+...+...+.-...|+.+..++..+.+++.... ..+ -.|...|++|+.||.=++.-++.
T Consensus 38 ~l~le---ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~--l~r-~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 38 RVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS--LAR-LDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5666677777777777777788888888888888876532 111 23556666666665544444443
No 18
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=95.54 E-value=0.0014 Score=57.87 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.4
Q ss_pred cccCceEE---------EeecC--C-CcccccCCccCCCCCCCCCC
Q 023255 2 NIYGNSLH---------TTLHN--H-SQFTMSGRRVLREPPLSTRA 35 (285)
Q Consensus 2 ~ifG~tli---------vtf~p--~-rsvTleGD~ydpeG~LsGGs 35 (285)
.+||+++| +.|.. . +.||++||+++|+|.++||+
T Consensus 151 ~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~ 196 (233)
T 2wd5_A 151 YACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 196 (233)
T ss_dssp HHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECH
T ss_pred HHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCC
Confidence 36899999 44442 3 99999999999999999997
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.51 E-value=0.55 Score=39.56 Aligned_cols=81 Identities=14% Similarity=0.262 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
.....|..+|..+.++|.....++..+...++ +++.+ .........|+..+..++.+-...|.+.....
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~-~~~~l----------~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLKE-DYNTL----------KRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHHHH----------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777666653 33334 22345677888888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 023255 150 NEINGDLAKARD 161 (285)
Q Consensus 150 q~LekDL~~~~~ 161 (285)
..+++||.++.+
T Consensus 82 ~~ie~ElEeLTa 93 (154)
T 2ocy_A 82 DKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888653
No 20
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.28 E-value=0.092 Score=40.01 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=58.6
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023255 86 LRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (285)
Q Consensus 86 L~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qk 165 (285)
|+-|..++.....++ .+++.+ ++.++..+...+...+.-...|+.+.+++..+.+|+....-. |
T Consensus 2 i~eLr~qi~~l~~e~-----------~~l~~e---~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~--r 65 (86)
T 3swk_A 2 MRELRRQVDQLTNDK-----------ARVEVE---RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA--R 65 (86)
T ss_dssp CHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH--H
T ss_pred HHHHHHHHHHHHhhH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--H
Confidence 445666666666655 366666 777888889999999999999999999999999998875411 1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023255 166 MAAIKAEIETERQEIHKG 183 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ 183 (285)
-.|...|++|+.||.=+
T Consensus 66 -~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 -LDLERKVESLQEEIAFL 82 (86)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 35666666666665433
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.00 E-value=1.6 Score=37.85 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 023255 78 ELSLAEQELRH 88 (285)
Q Consensus 78 EL~laqhEL~~ 88 (285)
++..+++++.-
T Consensus 25 ~~~~le~El~E 35 (189)
T 2v71_A 25 SFQEARDELVE 35 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=94.98 E-value=0.44 Score=38.37 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
++.+|-+.+.-+.+..+.---+..-|-.|...|.+-.+- -+++.+|+.||+.|.++|+.+.+.+|.-++.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444445555555555554444 4467888888888888887776655444433
No 23
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=94.91 E-value=0.2 Score=37.42 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023255 56 SDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADI 135 (285)
Q Consensus 56 ~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~ei 135 (285)
.+++.++.+|..|..++ +.|+..+.+| |.+++++--|-..++.++
T Consensus 9 kevEnLi~EN~eLl~TK----NaLnvvk~DL-------------------------------I~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 9 REVENLILENTQLLETK----NALNIVKNDL-------------------------------IAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHH-------------------------------HHHHHHHHhHHHHHHHHH
Confidence 47888999999888887 6777777653 666777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~ 158 (285)
..+...+..+..++..++.++.+
T Consensus 54 ~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 54 EAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888777764
No 24
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=94.79 E-value=0.85 Score=36.05 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK-ARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~-~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e 196 (285)
||.+.++-+.|-.++....++...+++|..++..++.+-.. +.....++..|+.+|..=+.|+.++..+++--......
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~ 86 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999998744443 33337788888888888888888877766555555555
Q ss_pred hhHHH
Q 023255 197 NHEQR 201 (285)
Q Consensus 197 ~~eq~ 201 (285)
+..+.
T Consensus 87 l~~~~ 91 (107)
T 2no2_A 87 WAAEF 91 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.77 E-value=0.91 Score=43.25 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
.+|+.+|+.||..+.++|+.+++.|+..|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788899999999999999998888654
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.74 E-value=0.97 Score=37.21 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=10.9
Q ss_pred CcccccCCccCCCCC
Q 023255 16 SQFTMSGRRVLREPP 30 (285)
Q Consensus 16 rsvTleGD~ydpeG~ 30 (285)
=+|++.|..|--.|+
T Consensus 10 V~V~I~Gk~Y~i~g~ 24 (138)
T 3hnw_A 10 AEVILGGKVIKLGGY 24 (138)
T ss_dssp EEEEETTEEEEECSC
T ss_pred eEEEECCEEEEecCC
Confidence 367888998876554
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.73 E-value=1.3 Score=35.63 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH-----------HHHHHHhhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIET-----------ERQEIHKGRAAIEC 189 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~-----------LrqEl~~~ra~~e~ 189 (285)
+..+..++.+++..+.+....+++|..+...+..+.+++....+...++-++.+. |-..|..+..-++.
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777777777777777766655443333333333333 33445555555666
Q ss_pred hhhhchhhhHHHHHHHHhHHHHHHHHHH
Q 023255 190 EKKNRASNHEQREIMEKNIISVAQQIER 217 (285)
Q Consensus 190 ekk~~~e~~eq~q~meknli~ma~e~ek 217 (285)
+...+.++....+-|+..+-.+-..++-
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655554444444443
No 28
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.40 E-value=0.55 Score=44.82 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
++..-.+-|.++|.+.+.+- +.+++.-.....-+..+...+|-++ .. .....+..|--+-....+++.+||++
T Consensus 394 e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGF---QDVEAQAATANHTVMALMASLDAEK--AQ-GQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhH---HHHHHHhhhcchhHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555432 2233333333333333333332222 22 22355666666667777888888877
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.00 E-value=1.2 Score=35.51 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 116 AELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 116 aelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
+++..+.-+++.+.--+.|...-.+.|..+..++..|..++..++..
T Consensus 59 ~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 59 IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555554443
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=93.77 E-value=1.3 Score=42.18 Aligned_cols=46 Identities=2% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
-.+|..++.-|.+-+.. ....|..|+.-|+.++.+|+|++.+|++=
T Consensus 115 s~eLe~~i~~lk~~V~~---q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIE---QVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433322 35577888888888888888888887653
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.66 E-value=1.2 Score=35.76 Aligned_cols=77 Identities=9% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
..|.||..++..|+.|....+.+.....+|+..|.+.... ...+..+...|..|..++.++|..++---..|.+++.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777777776666 6666667777777777777776666544444444443
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.54 E-value=0.74 Score=45.64 Aligned_cols=94 Identities=11% Similarity=0.205 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH-hhhhhhhhhhhhchhhhHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH-KGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~-~~ra~~e~ekk~~~e~~eq 200 (285)
..++.-|..++..+.++...+++...-+..+...|.+- +.... +.+....|+. .+|..|.|-|..=..++.+
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~r------q~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsn 132 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGD------FSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSH------HHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH------HHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444444444444443333221 11111 3333344444 4455555555555556666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 023255 201 REIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 201 ~q~meknli~ma~e~ekLrael 222 (285)
++++++||-..-.+|.||.-+|
T Consensus 133 IrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777776666
No 33
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=93.53 E-value=0.57 Score=37.32 Aligned_cols=84 Identities=10% Similarity=0.232 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
++.++..|..+..-+......+.+|..++.+...++ ..|.-|++++.--+.+|+-|..++-.+-+.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l--------------E~I~vLkaQv~IY~~DF~aERadREkl~~e 91 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM--------------ETVPVLKAQADIYKADFQAERHAREKLVEK 91 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHccchhhHHHHHhH
Confidence 455666666666666665555555555555544444 235555555555667777777777766666
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 023255 201 REIMEKNIISVAQQIERL 218 (285)
Q Consensus 201 ~q~meknli~ma~e~ekL 218 (285)
...++..+-.+-+++.+|
T Consensus 92 Ke~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 92 KEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666665555443
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.45 E-value=1.1 Score=34.91 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
+++..++.++..|.........++..|..++.+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444455555555554444
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.14 E-value=2.8 Score=33.71 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
.+.........|.+.++.|..++..+.+++.+
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444433
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.09 E-value=2.8 Score=33.64 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAAS 95 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~ 95 (285)
..+.-|+++|..++.-|+..+.+...
T Consensus 25 N~T~lLq~qLTqAQe~l~~~eaQAaT 50 (121)
T 3mq7_A 25 NVTHLLQQELTEAQKGFQDVEAQAAT 50 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777776655543
No 37
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=93.07 E-value=2.8 Score=41.23 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
..-|-+|+.-|.||-+.+......+++-|.-+.+.-.+.+.++|| ++++++.=.+.+++-+. ......+++...
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka~Ye~---~l~kY~~dlakY 78 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKADYEA---KLAKYQADLAKY 78 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345678999999999999999999999988888887777777777 55555444333333222 122233333344
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 023255 153 NGDLAKARDESKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 153 ekDL~~~~~d~qkl~aLkaEIe~LrqEl~~ 182 (285)
.+|+.+++ .++.+-+.++....+++..
T Consensus 79 ~~~~AeY~---~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 79 QKDLADYP---VKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44444333 3455555555555555443
No 38
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=93.02 E-value=2.9 Score=39.62 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh---HHHHHHHHHHHhhhhHHHHHHH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE---RDAEVRELYEKSLKLDAELRVI 121 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae---~e~~~r~L~~k~~kleaelr~~ 121 (285)
..+-++|...+...+....+.+++...+..++|||+.++.-+.-....+.-.+-. +|..+.+-+++-. .
T Consensus 122 e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~--------~ 193 (373)
T 3hhm_B 122 EAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFK--------R 193 (373)
T ss_dssp CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--------h
Confidence 3455667777778888888999999999999999998888777666655544332 2222223322221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
++-..|+..+..-.+.|++..+++....+.|+++|.... .....+..++.+|+=++..++.
T Consensus 194 ~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 194 EGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQA---AEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccChHHHHHHH
Confidence 112235555555555666666666666666666665533 2334556666666666655554
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.94 E-value=3 Score=33.56 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023255 143 QEMIKDLNEINGDLAK 158 (285)
Q Consensus 143 qeL~aevq~LekDL~~ 158 (285)
..|..+++.+..||.+
T Consensus 87 ~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 87 GSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.89 E-value=3 Score=33.43 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 023255 145 MIKDLNEINGDLAK 158 (285)
Q Consensus 145 L~aevq~LekDL~~ 158 (285)
|.++++.+..||.+
T Consensus 87 lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 87 LEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.81 E-value=1.1 Score=36.13 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
..|.||..++..|+.|....+.+.....+|+..|.+.... ...+..+...|..|..++.++|..++---.-|.+++.
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666667777777766666 5566666667777777777766666544444444443
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=92.79 E-value=0.71 Score=34.84 Aligned_cols=48 Identities=13% Similarity=0.320 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCV-------IKQEMIKDLNEINGDLAKARD 161 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~-------~rqeL~aevq~LekDL~~~~~ 161 (285)
|++||++-..+..||-+++.+...+.. ..++|..+++.+.++|.++++
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566666666666666666665555444 344444444444444444433
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.39 E-value=0.49 Score=38.22 Aligned_cols=51 Identities=24% Similarity=0.497 Sum_probs=28.6
Q ss_pred hHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 97 KAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 97 ~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+.++|.+|..| -+.++.++.++..+..+.+. ...+|...|..|+.||..-+
T Consensus 10 ~d~rD~~Ie~L----------kreie~lk~ele~l~~E~q~---~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 10 KDEKDHLIERL----------YREISGLKAQLENMKTESQR---VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CCTHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 55555566555555443333 34456666666666666644
No 44
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=92.16 E-value=1.6 Score=34.80 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHE 199 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~e 199 (285)
.+.+..++.+++.++.++...+++|... +.+-..| ..++..|..-+..--+.|..++.+|.--|. +--+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~-------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~ 77 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF-------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---DVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4566677777777777777777777766 5555556 788888888888888888888888876554 3455
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 023255 200 QREIMEKNIISVAQQIERLQAELA 223 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~ 223 (285)
|++..-..-=.+..|+.+|.+|=.
T Consensus 78 qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666666666667777777777643
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=92.07 E-value=2.2 Score=33.05 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 74 ALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 74 ~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
.|...|..+..-|...+..|.. |-+.+.++++++..+.-+++.+.--+.|...-.+.|..+..+.+.|.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~-----------lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDK-----------LKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555555555554444443 33344566667778888888888888888888888888888888877
Q ss_pred HHHHHHhhhhccHHH
Q 023255 154 GDLAKARDESKDMAA 168 (285)
Q Consensus 154 kDL~~~~~d~qkl~a 168 (285)
.++..++...++|..
T Consensus 75 ~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 75 EQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666555543
No 46
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=91.76 E-value=1.2 Score=37.03 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
..++.++...++....+....+.+.+++..++.++..+..+.+-..+.+ .+|+.+|.-.|.+-
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReAK 131 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREAK 131 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555555443333322222 45555555555543
No 47
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.69 E-value=1.5 Score=33.04 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD 161 (285)
Q Consensus 103 ~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~ 161 (285)
.|...+|.+..|..+ ++++|.+-..|..+.+.+...+..|..+.+++..|...|+.
T Consensus 14 KIq~avdtI~lLqmE---ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 14 KVQQAIDTITLLQME---IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666 67777777777788888888888888888888888777664
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.49 E-value=3.9 Score=31.62 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
|+..+..+++.+...+..+...++...|
T Consensus 52 k~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 52 QLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655555554444
No 49
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.33 E-value=0.9 Score=35.22 Aligned_cols=43 Identities=5% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
.++.++.++.+++.++.+|...+.++..++..+.+.+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3566677888888999999999999999999999999998764
No 50
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=90.41 E-value=1.3 Score=34.35 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 023255 171 AEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (285)
Q Consensus 171 aEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrae 221 (285)
..|.-|++++.--+.+|.-|+..+-.+-+..+.+...+-.+-+++.+|.+|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555666666665555555555555555555666665543
No 51
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.37 E-value=8.8 Score=37.52 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
+..++..+.+.+..+..+....+++..+++.+.+-+++.-.. .+.|..|+..++.++..|+++...+.
T Consensus 123 i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666554332 56777788888888877777766653
No 52
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.06 E-value=3.6 Score=33.07 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
+..|+..|.+|++++..-...+++...+...|..++..
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 53
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.95 E-value=7.3 Score=32.10 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 71 ~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
....|+-|+..++..+......+..+...+-.|.-++ -|...||||++.-+.|-..| .+.....|++|..+--
T Consensus 61 Ei~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDi-RKLrELEADLKEKDsMVe~L------T~TiG~LrKELEdEkl 133 (167)
T 4gkw_A 61 EIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDM-RKLGELEADLKEKDSMVESL------TETIGILRKELENEKL 133 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTHHHHHTHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhH-HHHHHHHhHHhhhhHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666665555444 34455566655444442111 1122223333333333
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 151 EINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 151 ~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
.+..-|..| ..|+-|-+.+++.|..-|+
T Consensus 134 K~~E~MdSF-------E~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 134 KAAENMDSF-------EKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-------HHHhhhhHhHHHHHHHHHH
Confidence 333223222 3456666666666665553
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.89 E-value=1.7 Score=34.06 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh----hccH------------HHHHHHHHHHHHHHHhhhhhh
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK--ARDE----SKDM------------AAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~--~~~d----~qkl------------~aLkaEIe~LrqEl~~~ra~~ 187 (285)
++..++.+|..|...+..|..++..|+-.|.. .+.| .-|+ ...+.+++.|+.|+.++|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555 1222 2222 245566666666666666543
No 55
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=89.40 E-value=11 Score=33.26 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHhHHHHHH
Q 023255 195 ASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 195 ~e~~eq~q~meknli~ma~ 213 (285)
...++++|.||...+..-+
T Consensus 208 p~~~~~lQ~lee~r~~~lk 226 (301)
T 2efk_A 208 PQIFDKLQDMDERRATRLG 226 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777766554443
No 56
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.23 E-value=6.8 Score=37.34 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=21.8
Q ss_pred hhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 184 RAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 184 ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
|.-|+|-|+.=.+++.++++|+.||...-.+|.||.-.|
T Consensus 119 e~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666655555555555555
No 57
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=88.79 E-value=2.1 Score=35.47 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e 196 (285)
.|..+.+.|.....+|+.-|..|.+|+..-... -.++..+..+|+.++.+|..+...|.-||-.--.
T Consensus 18 kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKK 86 (141)
T 3okq_A 18 ELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKK 86 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHH
Confidence 456777888888999999999999999887766 8889999999999999999999999999865443
No 58
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.79 E-value=5.1 Score=33.57 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHH
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ 215 (285)
..|...+..+..+|..++.+|.. ..+-+..++.|+..|+-++..+.....--++-|.++++.. |-.|++|.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~e---K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW------M~rk~qEA 141 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIAL---KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW------LKKTEKET 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 33333333444444444444433 2333455777888888888887777777777777776653 44577788
Q ss_pred HHHHHH
Q 023255 216 ERLQAE 221 (285)
Q Consensus 216 ekLrae 221 (285)
++|-.+
T Consensus 142 e~MN~a 147 (152)
T 3a7p_A 142 EAMNSE 147 (152)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 777544
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=88.77 E-value=0.91 Score=31.77 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIM 204 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~m 204 (285)
+=+|+.++..|++|..++..++|.|.+++-++=.=+.-|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999986654433333
No 60
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=88.76 E-value=2.4 Score=36.18 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=20.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 161 DESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 161 ~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
-|..++.+|-+||..|+.++...|..+
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999988877655443
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.72 E-value=3.5 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
..+|..++..|..+...+..|..++..+..|+.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 62
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.34 E-value=4.1 Score=30.67 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHH
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAA 232 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~ 232 (285)
..|.+.|+.+=..|.-++--|+..|-.|..+..+.+....+-....+|.++|+.|..+-..|=++-
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555666666666667777766777778888999999988888777654
No 63
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.30 E-value=4.1 Score=30.13 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
.|+..|..+++.....+..+-.-++...|
T Consensus 48 kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 48 KKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443
No 64
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=88.16 E-value=2.3 Score=32.00 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 135 IEKLCVIKQEMIKDLNEINGDLAK---ARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 135 iq~l~~~rqeL~aevq~LekDL~~---~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
+..|-.....|.+++..|+..|.+ |..|..++..+.++++.+.++|..+-..-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566667777777776 345788899999999999999988766554
No 65
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=88.06 E-value=6.7 Score=29.23 Aligned_cols=24 Identities=8% Similarity=0.350 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
++.+|.+++.++......-++|..
T Consensus 38 lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 38 LQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333
No 66
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=88.02 E-value=8 Score=30.08 Aligned_cols=65 Identities=11% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIK---DLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~a---evq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~ 182 (285)
+..++.++.+|..++..+.++......... ....+.++|...-.+ ......++..|+.|.++..+
T Consensus 11 ~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 11 FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555544322 113455555555555 44455666666666665543
No 67
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.97 E-value=7.9 Score=31.67 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLA 82 (285)
Q Consensus 65 nqrla~~h~~LqqEL~la 82 (285)
+..+.....++=--|+++
T Consensus 50 ~~~l~~~r~aVLaALNia 67 (138)
T 3hnw_A 50 YRRMSAELRTDMMYLNIA 67 (138)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 455555555555555554
No 68
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=87.88 E-value=10 Score=36.43 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
|.+-|..++..+..-|.+.+.+..+...+..+.....+.|+..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555544444444444444444444443
No 69
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=87.66 E-value=4.9 Score=33.16 Aligned_cols=104 Identities=11% Similarity=0.192 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD--MAAIKAEIETERQEIH 181 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qk--l~aLkaEIe~LrqEl~ 181 (285)
+..++|++-.|...|+..++++ ++.++...+.. ...-+.|-.+.+.+.+++..++.-++. ..+...+++.+..++.
T Consensus 6 ~~~I~d~A~eL~~aI~eseeyk-~yk~A~~~i~~-D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 6 KKDIVQQARNLAKMISETEEVD-FFKRAEAQINE-NDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 3458899999999999999886 78788777765 445567777788888888888876654 5788888888888887
Q ss_pred hhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 023255 182 KGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAE 221 (285)
Q Consensus 182 ~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrae 221 (285)
.--...+| ..-|..|-.|-.+|-+.=++
T Consensus 84 ~np~V~~y------------~~Ae~~l~~LL~~I~~iI~~ 111 (151)
T 2pih_A 84 EIPVIQEF------------RDSQMEVNDLLQLVAHTISN 111 (151)
T ss_dssp HSHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 76555544 33455666666666655444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.52 E-value=16 Score=34.65 Aligned_cols=31 Identities=6% Similarity=-0.041 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 172 EIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 172 EIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
|-+.++.++...-.+++.=+-.+.+.+.+.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 71
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.35 E-value=6.3 Score=29.72 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 112 LKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 112 ~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
.+.|.+ +..+..++..++..+.+....+++|..+...+.++-+++...
T Consensus 10 ~~~eeE---m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 10 ARQEEE---MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 445677888888888888888888888888888887776644
No 72
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.34 E-value=8.4 Score=29.57 Aligned_cols=26 Identities=4% Similarity=0.178 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
++-.+..+++++...+......++--
T Consensus 68 ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 68 QQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555554444433
No 73
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.75 E-value=10 Score=30.09 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleae 117 (285)
+.|+.+|.....+-..|.........+.-.+|-+|.+++..-|..
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~ 60 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEIL 60 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443333333
No 74
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=86.65 E-value=23 Score=34.61 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.0
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+.|..|+.-|+.++.+|+|++.+|.-
T Consensus 131 i~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 131 VNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999888763
No 75
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.53 E-value=4.9 Score=30.22 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=10.0
Q ss_pred ccHHHHHHHHHHHHHHHHhh
Q 023255 164 KDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ 183 (285)
++-.+|..||+.++.++..+
T Consensus 52 ~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 76
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.45 E-value=11 Score=31.56 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=6.4
Q ss_pred HHHHHHHHHhHH
Q 023255 215 IERLQAELANAE 226 (285)
Q Consensus 215 ~ekLrael~n~e 226 (285)
+++|+..+..++
T Consensus 117 ~~~L~~ql~e~~ 128 (154)
T 2ocy_A 117 NKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 77
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=86.31 E-value=22 Score=34.21 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023255 166 MAAIKAEIETERQEIHK 182 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~ 182 (285)
+..+....+.++.++..
T Consensus 287 ~~~l~~~~~~~~~~l~~ 303 (517)
T 4ad8_A 287 LEDVVEFGAQAAEELAG 303 (517)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 78
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=86.17 E-value=25 Score=33.84 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhh------------hhhhhhchhhhHHHHHHHHhHHHHHH
Q 023255 165 DMAAIKAEIETERQEIHKGRAAI------------ECEKKNRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~------------e~ekk~~~e~~eq~q~meknli~ma~ 213 (285)
++..++..++..++++..++..| +|+ ..-...++++|.||..-|..-+
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~-~~~~~~~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM-ENMEQVFEQCQQFEEKRLRFFR 245 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443 222 3445567778888877666655
No 79
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=85.73 E-value=2.6 Score=32.76 Aligned_cols=62 Identities=5% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 023255 125 HAELDRVRADIEKLCVI-KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~-rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.+||....+.+...... .++|..+|..|++++..+..-.++.+-|+.+-.-|..||......
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333322 455566666666666665555555556666555555555554443
No 80
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=85.55 E-value=16 Score=31.05 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
...+-.+|...|.+.+....+-+++...+..+.+|++....-+.-....+.=.
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~F 64 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIF 64 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34667888889999999999999999999999999999988777776666533
No 81
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=85.39 E-value=14 Score=30.36 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
.....|+++|.-.+.||...-..+..-+ -|.+---+++..-.+||..+|++...++..-+.....+
T Consensus 18 ~D~~s~~~eleEnqeEL~iVgkML~EEq--------------gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 18 QDTESLQKQLEENQEELEIVGNMLREEQ--------------GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555666666666665543333111 11111145566667788888888777666655555554
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHH-------HHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 150 NEINGDLAKARDESKDMAAIKAEI-------ETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 150 q~LekDL~~~~~d~qkl~aLkaEI-------e~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
++-...-+.-.-|.-||.+|.+.+ ++|.+-|--+|..+|.||-.-.|.+. | .|||.-|-
T Consensus 84 krn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~Md----------S----FE~LkvEN 149 (167)
T 4gkw_A 84 KRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMD----------S----FEKLSMEN 149 (167)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HHHHHHHH
T ss_pred HhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HHHHhhhh
Confidence 444433333334455666666665 56667777777777777755444332 2 35666665
Q ss_pred HhHHhh
Q 023255 223 ANAEKR 228 (285)
Q Consensus 223 ~n~e~r 228 (285)
.+...|
T Consensus 150 E~vker 155 (167)
T 4gkw_A 150 ENLKEK 155 (167)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 555544
No 82
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.42 E-value=7.1 Score=29.27 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023255 128 LDRVRADI 135 (285)
Q Consensus 128 l~qlr~ei 135 (285)
+.+++.++
T Consensus 44 l~~~r~e~ 51 (86)
T 1x8y_A 44 MAEMRARM 51 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 83
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.92 E-value=19 Score=30.56 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 101 e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
|...|+|-++...+++. ...+.+++..+++.+..-...+...+
T Consensus 47 E~~~rELq~~~~~L~~~---k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 47 ESLNRELQERNRILENS---KSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 45555555555555554444443333
No 84
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.53 E-value=14 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.+..|+..+..++.+-...|.+...+...|+++|.++.
T Consensus 23 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 23 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777777777776654
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.31 E-value=23 Score=33.60 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=4.3
Q ss_pred HHHHHHHHhhhh
Q 023255 174 ETERQEIHKGRA 185 (285)
Q Consensus 174 e~LrqEl~~~ra 185 (285)
+.+...+..+++
T Consensus 459 ~~~~~~~~~~~~ 470 (487)
T 3oja_A 459 GEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhHhccc
Confidence 333333333333
No 86
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=83.23 E-value=13 Score=35.64 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKN 193 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~ 193 (285)
+..+++.+|.+-.+|.++..++..|....+..-.+-+ .....-....-...++|..++.+.++.+-
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q---------~~~~d~~e~~tq~skkml~~~~~~e~~~~----- 101 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEK---------QTLPQSIEQLTQKSKKIIEEIIRYENTIL----- 101 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST---------TCCSSCHHHHHHHHHHHHHHHHHTHHHHH-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------CCCCCchhhHHHHHHHHHHHHHHHHHHhc-----
Confidence 3444566666666666666666665555555422100 00001112223344455555555543221
Q ss_pred chhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhh
Q 023255 194 RASNHEQREIMEKNIISVAQQIERLQAELANAEKR 228 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r 228 (285)
..-.+++.|+.-|-+....|+.|+..|..-+.+
T Consensus 102 --~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 102 --AHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 122455666666666677777777777665543
No 87
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.14 E-value=7.1 Score=28.76 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
|.+...-|..+....++...+|+.|..++.+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444
No 88
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=81.61 E-value=11 Score=30.55 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh-hchhhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 155 DLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK-NRASNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 155 DL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk-~~~e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
||..-++...+|.+|...|+.|..++..+...+..-.. .+++- --..+.++.+..--.|.+|.+++|-.
T Consensus 52 ele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~-~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 52 KLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVED-YFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555666666666666655555553222 22333 33667788887777788888888743
No 89
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.88 E-value=7.5 Score=26.69 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
++++.....++..+-..|.+|+.....-+++|...+.+|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888889999999999999999999998888888765
No 90
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=79.88 E-value=9.8 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl 166 (285)
..=++|.-+....+.|+.|...-..|+.++..+.+.++.+++++..|
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 34456777777888888888888888888888888888877775544
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.37 E-value=11 Score=30.01 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ae 148 (285)
.|.++++..+.|.| ++.++.++..++..+.......+++..+
T Consensus 6 ~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~ 47 (125)
T 1joc_A 6 RRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGRE 47 (125)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788888888888 7777777777777776655555554433
No 92
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.33 E-value=26 Score=29.20 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHH
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIIS 210 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ 210 (285)
+...-.+.......+..+|..|+..+.+.. .+-......+..|..+|.++...+.-+|..+....+.+..+=..|.+
T Consensus 61 LE~seekasqrEd~yEeqIk~L~~kLKEAE---~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAE---TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444445555555554444422 23333344444455555555555555555555444444443344444
Q ss_pred H
Q 023255 211 V 211 (285)
Q Consensus 211 m 211 (285)
|
T Consensus 138 ~ 138 (155)
T 2efr_A 138 L 138 (155)
T ss_dssp H
T ss_pred c
Confidence 4
No 93
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.01 E-value=3.1 Score=34.22 Aligned_cols=8 Identities=50% Similarity=0.521 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023255 72 HVALKQEL 79 (285)
Q Consensus 72 h~~LqqEL 79 (285)
+..|..+|
T Consensus 34 l~~l~~~l 41 (135)
T 2e7s_A 34 YNTLKREL 41 (135)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=78.72 E-value=15 Score=28.16 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIK-------DLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~a-------evq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+..++..|..++..|+++......++. .+....+.+.+.=-. ..++..|.++|+.+|.+.-+.|..+
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554444333332 233333444433333 8999999999999999998888764
No 95
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.44 E-value=20 Score=27.35 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 167 AAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
..+..+++.....+..+...++..
T Consensus 54 q~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 54 KGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.20 E-value=22 Score=34.92 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
-++-++..++..+++.|.+.+..++.+|..+.
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555556666666666666665543
No 97
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.43 E-value=10 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
+..+..+|+..+.+|..+...++|
T Consensus 35 ~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 35 INEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455544444444
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.26 E-value=13 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 023255 169 IKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 169 LkaEIe~LrqEl~~~ra~~ 187 (285)
...+|..|+.+|.+.++.+
T Consensus 52 kd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 52 KDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 4455555666666655543
No 99
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=77.20 E-value=9.4 Score=31.78 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=6.8
Q ss_pred HHHHHhHHHHHHHHHHH
Q 023255 202 EIMEKNIISVAQQIERL 218 (285)
Q Consensus 202 q~meknli~ma~e~ekL 218 (285)
.++-+.|..+..+--++
T Consensus 129 ~~L~~kf~~~m~~yq~~ 145 (180)
T 1s94_A 129 STISRKFVEVMSDYNTT 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 100
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=76.89 E-value=3.7 Score=31.83 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhHH
Q 023255 205 EKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 205 eknli~ma~e~ekLrael~n~e 226 (285)
+.-|..++..+++|++++-+-.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777775443
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.88 E-value=31 Score=28.74 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKD 148 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~ae 148 (285)
+.++.++.|+..++.+...+......|..+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444443
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.87 E-value=11 Score=36.34 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~ 181 (285)
+-++-++-.++..+++.|.+.+..++.+|..+. .++....+|++++..++.++.
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~-------~~~~~~~~l~~~~~~~~~~~~ 86 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRR-------KKGEPVDELLAKSREIVKRIG 86 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555554432 233334455555555444443
No 103
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=76.69 E-value=42 Score=30.07 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=38.2
Q ss_pred HHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 180 IHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 180 l~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
-+..|.+.-.|+.-+--+++..+..=+.=++|..|+..|+.=|
T Consensus 188 ~~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l 230 (253)
T 2d1l_A 188 KQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTIS 230 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHH
Confidence 3567789999999999999999999999999999999999855
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=76.55 E-value=6.9 Score=38.44 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl 180 (285)
+..+-++-++..++..++++|.+.+..++.+|..+.+ ++....+|++++..|+.+|
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i 87 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEK 87 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666666655432 2233344555555554333
No 105
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.15 E-value=13 Score=25.59 Aligned_cols=43 Identities=5% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 135 iq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+.+|....+.|..+|..|..|+.. |+.++...+.|-.|+-.-|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a----------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA----------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555444333 3334445555555544333
No 106
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.12 E-value=5.6 Score=38.57 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=4.4
Q ss_pred hHHHHHHHH
Q 023255 198 HEQREIMEK 206 (285)
Q Consensus 198 ~eq~q~mek 206 (285)
..|.+.+++
T Consensus 160 ~~H~~lg~~ 168 (455)
T 2dq0_A 160 KLHVDLLEI 168 (455)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHhc
Confidence 335555554
No 107
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=75.66 E-value=17 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 70 ATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
.-+....++......+|...-..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666665554444
No 108
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=75.61 E-value=26 Score=28.83 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD--E--SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~--d--~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
.+++.+..+|..++.-.+.......+..-++..++.||.+... + .+++..|..+|..+-..++.+...-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4567777777777777777777788888888888888887552 2 5677888888877777777766543
No 109
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=75.46 E-value=39 Score=29.12 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 59 QSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 59 q~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
..++.+...+......|..+-+..-..|..-
T Consensus 31 ~~~~~el~~f~~eRa~iE~eYak~L~kLa~~ 61 (276)
T 2v0o_A 31 QISTKELADFVRERATIEEAYSRSMTKLAKS 61 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888889999988888776665543
No 110
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=75.39 E-value=13 Score=28.81 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
..+.+.|..++.+|++....|.-|+
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 111
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.12 E-value=25 Score=26.76 Aligned_cols=38 Identities=8% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
...++..+..+..+|..+......+..++..+...|..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554444
No 112
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=75.01 E-value=26 Score=32.26 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=4.2
Q ss_pred CCcccCCCC-CCCC
Q 023255 241 STSYAASYG-NPDP 253 (285)
Q Consensus 241 ~~~y~~~~g-n~~~ 253 (285)
.|-||+|++ -|+.
T Consensus 320 aGiyGMNf~~mPel 333 (363)
T 2iub_A 320 AGIYGMNFEYMPEL 333 (363)
T ss_dssp TTSCC---------
T ss_pred HhhhcccCCCCCcc
Confidence 578999996 4543
No 113
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.78 E-value=5.3 Score=31.23 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------------HH-hhhhccHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNE--INGDLA---------------KA-RDESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~--LekDL~---------------~~-~~d~qkl~aLkaEIe~LrqEl~ 181 (285)
.+..++.+|..|+.|..+|......|..++.. +..|.. .. +.-...+..|++|++.||.-+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888888877766 111211 11 1114678889999999998887
Q ss_pred hhh
Q 023255 182 KGR 184 (285)
Q Consensus 182 ~~r 184 (285)
.+.
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 654
No 114
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.55 E-value=27 Score=26.79 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~ 182 (285)
....++..+|..|....+-+..++...+..|..++.. .+......+++.+|...|+-
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444321 22334445566666555543
No 115
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=74.03 E-value=24 Score=28.41 Aligned_cols=72 Identities=13% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
-++.....|-.+|..+.+++..|-..+.+.....|.|.+.| ..+..|...+..+.++...+...+-
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri--------------~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKI--------------DMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667888888889988888887765554443333 3444444444444444444444444
Q ss_pred HHHHHH
Q 023255 147 KDLNEI 152 (285)
Q Consensus 147 aevq~L 152 (285)
.+|+.+
T Consensus 120 ~~v~~~ 125 (132)
T 1ykh_B 120 RHVDSM 125 (132)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.00 E-value=15 Score=36.07 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLrael 222 (285)
++.++++.+...+-.+-.++..+.+++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665554444444444444444
No 117
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.98 E-value=11 Score=29.30 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=15.5
Q ss_pred hccHHHHHHHHHHHHHHHHhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
..++.+|..||+.|+.|-++++.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666554
No 118
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.95 E-value=22 Score=30.21 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 023255 170 KAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 170 kaEIe~LrqEl~~~ra~~e~ 189 (285)
.+.|+.+.+|+..+|+.+..
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766554
No 119
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.89 E-value=3.3 Score=34.08 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 023255 210 SVAQQIERLQA 220 (285)
Q Consensus 210 ~ma~e~ekLra 220 (285)
.+-.|+|-|-|
T Consensus 71 ~ie~ElE~LTa 81 (135)
T 2e7s_A 71 KLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 120
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.52 E-value=70 Score=31.15 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=13.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
..+++.+...|.....+|.+....|
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 121
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=73.41 E-value=25 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
+-++.++.+|+.+.+.++.+|.....+|...++.++++=.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888887633
No 122
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.18 E-value=29 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=7.9
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 023255 200 QREIMEKNIISVAQQIERLQ 219 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLr 219 (285)
.++..+.-|..-...++|||
T Consensus 75 E~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 75 ELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333444443
No 123
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=72.84 E-value=35 Score=31.02 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.5
Q ss_pred CCcccCCCC-CCCC
Q 023255 241 STSYAASYG-NPDP 253 (285)
Q Consensus 241 ~~~y~~~~g-n~~~ 253 (285)
.|-||+|++ -|+.
T Consensus 296 aGiyGMNf~~mPel 309 (339)
T 4ev6_A 296 TGIYGMNFSYLPLA 309 (339)
T ss_dssp HHHTTCCCSCCTTS
T ss_pred HhhccCcCCCCCCc
Confidence 479999996 3543
No 124
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=72.45 E-value=11 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
+.+|..+++.|......|+.+|..+..|++..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~a 37 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555433
No 125
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=72.19 E-value=53 Score=29.19 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
.|..-+..++.....|+.|..+|+.|+.. ..+..||+.|+.||-.+-.+..-+++.+..-|.
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIAHLKYK----DPQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 34444455666666677777777776643 234677777777777777776666666655443
No 126
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.90 E-value=24 Score=27.77 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 200 QREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 200 q~q~meknli~ma~e~ekLrael~n~e 226 (285)
....+++++-.+...++++|+.+....
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
No 127
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.80 E-value=2.7 Score=41.93 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc----hh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNR----AS 196 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~----~e 196 (285)
..++...+.+.+.+.........+....+..|..+....+.+...|..-..+.+...+.|......-+.||..= .+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55666667777777777666666666666677766666666666665555555555555555444333333211 11
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 197 NHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 197 ~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
.......|+.-.-.-+.|.++|+.++..|.
T Consensus 417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~ 446 (575)
T 2i1j_A 417 KQEEVSRIQQEVELKDSETRRLQEEVEDAR 446 (575)
T ss_dssp -------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223333333344557777777776665
No 128
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=71.63 E-value=14 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.4
Q ss_pred hccHHHHHHHHHHHHHHHHhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
..||...+.+++.|+.++.+++.
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666543
No 129
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=71.45 E-value=13 Score=28.51 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHh
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHK 182 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~q-kl~aLkaEIe~LrqEl~~ 182 (285)
|..++|++..|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++..++.-++ -.+....++..+..++..
T Consensus 2 m~~I~d~A~eL~~~I~~s~ey~-~~~~a~~~i~~-d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~ 79 (113)
T 2iaz_A 2 MSNIYDSANELSRGLRGLPEYK-AVKAAKDAIAA-DAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQG 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhC
Confidence 3568899999999999999986 77777777754 33445555666666666666654444 236677788888877776
Q ss_pred hhhhhhh
Q 023255 183 GRAAIEC 189 (285)
Q Consensus 183 ~ra~~e~ 189 (285)
--..-+|
T Consensus 80 ~p~v~~y 86 (113)
T 2iaz_A 80 NSLLSEF 86 (113)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6555544
No 130
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=71.14 E-value=43 Score=27.69 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lrq 178 (285)
+..+.+|+..-+.-++-|....+.....+...++.+.+.+.-..++..++.+|++.-+
T Consensus 88 n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666677777777777777777788888877778888888888876543
No 131
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.08 E-value=7.8 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
++.++.|+..++..+..|....++|.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665555555555543
No 132
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=71.07 E-value=12 Score=29.51 Aligned_cols=99 Identities=11% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~q-kl~aLkaEIe~LrqEl~~~r 184 (285)
.++|++-.|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++...+.-++ -.++...++..+..++..-.
T Consensus 7 ~I~d~A~eL~~~I~~seEy~-~~k~A~~~l~~-D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~ 84 (122)
T 2oeq_A 7 PLHALARQLEQAIRASEPFQ-QLKRAYEDVRR-DETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNE 84 (122)
T ss_dssp TTHHHHHHHHHHHHHSHHHH-HHHHHHHHHHT-CTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCH
Confidence 57899999999999999986 77777776644 44456677778888888888776665 34788888888888887655
Q ss_pred hhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHH
Q 023255 185 AAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 185 a~~e~ekk~~~e~~eq~q~meknli~ma~e~ekL 218 (285)
..-+| ..-|..|-.|-.+|-+.
T Consensus 85 ~v~~~------------~~Ae~~l~~ll~~I~~i 106 (122)
T 2oeq_A 85 KLARL------------MALEQQMSITIAEVQQI 106 (122)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHHHHHHHHHHHHH
Confidence 54444 33355555555555543
No 133
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=70.98 E-value=44 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=62.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhh
Q 023255 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
-++.+|..+++.++....-+.....-++.......+...-++++..-+-...+. ......+..||+.|+.+|...-.
T Consensus 11 a~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaN 90 (239)
T 3pwx_A 11 IKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFN 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356688888999999999999999999999999888888888887766665433 45678889999999888776544
Q ss_pred h
Q 023255 186 A 186 (285)
Q Consensus 186 ~ 186 (285)
+
T Consensus 91 t 91 (239)
T 3pwx_A 91 A 91 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 134
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=70.91 E-value=52 Score=28.59 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc----HHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKD----MAAIKAEIETER 177 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qk----l~aLkaEIe~Lr 177 (285)
+++++|-.+ .+...++.++..+..+.+.+.....+|.++++.+-++=.++..+ -+| |.+=|+.|..++
T Consensus 123 i~elfd~~~------~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 123 IRELIAYAL------DTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 366655553 33334444444444444444444444444444444443333333 222 344444454444
No 135
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.82 E-value=30 Score=28.58 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
-++.....|-.+|..+..++..|-..+.+.....|.|.+. +..+..|...+..+.++...+...+-
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~r--------------i~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRK--------------IDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566788888888888888888776554444333 34455555555555555555556666
Q ss_pred HHHHHHHHHHHH
Q 023255 147 KDLNEINGDLAK 158 (285)
Q Consensus 147 aevq~LekDL~~ 158 (285)
.+|+.+=.++.+
T Consensus 120 ~~v~~~l~~ia~ 131 (151)
T 1yke_B 120 RHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 136
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=70.66 E-value=70 Score=29.94 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekL 218 (285)
..++..|.||...|..-+++=..
T Consensus 208 ~~~d~lQ~lEe~Ri~~lk~~L~~ 230 (406)
T 4dyl_A 208 GLLRSLQDLHEEMACILKEILQE 230 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999988887755443
No 137
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=70.61 E-value=26 Score=24.87 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l 89 (285)
|=.+..-|+.-++.||.++.-|..+.++...++.+|.-.+.|-.-|
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 4456666777777999999999988887777777776666655443
No 138
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.21 E-value=4.8 Score=38.60 Aligned_cols=70 Identities=11% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+..+-++-++-.++..+++.|.+.+..++.+|..+.++=.+...-..++..|+.+|+.+..++..+...+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666777777777776665432211111003344555555555555555544444
No 139
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=70.12 E-value=36 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.1
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
-.++++|+.||+.|.++|+.++..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888889999999999888743
No 140
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.03 E-value=54 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQ 66 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnq 66 (285)
.|.+-|-.++..|..-|.+.+
T Consensus 24 gl~d~L~kye~~V~~~l~~L~ 44 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLE 44 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHH
Confidence 345555555554444444433
No 141
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.30 E-value=47 Score=27.04 Aligned_cols=38 Identities=8% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI 173 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEI 173 (285)
.++....+++..+-..+.+.|.....+..++..+.+++
T Consensus 117 ~~~~~~~~e~~~~~~~~ek~ls~As~~~~k~~~~e~~~ 154 (155)
T 2oto_A 117 HRATALEKELEEKKKALELAIDQASQDYNRANVLEKEL 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444445555555433344444444443
No 142
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=67.99 E-value=39 Score=25.92 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQRE 202 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q 202 (285)
.+.-++..++.-...+.+|..+.+.++.-+..+.++ +++|.+|++.|+. .-..++.||-++.++-..+-
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd-------~Lk~l~~EklAkldLE~RLs 77 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE-------TLKNLELEKLARMELEARLA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcccHHHHHHHHHHHHHh
Confidence 344455555566666667777777777666665544 5566666666654 34567899999999988888
Q ss_pred HHHHhHH
Q 023255 203 IMEKNII 209 (285)
Q Consensus 203 ~meknli 209 (285)
-|||+=.
T Consensus 78 KtEKDkA 84 (101)
T 1d7m_A 78 KTEKDRA 84 (101)
T ss_dssp HHHHHHH
T ss_pred hhhhHHH
Confidence 8888743
No 143
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=67.95 E-value=30 Score=28.73 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
+...+..+....+.|.-+.+++.+++..-..+ .--|.+..-|+.+++.+..-++....=|+--...++|++.
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~-~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVVDQVRRQSAN-PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555666666666666666542222 1116666666666666666555555544444444444443
No 144
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=67.59 E-value=12 Score=26.73 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHH
Q 023255 167 AAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 167 ~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e 214 (285)
=+|+.++..|+++.++....+|+|.+++ +.+|+.+-.|...
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraR-------k~LE~~vrk~~k~ 50 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRAR-------KDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 4788999999999999999999998765 4566666555543
No 145
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=67.51 E-value=65 Score=28.32 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 65 NQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQE 144 (285)
Q Consensus 65 nqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqe 144 (285)
+...-++.+.=.|++.++.||.++-...+.-..+|. |+.+-| ..+..++-.|-+.+.+|..|....+.
T Consensus 63 qgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~---------RIt~~~---~~ia~~e~Rit~~e~~i~~l~~~v~~ 130 (242)
T 3c9i_A 63 QGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHES---------RITANT---KAITALNVRVTTAEGEIASLQTNVSA 130 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcCcccceeeecchhhhhhhhcccccHHH---------Hhhhhh---hhhhhhhheeecccccchhhhhhhhh
Confidence 444556677777899999998877666555332222 222223 33555566666677777777666666
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023255 145 MIKDLNEINGDLAKARDE 162 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d 162 (285)
+..+|-..+..+..++.|
T Consensus 131 ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 131 LDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhh
Confidence 666666666666666665
No 146
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.23 E-value=17 Score=34.63 Aligned_cols=31 Identities=6% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
.+-++-++-.++..+++.|.+.+..++.+|.
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555544
No 147
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.82 E-value=30 Score=24.26 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
.--+.++..+..+++.|.....+|..+|..|+.++
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555544443
No 148
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.74 E-value=2.9 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=14.6
Q ss_pred HHhhh--hccHHHHHHHHHHHHH
Q 023255 158 KARDE--SKDMAAIKAEIETERQ 178 (285)
Q Consensus 158 ~~~~d--~qkl~aLkaEIe~Lrq 178 (285)
+|.+| .+|+.+|+..|-+|+|
T Consensus 6 efendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHHHhcC
Confidence 45666 6777888877777763
No 149
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=66.49 E-value=36 Score=24.95 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.++..+-++.+.||.+|.....+++.|+..+.
T Consensus 11 ~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 11 SHDDALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555777788888888888888776665
No 150
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.41 E-value=38 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
..+...+..+..+|..+......+..++..
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333333333333
No 151
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=66.25 E-value=51 Score=26.62 Aligned_cols=105 Identities=16% Similarity=0.298 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAER-DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNE 151 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~-e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~ 151 (285)
..|+..++-+++++..+...+.++.-+- +-++-+-+. ..++++ ++.-+++|..+ .+|...+.+|..+|..
T Consensus 9 ~~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~--~~~qse---le~k~aeLe~l----eeL~~ki~eL~~kvA~ 79 (125)
T 2pms_C 9 VAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFR--APLQSK---LDAKKAKLSKL----EELSDKIDELDAEIAK 79 (125)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTTTCC--------------CHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHh--HHHHHH---HHHHHHHHHHH----HHHHhHHHHHHHHHHH
Confidence 4566667777777777766665544331 111111100 012222 22333344333 4577778888888888
Q ss_pred HHHHHHHHhhhh----ccHHHHHHHHHHHHHHHHhhhhh
Q 023255 152 INGDLAKARDES----KDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 152 LekDL~~~~~d~----qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
++.++..+.... .=+..|+..+..-+.|+.+..++
T Consensus 80 le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~ 118 (125)
T 2pms_C 80 LEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEAD 118 (125)
T ss_dssp HHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766421 11455555665555565554443
No 152
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.22 E-value=30 Score=33.94 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 023255 198 HEQREIME 205 (285)
Q Consensus 198 ~eq~q~me 205 (285)
..|...++
T Consensus 186 ~dH~~Lg~ 193 (501)
T 1wle_A 186 RGHLEIAE 193 (501)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHh
Confidence 34444444
No 153
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.21 E-value=33 Score=25.34 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDM 166 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl 166 (285)
+..+.-+....++...+..|...-..|..+|..|++++..+..=..++
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444555555566666666666666666666666666655433333
No 154
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=66.04 E-value=1.1e+02 Score=30.24 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 117 ELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 117 elr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
++...+-+++-+...++++..+.+.++.+++++.....+.+..+ ..+.++.+|-..++..+...+.-+-.+|
T Consensus 347 evae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~---d~l~a~~kek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 347 EVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHAN---DALNALLKEKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34455666677777888888888888888888877777755533 3444555555556666666665544333
No 155
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=65.96 E-value=5.3 Score=32.54 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNR 194 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~ 194 (285)
+..+.+.+...+..++.++..++.++.+.+.. .-.+.-|+=.+++|..+|.--|.+...||..-
T Consensus 21 Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkL 85 (130)
T 3cl3_D 21 ATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKL 85 (130)
T ss_dssp ------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555555555443333 45567777777777777777777777777543
No 156
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=65.93 E-value=39 Score=33.18 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHh-----------------
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHK----------------- 182 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~----------------- 182 (285)
+...+++|..++....++......+...+..|..|+-.|+.. ...---++..|.-+|.||-.
T Consensus 96 I~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DING~p~pgs~~t 175 (487)
T 2bsg_A 96 IGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSS 175 (487)
T ss_pred HHhhHHHHHHHhcchhhhhhhhhhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCCCCCcCCCCCCc
Confidence 333344444444444444444444444455555554444433 22233445566666555533
Q ss_pred -hhhhhhhhhhhchhhhHHHHHHHHh-----HHHHHHHHHHHHHHH
Q 023255 183 -GRAAIECEKKNRASNHEQREIMEKN-----IISVAQQIERLQAEL 222 (285)
Q Consensus 183 -~ra~~e~ekk~~~e~~eq~q~mekn-----li~ma~e~ekLrael 222 (285)
+.--|+-=...-..+-.....+|++ +=++.+||.+||+||
T Consensus 176 GmK~rV~~Nt~~i~~~~~RIt~LE~~~~dSDVG~Lt~ev~~LR~El 221 (487)
T 2bsg_A 176 GMKHRIINNTDVITSQGIRLSELETKFIESDVGSLTIEVGNLREEL 221 (487)
T ss_pred ceehhhhhhHHHHHhcccHHHHHHHhcccCCchHHHHHHHHHHHHh
Confidence 1112222223333444556677776 457899999999999
No 157
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=65.75 E-value=20 Score=32.11 Aligned_cols=13 Identities=54% Similarity=0.583 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhHH
Q 023255 214 QIERLQAELANAE 226 (285)
Q Consensus 214 e~ekLrael~n~e 226 (285)
+++.+++.+..++
T Consensus 136 ~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 136 QIKRNQASLDTAK 148 (341)
T ss_dssp HHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 158
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=65.07 E-value=70 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHHhHHHHHHHH
Q 023255 194 RASNHEQREIMEKNIISVAQQI 215 (285)
Q Consensus 194 ~~e~~eq~q~meknli~ma~e~ 215 (285)
-.+.++++|.||...+...+++
T Consensus 214 ~~~~~~~lQ~le~~r~~~lk~~ 235 (305)
T 2efl_A 214 IPNIFQKIQEMEERRIVRMGES 235 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788887776655543
No 159
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=64.99 E-value=72 Score=27.95 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHhHHH
Q 023255 34 RALPPQHSPSLHHLEDRIAIQHS-------DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA----ASVKAERDA 102 (285)
Q Consensus 34 Gs~p~~~~~l~n~Lee~L~~q~~-------EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i----~~~~ae~e~ 102 (285)
|...+|....++-|+.....++. -|+..+...++|-.-...+.++-.....-|......+ ..+..+.
T Consensus 85 ~~~~ppeg~~~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~-- 162 (235)
T 2odv_A 85 GQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGK-- 162 (235)
T ss_dssp TSSCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH--
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHH
Q 023255 103 EVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 103 ~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl 180 (285)
- ++..+++..+|..+...|+.+.+..++|. ++.=.+++ .++...|......|+..+
T Consensus 163 ----a----------~k~~e~ie~dL~~~e~~i~~l~~~a~~L~--------~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 163 ----V----------PQRAGEVERDLDKADSMIRLLFNDVQTLK--------DGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp ----C----------CSCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 023255 181 HKGR 184 (285)
Q Consensus 181 ~~~r 184 (285)
..-+
T Consensus 221 ~~r~ 224 (235)
T 2odv_A 221 NLRL 224 (235)
T ss_dssp HHHT
T ss_pred HHHH
No 160
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=64.86 E-value=10 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=34.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhH
Q 023255 160 RDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNI 208 (285)
Q Consensus 160 ~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknl 208 (285)
+...+++..|.++++.|+.|+.+++...+-.+|++.+.++ .|+|++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~---~Lqk~~ 226 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLK---RLQKSA 226 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHH
Confidence 3347889999999999999999998888888887655544 444444
No 161
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=64.81 E-value=40 Score=33.00 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
..+-++.++-.++..+++.|.+.+..++.+|..+.+
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455556666666777777777777666544
No 162
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=64.68 E-value=11 Score=29.07 Aligned_cols=45 Identities=7% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023255 75 LKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIE 136 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq 136 (285)
..-.++..-.|++.+...+-.+...+ .+..+.+..||..|+.++.
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h-----------------~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTH-----------------RKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 33345555555666555555444444 3334555566666665554
No 163
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=64.33 E-value=1.1e+02 Score=29.81 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 023255 47 LEDRIAIQHS 56 (285)
Q Consensus 47 Lee~L~~q~~ 56 (285)
|.+-|-.++.
T Consensus 82 lad~L~kye~ 91 (461)
T 3ghg_B 82 LQEALLQQER 91 (461)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 3444444444
No 164
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=64.10 E-value=61 Score=29.85 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHH
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAKARD-ESKDMAAIKA 171 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~~~~-d~qkl~aLka 171 (285)
.++...|.++....+.|.+++.++.. +++-.|.|..
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dprL~~ 115 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNA 115 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 56777788888888888888888887 4666666543
No 165
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=63.86 E-value=24 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
..++.+|..+-.++..+... +...++.|.++..+
T Consensus 46 ~~~~~~l~~l~~~i~~~a~~---ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 46 EKTKEELEELMSDIKKTANK---VRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34566666666655554443 33444455554443
No 166
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=63.29 E-value=35 Score=24.95 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
+..++..|..++.++..-...+..+..+++++
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 167
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=63.06 E-value=48 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQ 63 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~ 63 (285)
+...|+.......+|.+.+.
T Consensus 17 Fe~YE~df~~l~~~i~~kl~ 36 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPE 36 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444
No 168
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.02 E-value=36 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.++...+..|...-..|..+|+.|++++..+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 169
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=62.97 E-value=54 Score=25.84 Aligned_cols=76 Identities=9% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 148 DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 148 evq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
++.+|..||.-|.+-..|+.-+.+|+.-..+.+......=+.| .-.++-+..+.|+.++=-..+=|+||+.+|.+-
T Consensus 25 ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e--~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~r 100 (109)
T 2fcw_A 25 ELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGE--RVSRSREKHALLEGRTKELGYTVKKHLQDLSGR 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666655444443332211111 011122337788888888888999999988543
No 170
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=62.72 E-value=47 Score=25.09 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=10.6
Q ss_pred hccHHHHHHHHHH-HHHHHHhh
Q 023255 163 SKDMAAIKAEIET-ERQEIHKG 183 (285)
Q Consensus 163 ~qkl~aLkaEIe~-LrqEl~~~ 183 (285)
.+||..-+.+++. ++.+++++
T Consensus 71 ~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555 55555544
No 171
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=62.65 E-value=53 Score=28.37 Aligned_cols=77 Identities=6% Similarity=0.078 Sum_probs=60.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 110 k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.+.+|.++++.++.+..-+.....-++.......+...-++++..-+-...+. ......+..|++.|+.+|.+.-..
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~ 89 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANS 89 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45688888999999999999999999988888888888888888666665433 355688889999999998876554
No 172
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=62.29 E-value=70 Score=29.75 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=61.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhh
Q 023255 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~r 184 (285)
+-.+.+|..+++.++.+..-+.....-++.......+...-++++..-.....++ ......+..||+.|+.+|.+.-
T Consensus 28 ~aia~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~iA 107 (326)
T 3k8w_A 28 LAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVA 107 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999988888888888888887655555433 3457788889999988887765
Q ss_pred hh
Q 023255 185 AA 186 (285)
Q Consensus 185 a~ 186 (285)
..
T Consensus 108 Ns 109 (326)
T 3k8w_A 108 EQ 109 (326)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 173
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=61.86 E-value=54 Score=25.47 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
-|.+-+-.++|...-|.+.+-.+|+.++...+..|.+..=-+..+|.
T Consensus 54 Tr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~a 100 (114)
T 2xzr_A 54 TRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIA 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33343444444444444444444444444444443333333333333
No 174
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=61.59 E-value=11 Score=34.06 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLS 90 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~ 90 (285)
++++.....++..+-..|++|.++...+++||...+.||..|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566667777778888888888888888888888888774
No 175
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.95 E-value=52 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 023255 168 AIKAEIETERQEIH 181 (285)
Q Consensus 168 aLkaEIe~LrqEl~ 181 (285)
...+++.+|...|+
T Consensus 83 ~AE~evasLnRriq 96 (101)
T 3u59_A 83 DAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544444
No 176
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.88 E-value=12 Score=22.84 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023255 166 MAAIKAEIETERQEIHK 182 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~ 182 (285)
+.+|+.||-.|++|+.-
T Consensus 4 iaalkqeiaalkkeiaa 20 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 177
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=60.79 E-value=46 Score=24.34 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKA 98 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~a 98 (285)
...|.+.|..-+.+|.++-....-.......|-.||-...-|-.+|+.++...++
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 4566666666666777665544555555566666666666666666666655443
No 178
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.70 E-value=52 Score=24.87 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.0
Q ss_pred HHHhhhhHHH
Q 023255 108 YEKSLKLDAE 117 (285)
Q Consensus 108 ~~k~~kleae 117 (285)
+||..-||.+
T Consensus 22 IdKVR~LEqq 31 (93)
T 3s4r_A 22 IDKVRFLEQQ 31 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 179
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=60.64 E-value=39 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKD 165 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qk 165 (285)
..+.++..+-..+....+....+|..|+.++.++..+++.
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555556666666665555544443
No 180
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.57 E-value=23 Score=22.54 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
.|+...+++|.....+|..+|.+|.+-+.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 466777777777777777777777766544
No 181
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.55 E-value=16 Score=25.13 Aligned_cols=31 Identities=10% Similarity=0.344 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
.++..++.+..+|.....+|..+++.+.+.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554443
No 182
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=60.19 E-value=24 Score=25.41 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 142 KQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
...|..++..+..|+.-.++- =.|-.-|...+++|..||..+...++-|
T Consensus 8 ~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 8 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555555544332 4556666666666666666666666554
No 183
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=59.93 E-value=47 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
.+.+.|...|.-.+.|+.+|...++++++-
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~K 32 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSK 32 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777887777777665554
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.67 E-value=22 Score=33.81 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 133 ADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
.++..+.....+|..+++.++.++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~ 35 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKE 35 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334433333
No 185
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=58.56 E-value=43 Score=30.68 Aligned_cols=128 Identities=13% Similarity=0.253 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH---HHHHHhhhhHHHHHHHHH
Q 023255 47 LEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVR---ELYEKSLKLDAELRVIES 123 (285)
Q Consensus 47 Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r---~L~~k~~kleaelr~~e~ 123 (285)
+-.+|...|.+.+....+-+++.+++..+.|||+..+.-+.-....+.=.+---+.|-| +++|+- + .++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~-~-------~~~ 87 (302)
T 2y3a_B 16 VGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERF-R-------REG 87 (302)
T ss_dssp -----CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-H-------hcC
Confidence 34445555556666777778888888888888887776666655554422222111111 000000 0 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
-..|+..+..-.+.+....+.|-.-...++.||.--..|.-++ ..++.+++-++-.++.
T Consensus 88 ~~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~i---er~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 88 NEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI---DKRMNSLKPDLMQLRK 146 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhH---HhhhccCChHHHHHhh
Confidence 2346666666666666666666666666666666544443332 3444445545444444
No 186
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=58.23 E-value=1e+02 Score=27.50 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh------------hhhhhhchhhhHHHHHHHHhHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAI------------ECEKKNRASNHEQREIMEKNIISVAQQI 215 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~------------e~ekk~~~e~~eq~q~meknli~ma~e~ 215 (285)
+..++..++.++.+...++..| .|+. .-...++++|.||..-+..-+++
T Consensus 185 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~-~~~~~~~~~Q~le~~Rl~~lk~~ 245 (337)
T 2x3v_A 185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME-GMEQVFEQCQQFEEKRLVFLKEV 245 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554432 2222 23456677788877665555443
No 187
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.02 E-value=38 Score=30.52 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 023255 76 KQELSLAEQELRHL 89 (285)
Q Consensus 76 qqEL~laqhEL~~l 89 (285)
+.++..++.++.+.
T Consensus 90 ~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 90 KTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 188
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=57.83 E-value=1.2e+02 Score=28.06 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=14.1
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 023255 162 ESKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 162 d~qkl~aLkaEIe~LrqEl~ 181 (285)
++..++.|+++|+.++.++.
T Consensus 174 ~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 174 QGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TTCCHHHHHHHHHHHTGGGC
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 35567777777777777776
No 189
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.83 E-value=56 Score=24.34 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023255 170 KAEIETER 177 (285)
Q Consensus 170 kaEIe~Lr 177 (285)
...++.+.
T Consensus 71 ~~~~e~i~ 78 (107)
T 1fxk_A 71 QEKLETLQ 78 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 190
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.81 E-value=57 Score=24.40 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl 180 (285)
.+..+.+-+||..++-.+.++...|.....++.+-..++..++ .++..=.+||+.|+.++
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq---~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ---EQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHhhHHHHHHHHHHH
Confidence 4556778888888888888888888777776666665554433 23333344555555444
No 191
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.64 E-value=44 Score=23.03 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
..++.++..|...-.+|..+|..|+.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 192
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=57.46 E-value=28 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhh
Q 023255 145 MIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~r 184 (285)
+..+|...+.+|+-++.. +-.+.+|++|--.+|.|++--|
T Consensus 31 fekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 31 FEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 445677777777777777 7778999999999998887544
No 193
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=57.41 E-value=57 Score=24.30 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 134 DIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~Le 153 (285)
....|...+.+|..++..++
T Consensus 64 ~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 194
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=57.35 E-value=88 Score=26.43 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
.++..-...+..+.++..|-.+...+.+|++.-...+......
T Consensus 18 ~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ 60 (170)
T 3l4q_C 18 QLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNET 60 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4444455566677777788888888888888887777764433
No 195
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.23 E-value=32 Score=26.23 Aligned_cols=23 Identities=13% Similarity=-0.046 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHH
Q 023255 85 ELRHLSSVAASVKAERDAEVREL 107 (285)
Q Consensus 85 EL~~l~~~i~~~~ae~e~~~r~L 107 (285)
....|+..+...+..-+.+++.+
T Consensus 20 ~~~~LE~~l~e~E~~~~~e~~~~ 42 (95)
T 3mov_A 20 ESRACLERIQELEDLLAKEKDNS 42 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 196
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=56.89 E-value=8.4 Score=31.36 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 023255 145 MIKDLNEINGDLAKARDESKDMAAIKAEIETERQ 178 (285)
Q Consensus 145 L~aevq~LekDL~~~~~d~qkl~aLkaEIe~Lrq 178 (285)
|.++|+.|.+|+.....=..++..|+.+|+.+++
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544444333223333333333333333
No 197
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=56.82 E-value=15 Score=28.36 Aligned_cols=82 Identities=10% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESK-DMAAIKAEIETERQEIHKGR 184 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~q-kl~aLkaEIe~LrqEl~~~r 184 (285)
.++|++-.|...|+..++++ .+..+...+.. ...-+.|-.+.+.+..++..++.-++ -.+....++..+..++..--
T Consensus 4 ~I~d~A~eL~~~I~~s~ey~-~~~~a~~~i~~-d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p 81 (117)
T 2oee_A 4 NFYDVAYDLENALRGSEEFT-RLKNLYDEVNA-DESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHE 81 (117)
T ss_dssp CHHHHHHHHHHHHHTSHHHH-HHHHHHHHHHH-SHHHHHHHHHHHHHCC------------------CHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCH
Confidence 47888888888898888886 77777777754 34455666667777777777665454 23566677777777776655
Q ss_pred hhhhh
Q 023255 185 AAIEC 189 (285)
Q Consensus 185 a~~e~ 189 (285)
...+|
T Consensus 82 ~v~~y 86 (117)
T 2oee_A 82 KISQL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 198
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=56.22 E-value=1.4e+02 Score=28.57 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHH--------
Q 023255 44 LHHLEDRIAIQHSDIQSLLQ------DNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYE-------- 109 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~------dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~-------- 109 (285)
-+.||..++++...|..+.. ....+...+..|..-...-++.|..|.+.+.....+ +.-|++--.
T Consensus 44 H~~lE~eI~a~~~~v~~l~~~a~~~~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee-~~Wi~EKe~~~~s~d~g 122 (450)
T 3r6n_A 44 HRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSRE-IMWINDCEEEELLYDWS 122 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccC
Confidence 45566666666666655543 234455566666655555556666555544443333 122222110
Q ss_pred -HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 110 -KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 110 -k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
...-+.+-++..+.++.||..-+..+..+...-+.|.
T Consensus 123 d~l~dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li 160 (450)
T 3r6n_A 123 DKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLV 160 (450)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Confidence 1112344456677777777766666666666655554
No 199
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=56.08 E-value=1e+02 Score=26.78 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 139 CVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 139 ~~~rqeL~aevq~LekDL~~ 158 (285)
...++.+......+.+++.+
T Consensus 108 ~~~rK~~~~~~~k~~k~~~~ 127 (301)
T 2efk_A 108 KQERKMHFQEGRRAQQQLEN 127 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544
No 200
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=55.94 E-value=65 Score=24.52 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQ 66 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnq 66 (285)
...|+.......+|.+.+....
T Consensus 8 e~YE~df~~l~~~i~~kl~~i~ 29 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITSKIARVP 29 (102)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777777777777666533
No 201
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=55.92 E-value=32 Score=25.59 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
+..++..|..++.+++.-...+..+..+++
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 202
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=55.74 E-value=88 Score=25.99 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 135 IEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 135 iq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
........+.|+.++..++..|..+.-+.-.-..++++++.++.++..++.+.
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777777777777666666677788888877776665543
No 203
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.63 E-value=61 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
..++.++.||..||..++++.-....+...-..+-.||.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444444443
No 204
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=55.45 E-value=99 Score=26.47 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=13.5
Q ss_pred hchhhhHHHHHHHHhHHHHHH
Q 023255 193 NRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 193 ~~~e~~eq~q~meknli~ma~ 213 (285)
.-.+.++.+|.||...+..-+
T Consensus 196 ~~~~~~~~lQ~le~~R~~~lk 216 (276)
T 2v0o_A 196 KMTETAQKFQDIEETHLIHIK 216 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777877776665544
No 205
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.78 E-value=1.6e+02 Score=28.73 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
++-|+.-|..-=..|.-|......+..+|++||.|+.
T Consensus 120 i~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 120 IVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333224455555555555666666666654
No 206
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=54.49 E-value=91 Score=25.76 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 023255 150 NEINGDLAK 158 (285)
Q Consensus 150 q~LekDL~~ 158 (285)
+.+.+|+.-
T Consensus 69 ~~l~rdlea 77 (146)
T 2xnx_M 69 EAITREQEI 77 (146)
T ss_dssp TTHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444433
No 207
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.42 E-value=78 Score=24.95 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 101 DAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 101 e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
|-..|+|-.+..+|..| ++.+|.. +.....+....+..|.+++..+...
T Consensus 2 Ek~~rdL~~~~~~L~~E---~e~~k~K----------~~~~~~e~~~~~~~Lq~El~~lr~~ 50 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYE---VEALKEK----------LEHQYAQSYKQVSVLEDDLSQTRAI 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566774444444444 3333333 2333444445555666665555544
No 208
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.41 E-value=67 Score=24.24 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 023255 211 VAQQIERLQAEL 222 (285)
Q Consensus 211 ma~e~ekLrael 222 (285)
+..++++|+..|
T Consensus 96 l~~~l~~lk~~l 107 (117)
T 2zqm_A 96 LNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 209
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=53.71 E-value=1.7e+02 Score=28.75 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHH---------HHHHHHHHHHhH-HhhHHHHH
Q 023255 202 EIMEKNIISVAQ---------QIERLQAELANA-EKRARAAA 233 (285)
Q Consensus 202 q~meknli~ma~---------e~ekLrael~n~-e~r~~a~~ 233 (285)
+.|=+||..+.+ -+.+++.++-.+ +.--|.+-
T Consensus 504 ~dmAkNL~kfSKaFg~tgKvIka~DV~eK~kkG~ETGNWrPL 545 (602)
T 1cii_A 504 SDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTENWRPL 545 (602)
T ss_dssp HHHHHHHHHHHHHHTCCSCBCCHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCchhH
Confidence 447788877766 557777776555 44455554
No 210
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.62 E-value=26 Score=22.98 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 023255 200 QREIMEKNIISVAQQIER 217 (285)
Q Consensus 200 q~q~meknli~ma~e~ek 217 (285)
.+|++||.|..+..-+..
T Consensus 28 elqalekklaalksklqa 45 (48)
T 1g6u_A 28 ELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777666554433
No 211
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=53.62 E-value=78 Score=24.73 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHH
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEK 206 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~mek 206 (285)
=+..|...|+..++.+..++..++.-+..-.+..-..+++|+
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888888888777777777777777764
No 212
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=53.46 E-value=93 Score=25.54 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD----------ESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~----------d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
.++.+|..+..++..+... +...++.|+++..+... --.+...|...+..+=.+.+..+..|...-|
T Consensus 78 ~~k~~le~l~~~i~~~a~~---ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANK---VRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433 33445555555443311 1235577778888888888888887777766
Q ss_pred hchhhhHHHHHHHH
Q 023255 193 NRASNHEQREIMEK 206 (285)
Q Consensus 193 ~~~e~~eq~q~mek 206 (285)
..+. -|.+.+-.
T Consensus 155 ~~i~--Rq~~I~~~ 166 (180)
T 1s94_A 155 ARIK--RQMEITGR 166 (180)
T ss_dssp CC------------
T ss_pred HHHH--HHHHHhCC
Confidence 6664 35544433
No 213
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=53.24 E-value=1.5e+02 Score=28.87 Aligned_cols=18 Identities=11% Similarity=0.449 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 023255 208 IISVAQQIERLQAELANA 225 (285)
Q Consensus 208 li~ma~e~ekLrael~n~ 225 (285)
+....+.|.+|+..+..-
T Consensus 172 ~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 172 LENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444555555555443
No 214
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=52.82 E-value=77 Score=24.44 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 71 THVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 71 ~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
.+.-|+++|..++.-|+..+.....-...- +.-.+.+++|.. .-++-....++|..+|.
T Consensus 19 vT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV-----------------~tL~~SL~keka----q~q~qq~~v~elqgEI~ 77 (99)
T 3ni0_A 19 TTHLLQRQLTRTQDSLLQAETQANSCNLTV-----------------VTLQESLEKKVS----QALEQQARIKELENEVT 77 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 344577777777777776655544332221 111333333332 23333445667777777
Q ss_pred HHHHHHHHHh
Q 023255 151 EINGDLAKAR 160 (285)
Q Consensus 151 ~LekDL~~~~ 160 (285)
.|.+.|++..
T Consensus 78 ~Lnq~Lqda~ 87 (99)
T 3ni0_A 78 KLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666644
No 215
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.52 E-value=60 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 023255 166 MAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e 188 (285)
+...+.||..|+..++.++..++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 216
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=52.22 E-value=1.5e+02 Score=27.71 Aligned_cols=48 Identities=4% Similarity=0.133 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVA 93 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i 93 (285)
...++......+-..+-.+..+...+...-++-+++-..-+.+.+.++
T Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~ 177 (373)
T 3hhm_B 130 EYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQC 177 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555444455554444444444433
No 217
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.83 E-value=34 Score=20.88 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekD 155 (285)
++.++.+|++..|+|...+.+|+.-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666644
No 218
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=51.48 E-value=5.3 Score=32.54 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhch
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEKKNRA 195 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~ 195 (285)
.+-.||.+.+..+......++.|..++..+++++.-+.++ ...-..+...++.|+=+.+..++++.-|...-.
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp ---------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888889999999999999999999998888777 443455777889999999999999988876644
No 219
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=51.47 E-value=68 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 132 RADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 132 r~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+.++..+..+..+|..+++.+..++....
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666665555555433
No 220
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=50.93 E-value=1e+02 Score=25.34 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=9.8
Q ss_pred CCchHHHHHHHHHHHH
Q 023255 40 HSPSLHHLEDRIAIQH 55 (285)
Q Consensus 40 ~~~l~n~Lee~L~~q~ 55 (285)
..+.+..++.+|.+.+
T Consensus 41 k~~SleEIqkKLeAAE 56 (143)
T 3ryc_E 41 RDPSLEEIQKKLEAAE 56 (143)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3445667777776653
No 221
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.68 E-value=53 Score=28.33 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 46 HLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 46 ~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.+++++..-+..|+.+..+|..|..+.....+|+...+.+|+.++....
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677777777789999888888887777777777776666666665554
No 222
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=50.50 E-value=41 Score=24.99 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGDLAK 158 (285)
Q Consensus 144 eL~aevq~LekDL~~ 158 (285)
.+.+++..+..||.+
T Consensus 39 ~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 39 EKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 223
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=50.18 E-value=47 Score=32.03 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=50.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 110 KSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 110 k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.+.+|.++++.++....-+....+-++.......+...-+++|..=.-...++ ......+..||+.|+.||.+.-..
T Consensus 9 Ia~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian~ 88 (425)
T 3v47_C 9 IANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQ 88 (425)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888999999999999999999999999988888888877555554433 346789999999999999988754
Q ss_pred hh
Q 023255 187 IE 188 (285)
Q Consensus 187 ~e 188 (285)
-+
T Consensus 89 T~ 90 (425)
T 3v47_C 89 TQ 90 (425)
T ss_dssp CE
T ss_pred CC
Confidence 33
No 224
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.93 E-value=69 Score=24.10 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~r 142 (285)
+..|+.+|.+|..++..|....
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443
No 225
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.71 E-value=61 Score=22.37 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
.+..++.++..|.....+|..+|..|+.++
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 226
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=49.68 E-value=50 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=25.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 160 RDESKDMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 160 ~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
+.|.-.+..+..|++.|..+|.+++..-.++
T Consensus 32 rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 32 VEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557789999999999999999998765554
No 227
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.34 E-value=48 Score=21.82 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
++.++-+-.||...+..|.+++...++|..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555543
No 228
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=49.07 E-value=19 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
++...|..+|..++.+|..++.|+.|+++..-+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~ 43 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQT 43 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456788889999999999999999999998654443
No 229
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=48.94 E-value=1.3e+02 Score=25.75 Aligned_cols=16 Identities=0% Similarity=0.121 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 023255 207 NIISVAQQIERLQAEL 222 (285)
Q Consensus 207 nli~ma~e~ekLrael 222 (285)
++....+..-..|...
T Consensus 159 dv~~Fl~~y~~~R~~y 174 (192)
T 2p22_C 159 DLDQFIKNYLDIRTQY 174 (192)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 230
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.84 E-value=2e+02 Score=28.17 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 023255 48 EDRIAIQHSDIQSLLQDNQRLAATH 72 (285)
Q Consensus 48 ee~L~~q~~EIq~lL~dnqrla~~h 72 (285)
+.+|+.-+.|+.|.-..|+.+-+..
T Consensus 8 q~~la~yq~elarvqkana~aka~Y 32 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAY 32 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555555544444
No 231
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.60 E-value=25 Score=31.63 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
+.++.++......|....+++..++..|..++.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333333333333333333
No 232
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=48.19 E-value=33 Score=21.39 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
.|++..+++|.....+|+.+|.++.+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35666666666666666666666653
No 233
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=48.02 E-value=1.2e+02 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.5
Q ss_pred hhhchhhhHHHHHHHHhHHHHHHHH---HHHHHHHHhHH
Q 023255 191 KKNRASNHEQREIMEKNIISVAQQI---ERLQAELANAE 226 (285)
Q Consensus 191 kk~~~e~~eq~q~meknli~ma~e~---ekLrael~n~e 226 (285)
.....+++++.+.|-..+..|+.+. |.+=+||.++-
T Consensus 106 ~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~N 144 (186)
T 1oxz_A 106 EDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAN 144 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhh
Confidence 3466789999999999999999865 45556666554
No 234
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.84 E-value=51 Score=31.22 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
++..++.+..++....+++..+++.+.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 235
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.58 E-value=30 Score=31.23 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~ 158 (285)
++.++++++..+.+......++....++++.+
T Consensus 71 ~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 71 TLNTRKAALASYQAQLVARKTAYDVALSNYQR 102 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333333333333333
No 236
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=47.54 E-value=64 Score=28.67 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhh
Q 023255 168 AIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 168 aLkaEIe~LrqEl~~~ra~~e 188 (285)
.+++.++.++.++..++..++
T Consensus 132 ~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 132 TIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334444444445544444443
No 237
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.34 E-value=63 Score=21.82 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023255 133 ADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 133 ~eiq~l~~~rqeL~aevq~Le 153 (285)
.+++.+......+..++..+.
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 238
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=47.33 E-value=1.4e+02 Score=28.88 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh----HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 75 LKQELSLAEQELRHLSSVAASVK----AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 75 LqqEL~laqhEL~~l~~~i~~~~----ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
..+.|...+..|..+..++.+-+ +.-|. .-+..+.+|.++++.++....-+.....-++.......+...-++
T Consensus 13 ~~~~l~~~~~~l~~~~~~lSSG~rIn~asDDp---ag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lq 89 (494)
T 1ucu_A 13 TQNNLNKSQSALGTAIERLSSGLRINSAKDDA---AGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQ 89 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665311 00000 023456788888999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 151 EINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 151 ~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
++..-......+ ......+..||+.|+.||.+.-..
T Consensus 90 r~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ian~ 128 (494)
T 1ucu_A 90 RVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQ 128 (494)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888666555433 355788999999999999998764
No 239
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.13 E-value=85 Score=23.27 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhhHhH
Q 023255 84 QELRHLSSVAASVKAER 100 (285)
Q Consensus 84 hEL~~l~~~i~~~~ae~ 100 (285)
..++.++..+...++++
T Consensus 27 ~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 27 HQLRAMERSLEEARAER 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 240
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=47.06 E-value=78 Score=23.64 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
.++..++.++.+|++.--+...++..|-.| +=.+=.+|+++-++.-..-+++..++...
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 73 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKL 73 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777766 44456677777666555555555444433
No 241
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=46.81 E-value=82 Score=30.73 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
+|..+-.+-.++.....+|.++...+.+++
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 242
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.61 E-value=66 Score=21.88 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
+.++.++.+.-.+|....++...+|..|..+|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 243
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.46 E-value=1e+02 Score=23.92 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 112 LKLDAELRVIESMHAELDRVRADIEKLCV 140 (285)
Q Consensus 112 ~kleaelr~~e~lk~El~qlr~eiq~l~~ 140 (285)
+|++.....++.++.||..-..+++.+..
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777666666665555433
No 244
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=46.32 E-value=1.5e+02 Score=25.99 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEM-I----KDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL-~----aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ 183 (285)
+..++.+...|..+...+.+|....+.. . .+...+..+|.....+ .+.+..++..|+.|.+...+.
T Consensus 47 ~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 47 FNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666665554321 1 1122344555554444 444555666666665555444
No 245
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.89 E-value=94 Score=23.40 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
++....++..++.++..+.....++..+++.++.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444
No 246
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=45.82 E-value=85 Score=22.88 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
++..++.++.+|++.-.+...++..|..| +=.+=.+|+++-++.=..-+++..+++
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~ 59 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRK 59 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655 444566777766655444444444443
No 247
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.74 E-value=38 Score=21.16 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
|++..+++|.....+|..+|.+|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555555555555555544
No 248
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=45.56 E-value=39 Score=20.54 Aligned_cols=9 Identities=0% Similarity=0.416 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 023255 145 MIKDLNEIN 153 (285)
Q Consensus 145 L~aevq~Le 153 (285)
|..+|.+|+
T Consensus 20 leqevaqle 28 (33)
T 1fmh_A 20 LEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 249
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=45.32 E-value=2e+02 Score=28.84 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQ 178 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~Lrq 178 (285)
.+.+...|...+.+++++...++.=...++...+.|+.+..| .+++..+++.++.+..
T Consensus 632 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 690 (695)
T 2j69_A 632 SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLA 690 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345566666677777777777766666666666666666666 7777777777666654
No 250
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.18 E-value=95 Score=23.28 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
-+..-|.+|..|-.....++.+++..+.++..|..-+.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999998899999988888888866555
No 251
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.62 E-value=67 Score=21.33 Aligned_cols=35 Identities=9% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..+|++-.|++-+-+.|......|..+|.+++.++
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444444445555544443
No 252
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.61 E-value=22 Score=20.91 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l 89 (285)
|+-.....|+||+++...|+-.|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 45555566777777777666544
No 253
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.34 E-value=62 Score=30.78 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..|+.|+..++..++++....+++.++++.++..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555443
No 254
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.13 E-value=60 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
.|++..+++|.....+|..+|.+|..=+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 35666666666666666666666655443
No 255
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.99 E-value=20 Score=35.57 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhH
Q 023255 214 QIERLQAELANA 225 (285)
Q Consensus 214 e~ekLrael~n~ 225 (285)
.+..|+.||+.+
T Consensus 519 qL~~L~~el~~~ 530 (575)
T 2i1j_A 519 QLKALKQDLARS 530 (575)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 445556666554
No 256
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.90 E-value=1.2e+02 Score=24.13 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
.+.+.++|.+++.-+..+......+...+...++++..|+.|
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 131 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 344444444444444555555555555556666666666665
No 257
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=42.96 E-value=37 Score=24.82 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
+..++.+...|..+..++..+.....+++.+|+.|+
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 556666777777777777777777777777777776
No 258
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=42.82 E-value=1.8e+02 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023255 66 QRLAATHVALKQELSLAEQELRHLSSVAASV 96 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l~~~i~~~ 96 (285)
+++-..|.+|+.||..-+..+..+......+
T Consensus 44 ~~~~~kh~~le~El~a~e~~v~~v~~~g~~L 74 (283)
T 3pe0_A 44 TAKKESYSALMRELELKEKKIKELQNAGDRL 74 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445568888888888777776665555543
No 259
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=42.71 E-value=1.1e+02 Score=23.48 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 78 ELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 78 EL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
||..++..|...+..+.+-.... -|-+ |+ -..+-+.|...++...+.....+++..-|+.|.++|-
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~---Ar~l--------AE---qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKK---ARLL--------AE---QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHH---HHHH--------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccHHH---HHHH--------HH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57778887777777666444433 1112 11 2234455666666666666666666666666666654
No 260
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=42.07 E-value=18 Score=33.54 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=11.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 108 YEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEM 145 (285)
Q Consensus 108 ~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL 145 (285)
+|.+.++|+. +-...++|..++..+..+....++|
T Consensus 3 ~~~~~~lE~~---Il~~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 3 LEEIMKYEAS---ILTHDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp -------CTT---TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 3333444444444444443333333
No 261
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.40 E-value=1.1e+02 Score=25.95 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
||+|+.-+ ++.+..+.+++..++.++.........+..++.+.-.|
T Consensus 126 ireli~~A------ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 126 IRELICYC------LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56664444 45566666666666666655555555555554443333
No 262
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.40 E-value=82 Score=22.06 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023255 172 EIETER 177 (285)
Q Consensus 172 EIe~Lr 177 (285)
+|+.|+
T Consensus 52 ev~~Lr 57 (63)
T 2dgc_A 52 EVARLK 57 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 263
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.19 E-value=1.1e+02 Score=22.91 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
-+..-|.+|..|......|+.+++..+.++..|..-+.
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999998888866554
No 264
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=41.00 E-value=1e+02 Score=22.40 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
-+.++...+..-+.||.+|....-.|.+++-.-+ ||++ . ..+..-++..+..|-+.+...+++|.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYt-elnK---KLe~~~~~~q~s~~~l~k~~~d~~~~~~ 69 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYV-DITK---KLEDQNLNLQIKISDLEKKLSDANSTFK 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHhhhhhHHHHhhccccchhhH
Confidence 3555666666667777777766666666555433 1111 1 11223344445555555555555554
No 265
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=40.73 E-value=66 Score=24.64 Aligned_cols=24 Identities=21% Similarity=0.417 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
|+..|..||+.++.+|...++.|+
T Consensus 57 k~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 57 KLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554443
No 266
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=40.69 E-value=1e+02 Score=23.05 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
..+.++++|+.+-.+|-.|-+.|-.+..+|..+.++
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889888899999999998888888888764
No 267
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=40.67 E-value=6.2 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.9
Q ss_pred CcccccCCccCCCCCCCCCCCCCC
Q 023255 16 SQFTMSGRRVLREPPLSTRALPPQ 39 (285)
Q Consensus 16 rsvTleGD~ydpeG~LsGGs~p~~ 39 (285)
-.||-+||....+|.|.|||-...
T Consensus 35 invtwdgdtvtvegqleggslehh 58 (62)
T 2gjh_A 35 INVTWDGDTVTVEGQLEGGSLEHH 58 (62)
T ss_dssp CEEEECSSCEEEEEECCCCCCCCC
T ss_pred ceeEEcCCEEEEEeEEcCCccccc
Confidence 457889999999999999996543
No 268
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=40.67 E-value=2.4e+02 Score=26.56 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=14.5
Q ss_pred HHHHHH-HHHHHHHHHHhHHhh
Q 023255 208 IISVAQ-QIERLQAELANAEKR 228 (285)
Q Consensus 208 li~ma~-e~ekLrael~n~e~r 228 (285)
|..||. |++.|..++...+.+
T Consensus 95 ~~~~a~~e~~~l~~~l~~le~~ 116 (365)
T 1gqe_A 95 TFNEAVAELDALEEKLAQLEFR 116 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 788888888777754
No 269
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=40.33 E-value=1.6e+02 Score=24.43 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.7
Q ss_pred hhhchhhhHHHHHHHHhHHHHHHHH---HHHHHHHHhHH
Q 023255 191 KKNRASNHEQREIMEKNIISVAQQI---ERLQAELANAE 226 (285)
Q Consensus 191 kk~~~e~~eq~q~meknli~ma~e~---ekLrael~n~e 226 (285)
...-.+++++.+.|-..+..|+.+. |.+=+||..+-
T Consensus 90 ~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~N 128 (158)
T 1naf_A 90 EDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAN 128 (158)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhh
Confidence 3467789999999999999999865 45556666554
No 270
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=40.12 E-value=60 Score=27.80 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 104 VRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 104 ~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
+|+|++-. +..+..++.++.+++.+.++|.....+..++.
T Consensus 143 i~elid~~------ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 143 IRELICYC------LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55565555 67777888888888888888777776665544
No 271
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=40.09 E-value=50 Score=26.46 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~r 142 (285)
+..+..|+..+..+|..+...+
T Consensus 38 i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766654
No 272
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=39.80 E-value=92 Score=29.35 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 116 AELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 116 aelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
++++.++....-+.....-++.......+...-++++..-.-....+ ......+..||+.|+.||.+.-...+|
T Consensus 3 ~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~f 79 (398)
T 1io1_A 3 ANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQF 79 (398)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcee
Confidence 34566677777777788888888888888888777777555554433 345788999999999999986554433
No 273
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=39.67 E-value=54 Score=20.56 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
|++..+++|.....+|..+|.+|..
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4555556666666666666666543
No 274
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=39.59 E-value=1.3e+02 Score=23.29 Aligned_cols=89 Identities=7% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 70 ATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 70 ~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aev 149 (285)
+..++|..+......-+.-+..++.++...-+--.+.+-.....+-.--.+...+...|..-+.+++++.+...+|..++
T Consensus 13 ~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~ 92 (114)
T 2xzr_A 13 SKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKI 92 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666666655543333334222222211112233444444445555555555555555555
Q ss_pred HHHHHHHHH
Q 023255 150 NEINGDLAK 158 (285)
Q Consensus 150 q~LekDL~~ 158 (285)
=-|+.++.+
T Consensus 93 yh~ene~ar 101 (114)
T 2xzr_A 93 YHIENEIAR 101 (114)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544444
No 275
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=39.28 E-value=73 Score=20.27 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
+..++.+..+|.+-..+|..|...-.+|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56678888888888888887777666553
No 276
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.10 E-value=56 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
|++..+++|.....+|..+|.+|..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555666666666666666666553
No 277
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.09 E-value=10 Score=27.87 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
.......+|..|+.|+.+++..+++.||+..++-
T Consensus 60 ~~~~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~~ 93 (97)
T 2jn6_A 60 AAVSEAEQIRQLKKENALQRARTRHPAESCLEHH 93 (97)
T ss_dssp HHHHTHHHHHHHHHCGGGGGGTTSCCCGGGGTSC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999999999988763
No 278
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.08 E-value=52 Score=20.70 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq 150 (285)
....++||.++...-.-|..+|.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 279
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=39.08 E-value=37 Score=26.03 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQ-EMIKDLNEINGDLAK 158 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rq-eL~aevq~LekDL~~ 158 (285)
.+.+|+|...+-.+.......+. ++..+|.+--.||+.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~ 54 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQ 54 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 45556666666666555554443 555554444444443
No 280
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=38.97 E-value=23 Score=28.59 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 023255 148 DLNEINGDLA 157 (285)
Q Consensus 148 evq~LekDL~ 157 (285)
+|+.|+.+|.
T Consensus 24 ~~~~l~~~l~ 33 (182)
T 3kqg_A 24 KIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 281
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.58 E-value=1.6e+02 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
.|.+.-+..+|..+...+........+|..++..+...|..+.
T Consensus 79 ~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 79 ARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444444444455555444444444433
No 282
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=38.29 E-value=2.7e+02 Score=26.60 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=8.8
Q ss_pred hccHHHHHHHHHHHHHHHHhh
Q 023255 163 SKDMAAIKAEIETERQEIHKG 183 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ 183 (285)
..++..|...+..+......+
T Consensus 341 ~~~~~~L~~~~~~~~~~~~~l 361 (483)
T 2j1d_G 341 SFSFSDVEDLLAEAKDLFTKA 361 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 283
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=38.18 E-value=1.1e+02 Score=22.17 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=9.8
Q ss_pred hhhhhhchhhhHHHHH
Q 023255 188 ECEKKNRASNHEQREI 203 (285)
Q Consensus 188 e~ekk~~~e~~eq~q~ 203 (285)
.|||+.+.|.+=..||
T Consensus 43 ~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 43 AFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666655555
No 284
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.10 E-value=59 Score=20.40 Aligned_cols=24 Identities=4% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
|++..+.+|....++|..+|.+|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555566666666666665554
No 285
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=37.85 E-value=78 Score=23.55 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..+.++++|..+-.+|-.|-+.|-.+..+|..+.++-
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999998888653
No 286
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.83 E-value=46 Score=30.43 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023255 135 IEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 135 iq~l~~~rqeL~aevq~Lek 154 (285)
++.|....++|..+++.|++
T Consensus 187 ie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 287
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=37.22 E-value=71 Score=28.95 Aligned_cols=39 Identities=13% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
...+...|.++..++.++.....++...|+.|+.++++.
T Consensus 218 ~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 218 MGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666777777777777763
No 288
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=36.62 E-value=1.4e+02 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
++.++...+....+++.|.....++.=+-+.+.
T Consensus 21 v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~ 53 (585)
T 1y1u_A 21 FEELRLITQDTENELKKLQQTQEYFIIQYQESL 53 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 555565666666666666666555554444333
No 289
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.55 E-value=1e+02 Score=29.28 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq 150 (285)
++..+...+.+....|+.|..+++
T Consensus 32 ~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 32 ELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444433333
No 290
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.32 E-value=1.3e+02 Score=22.46 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 114 LDAELRVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 114 leaelr~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
|+.-|..++.+..+|.++..++..+...-++|..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666555555444443
No 291
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.30 E-value=1.1e+02 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEM 145 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL 145 (285)
+.++.+++.++......-++|
T Consensus 18 E~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 18 EREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 292
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=36.29 E-value=1.2e+02 Score=22.47 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARD-E-SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~-d-~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+.+..||.-|+.-..-+.++....+.+.--|+.+..-++.-.. | .-.|...+..++.-|.+|.+.|.-+
T Consensus 6 ~~I~~LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~dis~~l~~a~~~l~~sk~~~~~~~~~~ 76 (80)
T 3n27_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSDLEESKEWIRRSNQKL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhHhHHHhhHHHHHHHHHHHHHHh
Confidence 4466667677777777777777766666667666655554332 2 3345666777777777777776544
No 293
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=36.29 E-value=91 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.+.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999888888865
No 294
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=36.17 E-value=77 Score=23.32 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKL 138 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l 138 (285)
+..|+.+|.+|+.++..|
T Consensus 52 N~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 295
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.10 E-value=27 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=15.0
Q ss_pred HHHHHHhhhhhhhhhhhhchhhhHHHHHH
Q 023255 176 ERQEIHKGRAAIECEKKNRASNHEQREIM 204 (285)
Q Consensus 176 LrqEl~~~ra~~e~ekk~~~e~~eq~q~m 204 (285)
||.+.+...++|+.-|+-|+-+-+|.+++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555555555555544
No 296
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=35.99 E-value=1.3e+02 Score=27.15 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 98 AERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLA 157 (285)
Q Consensus 98 ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~ 157 (285)
.-.|.++..| -+.+..+..++.|+...++++....+.|.-+|++|.+=+.
T Consensus 212 ~yTd~k~~~l----------~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 212 TYTDQKMGEM----------NSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3355666667 6667888888888888888888888888888888876543
No 297
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=35.84 E-value=90 Score=24.85 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 67 RLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMI 146 (285)
Q Consensus 67 rla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~ 146 (285)
.|......|+.+|...+.+|+.+.+.+.--.... ...+..-|.+=....++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~---------------------------~~eL~~LI~KWr~asq~aa 56 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKNE---------------------------DKDLQTLIQKWKNAAQQAA 56 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777776665554222112 1223444666666666666
Q ss_pred HHHHHHHHH
Q 023255 147 KDLNEINGD 155 (285)
Q Consensus 147 aevq~LekD 155 (285)
.++....++
T Consensus 57 eeLf~~~~~ 65 (122)
T 3viq_A 57 EVLFKPMAE 65 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 298
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.68 E-value=1.3e+02 Score=22.23 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
.-.+-..|.+++.||..|.....++.-++..+.+...++-.|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556655555555555555555555544444444
No 299
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.66 E-value=1.5e+02 Score=22.76 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 023255 144 EMIKDLNEINGDLAKARD 161 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~ 161 (285)
-|..+..-|..+|..|..
T Consensus 75 ~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 75 LLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666777777764
No 300
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=35.50 E-value=68 Score=20.10 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.|+...+++|.....+|..+|.+|.+=
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666777777777777777777643
No 301
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=35.30 E-value=2.5e+02 Score=25.26 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHH
Q 023255 142 KQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERL 218 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekL 218 (285)
...|..++..|..-++.+... ..-+..|+.++..+-.-|.++-..++ .+..+-.+.+..=+.+..-|.+++.|
T Consensus 39 gr~L~~~~~~l~~~i~~L~~~~~~~~~l~~Le~~v~~ii~~L~~lg~~V~----~RL~L~~~~~~~~~~l~~aa~~l~eL 114 (276)
T 3i9y_A 39 GRVLFEQLESLLTHIKELGGESFDSKLLDALESNVQNVINNLAELGVTVE----RKLWLAKEIDTRVEEMRLLSEELEQL 114 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666544 33455666666655555555544443 34455566666677777788887665
Q ss_pred -HHHHHhHHhhHHH
Q 023255 219 -QAELANAEKRARA 231 (285)
Q Consensus 219 -rael~n~e~r~~a 231 (285)
|++++||+.++-|
T Consensus 115 ~~tqvaNa~t~~~A 128 (276)
T 3i9y_A 115 TRTQVQNTSTIAVA 128 (276)
T ss_dssp TCC-----------
T ss_pred HHHHHHHHHHHHHH
Confidence 8889888877654
No 302
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=35.15 E-value=19 Score=30.20 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.1
Q ss_pred hchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 023255 193 NRASNHEQREIMEKNIISVAQQIERLQAELANAEKRARAAA 233 (285)
Q Consensus 193 ~~~e~~eq~q~meknli~ma~e~ekLrael~n~e~r~~a~~ 233 (285)
+-+=+..|+....+.+-.+...|..|...|.+.++++++.+
T Consensus 52 tDAvN~~Ql~~~~~~v~n~~~~in~L~~~I~~~~k~a~aGi 92 (162)
T 3emo_C 52 TDAINGSQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGT 92 (162)
T ss_dssp CCBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHhhhhhhhhhhHHHHHHHHhhhhhhHHhHHHHH
Confidence 34446667776666666667788888888888888888766
No 303
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.00 E-value=38 Score=30.12 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
+...+.+..++.++..+.++ +.++++.|+.++.+-.++.-.. +.-+..|...+.+.+-.|+.
T Consensus 147 ~~~~e~~~~~i~ql~~En~~-------le~~Ie~Lk~e~~e~~te~~p~---~k~~~qly~~vt~i~w~~~~ 208 (250)
T 2ve7_C 147 LWQYKSSADKMQQLNAAHQE-------ALMKLERLEKEVDEDTTVTIPS---AVYVAQLYHQVSKIEWEYEC 208 (250)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-------HHHSCC-------------CTT---THHHHHHHHHHHCCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHHHHhhceeeccc
Confidence 44445555555555555444 4444444544444433331111 23334456666666665554
No 304
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=34.91 E-value=95 Score=24.10 Aligned_cols=37 Identities=3% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
..++.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 305
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.89 E-value=71 Score=20.05 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
|++..+++|.....+|..+|.+|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555555555555555554
No 306
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.71 E-value=1.3e+02 Score=21.91 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 44 LHHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 44 ~n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
...||.+++-|+.-|+ .|.+....-+++|...+..|+.|..++.+....
T Consensus 16 i~~LE~klAfqE~tIe-------eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 16 LVELETRLSFQEQALT-------ELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345555555544333 333444444578888888888887777765543
No 307
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.52 E-value=3.5e+02 Score=26.78 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHHHHH
Q 023255 165 DMAAIKAEIETERQE 179 (285)
Q Consensus 165 kl~aLkaEIe~LrqE 179 (285)
+...|..||+.|+..
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 308
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.44 E-value=51 Score=22.81 Aligned_cols=11 Identities=0% Similarity=0.247 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 023255 143 QEMIKDLNEIN 153 (285)
Q Consensus 143 qeL~aevq~Le 153 (285)
.+|..+|..|+
T Consensus 25 ~~Le~~v~~L~ 35 (62)
T 1jnm_A 25 ARLEEKVKTLK 35 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 309
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=34.32 E-value=1.1e+02 Score=22.85 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=18.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHhHHh
Q 023255 197 NHEQREIMEKNIISVAQQIERLQAELANAEK 227 (285)
Q Consensus 197 ~~eq~q~meknli~ma~e~ekLrael~n~e~ 227 (285)
.++++-..=+-....-+++..+|++|..+++
T Consensus 48 ~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 48 DYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555677888888876663
No 310
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=34.22 E-value=1.3e+02 Score=21.81 Aligned_cols=61 Identities=8% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANAE 226 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~e 226 (285)
+++|+++|.+|+..-...-..+=.---.=.-.++++-..=+.....-+++..+|++|+..+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444433332222334444444444445555667777888876655
No 311
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.94 E-value=86 Score=25.27 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQAELAN 224 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLrael~n 224 (285)
+..+..+.+...+-.+-+|+++|+.+++.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 312
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.90 E-value=2.5e+02 Score=24.83 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 023255 100 RDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQE 179 (285)
Q Consensus 100 ~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqE 179 (285)
+--++|..+..+...|.. +.+.+..-..+..+|.+|....- -+.++..|+++|.+...+. -..++.|..++.
T Consensus 88 ~~d~yR~~LK~IR~~E~s---vqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraEae~---lvaEAqL~n~kR- 159 (234)
T 3plt_A 88 KYDQYRVTLKSIRNIEAS---VQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAEAES---LVAEAQLSNITR- 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHh---hHHHHHHHHhHH-
Confidence 555678886666666655 55555555566666666654422 2467888888888877664 345567777765
Q ss_pred HHhhhhhhhhhhhhchhhhHH
Q 023255 180 IHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 180 l~~~ra~~e~ekk~~~e~~eq 200 (285)
++++.+|.+.=.+-.|.-|.
T Consensus 160 -~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 160 -EKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 45666776665555554444
No 313
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.79 E-value=1.8e+02 Score=23.13 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=16.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
...++.++..+..|..+|......|++
T Consensus 74 ~~l~k~Y~~~~keLd~~ik~qekiIdn 100 (119)
T 3etw_A 74 QELASKYEDALKKLEAEMEQQKAVISD 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666554
No 314
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.77 E-value=84 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
..++.|+..|....+.|-..+..+.+.|..+.
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444443
No 315
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.77 E-value=66 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
...+++||..|..+=+.|-.....+...++.++.|.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~ 43 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDT 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555566666555566666666666666666553
No 316
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=33.74 E-value=72 Score=27.74 Aligned_cols=46 Identities=9% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDM 166 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl 166 (285)
...+++++..+-++-..|.....++.++...|++.+.++..| ..+|
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~I 78 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERI 78 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhcc
Confidence 344555555555666666666666777777777777777777 4443
No 317
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.73 E-value=2e+02 Score=23.74 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDA----ELRVIESMHAELDRVRADIEKL 138 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~klea----elr~~e~lk~El~qlr~eiq~l 138 (285)
.+..+.......+..+|..+..-+......+..+..+ ++.+-....-||+ .-.+-+.+..+|..+...++..
T Consensus 14 e~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEee----L~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 14 SKNYHLENEVARLKKLLERAEERAELSEGKSAELEEE----LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443336666666665555555555543333 1212111111222 1234466777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHh
Q 023255 139 CVIKQEMIKDLNEINGDLAKARDE----SKDMAAIKAEIETERQEIHK 182 (285)
Q Consensus 139 ~~~rqeL~aevq~LekDL~~~~~d----~qkl~aLkaEIe~LrqEl~~ 182 (285)
...-....-.|..|++++.++..+ ..+...+..+++..-.+|..
T Consensus 90 E~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 90 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766533 22334445555544444443
No 318
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=33.71 E-value=1.2e+02 Score=21.54 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhh
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
|+++.-.+|.||.+++--++.||+-++.. ....|.+- ++.++.-+.+.|.-|
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~l--l~a~k~aikkqr~~i 58 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLL--LEAMKVAVRKQRKKI 58 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHH--HHHHHHHHHHHHHHH
Confidence 44555667778888888888888877765 34444432 344554555444443
No 319
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.68 E-value=89 Score=22.59 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 023255 123 SMHAELDRVRAD 134 (285)
Q Consensus 123 ~lk~El~qlr~e 134 (285)
.+..++..++.+
T Consensus 51 ~L~~~~~~l~~e 62 (83)
T 1nkp_B 51 YMRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 320
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.56 E-value=1.2e+02 Score=25.01 Aligned_cols=59 Identities=7% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccH-HHHHHHH-----HHHHHHHHhhhhhhhhhhhhchhhhHH
Q 023255 142 KQEMIKDLNEINGDLAKARDESKDM-AAIKAEI-----ETERQEIHKGRAAIECEKKNRASNHEQ 200 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d~qkl-~aLkaEI-----e~LrqEl~~~ra~~e~ekk~~~e~~eq 200 (285)
.++|...+..++++|..+.-..+++ .+.+.-- -..++.+...+..|+.||..+.+...+
T Consensus 31 ~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~ 95 (150)
T 4dci_A 31 EREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRN 95 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766554443 2222100 123455667777777777655544433
No 321
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.38 E-value=3.1e+02 Score=27.92 Aligned_cols=26 Identities=46% Similarity=0.442 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECE 190 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~e 190 (285)
++..|+.|+..+++++...++..+.|
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (854)
T 1qvr_A 431 RLKAIEAEIAKLTEEIAKLRAEWERE 456 (854)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 322
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.82 E-value=1.5e+02 Score=21.92 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
-.++..+.++++|++.|..-.+||..=-+.|..=|.++..+ -..|...|+.|+.....+..
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E---~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE---VAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888887777777766555554444443322 23445555555555444443
No 323
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.46 E-value=1.5e+02 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
-++|++++.....+.-++|+.....+
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l 56 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTL 56 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666655555443
No 324
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.30 E-value=83 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
|++..+++|.....+|..+|.+|..
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4555556666666666666666543
No 325
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=32.13 E-value=3.9e+02 Score=26.61 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHH
Q 023255 166 MAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQI 215 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ 215 (285)
..++++.++.|++-.......+ +|...+.+.++.++.+=.+.-.++.++
T Consensus 603 ~~~~~~~~~~l~~~~~~i~~r~-~e~~~rp~~~~~~~~~~~~~~~~~~~~ 651 (675)
T 3d2f_A 603 KAKYIAKYEELASLGNIIRGRY-LAKEEEKKQAIRSKQEASQMAAMAEKL 651 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444333322 566667777777666655555555544
No 326
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.95 E-value=1.3e+02 Score=20.84 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
.++.++..|.....+|..+|..|.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 327
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.91 E-value=1.4e+02 Score=21.19 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 127 ELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 127 El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
+|.++...|.++....-.+..++.....+|.+.+.+
T Consensus 5 ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~e 40 (73)
T 3htk_B 5 KIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKE 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666665544
No 328
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.85 E-value=1.2e+02 Score=20.73 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
..++.++.+++.++......-++|..---+|+.|+
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555555544444444444333444333
No 329
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=31.39 E-value=2.2e+02 Score=23.40 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 64 DNQRLAATHVALKQELSLAEQELRHLSS 91 (285)
Q Consensus 64 dnqrla~~h~~LqqEL~laqhEL~~l~~ 91 (285)
.-+.+...|..++.+|......+..+..
T Consensus 47 ~ve~ll~~H~~l~~ei~~~~~~~~~~~~ 74 (218)
T 3fb2_A 47 GAEALLERHQEHRTEIDARAGTFQAFEQ 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556667788888888776665655543
No 330
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.07 E-value=1.9e+02 Score=22.60 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 66 QRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
+.|-+......++|..+.+.|.-.....+..+-+
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDe 71 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDD 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3333444445578888888888777777766555
No 331
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.92 E-value=2e+02 Score=22.86 Aligned_cols=47 Identities=4% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------HHHHHHHHHHHHHHH
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKD-------MAAIKAEIETERQEI 180 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d~qk-------l~aLkaEIe~LrqEl 180 (285)
.++.+.....+|..-|..++++-.+|+-+..- +.+++.+|..|+.++
T Consensus 75 ~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 75 GLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555666677777777544333 444455555554443
No 332
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=30.89 E-value=1.2e+02 Score=23.00 Aligned_cols=35 Identities=6% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.+.++.+|..+-.+|-.|-+.|-.+..+|..+.++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999888888765
No 333
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=30.82 E-value=1.3e+02 Score=20.78 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 64 dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
+..+|.++--+|+.++.-.++|...+...+.
T Consensus 4 eEKSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 4 GSKSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988776
No 334
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.79 E-value=1.2e+02 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+++.|..++.+--+|....|.|..-|..+..++.++.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 4445555555544444444444444444444444443
No 335
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.78 E-value=69 Score=23.21 Aligned_cols=26 Identities=4% Similarity=-0.051 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
.++.+++.+.....+|..+...|++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333333
No 336
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=30.54 E-value=1.9e+02 Score=28.53 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
+..+-++..+-.++..++++|.+.+..++.+|..+.+
T Consensus 33 vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 33 VDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666777777777888888887776644
No 337
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.21 E-value=1.9e+02 Score=22.38 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE 162 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d 162 (285)
+.+++.|+..|+...+.+-.+...=.+++.+|-..
T Consensus 44 lhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa 78 (101)
T 4aj5_1 44 LYDLHSEVQTLKDDINILLDKARLENQEGIDFIKA 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456666666666666666665556666665543
No 338
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=29.93 E-value=4.1e+02 Score=26.14 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh-hhHHHHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS-NHEQREIM 204 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e-~~eq~q~m 204 (285)
.|+.-|..-++.+....++=..+++.|.+-|.+-..+ +-..=.+=|+.+|+.+.-++.+||-|+.+-.| -++|.=.|
T Consensus 146 ~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~--Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dm 223 (526)
T 3iyk_A 146 KQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGE--RTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGM 223 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 3555566666666666666666666666666653332 22233445778888888889999999877544 34444333
No 339
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=29.85 E-value=3.2e+02 Score=24.77 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHH
Q 023255 140 VIKQEMIKDLNEINGDLAKARDE---SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIE 216 (285)
Q Consensus 140 ~~rqeL~aevq~LekDL~~~~~d---~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~e 216 (285)
.....|..++..|..-++.+... ...+..|..+| ...=+...--=+.+..+-.+.+..=+.+..-+.+++
T Consensus 50 ~~gr~L~~~~~~l~~~i~~L~~~~~~~~~l~~l~~~I-------~~~L~~lg~~V~~RL~L~~~~~~~~~~l~~aa~~l~ 122 (290)
T 3i9w_A 50 AQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEI-------SRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIA 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777777777777777655 23344444433 322233333334556677777888888888888887
Q ss_pred HH-HHHHHhHHhhHHHHH
Q 023255 217 RL-QAELANAEKRARAAA 233 (285)
Q Consensus 217 kL-rael~n~e~r~~a~~ 233 (285)
.| |++++||+.++-|..
T Consensus 123 eL~~tqvaNa~t~~~A~l 140 (290)
T 3i9w_A 123 RLAQGQANNATTSAGATQ 140 (290)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 65 999999998876654
No 340
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.77 E-value=3.1e+02 Score=24.60 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=6.8
Q ss_pred CceEEEeecCC
Q 023255 5 GNSLHTTLHNH 15 (285)
Q Consensus 5 G~tlivtf~p~ 15 (285)
|..+|||||..
T Consensus 119 ~~~~lITv~~~ 129 (339)
T 4ev6_A 119 KNNLLLTIHSD 129 (339)
T ss_dssp ETTEEEEEESS
T ss_pred ECCeeEEeecC
Confidence 44455777766
No 341
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.67 E-value=1e+02 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 023255 148 DLNEINGDLAKAR 160 (285)
Q Consensus 148 evq~LekDL~~~~ 160 (285)
+|+.|...+.+|+
T Consensus 40 eI~eLr~~LdK~q 52 (67)
T 1zxa_A 40 EIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 342
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=29.66 E-value=3.2e+02 Score=25.26 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhh----hHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 147 KDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRASN----HEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 147 aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~----~eq~q~meknli~ma~e~ekLrael 222 (285)
.++.+|..||.-|.+-..|+.-+++|+.--.+.+.+. |+-+..+. -+..+.||.++=-+++=|+||+.+|
T Consensus 238 ~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~------e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~L 311 (323)
T 2p01_A 238 KELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHA------ESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDL 311 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655322222211 11112222 2446899999999999999999999
Q ss_pred Hh
Q 023255 223 AN 224 (285)
Q Consensus 223 ~n 224 (285)
..
T Consensus 312 e~ 313 (323)
T 2p01_A 312 SG 313 (323)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 343
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.65 E-value=2e+02 Score=22.45 Aligned_cols=63 Identities=6% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccHHHHHHHHHHHHHHHHhhhh
Q 023255 120 VIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-----SKDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-----~qkl~aLkaEIe~LrqEl~~~ra 185 (285)
.++.+..||.+.+. +|...+|.|....+..++|=.+.+.. .+-+..|+..|..|++.+..+.+
T Consensus 36 ~ieeLQ~Ei~~~E~---QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQ---QLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556555544 45555666655555555543332221 33356677777777766655544
No 344
>1pya_A Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_A 1ibv_A* 1ibu_A 1ibt_A* 1ibw_A*
Probab=29.59 E-value=15 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=17.8
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCCCcc
Q 023255 238 VNPSTSYAASYGNPDPGFGGSLYADPYSMH 267 (285)
Q Consensus 238 ~~~~~~y~~~~gn~~~~~~~~~y~~~y~~~ 267 (285)
-+|+.-|...||||+ ++|.||..-
T Consensus 17 i~p~~~~c~GY~~pG------a~G~GYvs~ 40 (81)
T 1pya_A 17 ISPYKQWTRGYMEPG------NIGNGYVTG 40 (81)
T ss_dssp EESSSSCBEETTCTT------CBSSCEEEC
T ss_pred cCCchhhccccCCCC------ccccceEEE
Confidence 367789999999995 266677644
No 345
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=29.45 E-value=2.3e+02 Score=22.96 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 64 DNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 64 dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
.-+.+...|..++.+|...+..+..+.....
T Consensus 34 ~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~ 64 (214)
T 1s35_A 34 EAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456666777777777777666666554443
No 346
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.45 E-value=1.4e+02 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIK 142 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~r 142 (285)
++-+|.+|.|=-.+|.|++.-....
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 6777777777777766666543333
No 347
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=29.44 E-value=2.1e+02 Score=22.99 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHHhh
Q 023255 128 LDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEI-ETERQEIHKG 183 (285)
Q Consensus 128 l~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEI-e~LrqEl~~~ 183 (285)
|.++..++.++.....+|..+|.+|-+++..-+....-+..+-+.| ..+..++.++
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~C 60 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 4445555556666666666666666666655222123444554444 4555555443
No 348
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.40 E-value=93 Score=20.90 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023255 145 MIKDLNEINGDLAKA 159 (285)
Q Consensus 145 L~aevq~LekDL~~~ 159 (285)
|..+|..+++|+..+
T Consensus 36 lekdianlekdianl 50 (56)
T 3he4_A 36 LEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 349
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=29.35 E-value=3.9e+02 Score=26.07 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 26 LREPPLSTRALPPQHSPSLHHLEDRIAIQHSDIQSL--LQDNQRLAATHVALKQELSLAEQELRH 88 (285)
Q Consensus 26 dpeG~LsGGs~p~~~~~l~n~Lee~L~~q~~EIq~l--L~dnqrla~~h~~LqqEL~laqhEL~~ 88 (285)
.|+|+.-+|+.. .. ...||++|-.-+..|+.+ +.. .+...+|..|++.+..--+||-.
T Consensus 7 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~e~~~ 66 (526)
T 2de0_X 7 IPEGPIDQGPAI--GR--VRVLEEQLVKAKEQIENYKKQTR-NGLGKDHEILRRRIENGAKELWF 66 (526)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCccc--hh--HhhHHHHHhhhhhhhhHHhcccC-CCCChHHHHHHHHHHHhHHHHHH
Confidence 689998888721 11 346788776666654422 222 33456888888888877777744
No 350
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.26 E-value=1.7e+02 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
-+.++.+-.|=.+|..--..|...+.+|-++|..|+.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E 45 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCE 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555555666666666666666544
No 351
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=28.99 E-value=1.5e+02 Score=23.81 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=46.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEK 137 (285)
Q Consensus 58 Iq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~ 137 (285)
|..+..+.-+.|+-+ -+=+..+..+|+- -+...+=..|++| +++.+..++.+.+...+...
T Consensus 10 id~L~leFAKrAa~f---NnW~e~A~EdL~D------~~~v~sleEI~~L----------~~~He~F~~~L~~a~~e~~~ 70 (129)
T 1wlx_A 10 IDQLHLEYAKRAAPF---NNWMESAMEDLQD------MFIVHTIEEIEGL----------ISAHDQFKSTLPDADREREA 70 (129)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHS------CCCCCSHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH---HHHHHhHHHHhcc------chhhccHHHHHHH----------HHHHHHHHHhHHHHHHHHHH
Confidence 344444444444433 3445566666552 2223343456667 88899999999999998888
Q ss_pred HHHHHHHHHHHHHH
Q 023255 138 LCVIKQEMIKDLNE 151 (285)
Q Consensus 138 l~~~rqeL~aevq~ 151 (285)
+....++|...+++
T Consensus 71 i~~i~~el~~~~~~ 84 (129)
T 1wlx_A 71 ILAIHKEAQRIAES 84 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665544
No 352
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.84 E-value=1.4e+02 Score=23.41 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 88 HLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEIN 153 (285)
Q Consensus 88 ~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~Le 153 (285)
+-...-..++--+-.+=|.| +..++.+...|..+..++..++....+|+.+|+.++
T Consensus 29 l~~~i~GTNPNGsTVEERGl----------~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 29 LNTLVNGTNPNGSTVEERGL----------TNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp HHHHHHCSCTTCSSHHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCCCCeeecccc----------chhhhccccchhhhheeecccccchhhhhhhhHHHH
Confidence 33344455666676777888 888888888888888888888888888888888775
No 353
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.65 E-value=1.1e+02 Score=21.33 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=29.8
Q ss_pred hhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 185 AAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 185 a~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael 222 (285)
-.+.--|-.|..++.+.+-+|..-.-|-+||+.|++=|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888888888888999999998866
No 354
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=28.49 E-value=1.1e+02 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 66 QRLAATHVALKQELSLAEQELRHL 89 (285)
Q Consensus 66 qrla~~h~~LqqEL~laqhEL~~l 89 (285)
.+.+.....|+.|+...+.|+..+
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHhHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555443
No 355
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.32 E-value=1.5e+02 Score=23.66 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH---------------------------------
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI--------------------------------- 180 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl--------------------------------- 180 (285)
+++++....+.|..+++.+...+..++.-..++++.+.-++.+..--
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g 89 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSG 89 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCC
Q ss_pred ----HhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 023255 181 ----HKGRAAIECEKKNRASNHEQREIMEKNIISVAQQIERLQAELANA 225 (285)
Q Consensus 181 ----~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e~ekLrael~n~ 225 (285)
.....|+++-++.-...-.++..+++++......+..+...|...
T Consensus 90 ~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 90 YAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.32 E-value=2.2e+02 Score=22.51 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLC 139 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~ 139 (285)
.+++.-|+..++.+...+.
T Consensus 34 sDPL~~ELeRLr~~~d~~~ 52 (115)
T 3vem_A 34 NDPFLHELEKLRRESENSK 52 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4666667766666555543
No 357
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=28.29 E-value=47 Score=22.17 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 023255 174 ETERQEIH 181 (285)
Q Consensus 174 e~LrqEl~ 181 (285)
+.+++|+.
T Consensus 33 eAi~~El~ 40 (45)
T 1use_A 33 EAFVQELR 40 (45)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 358
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=28.26 E-value=3.1e+02 Score=24.18 Aligned_cols=27 Identities=4% Similarity=0.004 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023255 196 SNHEQREIMEKNIISVAQQIERLQAEL 222 (285)
Q Consensus 196 e~~eq~q~meknli~ma~e~ekLrael 222 (285)
.++-+.++.|+.|......|..|+..-
T Consensus 154 ~LLkkh~~le~~l~~~~~~i~~L~~~a 180 (283)
T 3pe0_A 154 DLLQDAQDEKEQLNEYKGHLSGLAKRA 180 (283)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888888888888764
No 359
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.11 E-value=3.9e+02 Score=25.30 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 023255 63 QDNQRLAATHVALKQELSLAEQEL 86 (285)
Q Consensus 63 ~dnqrla~~h~~LqqEL~laqhEL 86 (285)
.+...+......|..+-+.....|
T Consensus 39 ~el~~f~keRa~iE~eYAk~L~kL 62 (486)
T 3haj_A 39 SDLMNCLHERARIEKAYAQQLTEW 62 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 360
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=27.98 E-value=1.4e+02 Score=20.97 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~e 214 (285)
....+|..+|..++.|+-.+|..-- . +..++..+.+..-+++..+-..
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~a--t-gql~n~~~ir~vRr~IARi~Tv 56 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLA--M-GQLKNTSLIKLTKRDIARIKTI 56 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH--H-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--c-cCccCcHHHHHHHHHHHHHHHH
Confidence 3457788888888888888884433 2 6678888888888887776553
No 361
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.95 E-value=2.9e+02 Score=25.34 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 137 KLCVIKQEMIKDLNEINGDLAK 158 (285)
Q Consensus 137 ~l~~~rqeL~aevq~LekDL~~ 158 (285)
.+...+++|..+++++++---.
T Consensus 21 ~lr~~~eql~~~i~~L~~~ap~ 42 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQRAPV 42 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHChH
Confidence 3444444455555555443333
No 362
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.72 E-value=2.4e+02 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023255 58 IQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAA 94 (285)
Q Consensus 58 Iq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~ 94 (285)
+..-|.+|..|......|+.|++..+.++..|..-+.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777887777777777777777777777655544
No 363
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=27.56 E-value=2.1e+02 Score=23.99 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 023255 128 LDRVRADIEKL 138 (285)
Q Consensus 128 l~qlr~eiq~l 138 (285)
+..+..++..+
T Consensus 87 ~~~~~~~i~~~ 97 (279)
T 3c98_B 87 LEELMSDIKKT 97 (279)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 364
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.52 E-value=1.6e+02 Score=20.70 Aligned_cols=7 Identities=0% Similarity=-0.016 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023255 133 ADIEKLC 139 (285)
Q Consensus 133 ~eiq~l~ 139 (285)
.+|.++.
T Consensus 56 ~Ei~elr 62 (77)
T 3trt_A 56 QESTEYR 62 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 365
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.51 E-value=2.2e+02 Score=22.11 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 123 SMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 123 ~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
.|+.-..+++.-|..|...+=+|...|..-..||+++
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL 82 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 3444444455555555555555555554444444443
No 366
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.33 E-value=1.4e+02 Score=25.56 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q 023255 215 IERLQAELAN 224 (285)
Q Consensus 215 ~ekLrael~n 224 (285)
++.++..+.+
T Consensus 121 l~~a~~~l~~ 130 (277)
T 2f1m_A 121 VETARINLAY 130 (277)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 3344444433
No 367
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=26.80 E-value=2.6e+02 Score=22.76 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI 141 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~ 141 (285)
+.+...+......++..|......+..|......+-... - -.....++.+|..+..++..+...
T Consensus 1 ~~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~------~----------~~~~~~~~~~i~~l~~~i~~~~~~ 64 (196)
T 1fio_A 1 MHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEV------N----------EEQASHLRHSLDNFVAQATDLQFK 64 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------C----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C----------hhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchh
Q 023255 142 KQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIECEKKNRAS 196 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e 196 (285)
.+. .++.|.+..........+...|..++..+-.+.+.+...|-..-|...+
T Consensus 65 ~~~---~lk~l~~~~~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~ 116 (196)
T 1fio_A 65 LKN---EIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHH---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 368
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.69 E-value=3e+02 Score=23.56 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 125 HAELDRVRADIEKLCVIKQEMIKDL 149 (285)
Q Consensus 125 k~El~qlr~eiq~l~~~rqeL~aev 149 (285)
++.+.+.+..|++|..+-..|..++
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333
No 369
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.61 E-value=1.8e+02 Score=24.90 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 023255 76 KQELSLAEQELRHL 89 (285)
Q Consensus 76 qqEL~laqhEL~~l 89 (285)
+.+|..++.++.+.
T Consensus 73 ~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 73 QAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 370
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=26.58 E-value=2.5e+02 Score=22.79 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhh
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDES--KDMAAIKAEIETERQEIHKGRA 185 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~--qkl~aLkaEIe~LrqEl~~~ra 185 (285)
+++.+++..++++...|..+.+-+...- + +.+..+...|=.+|+-+.....
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aH---------s~~sslD~vD~~Il~Ak~aL~evt~ 111 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLAT---------GAASTSDQVDSKIFALKSRMEKIHT 111 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCC---------SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeec---------CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555544322111 3 5555555555555555444443
No 371
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.39 E-value=1.8e+02 Score=21.87 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcc--HHHHHHHHHHHHH
Q 023255 134 DIEKLCVIKQEMIKDLNEINGDLAKARDE-SKD--MAAIKAEIETERQ 178 (285)
Q Consensus 134 eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qk--l~aLkaEIe~Lrq 178 (285)
+..++.+..+.|.+++..+++++.++.+. ... ...++.=|+.|+.
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
No 372
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=26.38 E-value=5.3e+02 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhH
Q 023255 80 SLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLD 115 (285)
Q Consensus 80 ~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kle 115 (285)
=+.+|.|......+...=.+.=+++-.++-.++.-|
T Consensus 77 fLlq~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E 112 (683)
T 1yvl_A 77 FLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEE 112 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 466777777777766543333334444444443333
No 373
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=26.38 E-value=3e+02 Score=23.38 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH
Q 023255 130 RVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI 173 (285)
Q Consensus 130 qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI 173 (285)
+.-..........+.|..+|.++..+|..+.-+ -+.-+--+.||
T Consensus 114 ~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~~~ 158 (201)
T 3u0c_A 114 KQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEI 158 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHHHH
Confidence 333444455566677777777777777777766 33333334444
No 374
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.34 E-value=1.6e+02 Score=20.17 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 023255 45 HHLEDRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAE 83 (285)
Q Consensus 45 n~Lee~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laq 83 (285)
..++..|.....++.+.+.+.+.|-+.-.+|..|++.-.
T Consensus 10 ~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 10 EELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356777777777788888887777777777777665443
No 375
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.30 E-value=84 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=13.7
Q ss_pred HHHHHhhh-hccHHHHHHHHHHHHHHHH
Q 023255 155 DLAKARDE-SKDMAAIKAEIETERQEIH 181 (285)
Q Consensus 155 DL~~~~~d-~qkl~aLkaEIe~LrqEl~ 181 (285)
||+.-+.+ .++|..|...++.|...++
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 4455555566666555544
No 376
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=26.25 E-value=1.1e+02 Score=23.94 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 023255 143 QEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 143 qeL~aevq~LekDL~~~~ 160 (285)
+.|..+|+.++.+|.+++
T Consensus 99 ~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 99 KALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555555553
No 377
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.79 E-value=2.8e+02 Score=24.29 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
..+...+|+++..++..+++...+++.+++++....+.+++++
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888877777777777666655543
No 378
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.68 E-value=2e+02 Score=21.22 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 115 DAELRVIESMHAELDRVRADIEKLCVI 141 (285)
Q Consensus 115 eaelr~~e~lk~El~qlr~eiq~l~~~ 141 (285)
+.-|..++.+..+|.++..+|..|...
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666655554443
No 379
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.62 E-value=2.6e+02 Score=22.38 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
+|++-..+-..+.++.+++...--|+..++.+. ++ ..-|..|..++.++++-.-.-|.+++|--
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~a-------N~T~~aL~~L~~q~Tslr~~~LQNRraLD~Ll 87 (125)
T 4g2k_A 23 IEEILSKIYHIENEIARIKKLIGNLVSRLRRLA-------NQTAKSLELLLRVTTEERTFSLINRHAIDFLL 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555553 33 67789999999999999999999999865
No 380
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=25.50 E-value=3.6e+02 Score=24.05 Aligned_cols=187 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCch----------HHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHH
Q 023255 28 EPPLSTRALPPQHSPS----------LHHLEDRIAIQHS---DIQSLLQDNQRLAATHVALKQELSLAEQ-------ELR 87 (285)
Q Consensus 28 eG~LsGGs~p~~~~~l----------~n~Lee~L~~q~~---EIq~lL~dnqrla~~h~~LqqEL~laqh-------EL~ 87 (285)
+++|+|.+...++.+. +..|..++..-.. +|..++.+--.+-..+..==+.|...-+ +..
T Consensus 5 ~~~m~~~~~~~~~~~~f~~~FW~~~g~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~~~~e~g 84 (350)
T 3aco_A 5 SSGMSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYG 84 (350)
T ss_dssp ------------------CCTTSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCH
T ss_pred CCCCCCCcccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHhhhhHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 88 HLSSVAASVKAERDAEVRELYEKSLKLDAEL--------------------RVIESMHAELDRVRADIEKLCVIKQEMIK 147 (285)
Q Consensus 88 ~l~~~i~~~~ae~e~~~r~L~~k~~kleael--------------------r~~e~lk~El~qlr~eiq~l~~~rqeL~a 147 (285)
-+......+..+.|........=+..|..++ +....+..++..++....+.......+..
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhh-----------ccHHHHHHHHHHHHHHHHhhhhh------------hhhhhhhchhhhHHHHHH
Q 023255 148 DLNEINGDLAKARDES-----------KDMAAIKAEIETERQEIHKGRAA------------IECEKKNRASNHEQREIM 204 (285)
Q Consensus 148 evq~LekDL~~~~~d~-----------qkl~aLkaEIe~LrqEl~~~ra~------------~e~ekk~~~e~~eq~q~m 204 (285)
.-...-+|+..+.... .++..++..++.++++...++.. -+|+.. -...++++|.|
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~-~~~~~~~~Q~l 243 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN-MEQVFEQCQQF 243 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHhHHHHHHHH
Q 023255 205 EKNIISVAQQI 215 (285)
Q Consensus 205 eknli~ma~e~ 215 (285)
|..-+..-+++
T Consensus 244 ee~Rl~~lk~~ 254 (350)
T 3aco_A 244 EEKRLRFFREV 254 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 381
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=25.32 E-value=3.4e+02 Score=23.66 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 023255 49 DRIAIQHSDIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAEL 128 (285)
Q Consensus 49 e~L~~q~~EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El 128 (285)
+.|...-.....++.+...+..+...|..+-+..-..|..--........+. ..++.=.
T Consensus 32 ~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~e~---------------------gtl~~aw 90 (312)
T 3abh_A 32 KRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQY---------------------GTVEKAW 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC---------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---------------------ChHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh---------hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhh
Q 023255 129 DRVRADIEKLCVIKQEMIKDLN-EINGDLAKARDE---------SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNH 198 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq-~LekDL~~~~~d---------~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~ 198 (285)
..+..++..+......+...+. .+...|..|..+ -.+-+.+..+++.+.+.+......++--|+.+....
T Consensus 91 ~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 170 (312)
T 3abh_A 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAAC 170 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHH-------HHHHHHHHHHHhHHhhHHHH
Q 023255 199 EQREIMEKNIISVA-------QQIERLQAELANAEKRARAA 232 (285)
Q Consensus 199 eq~q~meknli~ma-------~e~ekLrael~n~e~r~~a~ 232 (285)
......+..+.... ++++|++.-+..+..-+..+
T Consensus 171 ~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a 211 (312)
T 3abh_A 171 KEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 211 (312)
T ss_dssp HHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHH
No 382
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=25.17 E-value=8.4 Score=29.08 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=14.0
Q ss_pred CcccccCCccCCCCCCCCCCCCC
Q 023255 16 SQFTMSGRRVLREPPLSTRALPP 38 (285)
Q Consensus 16 rsvTleGD~ydpeG~LsGGs~p~ 38 (285)
-.||.+||..-.+|.|.|||-..
T Consensus 79 invtfdgdtvtvegqleggsleh 101 (106)
T 1qys_A 79 INVTFDGDTVTVEGQLEGGSLEH 101 (106)
T ss_dssp EEEEEETTEEEEEEEC-------
T ss_pred eeEEEcCCeEEEEeEEcCCcccc
Confidence 35788999999999999999654
No 383
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=25.11 E-value=52 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHhHHHHHH-----HHHHHHHHHHhHHhh
Q 023255 196 SNHEQREIMEKNIISVAQ-----QIERLQAELANAEKR 228 (285)
Q Consensus 196 e~~eq~q~meknli~ma~-----e~ekLrael~n~e~r 228 (285)
.++=|..+|||.+-.|.. ||..|+.+-..||+.
T Consensus 17 ~~~~~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~ 54 (128)
T 1sf9_A 17 NLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQH 54 (128)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHc
Confidence 467799999999999987 677777766666644
No 384
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.07 E-value=85 Score=24.08 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=9.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhh
Q 023255 165 DMAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~ 187 (285)
|=.-|...++.|..||......+
T Consensus 57 KWAKL~Rk~DKl~~ele~l~~~L 79 (94)
T 3vlc_E 57 KWTKNNRKLDSLDKEINNLKDEI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 385
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.05 E-value=2.3e+02 Score=21.88 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKA 159 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~ 159 (285)
.+.+-++..+..+...+.++......+..++..+...|++.
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666555553
No 386
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=24.97 E-value=2.3e+02 Score=21.59 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023255 73 VALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (285)
Q Consensus 73 ~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L 107 (285)
+.-+.+|.-.+.+|..+...+.+-.++++..+|+|
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el 51 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLREL 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777777777777777777777
No 387
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.95 E-value=1.6e+02 Score=22.87 Aligned_cols=39 Identities=8% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 122 ESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 122 e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+.|++-..+++.-|..|...+=+|..+|..-..||++++
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~ 83 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLR 83 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Confidence 345555556666666666666666666666655555543
No 388
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.76 E-value=1.3e+02 Score=20.34 Aligned_cols=37 Identities=5% Similarity=0.337 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHH
Q 023255 141 IKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETER 177 (285)
Q Consensus 141 ~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~Lr 177 (285)
.|.++..++..|+++-..++-. .-+|..|+.+++.++
T Consensus 7 rr~e~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 7 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665555544 455555555555554
No 389
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=24.68 E-value=3.8e+02 Score=24.04 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~L 176 (285)
+...........++....+..+...|.++.....+|..+-.-|..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~I 158 (341)
T 3zx6_A 113 ASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGI 158 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444433
No 390
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=24.14 E-value=1e+02 Score=21.77 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHH
Q 023255 168 AIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNII 209 (285)
Q Consensus 168 aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli 209 (285)
.+..-|+.|++++..+-...+||+-+. .-++.+++++.++
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~--lRD~I~~L~~~l~ 60 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQ--IRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHHHHHHHHh
Confidence 466667778888888888888887653 4566666666554
No 391
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=23.94 E-value=55 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 109 EKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLN 150 (285)
Q Consensus 109 ~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq 150 (285)
+.+.++++++..+.-+++.+.--+.|...-.+.|..+..+..
T Consensus 45 e~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe 86 (96)
T 3fx0_A 45 EEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444455555444444444444444444444333
No 392
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.71 E-value=2.4e+02 Score=21.42 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023255 118 LRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKAR 160 (285)
Q Consensus 118 lr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~ 160 (285)
+..+++-..++.+++..+.+|...-++|..-|..--.-+.+..
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie 55 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 55 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5666777777788888888777776666666655444444433
No 393
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=23.55 E-value=1.2e+02 Score=22.33 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHH
Q 023255 57 DIQSLLQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVREL 107 (285)
Q Consensus 57 EIq~lL~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L 107 (285)
-++..|.-.+.+-..++.|.|-|+..-.+|+ +++++-++|.+
T Consensus 23 ~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IR---------qadt~~qvr~I 64 (79)
T 1tu3_F 23 RLQTELDVSEQVQRDFVKLSQTLQVQLERIR---------QADSLERIRAI 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHH
Confidence 4555666667777777777776666544443 35677788888
No 394
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=23.20 E-value=51 Score=25.98 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHH-HHHHHHHH
Q 023255 113 KLDAELRVIESMHAELDRVRADIEKL---------CVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEI-ETERQEIH 181 (285)
Q Consensus 113 kleaelr~~e~lk~El~qlr~eiq~l---------~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEI-e~LrqEl~ 181 (285)
+|+++ .....+||.....+++.+ ...++....+++.+.+++.++..+ .+.+...+.++ ..+...+.
T Consensus 27 ~l~~~---~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~ 103 (143)
T 1u2m_A 27 TLENE---FKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQ 103 (143)
T ss_dssp TTC------------------------------------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhh
Q 023255 182 KGRAAIECEKK 192 (285)
Q Consensus 182 ~~ra~~e~ekk 192 (285)
.+=..|--+++
T Consensus 104 ~ai~~vak~~g 114 (143)
T 1u2m_A 104 TAVKSVANSQD 114 (143)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
No 395
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.20 E-value=2.5e+02 Score=24.44 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=7.6
Q ss_pred HHHHHhhhhhhhhhhhhchhhhHHHHH
Q 023255 177 RQEIHKGRAAIECEKKNRASNHEQREI 203 (285)
Q Consensus 177 rqEl~~~ra~~e~ekk~~~e~~eq~q~ 203 (285)
-...+.+-..|+.-.....+++|....
T Consensus 145 ae~~q~la~vi~~l~~~~~~~~e~~~~ 171 (209)
T 2wvr_A 145 AEHVQYMAELIERLNGEPLDNFESLDN 171 (209)
T ss_dssp HHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHhcCCcccccCchh
Confidence 334444444555555555555555444
No 396
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.15 E-value=1.5e+02 Score=18.62 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 129 DRVRADIEKLCVIKQEMIKDLNEING 154 (285)
Q Consensus 129 ~qlr~eiq~l~~~rqeL~aevq~Lek 154 (285)
.|+...++++.....+|..+|.++.+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555566666666666555543
No 397
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.14 E-value=2.2e+02 Score=20.60 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023255 151 EINGDL 156 (285)
Q Consensus 151 ~LekDL 156 (285)
.+..||
T Consensus 23 ~~r~e~ 28 (74)
T 2xv5_A 23 EMRARM 28 (74)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 398
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.14 E-value=25 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 156 LAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 156 L~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
-++|-...-|+..|..||+.++.+|...++.|+
T Consensus 55 FAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 55 YAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567788888888888888888888775
No 399
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=23.06 E-value=1.3e+02 Score=32.08 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023255 115 DAELRVIESMHAELDRVRADIE 136 (285)
Q Consensus 115 eaelr~~e~lk~El~qlr~eiq 136 (285)
++-++..+++..+|..++..+.
T Consensus 922 qal~KKhea~e~dl~a~e~ri~ 943 (1010)
T 1g8x_A 922 QAKLKNLEAFDGECQSLEGQSN 943 (1010)
T ss_dssp GGGTTSHHHHTTTTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666555544
No 400
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=22.89 E-value=1.6e+02 Score=20.77 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=35.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHHH
Q 023255 163 SKDMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 163 ~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma~ 213 (285)
.....+|..+|..++.|+-.+|..-- . +..++..+.+..-+++..+-.
T Consensus 8 ~~s~~EL~~~l~elk~ELf~LR~q~a--t-gql~n~~~ir~vRr~IARi~T 55 (67)
T 2zjr_V 8 NLQATDFAKEIDARKKELMELRFQAA--A-GQLAQPHRVRQLRREVAQLNT 55 (67)
T ss_dssp TSCHHHHHHHHHTHHHHHHHHHHHHH--H-SCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH--h-CCCcccHHHHHHHHHHHHHHH
Confidence 34457888888888888888885433 2 667888888888888777654
No 401
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.81 E-value=1.8e+02 Score=20.81 Aligned_cols=13 Identities=15% Similarity=0.606 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRA 133 (285)
Q Consensus 121 ~e~lk~El~qlr~ 133 (285)
++-+..||.++..
T Consensus 41 ~DKl~~ele~l~~ 53 (65)
T 3sja_C 41 LDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 402
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=22.74 E-value=2.3e+02 Score=23.91 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 023255 100 RDAEVRELYEKSLKLDAE 117 (285)
Q Consensus 100 ~e~~~r~L~~k~~kleae 117 (285)
.....|+++|...++-.+
T Consensus 208 ~~~~~rdv~d~~~~~~e~ 225 (252)
T 3ck6_A 208 RPHQYRFAHNNITRINET 225 (252)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556665555554443
No 403
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=22.72 E-value=1.9e+02 Score=20.33 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl 180 (285)
++...+..|++.|.++-.+ =-+-..++.+|..|+..+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4566678888888887766 445566788888887654
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.70 E-value=18 Score=34.75 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 023255 142 KQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECEK 191 (285)
Q Consensus 142 rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~ek 191 (285)
++.+..+|+.-++.+.++..+ ..+...++..++.-++++...+..+|.|+
T Consensus 343 ~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 393 (427)
T 2qag_B 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEV 393 (427)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444444 33344444444433344444444444444
No 405
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=22.54 E-value=12 Score=35.22 Aligned_cols=47 Identities=9% Similarity=0.290 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 023255 124 MHAELDRVRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETE 176 (285)
Q Consensus 124 lk~El~qlr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~L 176 (285)
..++..+++..+++..+.|+++.++++..+.++ .++|.+++.+++.+
T Consensus 338 ~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~------~~~~~~~~~~~~~~ 384 (386)
T 2bnx_A 338 SEAKATELEKKLDSELTARHELQVEMKKMENDF------EQKLQDLQGEKDAL 384 (386)
T ss_dssp HHTTTCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence 344455667778888888888888888777654 35666666665544
No 406
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.31 E-value=53 Score=29.14 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGD 155 (285)
Q Consensus 144 eL~aevq~LekD 155 (285)
++..+++.+..|
T Consensus 152 ~~~~~i~ql~~E 163 (250)
T 2ve7_C 152 SSADKMQQLNAA 163 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 407
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=22.21 E-value=1.3e+02 Score=28.45 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=25.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 023255 161 DESKDMAAIKAEIETERQEIHKGRAAIECEKK 192 (285)
Q Consensus 161 ~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ekk 192 (285)
.|-.++.+|+.+++.++.++..+....+.+++
T Consensus 417 ~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (468)
T 3pxg_A 417 QEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448 (468)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45778889999999999999988887776554
No 408
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=22.20 E-value=4.8e+02 Score=24.50 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhhhhh-----hhhchhhhHHHHHHHHhHH
Q 023255 136 EKLCVIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEIHKGRAAIECE-----KKNRASNHEQREIMEKNII 209 (285)
Q Consensus 136 q~l~~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl~~~ra~~e~e-----kk~~~e~~eq~q~meknli 209 (285)
+.+...-+.|...+..+...|...+.+ +.+|...-.+|..+-++|..+-..|-.- -..-.+++.|+..+-..|-
T Consensus 67 ~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS 146 (463)
T 2d4y_A 67 QALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHH
Q ss_pred HH
Q 023255 210 SV 211 (285)
Q Consensus 210 ~m 211 (285)
.+
T Consensus 147 ~~ 148 (463)
T 2d4y_A 147 KI 148 (463)
T ss_dssp HH
T ss_pred hh
No 409
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=22.15 E-value=49 Score=24.97 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 119 RVIESMHAELDRVRADIEKLCVIKQEMIKDLNEINGD 155 (285)
Q Consensus 119 r~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~LekD 155 (285)
...+.++.+|+.+-.+|-.|-+.|-.+..+|..+.++
T Consensus 8 ~~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~ 44 (101)
T 3ret_A 8 TGLADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS 44 (101)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467888888888888888888888888888777644
No 410
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.93 E-value=2.5e+02 Score=20.88 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 131 VRADIEKLCVIKQEMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 131 lr~eiq~l~~~rqeL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
...+.+.|.....+|.-.|..|+.+=... ..||++-++||-.|++.+....+.|+
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQy---EkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQY---EWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 33444455555555555555555442221 46677777777777777766655444
No 411
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=21.83 E-value=22 Score=31.40 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCC---CCCCccc
Q 023255 247 SYGNPDPGFGGSLYA---DPYSMHQ 268 (285)
Q Consensus 247 ~~gn~~~~~~~~~y~---~~y~~~~ 268 (285)
.+|||.-||.|++|+ .|||+.+
T Consensus 85 ~~gnP~~gFvG~p~~~~~~g~giy~ 109 (236)
T 3erv_A 85 VRGNPNEGFVGNIYTFSESGYGVYH 109 (236)
T ss_dssp EECCTTTSEEBCSSCTTSCBCCCCH
T ss_pred CCCCCccCccCCccccCCCcceeec
Confidence 368999999999984 6788665
No 412
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=21.71 E-value=3.3e+02 Score=22.23 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhhh
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDL-NEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIEC 189 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aev-q~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e~ 189 (285)
.+.+.++|..+..++..+....+...--= +.=++||...-.+-+-+.--..=+..|+..|.++..+|..
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~l 125 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDL 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332222111 1124455554433333443334446666666666666654
No 413
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=21.68 E-value=27 Score=28.18 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHH
Q 023255 212 AQQIERLQAELANAEKRARAAAA 234 (285)
Q Consensus 212 a~e~ekLrael~n~e~r~~a~~~ 234 (285)
...|..|.-.|-+.+|++++.+|
T Consensus 38 ~~~in~L~~~I~~~~k~a~aGiA 60 (129)
T 2gr7_A 38 AGQVNNLEGKVNKVGKRADAGTA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777788777663
No 414
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=21.59 E-value=2e+02 Score=20.44 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhhhhhhhh--hchhhhHHHHHHHHhHHHHHH
Q 023255 164 KDMAAIKAEIETERQEIHKGRAAIECEKK--NRASNHEQREIMEKNIISVAQ 213 (285)
Q Consensus 164 qkl~aLkaEIe~LrqEl~~~ra~~e~ekk--~~~e~~eq~q~meknli~ma~ 213 (285)
....+|..+|..++.|+-.+|.. +. +..++..+.+..-+++..+-.
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q----~atggql~n~~~ir~vRr~IARi~T 59 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAV----QAAGGAPENPGRIKELRKAIARIKT 59 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH----HHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHhcCCccChHHHHHHHHHHHHHHH
Confidence 34567777778888887777732 33 246788888888887776654
No 415
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.53 E-value=3.2e+02 Score=21.92 Aligned_cols=10 Identities=30% Similarity=-0.064 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 023255 207 NIISVAQQIE 216 (285)
Q Consensus 207 nli~ma~e~e 216 (285)
+.|+=|..+.
T Consensus 135 k~ls~As~~~ 144 (155)
T 2oto_A 135 LAIDQASQDY 144 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 416
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.51 E-value=2.3e+02 Score=20.52 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 106 ELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 106 ~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
.++.++ ..-+..++.+..++..++..|.....+|..++.+|
T Consensus 40 ~iL~kA------~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 40 SLLTKA------KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 417
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=21.12 E-value=2.8e+02 Score=25.70 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 023255 166 MAAIKAEIETERQEIHKGRAAI 187 (285)
Q Consensus 166 l~aLkaEIe~LrqEl~~~ra~~ 187 (285)
+..|+.+++.+.+++.++...+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333
No 418
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.06 E-value=1.7e+02 Score=18.75 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEM 145 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL 145 (285)
.++.|.+|.+++..++.|...+-.|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777666655444
No 419
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=20.98 E-value=3.6e+02 Score=22.38 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 023255 43 SLHHLEDRIAIQHSDIQSLLQDNQRLAATHV 73 (285)
Q Consensus 43 l~n~Lee~L~~q~~EIq~lL~dnqrla~~h~ 73 (285)
-++.+++++..++..+.++..+-........
T Consensus 38 ~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~ 68 (244)
T 1uru_A 38 IFDDHLNNFNRQQASANRLQKEFNNYIRCVR 68 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888888888888777776665543
No 420
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.86 E-value=1.6e+02 Score=27.19 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHH
Q 023255 71 THVALKQELSLA 82 (285)
Q Consensus 71 ~h~~LqqEL~la 82 (285)
+|+.++.+|+..
T Consensus 3 ~~~~~~~~le~~ 14 (323)
T 1lwu_B 3 THVNAQKEIENR 14 (323)
T ss_dssp ----CHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 444444444433
No 421
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=20.73 E-value=1e+02 Score=21.53 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhhhhhhhchhhhHHHHHHHHhHHHHH
Q 023255 165 DMAAIKAEIETERQEIHKGRAAIECEKKNRASNHEQREIMEKNIISVA 212 (285)
Q Consensus 165 kl~aLkaEIe~LrqEl~~~ra~~e~ekk~~~e~~eq~q~meknli~ma 212 (285)
...+|..+|..++.|+-.+|..--- +..++..+.+..-+++..+-
T Consensus 10 s~~EL~~~l~elk~Elf~LR~q~at---gql~n~~~ir~vRr~IARi~ 54 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQFNLRMQAAS---GQLQQSHLLKQVRRDVARVK 54 (63)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT---TCCSCGGGTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---CCCcCcHHHHHHHHHHHHHH
Confidence 3567777777777777777764433 45667777777766666553
No 422
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=20.62 E-value=3e+02 Score=21.28 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh
Q 023255 139 CVIKQEMIKDLNEINGDLAKARDE--SKDMAAIKAEIETERQEIHKGRAA 186 (285)
Q Consensus 139 ~~~rqeL~aevq~LekDL~~~~~d--~qkl~aLkaEIe~LrqEl~~~ra~ 186 (285)
.....++.+.|+.|++.+.+..-= .=.+..-...|..|+..+...|+.
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~ 106 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRG 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888774321 112333444445555555444443
No 423
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.58 E-value=1.2e+02 Score=21.24 Aligned_cols=31 Identities=6% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 126 AELDRVRADIEKLCVIKQEMIKDLNEINGDL 156 (285)
Q Consensus 126 ~El~qlr~eiq~l~~~rqeL~aevq~LekDL 156 (285)
+.+..|+..+..|.....+|..+|..|...+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555666666555443
No 424
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.55 E-value=4.9e+02 Score=23.77 Aligned_cols=150 Identities=8% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAERDAEVRELYEKSLKLDAELRVIESMHAELDRVRADIEKLCVI 141 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae~e~~~r~L~~k~~kleaelr~~e~lk~El~qlr~eiq~l~~~ 141 (285)
+..-+.+...|..++.+|...+..+..+......+....--....|..+...|... -+.+...+..-+..+......
T Consensus 164 l~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~---W~~L~~~~~~R~~~L~~~~~~ 240 (476)
T 1hci_A 164 LTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQ---WDRLGTLTQKRREALERMEKL 240 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---------------------------------HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhhh
Q 023255 142 KQEMIK---------------------------------DLNEINGDLAKARDESKDMAAIKAEIETERQEIHKGRAAIE 188 (285)
Q Consensus 142 rqeL~a---------------------------------evq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl~~~ra~~e 188 (285)
.+.+.. .|+.+-++...|..+......-...+..|.+...++-....
T Consensus 241 ~~~~e~l~~~f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 320 (476)
T 1hci_A 241 LETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYN 320 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred h----hhhhchhhhHHHHHHHHhHHHHHHH
Q 023255 189 C----EKKNRASNHEQREIMEKNIISVAQQ 214 (285)
Q Consensus 189 ~----ekk~~~e~~eq~q~meknli~ma~e 214 (285)
. ....-...++.+..-=.+|..++.+
T Consensus 321 ~~~~~~~~~i~~~~~~L~~~w~~L~~~~~~ 350 (476)
T 1hci_A 321 IRISSSNPYSTVTMDELRTKWDKVKQLVPI 350 (476)
T ss_dssp CCSCSCCTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhccHHHHHHHHHHHHHHHHH
No 425
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.42 E-value=2.9e+02 Score=21.04 Aligned_cols=61 Identities=11% Similarity=0.251 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHH
Q 023255 120 VIESMHAELDRVRADIEKLC----VIKQEMIKDLNEINGDLAKARDE-SKDMAAIKAEIETERQEI 180 (285)
Q Consensus 120 ~~e~lk~El~qlr~eiq~l~----~~rqeL~aevq~LekDL~~~~~d-~qkl~aLkaEIe~LrqEl 180 (285)
=++.+..+.-.|+.....|. ..+.........+.+-+++|..+ ..++|=|+..|.-+....
T Consensus 21 F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 21 FKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 35667777777777777775 57888899999999999999988 888999999998876654
No 426
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=20.15 E-value=3.2e+02 Score=21.40 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023255 121 IESMHAELDRVRADIEKLCVIKQEMIKDLNEI 152 (285)
Q Consensus 121 ~e~lk~El~qlr~eiq~l~~~rqeL~aevq~L 152 (285)
.+.+|.||..-.+.+.++.....+|...-+.+
T Consensus 26 LeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~ 57 (109)
T 2fcw_A 26 LEAFREELKHFEAKIEKHNHYQKQLEIAHEKL 57 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988888888644443
No 427
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=20.10 E-value=3.7e+02 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 023255 62 LQDNQRLAATHVALKQELSLAEQELRHLSSVAASVKAE 99 (285)
Q Consensus 62 L~dnqrla~~h~~LqqEL~laqhEL~~l~~~i~~~~ae 99 (285)
+..-+.+...|..|+++|..-...+..+......+..+
T Consensus 37 l~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~ 74 (210)
T 3pdy_A 37 LPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPA 74 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 34477888999999999999998898887777665433
No 428
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.02 E-value=2.7e+02 Score=20.55 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 023255 144 EMIKDLNEINGDLAKARDESKDMAAIKAEIETERQEI 180 (285)
Q Consensus 144 eL~aevq~LekDL~~~~~d~qkl~aLkaEIe~LrqEl 180 (285)
.|..+|..+..+|..++.++..++++-.+...|..=|
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555554433
Done!