Query 023258
Match_columns 285
No_of_seqs 238 out of 1964
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00688 rarD rarD protein. T 99.9 2.6E-20 5.6E-25 164.9 21.0 161 91-279 2-170 (256)
2 PRK15430 putative chlorampheni 99.8 1.3E-19 2.9E-24 163.8 20.9 164 88-279 5-173 (296)
3 PRK11689 aromatic amino acid e 99.8 2.4E-19 5.1E-24 162.1 20.1 176 90-281 3-182 (295)
4 PRK11272 putative DMT superfam 99.8 7.6E-19 1.6E-23 158.5 22.1 163 93-279 10-174 (292)
5 PRK11453 O-acetylserine/cystei 99.8 2.5E-18 5.5E-23 155.6 21.7 164 92-282 5-170 (299)
6 PLN00411 nodulin MtN21 family 99.8 2.2E-18 4.8E-23 159.3 21.5 193 90-282 12-216 (358)
7 TIGR00950 2A78 Carboxylate/Ami 99.8 2.6E-18 5.6E-23 151.8 18.2 155 103-282 1-155 (260)
8 PRK10532 threonine and homoser 99.8 6E-17 1.3E-21 146.3 20.5 165 89-281 10-174 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.7 2.7E-16 5.9E-21 141.1 19.8 163 93-279 3-168 (281)
10 KOG4510 Permease of the drug/m 99.7 5E-19 1.1E-23 152.2 0.4 183 89-282 36-218 (346)
11 COG2510 Predicted membrane pro 99.7 5E-17 1.1E-21 125.3 10.9 132 92-224 4-138 (140)
12 PTZ00343 triose or hexose phos 99.7 4.8E-15 1E-19 137.1 23.6 169 90-281 48-220 (350)
13 TIGR00817 tpt Tpt phosphate/ph 99.7 1.5E-14 3.3E-19 131.0 21.9 154 104-279 15-169 (302)
14 COG0697 RhaT Permeases of the 99.7 2.2E-14 4.7E-19 127.7 21.4 169 90-278 6-177 (292)
15 PF00892 EamA: EamA-like trans 99.6 1.4E-14 3.1E-19 113.0 11.6 122 101-224 1-125 (126)
16 COG2962 RarD Predicted permeas 99.6 1.4E-13 3.1E-18 120.7 18.3 162 89-278 5-171 (293)
17 PF06027 DUF914: Eukaryotic pr 99.6 1.2E-13 2.7E-18 125.9 18.7 180 90-282 12-195 (334)
18 COG5006 rhtA Threonine/homoser 99.6 2.3E-13 4.9E-18 116.8 17.3 164 92-283 13-176 (292)
19 TIGR00776 RhaT RhaT L-rhamnose 99.5 3.6E-13 7.7E-18 121.5 18.2 168 92-277 2-174 (290)
20 TIGR00950 2A78 Carboxylate/Ami 99.5 3.5E-12 7.5E-17 112.6 18.0 132 89-221 126-260 (260)
21 PF13536 EmrE: Multidrug resis 99.4 8.4E-12 1.8E-16 96.9 11.7 104 125-229 2-110 (113)
22 PRK10532 threonine and homoser 99.4 5.5E-11 1.2E-15 107.4 18.5 136 90-227 147-283 (293)
23 PRK11689 aromatic amino acid e 99.4 5.3E-11 1.1E-15 107.6 17.6 133 90-226 155-288 (295)
24 PRK11272 putative DMT superfam 99.3 1.2E-10 2.5E-15 105.2 18.1 135 90-226 149-286 (292)
25 PLN00411 nodulin MtN21 family 99.3 2.2E-10 4.9E-15 106.1 18.1 137 90-227 188-330 (358)
26 TIGR03340 phn_DUF6 phosphonate 99.2 1.4E-10 2.9E-15 104.2 11.6 133 90-223 143-281 (281)
27 PRK11453 O-acetylserine/cystei 99.2 2.3E-09 5.1E-14 97.0 18.6 139 90-228 142-290 (299)
28 TIGR00817 tpt Tpt phosphate/ph 99.1 2.6E-09 5.6E-14 96.8 13.5 136 90-226 144-294 (302)
29 PRK15430 putative chlorampheni 99.0 9E-09 2E-13 93.1 16.3 134 94-228 152-288 (296)
30 KOG2765 Predicted membrane pro 99.0 8.9E-10 1.9E-14 99.6 9.5 119 149-281 155-273 (416)
31 COG0697 RhaT Permeases of the 99.0 4.3E-08 9.2E-13 87.1 18.2 134 90-226 153-288 (292)
32 PF08449 UAA: UAA transporter 99.0 1.2E-07 2.6E-12 86.1 20.4 151 119-282 31-181 (303)
33 PTZ00343 triose or hexose phos 98.9 6.1E-08 1.3E-12 89.8 17.5 135 90-224 193-347 (350)
34 TIGR00776 RhaT RhaT L-rhamnose 98.9 2.5E-08 5.3E-13 90.1 14.5 129 90-224 151-287 (290)
35 PF03151 TPT: Triose-phosphate 98.9 7.4E-08 1.6E-12 78.1 15.8 131 92-222 1-150 (153)
36 PRK15051 4-amino-4-deoxy-L-ara 98.9 8.3E-08 1.8E-12 74.2 14.4 65 161-225 45-109 (111)
37 PF04142 Nuc_sug_transp: Nucle 98.9 6.2E-08 1.3E-12 85.3 13.8 130 150-284 14-143 (244)
38 COG5006 rhtA Threonine/homoser 98.9 1.1E-07 2.5E-12 82.0 14.7 131 90-221 147-278 (292)
39 PRK02971 4-amino-4-deoxy-L-ara 98.8 1.8E-07 3.9E-12 74.2 14.5 120 91-226 2-123 (129)
40 PF06027 DUF914: Eukaryotic pr 98.6 2.3E-06 5E-11 78.4 15.7 140 88-228 165-308 (334)
41 KOG2234 Predicted UDP-galactos 98.5 2.6E-05 5.6E-10 70.8 20.4 182 92-284 16-212 (345)
42 PF06800 Sugar_transport: Suga 98.4 9.5E-06 2.1E-10 71.9 14.2 128 89-224 136-263 (269)
43 KOG2766 Predicted membrane pro 98.4 5.9E-09 1.3E-13 90.0 -6.7 176 90-282 17-193 (336)
44 KOG4314 Predicted carbohydrate 98.3 1.2E-06 2.6E-11 73.2 6.7 98 162-279 62-159 (290)
45 PF08449 UAA: UAA transporter 98.3 2.7E-05 6E-10 70.6 15.8 135 92-226 155-298 (303)
46 KOG1441 Glucose-6-phosphate/ph 98.3 2.2E-06 4.8E-11 77.7 8.5 150 108-279 34-187 (316)
47 PF06800 Sugar_transport: Suga 98.2 4.2E-05 9.1E-10 67.8 14.6 145 119-277 11-160 (269)
48 PF04657 DUF606: Protein of un 98.2 6.1E-05 1.3E-09 60.5 14.4 129 93-222 3-138 (138)
49 PRK13499 rhamnose-proton sympo 98.2 0.0001 2.2E-09 67.8 16.8 172 89-272 5-191 (345)
50 COG2962 RarD Predicted permeas 98.2 0.00013 2.9E-09 64.6 16.7 128 97-227 154-285 (293)
51 PRK09541 emrE multidrug efflux 98.2 8E-05 1.7E-09 57.4 13.4 69 157-225 34-103 (110)
52 PRK10650 multidrug efflux syst 98.2 7.8E-05 1.7E-09 57.3 13.2 68 156-223 38-106 (109)
53 KOG1444 Nucleotide-sugar trans 98.2 0.00026 5.7E-09 63.5 17.7 166 93-280 14-182 (314)
54 PRK10452 multidrug efflux syst 98.1 2.8E-05 6E-10 60.8 9.7 69 157-225 34-103 (120)
55 COG2076 EmrE Membrane transpor 98.1 2.7E-05 5.9E-10 59.0 9.2 71 155-225 32-103 (106)
56 PF05653 Mg_trans_NIPA: Magnes 98.1 4.5E-05 9.7E-10 69.2 11.4 120 87-226 3-123 (300)
57 PRK11431 multidrug efflux syst 98.0 5.8E-05 1.3E-09 57.6 9.9 69 156-224 32-101 (105)
58 PF10639 UPF0546: Uncharacteri 98.0 1.6E-05 3.5E-10 61.2 6.9 109 98-223 3-112 (113)
59 TIGR00688 rarD rarD protein. T 98.0 0.00017 3.6E-09 63.7 14.1 104 94-200 149-255 (256)
60 KOG3912 Predicted integral mem 98.0 0.00034 7.3E-09 61.8 14.3 116 154-281 87-202 (372)
61 KOG4510 Permease of the drug/m 97.9 1E-05 2.2E-10 70.7 3.3 135 90-225 190-325 (346)
62 KOG1581 UDP-galactose transpor 97.7 0.00071 1.5E-08 60.4 12.2 136 89-224 170-312 (327)
63 KOG1443 Predicted integral mem 97.7 0.00024 5.2E-09 63.3 8.5 141 120-282 45-191 (349)
64 PF00893 Multi_Drug_Res: Small 97.6 0.00081 1.7E-08 50.2 10.1 59 158-216 34-93 (93)
65 KOG1441 Glucose-6-phosphate/ph 97.5 0.00039 8.5E-09 63.2 8.3 136 89-225 161-307 (316)
66 KOG2765 Predicted membrane pro 97.4 0.0016 3.5E-08 59.7 11.1 139 90-229 246-394 (416)
67 TIGR00803 nst UDP-galactose tr 97.4 0.0013 2.8E-08 56.8 9.8 133 90-222 84-221 (222)
68 PRK13499 rhamnose-proton sympo 97.3 0.014 3E-07 53.9 16.0 138 88-226 171-342 (345)
69 COG3238 Uncharacterized protei 97.3 0.019 4.2E-07 46.4 14.8 135 90-224 4-145 (150)
70 COG4975 GlcU Putative glucose 97.3 1.6E-05 3.4E-10 68.7 -3.7 165 92-275 3-172 (288)
71 PF06379 RhaT: L-rhamnose-prot 97.2 0.024 5.1E-07 51.8 15.4 174 89-275 5-193 (344)
72 KOG1581 UDP-galactose transpor 97.0 0.03 6.5E-07 50.2 13.7 147 119-279 50-196 (327)
73 KOG1580 UDP-galactose transpor 96.9 0.0028 6.1E-08 54.7 6.9 171 94-280 16-197 (337)
74 PF07857 DUF1632: CEO family ( 96.8 0.014 3E-07 51.6 10.7 183 92-281 1-209 (254)
75 KOG1442 GDP-fucose transporter 96.7 0.0017 3.7E-08 57.2 3.6 141 119-278 60-208 (347)
76 KOG1580 UDP-galactose transpor 96.4 0.02 4.3E-07 49.6 8.6 136 90-225 171-313 (337)
77 KOG2922 Uncharacterized conser 96.4 0.00066 1.4E-08 61.0 -0.8 122 87-228 17-139 (335)
78 KOG1582 UDP-galactose transpor 95.9 0.084 1.8E-06 46.8 10.1 139 90-228 189-335 (367)
79 KOG1444 Nucleotide-sugar trans 95.9 0.098 2.1E-06 47.3 10.5 136 90-225 156-300 (314)
80 PF04142 Nuc_sug_transp: Nucle 95.4 0.64 1.4E-05 40.9 13.8 126 90-215 113-243 (244)
81 PRK02237 hypothetical protein; 95.1 0.45 9.8E-06 36.1 10.1 47 179-225 58-105 (109)
82 KOG4831 Unnamed protein [Funct 94.6 0.35 7.7E-06 36.5 8.4 111 95-224 7-124 (125)
83 KOG1443 Predicted integral mem 94.6 0.95 2.1E-05 40.9 12.5 134 90-223 163-313 (349)
84 COG4975 GlcU Putative glucose 94.5 0.0045 9.7E-08 53.8 -2.2 127 90-224 151-277 (288)
85 PF02694 UPF0060: Uncharacteri 94.3 0.43 9.2E-06 36.2 8.3 53 174-226 51-104 (107)
86 COG5070 VRG4 Nucleotide-sugar 94.2 0.46 9.9E-06 41.1 9.3 133 91-223 155-294 (309)
87 KOG1442 GDP-fucose transporter 93.1 0.12 2.5E-06 46.0 3.9 136 90-225 184-327 (347)
88 KOG2766 Predicted membrane pro 93.0 0.15 3.2E-06 44.9 4.3 134 88-224 163-298 (336)
89 KOG2234 Predicted UDP-galactos 92.7 8.2 0.00018 35.6 15.9 136 89-224 181-321 (345)
90 COG1742 Uncharacterized conser 91.9 2.2 4.8E-05 32.2 8.8 40 187-226 66-105 (109)
91 PF04342 DUF486: Protein of un 90.6 5 0.00011 30.4 9.6 52 173-224 55-107 (108)
92 KOG1583 UDP-N-acetylglucosamin 89.5 2.9 6.2E-05 37.4 8.8 137 90-226 163-315 (330)
93 PF06570 DUF1129: Protein of u 87.3 17 0.00038 30.9 12.6 88 92-181 86-174 (206)
94 TIGR00803 nst UDP-galactose tr 86.5 3.4 7.4E-05 35.3 7.6 103 180-282 5-112 (222)
95 COG5070 VRG4 Nucleotide-sugar 86.4 7.3 0.00016 33.9 9.2 96 168-278 83-178 (309)
96 KOG3912 Predicted integral mem 85.8 17 0.00038 32.7 11.5 135 89-223 174-332 (372)
97 KOG1583 UDP-N-acetylglucosamin 85.0 0.44 9.5E-06 42.4 1.3 70 157-226 68-138 (330)
98 KOG1582 UDP-galactose transpor 83.7 20 0.00044 32.1 10.9 157 100-277 52-213 (367)
99 KOG4314 Predicted carbohydrate 74.6 21 0.00046 30.4 7.9 141 88-229 132-280 (290)
100 COG3169 Uncharacterized protei 74.0 35 0.00076 25.6 11.9 50 176-225 65-115 (116)
101 PF05653 Mg_trans_NIPA: Magnes 71.6 19 0.00042 32.6 7.7 63 164-226 223-293 (300)
102 PF06570 DUF1129: Protein of u 69.4 70 0.0015 27.1 12.1 24 255-278 179-202 (206)
103 PF11139 DUF2910: Protein of u 68.3 74 0.0016 27.0 12.6 40 186-225 159-211 (214)
104 PRK11715 inner membrane protei 67.8 1.2E+02 0.0026 29.2 14.9 50 90-143 305-354 (436)
105 PF11023 DUF2614: Protein of u 67.6 20 0.00044 27.5 5.7 25 202-226 5-29 (114)
106 PF06123 CreD: Inner membrane 67.4 1.2E+02 0.0026 29.1 15.5 50 90-143 299-348 (430)
107 COG2917 Intracellular septatio 67.0 67 0.0014 26.7 9.0 63 164-227 7-70 (180)
108 COG3086 RseC Positive regulato 66.6 12 0.00027 30.0 4.6 46 174-220 69-114 (150)
109 COG4760 Predicted membrane pro 64.5 92 0.002 26.7 12.3 80 149-228 110-193 (276)
110 PF04246 RseC_MucC: Positive r 60.2 16 0.00035 28.8 4.3 45 177-222 65-109 (135)
111 PF07857 DUF1632: CEO family ( 59.7 72 0.0016 28.3 8.7 27 89-115 181-207 (254)
112 PRK10862 SoxR reducing system 55.8 18 0.00038 29.5 3.9 46 174-220 69-114 (154)
113 PF05297 Herpes_LMP1: Herpesvi 53.9 4.3 9.3E-05 36.3 0.0 16 90-105 26-41 (381)
114 PF07123 PsbW: Photosystem II 52.9 25 0.00053 28.0 4.1 35 250-284 101-135 (138)
115 PF07168 Ureide_permease: Urei 52.3 2.3 5E-05 38.4 -1.9 125 96-222 1-143 (336)
116 PRK10666 ammonium transporter; 52.0 2.2E+02 0.0049 27.2 15.0 25 151-175 218-242 (428)
117 COG2323 Predicted membrane pro 48.8 1.3E+02 0.0029 26.1 8.4 80 121-203 4-83 (224)
118 PRK11715 inner membrane protei 48.4 2.6E+02 0.0056 26.9 11.6 73 153-225 331-404 (436)
119 PF09656 PGPGW: Putative trans 48.3 71 0.0015 21.1 5.1 44 208-278 4-47 (53)
120 KOG3817 Uncharacterized conser 47.7 1.1E+02 0.0024 28.5 8.0 80 103-187 201-285 (452)
121 PRK02935 hypothetical protein; 47.4 61 0.0013 24.6 5.2 27 201-227 5-31 (110)
122 PF10754 DUF2569: Protein of u 47.4 1.5E+02 0.0032 23.8 8.1 29 251-279 117-145 (149)
123 KOG2922 Uncharacterized conser 46.0 1E+02 0.0022 28.3 7.4 57 168-224 242-305 (335)
124 COG1030 NfeD Membrane-bound se 40.2 3.4E+02 0.0074 26.1 10.3 68 158-227 259-326 (436)
125 PF00689 Cation_ATPase_C: Cati 39.9 2E+02 0.0043 23.2 11.9 110 117-226 3-145 (182)
126 TIGR02865 spore_II_E stage II 39.8 4.5E+02 0.0098 27.3 15.0 19 204-222 147-165 (764)
127 PF12811 BaxI_1: Bax inhibitor 39.5 2.8E+02 0.0062 24.9 19.4 77 182-270 149-225 (274)
128 PF04550 Phage_holin_2: Phage 39.5 96 0.0021 22.8 5.1 31 199-229 24-60 (89)
129 TIGR03644 marine_trans_1 proba 39.1 3.5E+02 0.0075 25.7 13.6 107 152-284 204-322 (404)
130 PRK00259 intracellular septati 38.0 2.4E+02 0.0052 23.5 11.4 61 164-225 7-69 (179)
131 PF09964 DUF2198: Uncharacteri 37.6 1.5E+02 0.0032 21.0 6.1 20 203-222 18-37 (74)
132 PF05297 Herpes_LMP1: Herpesvi 36.4 12 0.00025 33.7 0.0 67 156-222 25-94 (381)
133 PF01102 Glycophorin_A: Glycop 35.2 66 0.0014 25.1 4.0 29 253-281 65-95 (122)
134 PF11381 DUF3185: Protein of u 34.6 14 0.0003 25.0 0.1 21 210-230 2-22 (59)
135 COG3965 Predicted Co/Zn/Cd cat 34.5 3.4E+02 0.0075 24.3 11.8 115 91-207 96-215 (314)
136 PF04018 DUF368: Domain of unk 34.2 3.3E+02 0.0073 24.1 11.7 71 153-225 54-128 (257)
137 KOG0682 Ammonia permease [Inor 34.0 4.6E+02 0.01 25.6 10.9 110 150-284 224-340 (500)
138 PRK10213 nepI ribonucleoside t 33.7 3.8E+02 0.0083 24.6 11.3 46 177-222 52-99 (394)
139 PF04279 IspA: Intracellular s 32.5 2.9E+02 0.0063 22.9 11.7 63 163-226 6-70 (176)
140 PLN00082 photosystem II reacti 32.3 71 0.0015 21.9 3.2 30 250-279 29-58 (67)
141 PLN00092 photosystem I reactio 30.8 52 0.0011 25.7 2.7 34 251-284 101-134 (137)
142 PF04156 IncA: IncA protein; 30.6 94 0.002 25.7 4.6 18 210-227 13-30 (191)
143 COG4858 Uncharacterized membra 30.3 3.4E+02 0.0074 23.0 10.5 86 92-181 101-189 (226)
144 TIGR02230 ATPase_gene1 F0F1-AT 29.0 1.1E+02 0.0023 23.1 4.1 35 189-223 54-88 (100)
145 PF07123 PsbW: Photosystem II 28.6 59 0.0013 25.9 2.7 27 87-113 102-128 (138)
146 KOG4455 Uncharacterized conser 28.2 2.7E+02 0.0059 21.2 6.4 26 151-176 83-108 (110)
147 PRK12585 putative monovalent c 27.6 84 0.0018 26.6 3.6 22 188-209 17-38 (197)
148 PF06963 FPN1: Ferroportin1 (F 27.4 5.6E+02 0.012 24.6 11.8 45 91-135 263-307 (432)
149 TIGR00997 ispZ intracellular s 27.1 3.7E+02 0.008 22.4 11.1 61 164-225 7-69 (178)
150 PF03419 Peptidase_U4: Sporula 26.3 4.1E+02 0.009 23.7 8.3 21 117-137 54-74 (293)
151 COG0004 AmtB Ammonia permease 25.4 6E+02 0.013 24.2 10.5 72 149-223 193-271 (409)
152 TIGR03144 cytochr_II_ccsB cyto 25.2 4.5E+02 0.0098 22.8 10.0 28 253-280 100-127 (243)
153 PF07698 7TM-7TMR_HD: 7TM rece 24.6 4E+02 0.0086 21.9 11.6 8 183-190 61-68 (194)
154 COG4956 Integral membrane prot 24.1 5.7E+02 0.012 23.6 9.3 46 92-137 8-53 (356)
155 PF10753 DUF2566: Protein of u 24.1 1.8E+02 0.004 19.3 4.0 31 185-215 8-38 (55)
156 TIGR01129 secD protein-export 23.6 5.9E+02 0.013 24.1 9.0 35 180-214 273-307 (397)
157 PF00873 ACR_tran: AcrB/AcrD/A 23.3 3.7E+02 0.008 28.7 8.4 49 172-221 879-929 (1021)
158 COG4858 Uncharacterized membra 23.2 4.7E+02 0.01 22.2 11.7 25 254-278 193-217 (226)
159 PRK10614 multidrug efflux syst 23.0 4.6E+02 0.01 28.1 9.1 52 170-222 865-918 (1025)
160 TIGR00828 EIID-AGA PTS system, 22.8 1.7E+02 0.0037 26.2 4.9 29 184-212 228-256 (271)
161 PF13127 DUF3955: Protein of u 22.8 2.6E+02 0.0056 19.0 5.0 58 208-272 3-60 (63)
162 PLN00077 photosystem II reacti 22.6 1.1E+02 0.0024 23.7 3.2 32 251-282 91-122 (128)
163 PRK09579 multidrug efflux prot 22.0 4.8E+02 0.01 28.0 8.9 50 172-222 861-912 (1017)
164 PRK10263 DNA translocase FtsK; 21.0 6.6E+02 0.014 27.9 9.5 13 190-202 87-99 (1355)
165 TIGR02865 spore_II_E stage II 20.7 3.3E+02 0.0071 28.3 7.2 44 180-223 11-54 (764)
166 TIGR02916 PEP_his_kin putative 20.6 8.8E+02 0.019 24.4 14.5 22 205-226 224-246 (679)
167 KOG2632 Rhomboid family protei 20.3 6.2E+02 0.013 22.5 10.4 18 253-270 178-195 (258)
168 PRK11103 PTS system mannose-sp 20.2 2.1E+02 0.0045 25.8 5.0 30 184-213 238-267 (282)
169 PF00909 Ammonium_transp: Ammo 20.2 7.3E+02 0.016 23.3 14.7 106 149-277 186-299 (399)
No 1
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=2.6e-20 Score=164.85 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCcchHHHHHHHHHHH
Q 023258 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP--------IFGPMHARNLLVLRALV 162 (285)
Q Consensus 91 ~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 162 (285)
+|++++++++++|+.+.++.|.+ .+++|.+++++|++++.++++++...++++ ...+++++..+.+.+++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 48999999999999999999983 569999999999999988877655333211 01122234456778888
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 242 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~ 242 (285)
.+.++.++++|++++++++++++.++.|+++++++++++|||+++++|++++++++|+.++..++..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~------------- 146 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS------------- 146 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 8899999999999999999999999999999999999999999999999999999999988753111
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 243 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 243 ~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
.. +++++++++||+|.+..|+..+
T Consensus 147 ---------~~----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 147 ---------LP----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred ---------ch----HHHHHHHHHHHHHHHHHhhcCC
Confidence 11 4578899999999999999765
No 2
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=1.3e-19 Score=163.78 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=134.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CcchHHHHHHHHHHH
Q 023258 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF-----GPMHARNLLVLRALV 162 (285)
Q Consensus 88 ~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----~~~~~~~~l~~~~~~ 162 (285)
++.+|++++++++++|+.+.+..|.. .+++|.+++++|+.++.++++++...+++... +.++.+...+.+++.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34789999999999999999999984 57999999999999998877666544432111 122333344566677
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 242 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~ 242 (285)
.+..+.++++|++++|+++++++.++.|+++++++++++|||+++++|+|++++++|+.++..+...
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~------------- 149 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS------------- 149 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 7888999999999999999999999999999999999999999999999999999999998753211
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 243 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 243 ~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
. .+++++++++||+|.+..|+..+
T Consensus 150 ---------~----~~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 150 ---------L----PIIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred ---------c----cHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 14688899999999999998754
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.84 E-value=2.4e-19 Score=162.07 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 169 (285)
.++++++++++++||.+.+..|... ++++|+.+.++|+.++.++++++..++ + .++++++..+.+++..+....+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~ 77 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGFP--R--LRQFPKRYLLAGGLLFVSYEIC 77 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcccc--c--cccccHHHHHHHhHHHHHHHHH
Confidence 5688999999999999999999977 889999999999999988887654211 1 1222334455555555566667
Q ss_pred HHHHHh----ccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccc
Q 023258 170 FVYSIQ----RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 245 (285)
Q Consensus 170 ~~~al~----~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 245 (285)
++.+++ ++++.+++++.++.|+++.+++++++|||+++++++|++++++|+.++..++..... ++.+
T Consensus 78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~--------~~~~- 148 (295)
T PRK11689 78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL--------AELI- 148 (295)
T ss_pred HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh--------hhhh-
Confidence 777765 467888999999999999999999999999999999999999999999876432110 0000
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 246 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 246 ~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
.+...+..|++++++++++||+|.++.|+..++.
T Consensus 149 --~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~ 182 (295)
T PRK11689 149 --NNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK 182 (295)
T ss_pred --hccccChHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 0012345799999999999999999999987654
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.83 E-value=7.6e-19 Score=158.52 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHH-HHHHHHHH
Q 023258 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFV 171 (285)
Q Consensus 93 ~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~ 171 (285)
+++.++..++||.+.+..|... ++++|.+++++|+.+++++++++...++++.. +++.+......|.+. ...+.+++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLP-TLRQWLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999977 79999999999999999888887766554433 344455455555544 56678888
Q ss_pred HHH-hccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCC
Q 023258 172 YSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRG 250 (285)
Q Consensus 172 ~al-~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (285)
++. ++++++.++++.++.|+++.+++++ +|||+++++++|++++++|++++..++..
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------------------- 145 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------------------- 145 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc---------------------
Confidence 898 9999999999999999999999986 79999999999999999999988643211
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 251 SDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 251 ~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
.....|++++++++++||.+.+..|+..+
T Consensus 146 ~~~~~G~l~~l~a~~~~a~~~~~~~~~~~ 174 (292)
T PRK11272 146 SGNPWGAILILIASASWAFGSVWSSRLPL 174 (292)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12457999999999999999999999765
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.82 E-value=2.5e-18 Score=155.62 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHH-HHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSF 170 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~ 170 (285)
..+++++++++||.+.++.|... ++++|..+.++|+.++.+.++++..+++. .++..+..++.. +..+.++
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPKV-------PLNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999987 78999999999999987666554432111 122334444444 3444577
Q ss_pred HHHHhc-cchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccC
Q 023258 171 VYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (285)
Q Consensus 171 ~~al~~-~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (285)
+.++++ .+++.++++.++.|+++.+++++++|||+++++++|++++++|+.++..++...
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------------------- 137 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------------------- 137 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC-------------------
Confidence 789988 689999999999999999999999999999999999999999999988543211
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 250 ~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
...+..|++++++++++||++.++.|+..++.+
T Consensus 138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~ 170 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHST 170 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 122457999999999999999999999865443
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.82 E-value=2.2e-18 Score=159.34 Aligned_cols=193 Identities=15% Similarity=0.091 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC--C-CCCcchHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ--P-IFGPMHARNLLVLRALVGFLS 166 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~l~ 166 (285)
.+.++.+++.-++++...++.|.+.+.+++|+.++++|+.++.++++++.+.+++ + +...++.+..+.+.|+++++.
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~ 91 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMY 91 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998889999999999999999888887654322 2 222344556666677777667
Q ss_pred HHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHH------hcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCC
Q 023258 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKP 240 (285)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~------l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~ 240 (285)
+.+++++++++++++++++.++.|++++++++++ +|||+++++++|++++++|+.++...+.......++.+..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 7789999999999999999999999999999999 6999999999999999999998875332100000000000
Q ss_pred C--ccc-ccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 241 G--EAI-SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 241 ~--~~~-~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
+ +.. +......+...|.+++++++++||+|+++.|+..++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~ 216 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP 216 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 000 00011123467999999999999999999998866543
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.80 E-value=2.6e-18 Score=151.85 Aligned_cols=155 Identities=22% Similarity=0.283 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 023258 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 182 (285)
Q Consensus 103 ~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a 182 (285)
||.+.+..|...+...++..+.+.|++++.+++.++.+.+ ...+++++.+..+++...+.+.++++|+++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 7889999999775678999999999999988877765544 223444556666666778899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHH
Q 023258 183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 262 (285)
Q Consensus 183 ~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ll 262 (285)
+++.++.|+++.+++++++|||+++++++|++++++|+.++..++.. ..+..|++++++
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~---------------------~~~~~G~~~~l~ 135 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL---------------------SINPAGLLLGLG 135 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc---------------------cccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998754311 235689999999
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 023258 263 SSITGGISYCLIKAGANASD 282 (285)
Q Consensus 263 sa~~~A~~~v~~r~l~~~~~ 282 (285)
++++|+++.+..|+..++.+
T Consensus 136 a~~~~a~~~~~~k~~~~~~~ 155 (260)
T TIGR00950 136 SGISFALGTVLYKRLVKKEG 155 (260)
T ss_pred HHHHHHHHHHHHhHHhhcCC
Confidence 99999999999999876444
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.77 E-value=6e-17 Score=146.27 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
+.+|+.++++++++|+.+..+.|+.. ++.+|.++.++|++++.++++++.++++++ . +++.++..+..|++....+.
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR-F-AKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc-C-CHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999987 679999999999999998887766543322 2 33445556677777788888
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCccccccc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV 248 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (285)
+++++++++|++.++++.++.|+++.+++. |++.+ +.++.++++|++++..++...
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~------------------ 142 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV------------------ 142 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc------------------
Confidence 999999999999999999999999998863 56554 455677899999887543221
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 249 RGSDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 249 ~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
+..+..|++++++++++||++.+..|+..++.
T Consensus 143 -~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~ 174 (293)
T PRK10532 143 -SHVDLTGAALALGAGACWAIYILSGQRAGAEH 174 (293)
T ss_pred -ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12246899999999999999999999986643
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.74 E-value=2.7e-16 Score=141.10 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh--CC-CCCCcchHHHHHHHHHHHHHHHHHH
Q 023258 93 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQ-PIFGPMHARNLLVLRALVGFLSLFS 169 (285)
Q Consensus 93 ~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~l~~~~ 169 (285)
+++.++++++|+...+..|... ++.++ ..++++..+.+++.++...+ ++ ....+++++...+++++.....+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999654 33333 34777777777776665543 22 2222445566677788888899999
Q ss_pred HHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccC
Q 023258 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (285)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (285)
+++++++.+++.++++.++.|+++++++++++|||+++++|+|++++++|++++..++..
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------------------- 139 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-------------------- 139 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 999999999999999999999999999999999999999999999999999998754321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 250 GSDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 250 ~~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
..+..|+.++++++++|++|.++.|+..+
T Consensus 140 -~~~~~g~~~~l~aal~~a~~~i~~k~~~~ 168 (281)
T TIGR03340 140 -QHRRKAYAWALAAALGTAIYSLSDKAAAL 168 (281)
T ss_pred -ccchhHHHHHHHHHHHHHHhhhhcccccc
Confidence 11346788999999999999999887643
No 10
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.73 E-value=5e-19 Score=152.24 Aligned_cols=183 Identities=21% Similarity=0.354 Sum_probs=148.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
..+|+++..++ ..+....++.+.. ...+|.+..-.|+++-.+..+++...+.++...++..+++++++|+.++.+..
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 36788888888 4455555555443 36899999999988888887777666666655566666778999999999999
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCccccccc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV 248 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (285)
+.|||++|++.++|+++.++.|+++.+++|.++||+.++.+.++..+.+.||+||++|.+.++ .....++ +.
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG----~~t~g~~----~s 184 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG----DTTEGED----SS 184 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC----CCccccc----cc
Confidence 999999999999999999999999999999999999999999999999999999999998753 2222222 11
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 249 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 249 ~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
.-..+..|.+.++.+++..|.-|++.|+++|+.+
T Consensus 185 ~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h 218 (346)
T KOG4510|consen 185 QVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH 218 (346)
T ss_pred cccccCCchHHHHHhHhhhhhHHHHHHHhhcccc
Confidence 2244567889999999999999999999987654
No 11
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.72 E-value=5e-17 Score=125.29 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~l~~~ 168 (285)
-.+++++++++|+...++.|... +++||..-+++|.++..+++..++...++.... .++.|.++++.|+.+.++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 56889999999999999999987 999999999999999988888888777665443 56678889999999999999
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+||.|++..+++.+..+..++|+++++++++++|||++..+|+|++++.+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999998875
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.70 E-value=4.8e-15 Score=137.10 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhCC--CCCC-cchHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ--PIFG-PMHARNLLVLRALVGFL 165 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~l 165 (285)
.+-.++.+.--.+-.......|.+. +.++ |+.++++|++++.++..++.....+ +... .+..++.++..|+++..
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455566666666666777789987 7789 9999999999997765544332111 2121 34466778888888877
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccc
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 245 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 245 (285)
.....+.|+++++++.+.++.++.|+++++++++++|||++++++++++++++|+++....+.
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----------------- 189 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL----------------- 189 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----------------
Confidence 777778999999999999999999999999999999999999999999999999999874321
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 246 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 246 ~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
..++.|++++++++++||++.++.|++.++.
T Consensus 190 -----~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~ 220 (350)
T PTZ00343 190 -----HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNK 220 (350)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2257899999999999999999999976543
No 13
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.67 E-value=1.5e-14 Score=130.95 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 023258 104 FFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 182 (285)
Q Consensus 104 a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a 182 (285)
....+..|.+...-..|..++++|+.++.+++.+.... .+++...+++.++.++..|++.++...+.++++++++++.+
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~ 94 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT 94 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33445678877333779999999999987766554221 11222234556777888888888888999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHH
Q 023258 183 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 262 (285)
Q Consensus 183 ~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ll 262 (285)
+++.++.|+++++++++++|||+++++++|++++++|+.+....+ ...+..|++++++
T Consensus 95 ~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------------------~~~~~~G~~~~l~ 152 (302)
T TIGR00817 95 HTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------------------LSFNWAGFLSAMI 152 (302)
T ss_pred HHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------------------ccccHHHHHHHHH
Confidence 999999999999999999999999999999999999998753211 1234679999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 023258 263 SSITGGISYCLIKAGAN 279 (285)
Q Consensus 263 sa~~~A~~~v~~r~l~~ 279 (285)
++++||++.+..|+..+
T Consensus 153 a~~~~a~~~v~~k~~~~ 169 (302)
T TIGR00817 153 SNITFVSRNIFSKKAMT 169 (302)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999765
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=2.2e-14 Score=127.70 Aligned_cols=169 Identities=19% Similarity=0.202 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSL 167 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~ 167 (285)
..+..+.++.++.|+......|... ++ .++....+.|..++.++..+...+++. .....++.++..+.+++.....+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAV-ESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 5688889999999999999999976 44 777777888999988774444443321 22222224566777778888999
Q ss_pred HHHHHHHhccchhHHHHHHhhHHHHHHHHHH-HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCccccc
Q 023258 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (285)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~-~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 246 (285)
.+++.++++++++.++.+.++.|+++.++++ +++|||+++++++++.++++|++++..++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-------------- 150 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-------------- 150 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh--------------
Confidence 9999999999999999999999999999997 7679999999999999999999999987765311
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 247 ~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
. ...|+++++++++++|++.+..|+..
T Consensus 151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 151 ----L-SLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 67999999999999999999999876
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.59 E-value=1.4e-14 Score=113.02 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023258 101 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ---PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (285)
Q Consensus 101 ~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~ 177 (285)
++||.+.++.|... ++.+|....++|+.++.+ ++++....++ .....+......+.+++...+++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 46999999999987 779999999999999986 4443333222 223333434444444444689999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 178 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 178 ~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+++.++.+.++.|+++.+++++++||++++++++|++++++|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 16
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.59 E-value=1.4e-13 Score=120.67 Aligned_cols=162 Identities=18% Similarity=0.192 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCcchHHHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-----FGPMHARNLLVLRALVG 163 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 163 (285)
..+|+++++.+.++||......|.+ +++++.++...|.+.+.++++.+....+++. .+.++.+....+.++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3679999999999999999999995 6899999999999999887766554333221 22344556677788888
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEA 243 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~ 243 (285)
...+..|.+|+++-..-++++-+++.|++.++++++++|||+++.+|+++.++.+||..........
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l------------- 149 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL------------- 149 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC-------------
Confidence 8999999999999999999999999999999999999999999999999999999999877643322
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 244 ISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 244 ~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
+ ..++.-+++|+.|..+-|++.
T Consensus 150 ---------p----wval~la~sf~~Ygl~RK~~~ 171 (293)
T COG2962 150 ---------P----WVALALALSFGLYGLLRKKLK 171 (293)
T ss_pred ---------c----HHHHHHHHHHHHHHHHHHhcC
Confidence 2 566677788998887777654
No 17
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.59 E-value=1.2e-13 Score=125.86 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHH-HHhCCC--CCCcchHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWL-RRSGQP--IFGPMHARNLLVLRALVGFL 165 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~l 165 (285)
.++++++-+-++|-..+++.+..+...+.+ |..-.++-++.-.++..++. .+++.. ....++.++..++.+++...
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~ 91 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE 91 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence 568888888899999999998886644333 44444444443333333333 232221 11122334445556899999
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccc
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 245 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 245 (285)
++++...|++|++.+.++++..+.-+++++++++++|+|.++.+++|++++++|+.+++..+...+. +
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~---------~--- 159 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS---------D--- 159 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc---------c---
Confidence 9999999999999999999999999999999999999999999999999999999999887654321 0
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 246 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 246 ~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
+..+.+..+|++++++++++||+++++.+++.++.+
T Consensus 160 -~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~ 195 (334)
T PF06027_consen 160 -SSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP 195 (334)
T ss_pred -CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 113456899999999999999999999999887554
No 18
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.57 E-value=2.3e-13 Score=116.78 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 171 (285)
.+++.+.+++.--....+.|.++ +.+++.-++.+|..++.++++.+.+..+++ ..++.+..++.+|......+++||
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY 89 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFY 89 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHH
Confidence 57788888888888889999988 999999999999999999888777654432 255567888999999999999999
Q ss_pred HHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCC
Q 023258 172 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGS 251 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (285)
.+++++|.+.+..+.++.|+...+++.- +.++.+.+.+++.|+.++.-.+.. ...
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~ 144 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQS-------------------VWS 144 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCC-------------------cCc
Confidence 9999999999999999999999988765 667888888999999988654433 235
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 023258 252 DHMLAVLVGLFSSITGGISYCLIKAGANASDQ 283 (285)
Q Consensus 252 ~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~ 283 (285)
.++.|..+++.++.||++|.+..+|..+..++
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g 176 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHG 176 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCC
Confidence 68899999999999999999999998864443
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.55 E-value=3.6e-13 Score=121.55 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 171 (285)
+++++++++++||...+..|... +.++.++. |..++.+++..+....+.+....++.+...++.|+....++++++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 67899999999999999999853 77887775 777777666554433332223335556667777888889999999
Q ss_pred HHHhccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHHHHHhhccccccccccCCCCCCCccccc
Q 023258 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~----~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 246 (285)
.++++++.+.+..+.+ +.+++..+++.+++||+.++++ ++|++++++|++++...+.... +++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~------------~~~ 145 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA------------GIK 145 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc------------ccc
Confidence 9999999999999988 8889999999999999999999 9999999999988865432210 000
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 023258 247 NVRGSDHMLAVLVGLFSSITGGISYCLIKAG 277 (285)
Q Consensus 247 ~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l 277 (285)
+ ..+...|++++++++++|+.|.+..|+.
T Consensus 146 ~--~~~~~~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 146 S--EFNFKKGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred c--ccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0224679999999999999999999976
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.47 E-value=3.5e-12 Score=112.62 Aligned_cols=132 Identities=19% Similarity=0.160 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFL 165 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~l 165 (285)
..+|.+++++++++|+.+.+..|... ++.++ .....+++.++.++++++....++........+. .+..+.+...+
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999976 55664 4555577888888887776655433322333333 44444555689
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
++.+|++++++.+++.++++.++.|++++++++++++|+++..+++|.+++++|+.
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999873
No 21
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.37 E-value=8.4e-12 Score=96.92 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC----CcchHHHHHHHHHHHH-HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHH
Q 023258 125 FMRCTVTLILSYLWLRRSGQPIF----GPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 199 (285)
Q Consensus 125 ~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~l~~~~~~~-~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~ 199 (285)
.+|+.++.+++..+...+++... .+++.+...+..++.+ ..++.++++|+++.| +.++.+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57899998888777666543211 1223334455556655 488999999999999 58889999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 023258 200 ILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (285)
Q Consensus 200 ~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~ 229 (285)
++|||+++++|++++++++|+.++..++..
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999877654
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.37 E-value=5.5e-11 Score=107.42 Aligned_cols=136 Identities=12% Similarity=0.003 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFLSLF 168 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~l~~~ 168 (285)
..|.+++++++++|+.+.+..|... ++.++..+... .+++.+++.++..............+. .+.++.++..+++.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999875 66777776544 455555555554443321112222232 33444555678899
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
+|++++++++++.++++.+++|+++.++++++++|+++..+++|.+++++|+++.....
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999986543
No 23
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.35 E-value=5.3e-11 Score=107.61 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
..|.+++++++++|+.+.+..|... ++.++....+ ..+.+++.+......... ......+..++..++...+++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999965 5667765432 222233322222222211 1223344445556667788999
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+|++++++++++.++.+.++.|++++++++++++|+++..+++|.+++++|+++....
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999887653
No 24
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.33 E-value=1.2e-10 Score=105.20 Aligned_cols=135 Identities=15% Similarity=0.121 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC--Cc-chHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF--GP-MHARNLLVLRALVGFLS 166 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~l~ 166 (285)
..|.+++++++++|+.+.+..|... . .++.....+++.++.+++.++......... .. ..+...++++.+...++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999854 2 345566778888887777666554332211 12 23333444444456789
Q ss_pred HHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 167 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 167 ~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+.+|++++++.++++++++.++.|++++++++++++|+++..+++|.+++++|++++...
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988653
No 25
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.29 E-value=2.2e-10 Score=106.13 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHH-hCCCC--C--CcchHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQPI--F--GPMHARNLLVLRALVG 163 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~-~~~~~--~--~~~~~~~~l~~~~~~~ 163 (285)
..|.+++++++++|+++.++.|... ...++ ....++.++++.+.+.+.... .+... + ........++..+++.
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 4599999999999999999998865 44544 455666666655544333322 22111 1 0111112233344555
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
.+++.+|++++++.+++.+++..++.|++++++++++++|+++..+++|.+++++|++++..+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 6788889999999999999999999999999999999999999999999999999999987643
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.20 E-value=1.4e-10 Score=104.15 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHHHHHHHHHHhCCC-C-CCcchHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLF----ETVFMRCTVTLILSYLWLRRSGQP-I-FGPMHARNLLVLRALVG 163 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~ 163 (285)
..|.+++++++++|+.+.+..|... .+.++. ....+.++...+.+.++...++.. . ......+......++..
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 221 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAA-LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMI 221 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccc-cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 5688899999999999999988743 333332 233333333312222222222221 1 12234455566777777
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
.+++.++++++++.+++.++.+.++.|+++.+++++++||+++..+++|++++++|++++
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 899999999999999999999999999999999999999999999999999999999863
No 27
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.18 E-value=2.3e-09 Score=97.02 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHHH-HhCCC-------CCCcchHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQS--IPLFETVFMRCTVTLILSYLWLR-RSGQP-------IFGPMHARNLLVLR 159 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~-~~~~~-------~~~~~~~~~~l~~~ 159 (285)
..|.+++++++++|+.+.+..|...... .......++-++++.+.+..... ..+.. ......+...+.++
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4699999999999999999999864222 22233344444444333322221 11111 11223334444555
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 160 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 160 ~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
.+...+++.+|++++++.+++.++.+.++.|+++.++++++++|+++..+++|.+++++|+++...+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 566678999999999999999999999999999999999999999999999999999999998876543
No 28
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.06 E-value=2.6e-09 Score=96.77 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc------------chHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGP------------MHARNL 155 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~--~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~------------~~~~~~ 155 (285)
..|.+++++++++|+++.+..|... + +.++..+..+.+.++.++++++........... ...+..
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 5699999999999999999999876 5 789999999999988888877755432111000 001111
Q ss_pred HHHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 156 LVLRAL-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 156 l~~~~~-~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
.+..++ +..+.+.+++++++++++..++++.++.|++++++++++++|+++..+++|.+++++|+++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 112222 22233356678999999999999999999999999999999999999999999999999987654
No 29
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.05 E-value=9e-09 Score=93.08 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHHHHHHHHHHH
Q 023258 94 MCMALSSTIYFFMQVISDVFMVQS-IPLFETVFMRCTVTLILSYLWLRRSGQPIF--GPMHARNLLVLRALVGFLSLFSF 170 (285)
Q Consensus 94 l~~l~a~~~~a~~~v~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~ 170 (285)
+++++++++|+.+.+..|....+. .+......+-..++.+....... ...... .+...+..++..++...+++.++
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIAD-SSTSHMGQNPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHcc-CCcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998853111 22233333333333333221111 111111 11122344555566777999999
Q ss_pred HHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 171 VYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
++++++.+++.++++.++.|+++.++++++++|+++..+++|++++++|+.++...+.
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876554
No 30
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.05 E-value=8.9e-10 Score=99.64 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=103.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 149 PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
.++..+..+....+.+++++.+..|+.+++++..+++.++.-+|+..++.++-.||+++.+.++.++.+.||+++...+.
T Consensus 155 ~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 155 ATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 44556677777888899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 229 TTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
..+ ++........|.++++++|+.||+|.++.|+-...+
T Consensus 235 ~~~--------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e 273 (416)
T KOG2765|consen 235 KQN--------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE 273 (416)
T ss_pred ccc--------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 321 123446678999999999999999999999866544
No 31
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.99 E-value=4.3e-08 Score=87.10 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHH-HHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL 167 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~ 167 (285)
..|.+++++++++|+++.+..|... ..++..... +.+....++.......... .......+..+...++... +++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999854 566666666 3333222222222222211 2223334555555565554 799
Q ss_pred HHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
.++++++++.++..++.+.++.|+++.++++++++|+++..+++|..+++.|+.++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988754
No 32
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.97 E-value=1.2e-07 Score=86.09 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHH
Q 023258 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 198 (285)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~ 198 (285)
.|..+++..+....++..+.....+.. ..++..++..+..+++.+++..+-+.|++++|...-.++.+..|++++++++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~ 109 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGV 109 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH
Confidence 388999999998887776655544412 2233345566777888899999999999999999999999999999999999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 199 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 199 ~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
+++|+|.+++++++.++..+|+.+....+..... +.+........|+++.+++.++.|...+..+++-
T Consensus 110 l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~------------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~ 177 (303)
T PF08449_consen 110 LILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS------------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF 177 (303)
T ss_pred HhcCccccHHHHHHHHHHHhhHheeeeccccccc------------ccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776544211 0011112233499999999999999999999877
Q ss_pred ccCC
Q 023258 279 NASD 282 (285)
Q Consensus 279 ~~~~ 282 (285)
++.+
T Consensus 178 ~~~~ 181 (303)
T PF08449_consen 178 KKYG 181 (303)
T ss_pred HHhC
Confidence 5444
No 33
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.94 E-value=6.1e-08 Score=89.82 Aligned_cols=135 Identities=10% Similarity=0.111 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-C----------CCCc---
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQ-P----------IFGP--- 149 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~----------~~~~--- 149 (285)
..|.+++++++++|++..+..|..... +.++..+..+-..++.++++++...... . ....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 469999999999999999999997632 3567777766677787777776542211 0 0000
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 150 ~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
......++..++..++.+.+.|++++++++..+++..++-|+++.++++++++|+++..+++|.+++++|+++..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 011112223333334444455579999999999999999999999999999999999999999999999998753
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.94 E-value=2.5e-08 Score=90.07 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH---HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT---VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 166 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 166 (285)
.+|++++++++++|+.+.+..|.. +.+|....+..+. ++..++.... ++. ++...+ ..+..++.|++..++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-ILA-KPLKKY-AILLNILPGLMWGIG 224 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-hcc-cchHHH-HHHHHHHHHHHHHHH
Confidence 579999999999999999999974 4788888655554 3333222222 111 222222 333445577778888
Q ss_pred HHHHHHHHh-ccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHHHHhh
Q 023258 167 LFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF 224 (285)
Q Consensus 167 ~~~~~~al~-~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~----ig~~l~l~Gv~li~ 224 (285)
+.+|+.+.+ +.+++.+.++.+..|+.+.+++++++||+.+++++ +|.++++.|+.++.
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999999999999999999999999 99999999998874
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.93 E-value=7.4e-08 Score=78.15 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----cchH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA 152 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--------~~-----~~~~ 152 (285)
|.++++++.++.++..+..|....+ +.++.++..+-...+.++++++........ .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999886644 789999999999999888877655432211 00 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 153 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 153 ~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
+..++..+++.++.+++.+..++++++-..+++..+-.+++.++++++++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 5667778888889999999999999999999999999999999999999999999999999999999864
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.90 E-value=8.3e-08 Score=74.23 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 161 ~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
++..++++++.++++++|.+.+..+.++.++++++++++++|||++.++++|+.++++|+.++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44567889999999999999999999999999999999999999999999999999999998753
No 37
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.86 E-value=6.2e-08 Score=85.26 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 023258 150 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (285)
Q Consensus 150 ~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~ 229 (285)
++....+.+=+++..+.+.+.|+++++++++.-.++..+-.+++++++++++|+|+++++|+++++.++|+.++-.+...
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 33455666777888899999999999999999999999999999999999999999999999999999999998665544
Q ss_pred cccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 230 TQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
... .. .++..+.+....+...|+++.++++++.+++.+..+++-|+.+.|
T Consensus 94 ~~~----~~-~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s 143 (244)
T PF04142_consen 94 SSD----NS-SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS 143 (244)
T ss_pred ccc----cc-cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 210 00 000000111235578999999999999999999999988877654
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.85 E-value=1.1e-07 Score=82.01 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHH-HHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLF 168 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~ 168 (285)
..|..+++.++.||+.+-+..|... +..+--.-+.+-+.++.++.+++-.................+..+++. .+-+.
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 6799999999999999999998865 466667777888899999888887655444333444444444444444 57778
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
+-..+++++|...-.++.++.|.+.++.++++++|+++..||+++.+++++..
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999998887664
No 39
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.84 E-value=1.8e-07 Score=74.20 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023258 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170 (285)
Q Consensus 91 ~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 170 (285)
.|+++.+++.++-+...++.|... .+.+..+.... . ...+. . .. .....++++.++..+++++|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~-~~~~~----~-~~--------~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-F-IAALL----A-FG--------LALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-H-HHHHH----H-Hh--------ccHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999976 44433332211 1 00000 0 00 01234566777778999999
Q ss_pred HHHHhccchhHHHHHHhhHHHHHHHHHHH--HhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 171 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~~--~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
.+++++.|++.+..+.+..+.++.+.++. ++||+++..+++|++++++|++++..+
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999888885 899999999999999999999998754
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.59 E-value=2.3e-06 Score=78.40 Aligned_cols=140 Identities=19% Similarity=0.098 Sum_probs=107.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh-CCC---CCCcchHHHHHHHHHHHH
Q 023258 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS-GQP---IFGPMHARNLLVLRALVG 163 (285)
Q Consensus 88 ~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~-~~~---~~~~~~~~~~l~~~~~~~ 163 (285)
+..+|.++++++++++|+++++.+... .+.+..+....=.+++.++..+.+..- +.. ...+.+...+++...++.
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence 347899999999999999999999977 778888888777777777766544321 111 112333344444455555
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
+..+.+.-..+++.++....+=.-+..+++++++++++|+++++..++|.+++++|+++....+.
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 66666666788888888888877889999999999999999999999999999999998865543
No 41
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.6e-05 Score=70.84 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHHHHhC----C-CCCC-------cchHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSG----Q-PIFG-------PMHARNLL 156 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~----~-~~~~-------~~~~~~~l 156 (285)
=++.+++..+.++......|+....+ ..|....+.--++-.++....+.+.. + .... .++....+
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 35566777788888999999865444 66777777666666555544444331 1 1111 12122333
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCC
Q 023258 157 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGG 236 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~ 236 (285)
.+=++...+.+.++|.++.+++++.-.+...+-.+.++++..+++++|+++++|.++++.++|+.++-.+....
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~------ 169 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP------ 169 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC------
Confidence 44445556666799999999999999999999999999999999999999999999999999999986332221
Q ss_pred CCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 237 LVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
.++. ......+.+.|....+.+.+.-+++.+...++-|..+.+
T Consensus 170 ---~~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s 212 (345)
T KOG2234|consen 170 ---TGAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVS 212 (345)
T ss_pred ---CCcc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 0000 012245678999999999999999989888888776654
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.40 E-value=9.5e-06 Score=71.86 Aligned_cols=128 Identities=19% Similarity=0.279 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
..+|+++.+++.+.|..+.++.|. .+.+++...+-..+...+...++....++..+ .+. .+.-++.|+....+.+
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~-~k~-~~~nil~G~~w~ignl 210 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFF-EKK-SWKNILTGLIWGIGNL 210 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhccccccc-ccc-hHHhhHHHHHHHHHHH
Confidence 477999999999999999999998 46788887776654444433333333322222 233 3456788999999999
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+++.+.+....+.+-.+..+..++..+.+.+++||+=+++++.. .++|+++++
T Consensus 211 ~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~---~~~G~~Liv 263 (269)
T PF06800_consen 211 FYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY---TLIGLILIV 263 (269)
T ss_pred HHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH---HHHHHHHHH
Confidence 99999999999999999999999999999999999999887753 334444443
No 43
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.37 E-value=5.9e-09 Score=89.99 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
+.|+.++-+-++|-.........+...++ .|..-.|+-+..-+++..++..+|++. .+..|+..++.++...-+++
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~~~~~~hYilla~~DVEaNy 93 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY---IKAKWRHYILLAFVDVEANY 93 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH---HHHHHHHhhheeEEeecccE
Confidence 45665555555555444444444332323 356666777666666666666555422 22234446667777788888
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCccccccc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV 248 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (285)
+..-|.+|++...+.++-.-....+.+++|+++|-|.++.++.|.+++++|+.+++..+-.... ..
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd--------------~a 159 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD--------------RA 159 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc--------------cc
Confidence 8889999999999999999888899999999999999999999999999999999876654311 22
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 249 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 249 ~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
.+.+..+|+.+.+++|-+||+++++-+.+.|+.|
T Consensus 160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d 193 (336)
T KOG2766|consen 160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD 193 (336)
T ss_pred CCCCCccCcEEEEecceeeeeccccHHHHHhcCc
Confidence 3567889999999999999999999888877654
No 44
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.35 E-value=1.2e-06 Score=73.24 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCC
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 241 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~ 241 (285)
+.....+.|..|++.+++++++.+....--|+.+++|+++|+|+...++++.++++.|+.++...++.+
T Consensus 62 ~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~----------- 130 (290)
T KOG4314|consen 62 FWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH----------- 130 (290)
T ss_pred EEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-----------
Confidence 345678899999999999999999999999999999999999999999999999999999987655442
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 242 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 242 ~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
.+++.|+.+++.++...|.|-++.|+...
T Consensus 131 ---------a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 131 ---------ADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred ---------hhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999987543
No 45
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.32 E-value=2.7e-05 Score=70.62 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHH--hCCCCC------CcchHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRR--SGQPIF------GPMHARNLLVLRALV 162 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~------~~~~~~~~l~~~~~~ 162 (285)
|+++.+++.++-++..+..+... ..+.++.+++++-..++.++.++.... .+.... ..+..+..+++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998765 348899999999999988877666555 322111 133456677788888
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+.+++.+.++.+++.++-..+++..+--+++.+++.++++++++..+|+|+++.+.|+.+=...
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999876543
No 46
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.32 E-value=2.2e-06 Score=77.71 Aligned_cols=150 Identities=13% Similarity=0.040 Sum_probs=119.5
Q ss_pred HHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 023258 108 VISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG--PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT 183 (285)
Q Consensus 108 v~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~ 183 (285)
...|+.+. .---|..++.+++..+.+.++.....+-.+... .+..+..++..+++.+++.++-..++.+.|++...
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q 113 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ 113 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence 34477663 334477777776666666655544333222222 44567778888999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHH
Q 023258 184 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS 263 (285)
Q Consensus 184 ~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~lls 263 (285)
++-.+.|++++++++++.+|+.++..++.++.+..||.+....+. .-+++|.+.++.+
T Consensus 114 ~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~fn~~G~i~a~~s 171 (316)
T KOG1441|consen 114 TIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------SFNLFGFISAMIS 171 (316)
T ss_pred HHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------cccHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776433 3478999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 023258 264 SITGGISYCLIKAGAN 279 (285)
Q Consensus 264 a~~~A~~~v~~r~l~~ 279 (285)
-+..+..+++.+++-+
T Consensus 172 ~~~~al~~I~~~~ll~ 187 (316)
T KOG1441|consen 172 NLAFALRNILSKKLLT 187 (316)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999998764
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.24 E-value=4.2e-05 Score=67.80 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHh-hHHHHHHHHH
Q 023258 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAA 197 (285)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll~ 197 (285)
+|.+-.+--.+.+.++-+......+.....+...+...++.|++..+++..+|.++++++++.+..+.. ++-+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 444444433333444433333343332221235677888999999999999999999999999999975 6667799999
Q ss_pred HHHhcCcCcHHHHH----HHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 023258 198 RIILREKLKIAEIG----GLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 273 (285)
Q Consensus 198 ~~~l~e~~~~~~~i----g~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~ 273 (285)
.++|+|.-+..+++ +++++++|+++-...+..... .....+...|++..+++.+.|-.|.++
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~ 156 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVI 156 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999988876654 777788888877665543210 011345678999999999999999888
Q ss_pred HHhh
Q 023258 274 IKAG 277 (285)
Q Consensus 274 ~r~l 277 (285)
.|..
T Consensus 157 ~~~~ 160 (269)
T PF06800_consen 157 PKAF 160 (269)
T ss_pred HHhc
Confidence 7753
No 48
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.24 E-value=6.1e-05 Score=60.50 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHHHHHHHHHH
Q 023258 93 LMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSF 170 (285)
Q Consensus 93 ~l~~l~a~~~~a~~~v~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~ 170 (285)
+++++++..+-+....+.-.+. +..+ |+...++-+..+.+++..+....++ .....++..++.+++|+++.....+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 4567777777777777765554 4454 9999999999998887776655443 22223334456677999999999999
Q ss_pred HHHHhccchhHHHHHHhhHHHHHHH-HHHH----HhcCcCcHHHHHHHHHHHHHHHH
Q 023258 171 VYSIQRLPLSQATVLSFTAPIMASI-AARI----ILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~l-l~~~----~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+.+.+++++.++.+.-+.-+++.+ +..+ .-+++++..+++|+++.++|+++
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999988887766655554 4443 35789999999999999999874
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.21 E-value=0.0001 Score=67.84 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHHH---HHHHHhC---CCCCCcchHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM-RCTVTLILSY---LWLRRSG---QPIFGPMHARNLLVLRAL 161 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~-R~~~a~l~l~---~~~~~~~---~~~~~~~~~~~~l~~~~~ 161 (285)
...|+++.+++++||+...+-.|.. +..+ +|.-+. -.+++.++.. .....+. .-...+...+...++.|+
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV--KKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc--CCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 4679999999999999999999983 3333 222221 1112222211 1111110 001123445677888999
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHH-hhHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHhhccccccccc
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFRRILTTQAV 233 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~l~-~~~Pl~~~ll~~~~l~e~~-------~~~~~ig~~l~l~Gv~li~~~~~~~~~~ 233 (285)
+-.+++..++.++++++.+.+..+. .+.-++..++..++++|-. ...-++|++++++|+.+....+...+.
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~- 160 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER- 160 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc-
Confidence 9999999999999999999998875 5888999999999998754 245778889999999998875443211
Q ss_pred cCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 023258 234 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 272 (285)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v 272 (285)
++.++ +....+...|+++++++++.+++++.
T Consensus 161 -------~~~~~-~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 161 -------KMGIK-KAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred -------ccccc-cccccchHhHHHHHHHHHHHHHHHHH
Confidence 00000 01235678999999999999999994
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.21 E-value=0.00013 Score=64.65 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCcchHHHHHHHHHHHHHHHHHHHHH
Q 023258 97 ALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGFLSLFSFVY 172 (285)
Q Consensus 97 l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~l~~~~~~~ 172 (285)
+.-++.|+++..+-|. -++++.+-...-++.-.+..+.+........ ......+.++++.|....+...+|..
T Consensus 154 l~la~sf~~Ygl~RK~---~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 154 LALALSFGLYGLLRKK---LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHHh---cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 3445668888888777 4688888888777776665555544433222 13455678889999999999999999
Q ss_pred HHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 173 SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 173 al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
|-+++|.+...+++|..|.+..+++.++++|+++..++++-+++-+|+.+....+
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876544
No 51
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.19 E-value=8e-05 Score=57.38 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
+...++..+++.++..+++++|.+.|-.+ ..+.-+.+++++++++||++++.+++|+.++++|++++-.
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44556667888888999999999999666 6699999999999999999999999999999999999853
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.19 E-value=7.8e-05 Score=57.25 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHH-HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 156 LVLRALVGFLSLFSFVYSIQRLPLSQA-TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 156 l~~~~~~~~l~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
.+...++..+++++...+++++|.+.+ ++...+.-+.+.+++++++||++++.+++|+.++++|+.++
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 444566667888889999999999998 45566999999999999999999999999999999999886
No 53
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00026 Score=63.53 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCC-HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHHHHHHHHH
Q 023258 93 LMCMALSSTIYFFMQVISDVFMVQ-SIP-LFETVFMRCTVTLILSYLWLRRSGQP-IFGPMHARNLLVLRALVGFLSLFS 169 (285)
Q Consensus 93 ~l~~l~a~~~~a~~~v~~k~~~~~-~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~ 169 (285)
+..++.-+++-..+.+.-|++... +.+ .+.+..++.+...+.++..-+.+-.. +..+++..+.++-..+...+..+.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t 93 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT 93 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence 333444444444455566776533 222 33333477777666655443322111 112333444455556666666666
Q ss_pred HHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccC
Q 023258 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 249 (285)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (285)
-..+++++++..-+++-+..|+++++...+++|.++++..|.++....+|......++..+
T Consensus 94 ~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf------------------- 154 (314)
T KOG1444|consen 94 GSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF------------------- 154 (314)
T ss_pred ccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-------------------
Confidence 7789999999999999999999999999999999999999999999999998887776654
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023258 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANA 280 (285)
Q Consensus 250 ~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~ 280 (285)
+..|+.+++..-++-+.+.+..|+..+.
T Consensus 155 ---~~~gY~w~~~n~~~~a~~~v~~kk~vd~ 182 (314)
T KOG1444|consen 155 ---NLRGYSWALANCLTTAAFVVYVKKSVDS 182 (314)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3358999999999999999999976553
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.13 E-value=2.8e-05 Score=60.78 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
++..++..++++++..+++++|.+.|-.+ ..+.-+.++++++++++|+++..+++|+.++++|++++-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 45566677889999999999999999766 4699999999999999999999999999999999988744
No 55
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2.7e-05 Score=59.04 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 155 LLVLRALVGFLSLFSFVYSIQRLPLSQA-TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 155 ~l~~~~~~~~l~~~~~~~al~~~~~~~a-~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
..++..++..+++.++-.|++++|.+.| ++......+.+++.++++++|+++..+++++.++++|+..+-.
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3455666777888999999999999998 5557799999999999999999999999999999999988743
No 56
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.07 E-value=4.5e-05 Score=69.20 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHH-HHHHHHHHHH
Q 023258 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNL-LVLRALVGFL 165 (285)
Q Consensus 87 ~~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~l 165 (285)
.+...|++++++++++.+....+.|....+ .+. ...| .+... ....... ++.+.+...+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~--------------~~~~~--~~~l~~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR--------------AGSGG--RSYLRRPLWWIGLLLMVL 62 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc--------------ccchh--hHHHhhHHHHHHHHHHhc
Confidence 345789999999999999999999885311 000 0000 00000 0111111 2222334467
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+..+-+.|+.+.|.+..+.+..+.-++.++++.+++|||+++++++|..++++|+.+++.-
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 7788889999999999999999999999999999999999999999999999999887643
No 57
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.05 E-value=5.8e-05 Score=57.61 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHH-HHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 156 LVLRALVGFLSLFSFVYSIQRLPLSQAT-VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 156 l~~~~~~~~l~~~~~~~al~~~~~~~a~-~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
.+...++...++++...+++++|.+.+- +...+.-+.+.+++++++||+++..+++|+.++++|+..+-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3444666678888999999999999984 45669999999999999999999999999999999999873
No 58
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.04 E-value=1.6e-05 Score=61.19 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023258 98 LSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (285)
Q Consensus 98 ~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~ 177 (285)
+.+++||+.+.+.|... .+.++..-.. |..-....+ .+ .++ ..+.-+....+...||+.+.+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~L-----l~---------n~~-y~ipf~lNq~GSv~f~~~L~~~ 65 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKFL-----LL---------NPK-YIIPFLLNQSGSVLFFLLLGSA 65 (113)
T ss_pred eehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHHH-----HH---------hHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999999976 3333332221 322111110 00 122 2334455567888999999999
Q ss_pred chhHHHHHH-hhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 178 PLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 178 ~~~~a~~l~-~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
+.+.+..+. ++.-+++++.++++.+|..+++.++|++++++|+.+.
T Consensus 66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999995 7889999999999888888999999999999999764
No 59
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.02 E-value=0.00017 Score=63.68 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCcchHHHHHHHHHHHHHHHHHHH
Q 023258 94 MCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP---IFGPMHARNLLVLRALVGFLSLFSF 170 (285)
Q Consensus 94 l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~l~~~~~ 170 (285)
+++++++++|+.+.+..|... . .+......... ....+..+........ .......|..++..+++..+++.++
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~-~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~ 225 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALK-N-TDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-C-CCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999998854 2 23333222211 1111221111111111 1112234566666777788999999
Q ss_pred HHHHhccchhHHHHHHhhHHHHHHHHHHHH
Q 023258 171 VYSIQRLPLSQATVLSFTAPIMASIAARII 200 (285)
Q Consensus 171 ~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~ 200 (285)
++++++.|++.++++.++.|+++++++.++
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 60
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.96 E-value=0.00034 Score=61.76 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 023258 154 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 233 (285)
Q Consensus 154 ~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~ 233 (285)
...+.-+++...+..+.|.++.+++++.-..+....-+|+.+++.-+++++++.++|+|+....+|+.++...+.....
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~- 165 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT- 165 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-
Confidence 3455578888999999999999999999999999999999999999999999999999999999999988665432110
Q ss_pred cCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 234 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
...+ .-+..+.|+++.+++-+.-|+.+++-+|.-++.
T Consensus 166 -~p~~----------d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~ 202 (372)
T KOG3912|consen 166 -DPYT----------DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS 202 (372)
T ss_pred -CCcc----------ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 0000 113467899999999999999999988755443
No 61
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.87 E-value=1e-05 Score=70.67 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
..|...++.+++.-+...++.|+.. .+.+....+.+-.+++.+..++.+..-+. ..+..+++|++++..|++++++++
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHH
Confidence 4578888888888888888889975 66666665666556655554444332222 223344567778889999999999
Q ss_pred HHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 169 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
+...+++.-.++.+++..++.-+++.+.-.+++++.|+++.|.|+++++...+.+..
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 999999999999999999999999999999999999999999999988877666553
No 62
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00071 Score=60.35 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CcchHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQPIF------GPMHARNLLVLRAL 161 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~------~~~~~~~~l~~~~~ 161 (285)
...|++++...-++=|+.+...+.+.. ..++++.+++.-.++..+.-.......+.... ..++.++-+++...
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 468999999888888888887766543 47999999999988888776665444443221 25567888999999
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
++..++.+.|+-++.-++-.-++++.+--++..++++++++.+++..+|+|+.+.+.|+.+=.
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 999999999999999888888999999999999999999999999999999999999998743
No 63
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.65 E-value=0.00024 Score=63.33 Aligned_cols=141 Identities=14% Similarity=0.092 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC------CCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHH
Q 023258 120 LFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA 193 (285)
Q Consensus 120 p~~~~~~R~~~a~l~l~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~ 193 (285)
|+.++.+.+++-.++.....+..+.+ ....+...+.+.-.+++..+...+-.+++++++.+.-+..-+..++|+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI 124 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI 124 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence 77788777777666554443332221 122334455666788888888889999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHH
Q 023258 194 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 273 (285)
Q Consensus 194 ~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~ 273 (285)
.+++.++.=||+++.-..-..++.+|+++....+..+ +..|..+.+.++++-++-+.+
T Consensus 125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf----------------------~i~Gf~lv~~aS~~sGlRW~~ 182 (349)
T KOG1443|consen 125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQF----------------------NIEGFFLVLAASLLSGLRWAF 182 (349)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccce----------------------eehhHHHHHHHHHhhhhhHHH
Confidence 9999998889999999999999999999987665443 456777777777776666666
Q ss_pred HHhhcccCC
Q 023258 274 IKAGANASD 282 (285)
Q Consensus 274 ~r~l~~~~~ 282 (285)
.+.+.++.+
T Consensus 183 tQ~ll~~~~ 191 (349)
T KOG1443|consen 183 TQMLLRNQP 191 (349)
T ss_pred HHHHHhcCc
Confidence 665554443
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.64 E-value=0.00081 Score=50.19 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 023258 158 LRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALS 216 (285)
Q Consensus 158 ~~~~~~~l~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~ 216 (285)
....+..++++++..+++++|.+.+-.+ ..+..+.+.+++.+++||+++..+++|+.++
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3444667888899999999999999555 5699999999999999999999999998764
No 65
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.52 E-value=0.00039 Score=63.20 Aligned_cols=136 Identities=16% Similarity=0.260 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHH-HHHHHhCC-CC------CCcchHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFM---VQSIPLFETVFMRCTVTLILSY-LWLRRSGQ-PI------FGPMHARNLLV 157 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~-~~------~~~~~~~~~l~ 157 (285)
+..|.+.++++.+..+...++.|... ..+++++.+..+-.-++.+.++ |+...... .. ....... .++
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence 47899999999999999999999876 2469999999988888887777 76543221 11 1111122 223
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 158 ~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
+..++.++.+...|..+.++++-.=.+....=-+++.+.++++++++++....+|.+++++|+++=..
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 33367777888889999999998888888777788889999999999999999999999999988543
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.44 E-value=0.0016 Score=59.67 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHH---HhCCCCC---CcchHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQ---SIPLFETVFMRCTVTLILSYLWLR---RSGQPIF---GPMHARNLLVLRA 160 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~---~~~~~~~---~~~~~~~~l~~~~ 160 (285)
..|.+++++++++||.+.++.|.-... .+|--.+..+-.++..++++|.++ +.+...+ ...+ ...++..+
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q-~~~vv~~~ 324 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQ-FSLVVFNN 324 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCce-eEeeeHhh
Confidence 689999999999999999999885422 233333333344555555554332 2222222 2222 33334444
Q ss_pred H-HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 023258 161 L-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (285)
Q Consensus 161 ~-~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~ 229 (285)
+ ..+++-++|..|.-.+++-.+++-+.++.-.+++.-.++.+.+++...++|.+.+++|-+++...+..
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 4 44788999999999999999999999888889999999889999999999999999999998766543
No 67
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.40 E-value=0.0013 Score=56.78 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHHHHHHHHHHhCCC-C--CC-cchHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRC-TVTLILSYLWLRRSGQP-I--FG-PMHARNLLVLRALVGF 164 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~-~~a~l~l~~~~~~~~~~-~--~~-~~~~~~~l~~~~~~~~ 164 (285)
..|..+.+.+.++-++..+..++.....-..+..-.+.. ++..+............ . .. ..+.....+...+...
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 163 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV 163 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence 567777777888878888888775422211111111111 11111111111111110 0 00 1111233444556667
Q ss_pred HHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 165 l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+..+..+.+++.+...-++...+.++++.++++++++++++..+|+|+.+++.|+++
T Consensus 164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 7778889999999999999999999999999999999999999999999999988754
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.33 E-value=0.014 Score=53.91 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=88.3
Q ss_pred CchHHHHHHHHHHHHHHHHH-------HHHHHhhcCCCCHHHHHHHHHH---HHHHHH-HHHHH---HhCCCC--CC---
Q 023258 88 SRYSGLMCMALSSTIYFFMQ-------VISDVFMVQSIPLFETVFMRCT---VTLILS-YLWLR---RSGQPI--FG--- 148 (285)
Q Consensus 88 ~~~~G~l~~l~a~~~~a~~~-------v~~k~~~~~~~~p~~~~~~R~~---~a~l~l-~~~~~---~~~~~~--~~--- 148 (285)
+..+|++.++++.+.++++. +..+.....+.++.....-.++ ++.++. .+++. .+++.. ..
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 34789999999999999999 5554432245666665555554 333333 22222 122221 11
Q ss_pred -cchHHH----HHHHHHHHHHHHHHHHHHHHhccchhHHHH---HH-hhHHHHHHHHHHHHhcCcCc------HHHHHHH
Q 023258 149 -PMHARN----LLVLRALVGFLSLFSFVYSIQRLPLSQATV---LS-FTAPIMASIAARIILREKLK------IAEIGGL 213 (285)
Q Consensus 149 -~~~~~~----~l~~~~~~~~l~~~~~~~al~~~~~~~a~~---l~-~~~Pl~~~ll~~~~l~e~~~------~~~~ig~ 213 (285)
+++.+. ...+.|+.-.+++.++..+-...+.+.+.+ +. .+.-++..+-+. ++||+=+ +.-++|+
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~ 329 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC 329 (345)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence 111122 336667777888888888888887666555 66 566677777777 5998866 5667888
Q ss_pred HHHHHHHHHhhcc
Q 023258 214 ALSFFGVLFIFRR 226 (285)
Q Consensus 214 ~l~l~Gv~li~~~ 226 (285)
++.++|..++..+
T Consensus 330 vliI~g~~lig~~ 342 (345)
T PRK13499 330 VVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888887643
No 69
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.019 Score=46.43 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCC-cchHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFG-PMHARNLLVLRALVGFLSL 167 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~l~~ 167 (285)
...+++++++..+-.....+.-.+....-+|+.-.++-+..+.+++..+...+.+ +... ..+..++.+++|+++.+..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 4466777777777777776665544223358888888888877766665554322 2221 2333456677888887777
Q ss_pred HHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHh----cCcCcHHHHHHHHHHHHHHHHhh
Q 023258 168 FSFVYSIQRLPLSQATVL-SFTAPIMASIAARIIL----REKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 168 ~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l----~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
..-.....++.++....+ ..-+-++..++..+=+ +++++..+++|+++.++|++++-
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 777777888888776555 4555566666665543 47899999999999999955543
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.26 E-value=1.6e-05 Score=68.72 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 171 (285)
.++.+++-++.|+........ -+-+|.+-+.---+-+.++.+..++.. .+..+...+...++.|++..+++..++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT~GALifaiiv~~~~--~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTTLGALIFAIIVFLFV--SPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeee---cCCChhHhhhhccHHHHHHHHHHheee--cCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 678899999999999888644 245677766555555555544444442 233355566777888999999999999
Q ss_pred HHHhccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHHHHhhccccccccccCCCCCCCccccc
Q 023258 172 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 246 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~----ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 246 (285)
-|+++.+++.+..+.. ++-+-+.+++.+.++|..+..+. ++++++++|+++-...+... .+
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n----------k~---- 143 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN----------KE---- 143 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc----------cc----
Confidence 9999999999999975 77788999999999998887654 34555556665544333211 11
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023258 247 NVRGSDHMLAVLVGLFSSITGGISYCLIK 275 (285)
Q Consensus 247 ~~~~~~~~~G~l~~llsa~~~A~~~v~~r 275 (285)
..+..+.-.|+...+.+.+.|-.|.++.+
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeec
Confidence 11223345666666666666655555444
No 71
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.17 E-value=0.024 Score=51.78 Aligned_cols=174 Identities=9% Similarity=0.035 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH--HhCCC-----CCCcchHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR--RSGQP-----IFGPMHARNLLVLRAL 161 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~--~~~~~-----~~~~~~~~~~l~~~~~ 161 (285)
-..|+++..+++++-+...+-.|.. ++.+--..=....+++.+++ |+.. ..-+. ...+...+...++.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 3679999999999999999999884 44443333233344444333 3221 11111 1113345666777888
Q ss_pred HHHHHHHHHHHHHhccchhHHHH-HHhhHHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATV-LSFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRILTTQAV 233 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~-l~~~~Pl~~~ll~~~~l~-------e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~ 233 (285)
.-.++.+.|=.+++|+..+...- ...+.-++..++-.++.+ .+-....++|++++++|+.++...+...+.
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~- 160 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK- 160 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh-
Confidence 88899999999999999888644 345666777666555433 344567899999999999999887765422
Q ss_pred cCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023258 234 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK 275 (285)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r 275 (285)
+.. .+..+.+...|++.++++++..|+.++-..
T Consensus 161 -------~~~--~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 161 -------ELG--EEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred -------hhc--cchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 001 112335567999999999999888776554
No 72
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.03 Score=50.20 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHH
Q 023258 119 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 198 (285)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~ 198 (285)
++..+.+...+.+.++...++..++... ..+..++.....++...++..+.|.|++|++-=.-++--+.=-+-+++++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~-~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~ 128 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKEL-SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT 128 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccC-CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence 5677777777777777766555444333 344456667778888899999999999999887777777777777889999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 199 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 199 ~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
++.|.|.+..+.+...++-.|+.+-...+..... . +....+.++|+++....-+.=++.+....++-
T Consensus 129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~--------~-----~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSS--------S-----KSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHhcCccCcHHHHHHHHHHhheeeEEEecCCCCc--------c-----ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 9999999999999999999999776544332100 0 11224578999998888887777777666654
Q ss_pred c
Q 023258 279 N 279 (285)
Q Consensus 279 ~ 279 (285)
+
T Consensus 196 ~ 196 (327)
T KOG1581|consen 196 K 196 (327)
T ss_pred c
Confidence 3
No 73
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0028 Score=54.74 Aligned_cols=171 Identities=11% Similarity=0.140 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHH
Q 023258 94 MCMALSSTIYFFMQVISDVFMVQSI-----------PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALV 162 (285)
Q Consensus 94 l~~l~a~~~~a~~~v~~k~~~~~~~-----------~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (285)
+++..--+|+-.+.+.......... =+..+++++|..-.++.=+++.+++.....+.+ -+......+.
T Consensus 16 ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~-~~~YaAcs~s 94 (337)
T KOG1580|consen 16 ICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTP-TKMYAACSAS 94 (337)
T ss_pred EEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCc-chHHHHHHHH
Confidence 3444445566667776644332111 145566777776665554433344322222222 2334445555
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 242 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~ 242 (285)
..+.++.-..|++++|--...+--+.-|+-+++++.++.|.+.+|++..+.+++++||.+....+.-..
T Consensus 95 YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~----------- 163 (337)
T KOG1580|consen 95 YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG----------- 163 (337)
T ss_pred HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC-----------
Confidence 567778888999999999999999999999999999999999999999999999999999876544321
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023258 243 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA 280 (285)
Q Consensus 243 ~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~ 280 (285)
+..+....+|.++.+++--+-+..-.+..++.+.
T Consensus 164 ----g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~ 197 (337)
T KOG1580|consen 164 ----GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRAS 197 (337)
T ss_pred ----CCcccccchHHHHHHHHHHhcccchhHHHHHHHh
Confidence 1123456788899998877777766776666543
No 74
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.85 E-value=0.014 Score=51.59 Aligned_cols=183 Identities=10% Similarity=0.061 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 171 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 171 (285)
|++.++++++++|.+.+-.|.. +.-|++..-++-+....+.-++....++.+. ...+..++|.+-..++.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~-----f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFPP-----FYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCc-----ceeHHHhhhhhhhcCceeeh
Confidence 5788999999999999999984 4567777777766655554444444443322 34567888999999999999
Q ss_pred HHHhccchhHHHHHHhhHHHHHH-HHHHH-Hhc---CcC--cHHHHHHHHHHHHHHHHhhcccccccc---ccCCCC---
Q 023258 172 YSIQRLPLSQATVLSFTAPIMAS-IAARI-ILR---EKL--KIAEIGGLALSFFGVLFIFRRILTTQA---VSGGLV--- 238 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~~~Pl~~~-ll~~~-~l~---e~~--~~~~~ig~~l~l~Gv~li~~~~~~~~~---~~~~~~--- 238 (285)
-.++.++.+.+..+-++.-+++. ..+++ +++ |.+ .+..++|++++++|..+.......... -....+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~ 153 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI 153 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence 99999999999888776444333 33333 343 322 356778888888888775542221100 000000
Q ss_pred C-CCcc-------cccccCC-----CchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023258 239 K-PGEA-------ISLNVRG-----SDHMLAVLVGLFSSITGGISYCLIKAGANAS 281 (285)
Q Consensus 239 ~-~~~~-------~~~~~~~-----~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~ 281 (285)
+ .++. ++++..+ ...+.|+++++++++.|+...+=..++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0 0000 0001111 1478999999999999999877777665544
No 75
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0017 Score=57.20 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCC--CCCC------cchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHH
Q 023258 119 PLFETVFMRCTVTLILSYLWLRRSGQ--PIFG------PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 190 (285)
Q Consensus 119 ~p~~~~~~R~~~a~l~l~~~~~~~~~--~~~~------~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~P 190 (285)
.|..+.+++++....+-..+-+...+ ..+. +-+..+.+.-..+.-.++..+=.+++++.+++---+-.++..
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 48889999998876554444332111 1110 111111112122222233333356778888877777778899
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHH
Q 023258 191 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 270 (285)
Q Consensus 191 l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~ 270 (285)
+|++++.++++|+|-+..-..+..++++|-.+=+..+.. .+...+.|.++++++.++-|+.
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~-------------------~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS-------------------TGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccc-------------------cCccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999988888888887665443322 2355789999999999999999
Q ss_pred HHHHHhhc
Q 023258 271 YCLIKAGA 278 (285)
Q Consensus 271 ~v~~r~l~ 278 (285)
.+.+|+.-
T Consensus 201 aiytkk~l 208 (347)
T KOG1442|consen 201 AIYTKKVL 208 (347)
T ss_pred HHhhheec
Confidence 99988643
No 76
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.02 Score=49.60 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCcchHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRALV 162 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 162 (285)
..|-++.+++-.+=+.........- ...-+.-.+++.-.+.+.+.+..-..+.+... ...+..++-+.+.+++
T Consensus 171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~ 250 (337)
T KOG1580|consen 171 GFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIA 250 (337)
T ss_pred chHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4577777888777777777664422 12344455666666666655544333322210 0123456777888999
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
.++++.+.|.-+.+-++-.-+++..+--+|+++.+.++++.+++.++|+|.++.+.|...=+.
T Consensus 251 s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 251 SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 999999999999998888888899999999999999999999999999999999999876443
No 77
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00066 Score=61.02 Aligned_cols=122 Identities=20% Similarity=0.138 Sum_probs=90.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHH
Q 023258 87 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG-PMHARNLLVLRALVGFL 165 (285)
Q Consensus 87 ~~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l 165 (285)
++...|.++++.+.++.+.+..+-|....+ ... -..+.++.... .+. +..+.+.+...+
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-------~~~ra~~gg~~yl~~--~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-------SGLRAGEGGYGYLKE--PLWWAGMLTMIV 76 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-------hcccccCCCcchhhh--HHHHHHHHHHHH
Confidence 456889999999999999999998884411 110 00111111111 112 222334444567
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
+-.+-|.|+.+.|+...+.+..+.-++.++++.+++|||+++...+|.+++++|..+++.-..
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 778888899999999999999999999999999999999999999999999999988875443
No 78
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.084 Score=46.76 Aligned_cols=139 Identities=11% Similarity=0.142 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------CcchHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVIS-DVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIF-------GPMHARNLLVLRAL 161 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~-k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-------~~~~~~~~l~~~~~ 161 (285)
..|+.+.-.+-++=++-.-+. |......-+..+++++-+.++.++++......+.-.. .+.+.....++..+
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 456665555555544443333 3332245667888888888888777766655443221 13334567778888
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 228 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~ 228 (285)
.++++..+...-++.-++..++++...---++.+++++++..+++-...-+.++++.|+++=+.+..
T Consensus 269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 8888888888888889999999999999999999999999999999999999999999999877663
No 79
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.098 Score=47.26 Aligned_cols=136 Identities=12% Similarity=0.145 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCcchHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FGPMHARNLLVLRA 160 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--------~~~~~~~~~l~~~~ 160 (285)
..|+.+++...+.-+...+..|.-.+ .+.+-+.++++..+++.+.+..+....+... ......+..+.+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 46999999999999999999988543 4788899999999999887776665444311 12233456777888
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 161 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 161 ~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
++++.-.++-+++.+..++..-+++....-+.+.+...++.+++.++...+|+.++++|-.+=..
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 88888888889999999888888888666667777777777889999999999999998876543
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.39 E-value=0.64 Score=40.89 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHHHHhCC-CCCC---cchHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMR-CTVTLILSYLWLRRSGQ-PIFG---PMHARNLLVLRALVGF 164 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~ 164 (285)
..|+++.++++++-++..+........+-.+++.--.+ ++.+.++.++....+.. .... ...+-...+...+...
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 67999999999999999999966553333344333333 33444444333322221 1110 1122223344445556
Q ss_pred HHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 023258 165 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLAL 215 (285)
Q Consensus 165 l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l 215 (285)
++-++.-.-++|.+.-.=..-....-+++.++++++++.+++....+|..+
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 666677778899888888888889999999999999999999998888653
No 81
>PRK02237 hypothetical protein; Provisional
Probab=95.11 E-value=0.45 Score=36.13 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=37.8
Q ss_pred hhHH-HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 179 LSQA-TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 179 ~~~a-~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
.+.+ +..-..+.+...+..|.+-+.||++.+++|..++++|+.+|..
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 4444 2333467777788999999999999999999999999988854
No 82
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=94.63 E-value=0.35 Score=36.55 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 95 CMALSSTIYFFMQVISDVFMVQSI------PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 95 ~~l~a~~~~a~~~v~~k~~~~~~~------~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
-+++.+++|+..+.+.|... .+. +.-...++|-.....+ .|.+++ -.+..-.+..
T Consensus 7 ~lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l-----------------~w~Y~i-PFllNqcgSa 67 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL-----------------NWEYLI-PFLLNQCGSA 67 (125)
T ss_pred HHHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH-----------------hHHHHH-HHHHHHhhHH
Confidence 35677888999999999864 222 2333333333322111 112222 2223345667
Q ss_pred HHHHHHhccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 169 SFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 169 ~~~~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+||.-+++.|.+.+..+.+ +.-.|+.+.+..+-.|-..++-++|..++.+|+++.+
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 8889999999999888865 6778899999885555677888999999999998753
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.59 E-value=0.95 Score=40.90 Aligned_cols=134 Identities=18% Similarity=0.189 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHH-HHhCCCC---------CCcchHHH-
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQ----SIPLFETVFMRCTVTLILSYLWL-RRSGQPI---------FGPMHARN- 154 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~----~~~p~~~~~~R~~~a~l~l~~~~-~~~~~~~---------~~~~~~~~- 154 (285)
..|..+..+++++-|+-..+.+.+... .-+|+...+.-.-.-.+.+++.. .+.+... ..+...++
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 579999999999988888888776532 23466655544433333333332 2333211 11111222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 155 --LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 155 --~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
.+.++|+..+.--.+-|.-+..++.-..++..-.-=+.+.+++..+.+++++..-|+|+.+++.|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 223333333333344455556666666666666666888999999999999999999999999999876
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.0045 Score=53.83 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 169 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 169 (285)
.+|+...+.+.+.|-.+.++.+...-++.+...--..-++++++.+. ..+...+..+ ..++-.+.|+....++++
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~----~~~~~~~~~K-~t~~nii~G~~Wa~GNl~ 225 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG----FFKMEKRFNK-YTWLNIIPGLIWAIGNLF 225 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHh----hcccccchHH-HHHHHHhhHHHHHhhHHH
Confidence 67888888888888888888776433455555555555555544432 2222222233 345567788888999999
Q ss_pred HHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 170 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+++|-+..+.+.+=.+..+..+...+-+.+++|||=+++++.. ..+|+++++
T Consensus 226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~---v~iGiiliv 277 (288)
T COG4975 226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY---VIIGIILIV 277 (288)
T ss_pred HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh---hhhhHHHHH
Confidence 9999999999998888899999999999999999999998754 334444444
No 85
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=94.33 E-value=0.43 Score=36.19 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=41.0
Q ss_pred HhccchhHH-HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 174 IQRLPLSQA-TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 174 l~~~~~~~a-~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
++-.+.+.+ +..-....+...+..|.+-|++|++.+++|..++++|+.+|...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 333444444 33344777888889999999999999999999999999988754
No 86
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.21 E-value=0.46 Score=41.06 Aligned_cols=133 Identities=10% Similarity=0.105 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC------cchHHHHHHHHHHHH
Q 023258 91 SGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG------PMHARNLLVLRALVG 163 (285)
Q Consensus 91 ~G~l~~l~a~~~~a~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 163 (285)
.|++++..-++.-+......|... ..+.--++.+++..+++..+++.+-....++... +.......+..|++.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 477777777766666666666532 1467788899999999998888776654433222 223344667788888
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
+.-.++--|.++-++...-+.+..+.-.-.++-+.++++|+.+...+.+++++++...+-
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 777788888999999999899999999999999999999999999999999988655443
No 87
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.12 Score=45.97 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCcchHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQ-SIPLFETVFMRCTVTLILSYLWLRRSGQ-------PIFGPMHARNLLVLRAL 161 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~-------~~~~~~~~~~~l~~~~~ 161 (285)
..|+++++.++++-++..+..|..... +-.-+.+.++..+.+.++.++.+...+. +.....+.|..+.++|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 679999999999999999999875422 2335567777888888888887765542 11223445667777888
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 162 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 162 ~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
+++...+.-.+=++-+++-.=.+-...--.-=.+++..+++|--+...|-+-+++++|..+-..
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 8765555444445555443211111122233356777889999999999999888888766543
No 88
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=92.99 E-value=0.15 Score=44.93 Aligned_cols=134 Identities=12% Similarity=0.027 Sum_probs=86.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHH--HHHHHHHHHHH
Q 023258 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN--LLVLRALVGFL 165 (285)
Q Consensus 88 ~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~l 165 (285)
+..+|..++++++.+++.+++.-.++. .+.+-.+++..-.+++.++..+-....+.........+. ..+...++.++
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFl 241 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFL 241 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHH
Confidence 447899999999999999999999977 889999999988888888877665544433221111121 11112222222
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
.+.+.-.-++..++..-.+-.-+.-++..++ ..++=+.+|...++...+..|.++-.
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 2222223444444444433344555666666 55677799999999999999987653
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.67 E-value=8.2 Score=35.58 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHHHHHHHHHHh-CCCCC--C-cchHHHHHHHHHHHH
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT-VTLILSYLWLRRS-GQPIF--G-PMHARNLLVLRALVG 163 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~-~a~l~l~~~~~~~-~~~~~--~-~~~~~~~l~~~~~~~ 163 (285)
...|....+.++++-++.++.-..++..+-.+.++-=+|+- ++.++-+.-++.. +.+.. + ...+-+..++..+..
T Consensus 181 ~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~ 260 (345)
T KOG2234|consen 181 PFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLN 260 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHH
Confidence 36799999999999999999886655333344444333333 3333333323221 11110 0 111222333333333
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
..+-++.-.-++|..--.=..-..+..+++.+.++++++-+++....+|+.+++..+.+=.
T Consensus 261 a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 261 AVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred hccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 4444444444555555554555667888999999999999999999999999999888766
No 90
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=2.2 Score=32.19 Aligned_cols=40 Identities=13% Similarity=-0.052 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 187 FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 187 ~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
..+.+...+..+++-|.+|++.+|+|..++++|+.+|..+
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3666777788888889999999999999999999887754
No 91
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=90.58 E-value=5 Score=30.44 Aligned_cols=52 Identities=21% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHhccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 173 SIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 173 al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+.+..+++.--+++- .+-..-+.++.+++||++++..+.|.++.+.+++++.
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 444455666555654 3445556778899999999999999999998887764
No 92
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=89.52 E-value=2.9 Score=37.42 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHH---------HhCCC--CCCcchHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLR---------RSGQP--IFGPMHARNLLV 157 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~---------~~~~~--~~~~~~~~~~l~ 157 (285)
..|+.+..++.+.-+.+++....... .+-++-+.+++-..+...+++.... +..++ .+.........+
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 56888888999988888888866542 3778999999999888776654321 11110 000001122334
Q ss_pred HHHHHHHHHHHHHHHHHhccch----hHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 158 LRALVGFLSLFSFVYSIQRLPL----SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 158 ~~~~~~~l~~~~~~~al~~~~~----~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
..-++.++.++...-++..++. -+++++..+-=++..+++.+.++..+++..|+|..+.++|.++-...
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666555544444333 33556667788899999999999999999999999999999886543
No 93
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=87.31 E-value=17 Score=30.89 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWL-RRSGQPIFGPMHARNLLVLRALVGFLSLFSF 170 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 170 (285)
++++..+-+++.++...+.+... ...+...++..- +++.+++..+. +..+......+..++..++.++..++.+...
T Consensus 86 ~L~~~~if~~~~gi~~~f~~~~~-~~~gi~tli~~~-i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~ 163 (206)
T PF06570_consen 86 SLLFFGIFSLLFGIMGFFSPKNS-NQYGIITLILVS-IVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVI 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-ccccHHHHHHHH-HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666665555322 222333333222 33333333332 2232112222223333334444444455444
Q ss_pred HHHHhccchhH
Q 023258 171 VYSIQRLPLSQ 181 (285)
Q Consensus 171 ~~al~~~~~~~ 181 (285)
+.....+|+..
T Consensus 164 ~~~~~~lp~~i 174 (206)
T PF06570_consen 164 FVLTSFLPPVI 174 (206)
T ss_pred HHHHHHccccC
Confidence 44444466553
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=86.51 E-value=3.4 Score=35.34 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=62.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccccc----ccCC-CCCCCcccccccCCCchH
Q 023258 180 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA----VSGG-LVKPGEAISLNVRGSDHM 254 (285)
Q Consensus 180 ~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~ 254 (285)
-......+..++++++.++.+.++|.+..++++.++...|+......+..-.. ..|- ....++.........+.+
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~ 84 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPV 84 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHH
Confidence 34556677888999999999899998899999999988888754333221000 0000 000000000011223567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 255 LAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 255 ~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
.|....+.+.++-+...+..++..|..+
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKDGD 112 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence 7887777777777777787777665543
No 95
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.35 E-value=7.3 Score=33.85 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=72.6
Q ss_pred HHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccc
Q 023258 168 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN 247 (285)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 247 (285)
+.---+++|++...-++.-++..+..+....+++|.|++..+....++.++.-+...+++.....+
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~-------------- 148 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF-------------- 148 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH--------------
Confidence 333468999999999999999999999999999999999999999888888887777766532110
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 248 VRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 248 ~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
....--.|++|...-.+.-|.+....|+-.
T Consensus 149 -~~~~lN~GY~Wm~~NclssaafVL~mrkri 178 (309)
T COG5070 149 -KAQILNPGYLWMFTNCLSSAAFVLIMRKRI 178 (309)
T ss_pred -HhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence 001122477777777777788777777544
No 96
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=85.81 E-value=17 Score=32.72 Aligned_cols=135 Identities=15% Similarity=0.170 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHHHHH----H-hCCC----CCCcchHHHH---
Q 023258 89 RYSGLMCMALSSTIYFFMQVIS-DVFMVQSIPLFETVFMRCTVTLILSYLWLR----R-SGQP----IFGPMHARNL--- 155 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~-k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~----~-~~~~----~~~~~~~~~~--- 155 (285)
-..|.++.+.+-++-+.-.++- |++...+++|.+.+.+..+++..++-.+.. . .++. +.....++..
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 3579999999999999999988 445556899999999999988544432221 1 1111 1111112221
Q ss_pred ------HHHHHHHHHHHHHHHH-----HHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 156 ------LVLRALVGFLSLFSFV-----YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 156 ------l~~~~~~~~l~~~~~~-----~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
.+...+.++.....|| +--++.++++=.++-.+-..+.=+++.....|++...++.|.++-+.|+++-
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222221 2234467777777778777777778888889999999999999999999873
No 97
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.02 E-value=0.44 Score=42.43 Aligned_cols=70 Identities=10% Similarity=0.219 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 157 VLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~-~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+......+....+=.+|+++ +|.-.=.++.+-.++-+++++|+++|.|.+.+++.+.++..+|+++-...
T Consensus 68 ~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~ 138 (330)
T KOG1583|consen 68 AITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLF 138 (330)
T ss_pred heehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEee
Confidence 33334445556666778877 55555667778899999999999999999999999999999999886543
No 98
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.68 E-value=20 Score=32.13 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhc-CCCCH--HHHHHHHHHHHHHHHHHHHH-HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 023258 100 STIYFFMQVISDVFMV-QSIPL--FETVFMRCTVTLILSYLWLR-RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 175 (285)
Q Consensus 100 ~~~~a~~~v~~k~~~~-~~~~p--~~~~~~R~~~a~l~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~ 175 (285)
-+.+-.+..+..+... ++..| +.+++.++++-..+.++-+. ++.+++. ..|+..+..+.+......+--.++.
T Consensus 52 Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~---iP~rtY~~la~~t~gtmGLsn~Slg 128 (367)
T KOG1582|consen 52 FFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRV---IPWRTYVILAFLTVGTMGLSNGSLG 128 (367)
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeeccccee---cchhHhhhhHhhhhhccccCcCccc
Confidence 3445566666666542 35554 34555555544332222111 1111111 1233333344444444455555666
Q ss_pred ccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHH
Q 023258 176 RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHML 255 (285)
Q Consensus 176 ~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
|++--.-.+.-.+--+-+++.+.++-+.|.++.+.++..+..+|+++....+... ..+.+..
T Consensus 129 YLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------------------sPNF~~~ 190 (367)
T KOG1582|consen 129 YLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------------------SPNFNLI 190 (367)
T ss_pred cccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------------------CCCccee
Confidence 6655555555555556667788899999999999999999999999887766543 1244667
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhh
Q 023258 256 AVLVGLFSSITGGIS-YCLIKAG 277 (285)
Q Consensus 256 G~l~~llsa~~~A~~-~v~~r~l 277 (285)
|+.+.-.+-++-|+- ++.-|.+
T Consensus 191 Gv~mIsgALl~DA~iGNvQEk~m 213 (367)
T KOG1582|consen 191 GVMMISGALLADAVIGNVQEKAM 213 (367)
T ss_pred eHHHHHHHHHHHHHhhHHHHHHH
Confidence 877766666666554 4443433
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=74.61 E-value=21 Score=30.44 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=75.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----HH--HHHHhCCCCCC--cchHHHHHHHH
Q 023258 88 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILS----YL--WLRRSGQPIFG--PMHARNLLVLR 159 (285)
Q Consensus 88 ~~~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l----~~--~~~~~~~~~~~--~~~~~~~l~~~ 159 (285)
+...|+.+++.+++.-+.+.+.-|... .+.+--+..-+-...+++=+ .+ ++...+...+. ....|.-+.-.
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~i-GnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~ 210 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFI-GNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGA 210 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-ccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhH
Confidence 456899999999999999999999976 43332222221111111100 00 11122211100 01112222222
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 023258 160 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 229 (285)
Q Consensus 160 ~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~ 229 (285)
+........+...++..+.+-..++-+-+..--.+.+..++-+-..+..++.+..++.+|-+++..|...
T Consensus 211 A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 211 AGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 2222233344445666666555444444333344455555444567788899999999999999988754
No 100
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.96 E-value=35 Score=25.60 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=37.4
Q ss_pred ccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 176 RLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 176 ~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
-.+++.--+++- .+-.+-+.++.+.+||++++..+.+..+++.|++++.+
T Consensus 65 v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 65 VYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 344555444544 33344567788999999999999999999999998875
No 101
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=71.63 E-value=19 Score=32.61 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=43.4
Q ss_pred HHHH-HHHHHHHhccchhHHHHHHh-hHHHHHHHHHHHHhcC--cCcHHH----HHHHHHHHHHHHHhhcc
Q 023258 164 FLSL-FSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILRE--KLKIAE----IGGLALSFFGVLFIFRR 226 (285)
Q Consensus 164 ~l~~-~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e--~~~~~~----~ig~~l~l~Gv~li~~~ 226 (285)
...+ .+...|+++-++.....+++ ....++.+-+.++++| +.+..+ ..|.++.++||+++...
T Consensus 223 ~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~ 293 (300)
T PF05653_consen 223 AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSS 293 (300)
T ss_pred HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeecc
Confidence 3444 44457999999998877766 6677778888888886 455544 44556667777777543
No 102
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=69.41 E-value=70 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 255 LAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 255 ~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
-+....+++++++++.+.+-||.+
T Consensus 179 ~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356677889999999988888764
No 103
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=68.33 E-value=74 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=29.6
Q ss_pred HhhHHHHHHHHHHHHhcCcCc-------------HHHHHHHHHHHHHHHHhhc
Q 023258 186 SFTAPIMASIAARIILREKLK-------------IAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 186 ~~~~Pl~~~ll~~~~l~e~~~-------------~~~~ig~~l~l~Gv~li~~ 225 (285)
....|+...++.+.+.++|.. .+...+.++.++|++++..
T Consensus 159 i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~ 211 (214)
T PF11139_consen 159 IASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLGD 211 (214)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 346788888888888877763 2356688888899988764
No 104
>PRK11715 inner membrane protein; Provisional
Probab=67.76 E-value=1.2e+02 Score=29.18 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG 143 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~ 143 (285)
..|+++..+.-+.+-+.-+..|. .++|++-+.+-+..+...++.+..-.+
T Consensus 305 KYgiLFI~LTF~~fFlfE~~~~~----~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 305 KYAILFIALTFAAFFLFELLKKL----RIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc----eecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888888777777777777654 688999888887777666666655443
No 105
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=67.56 E-value=20 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.7
Q ss_pred cCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 202 REKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 202 ~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
..|+++.+-.|+.++++|+.++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578899999999999999998864
No 106
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=67.41 E-value=1.2e+02 Score=29.09 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 023258 90 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG 143 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~ 143 (285)
..|+++..+.-+.+.+.-+..|. .++|++-+.+-+..+...++.+..-.+
T Consensus 299 KYgiLFI~LTF~~fflfE~~~~~----~iHpiQY~LVGlAl~lFYlLLLSlSEh 348 (430)
T PF06123_consen 299 KYGILFIGLTFLAFFLFELLSKL----RIHPIQYLLVGLALVLFYLLLLSLSEH 348 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888888877777777777654 689999888877777666655555443
No 107
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=67.00 E-value=67 Score=26.72 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHH-HHHHHHHHHhhccc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGL-ALSFFGVLFIFRRI 227 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~-~l~l~Gv~li~~~~ 227 (285)
++....|+.+.+..+.-.|+...-...+....+.|+. .+++...+++.. ++.+.|..-+...+
T Consensus 7 ~~Pli~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~-~rkv~km~l~s~~~v~vFG~lTl~f~~ 70 (180)
T COG2917 7 FGPLILFFAAYKVYGIYAATAVLIVATVIQLAILWIK-YRKVEKMQLISGVVVVVFGGLTLIFHN 70 (180)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhchhHhhccC
Confidence 4455566666666666666666666777777777774 445555555443 33444544444333
No 108
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=66.60 E-value=12 Score=30.00 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=30.5
Q ss_pred HhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 023258 174 IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV 220 (285)
Q Consensus 174 l~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv 220 (285)
+..-++-.++++.|+.|+++.+++.++ -+++...+.+.++.+++|.
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg~ 114 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLGL 114 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Confidence 444455668889999999999998874 4455555555544444444
No 109
>COG4760 Predicted membrane protein [Function unknown]
Probab=64.47 E-value=92 Score=26.73 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHhccchhH---HHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 149 PMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQ---ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~-~l~~~~~~~al~~~~~~~---a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+.-...+.++-|++. ..++++-.+.+...+++. -+++.....+|.+++.+-----|.+.+.-.....+..|+.++.
T Consensus 110 pai~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~vYktGaIkvTpkF~r~v~a~~~Gvl~L~ 189 (276)
T COG4760 110 PAIVLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLVVYKTGAIKVTPKFTRMVVAATFGVLVLM 189 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccceEEeccccceeHHHHHHHHHHHHHHHHHHhcCceeecchhHHHHHHHHHHHHHHH
Confidence 333445555555444 455555444444444332 2444555566666666543334555555555666677776665
Q ss_pred cccc
Q 023258 225 RRIL 228 (285)
Q Consensus 225 ~~~~ 228 (285)
....
T Consensus 190 Lgn~ 193 (276)
T COG4760 190 LGNF 193 (276)
T ss_pred HHHH
Confidence 5443
No 110
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=60.24 E-value=16 Score=28.76 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=29.0
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 177 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
-..-.++++.|..|++.++++.+ +...+...++.+++.+++|..+
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~-l~~~~~~~e~~~~l~~l~~l~~ 109 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAV-LGSYLGGSELWAILGGLLGLAL 109 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888889888888876 4444444466665555555544
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=59.70 E-value=72 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 89 RYSGLMCMALSSTIYFFMQVISDVFMV 115 (285)
Q Consensus 89 ~~~G~l~~l~a~~~~a~~~v~~k~~~~ 115 (285)
|..|+++++++.+++|.+.+=..++.+
T Consensus 181 RivG~~LAv~aGvlyGs~fvPv~Yi~~ 207 (254)
T PF07857_consen 181 RIVGIILAVFAGVLYGSNFVPVIYIQD 207 (254)
T ss_pred hhHhHHHHHHHHHHHhcccchHHHHHh
Confidence 477999999999999999999999753
No 112
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=55.77 E-value=18 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=24.6
Q ss_pred HhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 023258 174 IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV 220 (285)
Q Consensus 174 l~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv 220 (285)
+..-..-.++++.|+.|++.++++..+. +.+...++.+++.+++|.
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~-~~~~~~e~~~~~~~~~g~ 114 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF-QLLFGSDLAALCGALLGG 114 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHH
Confidence 3334455567777888888777765533 333233444444444333
No 113
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.91 E-value=4.3 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.660 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFF 105 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~ 105 (285)
..|.++.+++.++|-+
T Consensus 26 ~~~~llll~ail~w~~ 41 (381)
T PF05297_consen 26 LFGLLLLLVAILVWFF 41 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888888864
No 114
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=52.86 E-value=25 Score=27.96 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 250 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 250 ~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
.+++.+|.++.=.-++.|++|++..|.+.+.+|+.
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~ededSG 135 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDEDEDSG 135 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCCCcccC
Confidence 35567888877777899999999999988777654
No 115
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=52.34 E-value=2.3 Score=38.45 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHh---CC---CCC--------CcchHHHHHHHHH
Q 023258 96 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWL-RRS---GQ---PIF--------GPMHARNLLVLRA 160 (285)
Q Consensus 96 ~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~-~~~---~~---~~~--------~~~~~~~~l~~~~ 160 (285)
|+++.+||+.-....|++. ..--..+...+-+.++.++..++. .-- +. ..+ .........+++|
T Consensus 1 M~itmlcwGSW~nt~kL~~-r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAE-RRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHH-hcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 3567899999999999975 322222345555666554443332 211 11 011 1233455677788
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHh-hHHHHHHHHHHHHhcCcCcHHHH--HHHHHHHHHHHH
Q 023258 161 LVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEI--GGLALSFFGVLF 222 (285)
Q Consensus 161 ~~~~l~~~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~--ig~~l~l~Gv~l 222 (285)
+...+++++..+|+...+.+++-.+.. +.-+..+++-++ +..|.++..+ .|..+.++.+++
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHH
Confidence 888899999999999998888777654 444445555555 5667665433 344444444433
No 116
>PRK10666 ammonium transporter; Provisional
Probab=51.98 E-value=2.2e+02 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 023258 151 HARNLLVLRALVGFLSLFSFVYSIQ 175 (285)
Q Consensus 151 ~~~~~l~~~~~~~~l~~~~~~~al~ 175 (285)
+......++.++.-.++..|.-+-.
T Consensus 218 hn~~~~~lGt~lLw~GW~gFN~Gs~ 242 (428)
T PRK10666 218 HNLPMVFTGTAILYIGWFGFNAGSA 242 (428)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhh
Confidence 3344556666666777777765443
No 117
>COG2323 Predicted membrane protein [Function unknown]
Probab=48.83 E-value=1.3e+02 Score=26.06 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHH
Q 023258 121 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 200 (285)
Q Consensus 121 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~ 200 (285)
+.-.++|.++..++++++++..+++....-...-.++...+....+...+... ++.-...+...+.-++..+++|+-
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~---i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDDD---VSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999888888888777654433333334444444444555544433 344444445555556666666665
Q ss_pred hcC
Q 023258 201 LRE 203 (285)
Q Consensus 201 l~e 203 (285)
.|-
T Consensus 81 ~ks 83 (224)
T COG2323 81 LKS 83 (224)
T ss_pred hcc
Confidence 543
No 118
>PRK11715 inner membrane protein; Provisional
Probab=48.39 E-value=2.6e+02 Score=26.92 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 153 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP-IMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 153 ~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~P-l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
....++.|+..++.+++...==.|++-..|-++..+.. ....+....++|.+-...-..+++.++-|++.+..
T Consensus 331 piQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lL 404 (436)
T PRK11715 331 PVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLL 404 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555556788888777766544 34445555667766566666666666767655543
No 119
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=48.27 E-value=71 Score=21.07 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 208 AEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 208 ~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
...+|.++.++|++++..|+.. .+..+++-...|..+-..|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPGpG---------------------------~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGPG---------------------------LLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCCc---------------------------HHHHHHHHHHHHHhhHHHHHHH
Confidence 3567889999999999888643 3455555556666666666543
No 120
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.74 E-value=1.1e+02 Score=28.50 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023258 103 YFFMQVISDVFMVQSIPLFETVFMRCTVTLI-----LSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 177 (285)
Q Consensus 103 ~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l-----~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~al~~~ 177 (285)
|+++.-.++.+. .++-..+.--..++++-+ +.++.+.+.+.+ ...+. .-++.=.+..++..+.|.++++.
T Consensus 201 Ws~slY~i~ql~-~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp-~d~RS---~~ilmWtLqli~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 201 WSISLYVIKQLA-DNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPP-KDPRS---QTILMWTLQLIGLVLAYFSVQHP 275 (452)
T ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCcch---hhHHHHHHHHHHHHHHHHhcccH
Confidence 666666666655 555555554444554432 223334444322 22221 11222223345666778888888
Q ss_pred chhHHHHHHh
Q 023258 178 PLSQATVLSF 187 (285)
Q Consensus 178 ~~~~a~~l~~ 187 (285)
..+.|.+|+.
T Consensus 276 ~~a~A~iI~~ 285 (452)
T KOG3817|consen 276 SAAIAAIIMV 285 (452)
T ss_pred HHHHHHHHHH
Confidence 8888766654
No 121
>PRK02935 hypothetical protein; Provisional
Probab=47.44 E-value=61 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.8
Q ss_pred hcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 201 LREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 201 l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
...|+++.+-.|+.+.++|..++..+-
T Consensus 5 ~ssKINkiRt~aL~lvfiG~~vMy~Gi 31 (110)
T PRK02935 5 YSNKINKIRTFALSLVFIGFIVMYLGI 31 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999988763
No 122
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=47.39 E-value=1.5e+02 Score=23.80 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 251 SDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 251 ~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
.+.....+..++++..|.-|....||+++
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 45678899999999999999999999865
No 123
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.04 E-value=1e+02 Score=28.32 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHHHhccchhHHHHHHh-hHHHHHHHHHHHHhcCc--CcHHH----HHHHHHHHHHHHHhh
Q 023258 168 FSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREK--LKIAE----IGGLALSFFGVLFIF 224 (285)
Q Consensus 168 ~~~~~al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~--~~~~~----~ig~~l~l~Gv~li~ 224 (285)
.....|++.-+.+..+.+++ ....++.+-+.+++||- .+..+ ..|.+.++.|++++-
T Consensus 242 ~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 242 NYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 44457999999999888887 77788888899999974 44444 455666667777763
No 124
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=40.19 E-value=3.4e+02 Score=26.05 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 158 LRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 158 ~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
.-+..+.+..++.++++...|...+.++..+.=+.-.++..+. -.....-+.|+++.++|.+++....
T Consensus 259 vpg~iG~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~E~~~--p~fGvigl~Gii~~iiG~~~L~~~~ 326 (436)
T COG1030 259 VPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVAEAFV--PGFGVIGLLGIILFIIGLLLLFPSG 326 (436)
T ss_pred chHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHhhhhccCCC
Confidence 3466777788888999999998887777665544444444331 1224666778888888888877555
No 125
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=39.94 E-value=2e+02 Score=23.23 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh-------CCCC-----CCcchHHHHHHHHHHHH-HHHHHHHHHHHhc--cch--
Q 023258 117 SIPLFETVFMRCTVTLILSYLWLRRS-------GQPI-----FGPMHARNLLVLRALVG-FLSLFSFVYSIQR--LPL-- 179 (285)
Q Consensus 117 ~~~p~~~~~~R~~~a~l~l~~~~~~~-------~~~~-----~~~~~~~~~l~~~~~~~-~l~~~~~~~al~~--~~~-- 179 (285)
.++|.++++.-++.-.+..+.+..-. ++++ ...++.+...+..|+.. ......|++.... .+.
T Consensus 3 Pl~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~ 82 (182)
T PF00689_consen 3 PLTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEET 82 (182)
T ss_dssp SS-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 35788888888776555444433211 1111 11334444445555544 4444555555542 111
Q ss_pred -----hHHHHHHhhHHHHHHHHHHHHhcC---------c--CcHHHHHHHHHHHHHHHHhhcc
Q 023258 180 -----SQATVLSFTAPIMASIAARIILRE---------K--LKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 180 -----~~a~~l~~~~Pl~~~ll~~~~l~e---------~--~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
..+.+..+..-++.-++-.+..|. + -++.-+.+++.+++..++++.-
T Consensus 83 ~~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~ 145 (182)
T PF00689_consen 83 NNDNLAQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYV 145 (182)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcc
Confidence 136666666666666666555554 2 2456667777776666655543
No 126
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=39.79 E-value=4.5e+02 Score=27.25 Aligned_cols=19 Identities=32% Similarity=0.214 Sum_probs=12.2
Q ss_pred cCcHHHHHHHHHHHHHHHH
Q 023258 204 KLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 204 ~~~~~~~ig~~l~l~Gv~l 222 (285)
.++.-+++++++.+++++.
T Consensus 147 ~~~~eei~s~~il~~~~l~ 165 (764)
T TIGR02865 147 LLTNEEIVSLIILIASVLT 165 (764)
T ss_pred CCcHhHHHHHHHHHHHHHH
Confidence 4777888886655554443
No 127
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=39.53 E-value=2.8e+02 Score=24.86 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHH
Q 023258 182 ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGL 261 (285)
Q Consensus 182 a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l 261 (285)
-+++....-++++++.+-...-|.+.+.--.+..+..|+.+...-......|.|.+ -...++|+.+.+
T Consensus 149 qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~l------------~~~gplgI~~sl 216 (274)
T PF12811_consen 149 QAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGSL------------RDGGPLGIGFSL 216 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------ccCChHHHHHHH
Confidence 34444444555566655544457776655555556666655443332221111111 122457777777
Q ss_pred HHHHHHHHH
Q 023258 262 FSSITGGIS 270 (285)
Q Consensus 262 lsa~~~A~~ 270 (285)
++...-+..
T Consensus 217 v~v~iAa~s 225 (274)
T PF12811_consen 217 VVVGIAALS 225 (274)
T ss_pred HHHHHHHHH
Confidence 765554443
No 128
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=39.51 E-value=96 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=18.6
Q ss_pred HHhcCcCcHHHHHHHHH------HHHHHHHhhccccc
Q 023258 199 IILREKLKIAEIGGLAL------SFFGVLFIFRRILT 229 (285)
Q Consensus 199 ~~l~e~~~~~~~ig~~l------~l~Gv~li~~~~~~ 229 (285)
+.-+|+++++.++|=.+ ..+|..++..|+..
T Consensus 24 L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~ 60 (89)
T PF04550_consen 24 LASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLP 60 (89)
T ss_pred HccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCC
Confidence 33479999887765443 34555565555543
No 129
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=39.08 E-value=3.5e+02 Score=25.73 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cc------hhHH---HHHHh-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 023258 152 ARNLLVLRALVGFLSLFSFVYSIQR--LP------LSQA---TVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFG 219 (285)
Q Consensus 152 ~~~~l~~~~~~~~l~~~~~~~al~~--~~------~~~a---~~l~~-~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~G 219 (285)
...+..++.++.-+++..|.-+-.. .+ .+.+ +.+.. ..-+...++.++ .+.|++.....- -+++|
T Consensus 204 n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~-~~gk~~~~~~~n--G~LAG 280 (404)
T TIGR03644 204 NLPLATLGTFILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKL-LFGKADLTMVLN--GALAG 280 (404)
T ss_pred CHHHHHHHHHHHHHHHHhhcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHH--HHHhh
Confidence 4455666666667777666644321 11 1111 11211 222333334433 345666555332 23555
Q ss_pred HHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 220 VLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 220 v~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
..-+ .+.... -..+...+.++++++.+-....+.||+ | -|.|
T Consensus 281 LVaI-Ta~~~~--------------------v~p~~A~iiG~iag~v~~~~~~~~~~~-~-iDD~ 322 (404)
T TIGR03644 281 LVAI-TAEPLT--------------------PSPLAATLIGAVGGVIVVFSIVLLDKL-K-IDDP 322 (404)
T ss_pred hhhh-ccccCC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCCC
Confidence 5555 333321 335667777777777665555555653 3 4544
No 130
>PRK00259 intracellular septation protein A; Reviewed
Probab=37.99 E-value=2.4e+02 Score=23.54 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHHHHhhc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALS--FFGVLFIFR 225 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~--l~Gv~li~~ 225 (285)
++....|+.+.+..+.-.|+...-..-+......++ .++|+.+.+|+..+++ +.|..+...
T Consensus 7 ~~P~i~Ffv~y~~~gi~~AT~~~i~a~~~~~~~~~~-~~~~v~~m~~i~~~lv~vfGglTl~l~ 69 (179)
T PRK00259 7 FLPLILFFAAYKLYGIYAATAALIVATVIQLAISWI-RYRKVEKMQLISLVVVVVFGGLTLVFH 69 (179)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HhCCcchhHHHHHHHHHHHHHHHHHhC
Confidence 344455666666666666666666666666666666 4557777766655443 334444443
No 131
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=37.57 E-value=1.5e+02 Score=21.02 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=13.7
Q ss_pred CcCcHHHHHHHHHHHHHHHH
Q 023258 203 EKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 203 e~~~~~~~ig~~l~l~Gv~l 222 (285)
-|.+..+|+|.++.++=+.-
T Consensus 18 trVT~n~~vg~~lt~~Li~A 37 (74)
T PF09964_consen 18 TRVTYNHYVGTILTVALIAA 37 (74)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 45689999998876543333
No 132
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=36.43 E-value=12 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHhccchhHHHHHHh-hHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHH
Q 023258 156 LVLRALVGFLSLFSFVY-SIQRLPLSQATVLSF-TAPIMASIAARIILREK-LKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 156 l~~~~~~~~l~~~~~~~-al~~~~~~~a~~l~~-~~Pl~~~ll~~~~l~e~-~~~~~~ig~~l~l~Gv~l 222 (285)
+.+..+...++.++|+| -+.-.+-+..+++.+ ...+++.++-+++||+| +-..-.++++++++-+.+
T Consensus 25 l~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv 94 (381)
T PF05297_consen 25 LLFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLV 94 (381)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 33344444445544443 233333333344433 33344444444555655 445666666666554433
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.24 E-value=66 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHhhcccC
Q 023258 253 HMLAVLVGLFSSITGGIS--YCLIKAGANAS 281 (285)
Q Consensus 253 ~~~G~l~~llsa~~~A~~--~v~~r~l~~~~ 281 (285)
...|+++++++++...+. +.++||+.|+.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456666666665544333 33445566554
No 134
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.56 E-value=14 Score=24.98 Aligned_cols=21 Identities=24% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 023258 210 IGGLALSFFGVLFIFRRILTT 230 (285)
Q Consensus 210 ~ig~~l~l~Gv~li~~~~~~~ 230 (285)
++|+++.+.|+.++..+.+..
T Consensus 2 iigi~Llv~GivLl~~G~~~~ 22 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFGYQAS 22 (59)
T ss_pred eeeehHHHHHHHHHHhhhhhh
Confidence 568889999999999876553
No 135
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=34.45 E-value=3.4e+02 Score=24.33 Aligned_cols=115 Identities=6% Similarity=0.067 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCCC--CcchHHHHHHHHHHHHHH
Q 023258 91 SGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIF--GPMHARNLLVLRALVGFL 165 (285)
Q Consensus 91 ~G~l~~l~a~~~~a~~~v~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~l 165 (285)
+|.+++++ ++|++.+.+...+- ..++.|-.-..+-.+....+..+++..++ ++.+ .-.-..+..+..++....
T Consensus 96 ng~ll~ll--~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~a 173 (314)
T COG3965 96 NGTLLALL--CLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAA 173 (314)
T ss_pred ccHHHHHH--HHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHH
Confidence 45554443 34666666665542 24677777777776655555544444333 1111 111223333444444444
Q ss_pred HHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcH
Q 023258 166 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKI 207 (285)
Q Consensus 166 ~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~ 207 (285)
-++.|..+.-......+-...|.-|++.++++.++..-+++.
T Consensus 174 l~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~ 215 (314)
T COG3965 174 LFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGT 215 (314)
T ss_pred HHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHH
Confidence 445555444444455566778899999999988876655543
No 136
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=34.20 E-value=3.3e+02 Score=24.12 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 023258 153 RNLLVLRALVGFLSLFSFV----YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 225 (285)
Q Consensus 153 ~~~l~~~~~~~~l~~~~~~----~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~ 225 (285)
++.++..++....+.+.+- +.+++-| ..+...+..-+...+...+-..++.++++++..+++++-++++..
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp--~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~ 128 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLENYP--IPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSF 128 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443332 3444444 223333344444444444444567888888777777666666554
No 137
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=33.96 E-value=4.6e+02 Score=25.64 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH----HHHhccch---hHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 150 MHARNLLVLRALVGFLSLFSFV----YSIQRLPL---SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 150 ~~~~~~l~~~~~~~~l~~~~~~----~al~~~~~---~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+.....+++.++.=++++.|. ++++.... ...+.+....--++-++.-.+...|.+.. ++.=++++-+.
T Consensus 224 ~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~---~~cnG~laGlV 300 (500)
T KOG0682|consen 224 PHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYLRHGKWSVI---GLCNGILAGLV 300 (500)
T ss_pred CCchhHHHHHHHHHHHHHHccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchh---hhHHHHHHHHH
Confidence 3445566666676677777764 33433333 22333333333333333333344444443 33334444444
Q ss_pred hhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 223 IFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
-..++-.. -..|-.++.++++++..=..+-+..++ +.|.|
T Consensus 301 aiT~gc~~--------------------v~pWaAiviG~va~~~~~~~~kL~~~l--kvDDp 340 (500)
T KOG0682|consen 301 AITPGCGV--------------------VEPWAAIVIGAVAGLVCNAANKLKERL--KVDDP 340 (500)
T ss_pred hhcCCCcc--------------------cCcHHHHHHhHHHHHHHHHHHHHHHHh--cCCcH
Confidence 44454432 235666677777766554434444433 34554
No 138
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=33.72 E-value=3.8e+02 Score=24.63 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=23.4
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHHHHH
Q 023258 177 LPLSQATVLSFTAPIMASIAARII--LREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~ll~~~~--l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+.+....+.....+...+...+. +-||.++++.+-....+.++..
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~ 99 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSC 99 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH
Confidence 445555554444444433332222 3478887777655555555433
No 139
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=32.49 E-value=2.9e+02 Score=22.88 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHH--HHHHHhhcc
Q 023258 163 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSF--FGVLFIFRR 226 (285)
Q Consensus 163 ~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l--~Gv~li~~~ 226 (285)
.++...+|+...+..+.-.|+...-...+...+..++ .++|++...|++.++++ .|..++...
T Consensus 6 d~~P~i~Ffv~y~~~~i~~At~~~i~~~~~~v~~~~~-~~r~v~~~~~is~~lv~vfG~lTl~~~d 70 (176)
T PF04279_consen 6 DFGPLILFFVVYKTYGIFVATAVLIVATLAQVAYSWI-RRRKVPKMQWISLVLVLVFGGLTLLFHD 70 (176)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-HhCcCchhHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666777666777777777777 44588888877655533 344455443
No 140
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=32.33 E-value=71 Score=21.87 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 250 GSDHMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 250 ~~~~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
.++..+|.++.-.-++.|+.|++..+.+.+
T Consensus 29 ls~~~LgwIL~gvf~liw~ly~~~~~~l~~ 58 (67)
T PLN00082 29 VSNGKLTWILVGVTALIWALYFSYSSTLPE 58 (67)
T ss_pred ccCchhhhHHHHHHHHHHHHHhheecccCC
Confidence 355678888888888999999998887766
No 141
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=30.83 E-value=52 Score=25.72 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 251 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 251 ~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
+++.+|.++.=.-++.|+.|++..+.+.+.+|+.
T Consensus 101 sn~~LgwIL~gVf~lIWslYf~~~~~l~edeDSG 134 (137)
T PLN00092 101 SNNLLGWILLGVFGLIWSLYFVYTSTLEEDEESG 134 (137)
T ss_pred cCcchhhHHHhHHHHHHHHHheeecccCcccccc
Confidence 4566777777777789999999998887766654
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.57 E-value=94 Score=25.74 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhccc
Q 023258 210 IGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 210 ~ig~~l~l~Gv~li~~~~ 227 (285)
++|++++..|+..++...
T Consensus 13 ilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 13 ILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666555443
No 143
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.34 E-value=3.4e+02 Score=23.02 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH--HHH-hCCCCCCcchHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLW--LRR-SGQPIFGPMHARNLLVLRALVGFLSLF 168 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~ 168 (285)
++++.-+-+++-|++..+.+.+ +..+-..++..-...++.+.... +.+ +..+ ..|.+++..++......+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA--~~~GlItlll~a~vgGfamy~my~y~yr~~ad~--sqr~~~~K~~lv~~~sm~lWi 176 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNA--QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADN--SQRPGTWKYLLVAVLSMLLWI 176 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHhhhHHHHHHHHHHHHhhccc--ccCCchHHHHHHHHHHHHHHH
Confidence 4555555566677777776653 34444444443333333222222 221 2211 122233444445555556666
Q ss_pred HHHHHHhccchhH
Q 023258 169 SFVYSIQRLPLSQ 181 (285)
Q Consensus 169 ~~~~al~~~~~~~ 181 (285)
+.+.+-..+|++.
T Consensus 177 ~v~i~t~~lPtsl 189 (226)
T COG4858 177 AVMIATVFLPTSL 189 (226)
T ss_pred HHHHHHhhCCCcC
Confidence 6667777777665
No 144
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.99 E-value=1.1e+02 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 189 APIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 189 ~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
.|++..++.-.++.+++....+.-+.+.++|+++=
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 45555555555577777655455666666666553
No 145
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=28.64 E-value=59 Score=25.88 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHh
Q 023258 87 GSRYSGLMCMALSSTIYFFMQVISDVF 113 (285)
Q Consensus 87 ~~~~~G~l~~l~a~~~~a~~~v~~k~~ 113 (285)
+++..|+++.-+..++|+++++..|-+
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l 128 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTL 128 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhcccc
Confidence 456889999999999999999998774
No 146
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.23 E-value=2.7e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023258 151 HARNLLVLRALVGFLSLFSFVYSIQR 176 (285)
Q Consensus 151 ~~~~~l~~~~~~~~l~~~~~~~al~~ 176 (285)
+.+..-+++|+........++|++-+
T Consensus 83 ~~f~~~f~~Gl~tyVl~Wtf~Y~lv~ 108 (110)
T KOG4455|consen 83 NLFTESFLGGLTTYVLAWTFFYGLVH 108 (110)
T ss_pred HHHHHHHhchHHHHHHHHHHHhhhhc
Confidence 44555667777777666677777654
No 147
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.64 E-value=84 Score=26.57 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHhcCcCcHHH
Q 023258 188 TAPIMASIAARIILREKLKIAE 209 (285)
Q Consensus 188 ~~Pl~~~ll~~~~l~e~~~~~~ 209 (285)
+.-+++..++.+.|.+-.++..
T Consensus 17 ~~f~ligaIGLlRfPD~YtRLH 38 (197)
T PRK12585 17 GLLSILAAIGVIRLPDVYTRTH 38 (197)
T ss_pred HHHHHHHHHHHHhcCcHHHHhh
Confidence 3334444455555555555554
No 148
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=27.43 E-value=5.6e+02 Score=24.56 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 023258 91 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILS 135 (285)
Q Consensus 91 ~G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l 135 (285)
-++.++++-....++.....-++..+++++..+...|.+.+..-+
T Consensus 263 as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl 307 (432)
T PF06963_consen 263 ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGL 307 (432)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 456666666666677777788877689999999999987765433
No 149
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=27.12 E-value=3.7e+02 Score=22.42 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHH--HHHHHHHhhc
Q 023258 164 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLAL--SFFGVLFIFR 225 (285)
Q Consensus 164 ~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l--~l~Gv~li~~ 225 (285)
++....|+.+.++.+.-.|+...-...+...+..++ .++|+++.+|+..++ .+.|..+...
T Consensus 7 ~~Pli~Ff~~y~~~~I~~AT~~~~vat~~~~~~~~~-~~~~v~~m~~is~~lv~vFGglTl~~~ 69 (178)
T TIGR00997 7 LLPLIVFFATYKMTGIFAATIALLVATIIAIGLSYV-KYKKVEKMQWISFVLIVVFGGLTLIFH 69 (178)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555555555555666666666666777776 445888888876544 3344444443
No 150
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=26.32 E-value=4.1e+02 Score=23.71 Aligned_cols=21 Identities=0% Similarity=0.426 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 023258 117 SIPLFETVFMRCTVTLILSYL 137 (285)
Q Consensus 117 ~~~p~~~~~~R~~~a~l~l~~ 137 (285)
..+.+.....+.+++.+....
T Consensus 54 ~~~~~~~~~~k~l~s~lmv~i 74 (293)
T PF03419_consen 54 PLSFLYSILFKLLISVLMVLI 74 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 344444555565555544443
No 151
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=25.40 E-value=6e+02 Score=24.24 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccchhH--HHHHHh-----hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 149 PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQ--ATVLSF-----TAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~--a~~l~~-----~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
+++.....+++....-++++.|.-+=....-.. -+.++. ..-+-.+++.|+. +.|++..-...- +++|++
T Consensus 193 ~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~-~~Kp~~lg~~sG--~vAGLV 269 (409)
T COG0004 193 PPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLR-NGKPSLLGAASG--AVAGLV 269 (409)
T ss_pred CCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhhhhhH--HHhHHH
Confidence 455566777777777777777753222211111 111111 2223334444454 677776544432 344554
Q ss_pred Hh
Q 023258 222 FI 223 (285)
Q Consensus 222 li 223 (285)
-|
T Consensus 270 aI 271 (409)
T COG0004 270 AI 271 (409)
T ss_pred hc
Confidence 44
No 152
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=25.20 E-value=4.5e+02 Score=22.76 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023258 253 HMLAVLVGLFSSITGGISYCLIKAGANA 280 (285)
Q Consensus 253 ~~~G~l~~llsa~~~A~~~v~~r~l~~~ 280 (285)
...|+.+..++++....|.+..|+++++
T Consensus 100 a~l~ya~~~la~~~a~lyL~~~~~lk~k 127 (243)
T TIGR03144 100 MILSYAALLVGSLLSIAYLLKTRKQNLE 127 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666666666555555555665543
No 153
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=24.57 E-value=4e+02 Score=21.89 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=3.3
Q ss_pred HHHHhhHH
Q 023258 183 TVLSFTAP 190 (285)
Q Consensus 183 ~~l~~~~P 190 (285)
....+..|
T Consensus 61 ~~~~~~~P 68 (194)
T PF07698_consen 61 SYFPYLIP 68 (194)
T ss_pred hhhhhhhH
Confidence 33344444
No 154
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=24.13 E-value=5.7e+02 Score=23.55 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 023258 92 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYL 137 (285)
Q Consensus 92 G~l~~l~a~~~~a~~~v~~k~~~~~~~~p~~~~~~R~~~a~l~l~~ 137 (285)
.....+.+++.+....-+.+....++......-..+.+++++++++
T Consensus 8 l~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~l 53 (356)
T COG4956 8 LLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFL 53 (356)
T ss_pred HHHHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHH
Confidence 4445556666666664444443334566666666665555544443
No 155
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.12 E-value=1.8e+02 Score=19.30 Aligned_cols=31 Identities=6% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHhhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 023258 185 LSFTAPIMASIAARIILREKLKIAEIGGLAL 215 (285)
Q Consensus 185 l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l 215 (285)
++...-++.+++.+++-||+.+.+..-+.++
T Consensus 8 ~Y~ig~~is~~iT~flskDs~~iRllsa~lI 38 (55)
T PF10753_consen 8 FYAIGAVISALITFFLSKDSLRIRLLSAILI 38 (55)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3446667888888898899777776655443
No 156
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=23.57 E-value=5.9e+02 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=17.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 023258 180 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLA 214 (285)
Q Consensus 180 ~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~ 214 (285)
+..+.+.-...++..+....+++-.++...+.|++
T Consensus 273 gl~a~ial~~~v~~~l~~~~l~g~~l~l~siagli 307 (397)
T TIGR01129 273 GLIAAIALVINIVLILAILSAFGATLTLPGIAGLI 307 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 33333333333444444444566667766665544
No 157
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=23.28 E-value=3.7e+02 Score=28.74 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=27.8
Q ss_pred HHHhccchhHHHHHHhhHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 172 YSIQRLPLSQATVLSFTAP--IMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~~~P--l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
.+.++=+....-+++.+.| ++.++++.++.+..++..-.+|++ +++|+.
T Consensus 879 L~~~F~S~~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i-~L~GIv 929 (1021)
T PF00873_consen 879 LAAQFESFRQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGII-ALIGIV 929 (1021)
T ss_dssp HHHHTTSSSTHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHH-HHHHHH
T ss_pred HHHHhcceeeeEEEEeccchhhHHHHHHHhhccccccccceehHH-HHHHHH
Confidence 4444555555556666666 345556666666666666666543 455554
No 158
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=23.15 E-value=4.7e+02 Score=22.21 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 023258 254 MLAVLVGLFSSITGGISYCLIKAGA 278 (285)
Q Consensus 254 ~~G~l~~llsa~~~A~~~v~~r~l~ 278 (285)
+-.+.+.+++++..|.-+.+-|+..
T Consensus 193 L~pi~l~IiGav~lalRfylkkk~N 217 (226)
T COG4858 193 LPPIALTIIGAVILALRFYLKKKKN 217 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788899999999888877654
No 159
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=23.03 E-value=4.6e+02 Score=28.13 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHhccchhHHHHHHhhHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 170 FVYSIQRLPLSQATVLSFTAP--IMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 170 ~~~al~~~~~~~a~~l~~~~P--l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
...+.++-+.-...+++.+.| ++.++++.++++..++..-++|++ +++|+..
T Consensus 865 liL~~~F~S~~~pliI~~tIPlal~G~~~~L~l~g~~l~~~s~iG~i-~L~GIvv 918 (1025)
T PRK10614 865 IVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIM-LLIGIVK 918 (1025)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHH-HHHHHHH
Confidence 334455555555556666666 345566666677777777666643 5556544
No 160
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=22.80 E-value=1.7e+02 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHHHHHHHhcCcCcHHHHHH
Q 023258 184 VLSFTAPIMASIAARIILREKLKIAEIGG 212 (285)
Q Consensus 184 ~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig 212 (285)
++=.+.|+..+++.++++|+|.+..+++.
T Consensus 228 I~P~llPl~~~~~~y~llkKk~~~~~li~ 256 (271)
T TIGR00828 228 LMPGLLPLGLTLLMYWLLRKKVNPVLLIG 256 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33457788888888888888866555543
No 161
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=22.77 E-value=2.6e+02 Score=19.05 Aligned_cols=58 Identities=21% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 023258 208 AEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 272 (285)
Q Consensus 208 ~~~ig~~l~l~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v 272 (285)
+..+++.+.+.|+.+........ +..+.+..-+ + .-..-+.|.++.+.+.+....+.+
T Consensus 3 ~~~l~~~~~llg~~~l~i~~~~~-----syVd~~G~L~-E-pFfLiPlg~l~~~~g~~~~i~~~~ 60 (63)
T PF13127_consen 3 KYILSLILLLLGVVCLFIFNIIG-----SYVDEDGVLH-E-PFFLIPLGYLFLLIGIISLIIYLI 60 (63)
T ss_pred chHHHHHHHHHHHHHHHHHhccc-----ceECCCCeEe-c-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888876544331 2222111110 0 112357888888888777655443
No 162
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=22.59 E-value=1.1e+02 Score=23.66 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 251 SDHMLAVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 251 ~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
+++.+|.++.=.-++.|+.|++..|.+.+.+|
T Consensus 91 sn~~LgwIL~gVf~liw~ly~~~~~~l~~~ed 122 (128)
T PLN00077 91 SNNLLGWILLGVFGLIWSLYTTYTSDLPEDEE 122 (128)
T ss_pred cCchhhHHHHhHHHHHHHHHhheecccCCccc
Confidence 45677877777778899999999998876554
No 163
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.03 E-value=4.8e+02 Score=28.03 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHhccchhHHHHHHhhHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 172 YSIQRLPLSQATVLSFTAP--IMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 172 ~al~~~~~~~a~~l~~~~P--l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.++++-+.-..-++..+.| ++.++++.++.+..++..-.+| ++.++|+.+
T Consensus 861 l~~~f~S~~~pliI~~~iPla~~G~~~~L~i~~~~l~~~s~~G-~i~L~GivV 912 (1017)
T PRK09579 861 LAAQFESFRDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVG-LVTLIGLIS 912 (1017)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH-HHHHHHHHH
Confidence 3344444444455555555 3445555566677777777766 345566544
No 164
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.03 E-value=6.6e+02 Score=27.92 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhc
Q 023258 190 PIMASIAARIILR 202 (285)
Q Consensus 190 Pl~~~ll~~~~l~ 202 (285)
|++.++.+|++++
T Consensus 87 P~LL~~~a~~l~R 99 (1355)
T PRK10263 87 PVIIVGGCWFAWR 99 (1355)
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444333
No 165
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.66 E-value=3.3e+02 Score=28.25 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=28.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 180 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 180 ~~a~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
+.+.++..+.|+-.+.++...+.+|.+...+.+.+..++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 55667777888888888777766665444555555555565543
No 166
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=20.58 E-value=8.8e+02 Score=24.39 Aligned_cols=22 Identities=9% Similarity=-0.084 Sum_probs=11.6
Q ss_pred CcHHHHH-HHHHHHHHHHHhhcc
Q 023258 205 LKIAEIG-GLALSFFGVLFIFRR 226 (285)
Q Consensus 205 ~~~~~~i-g~~l~l~Gv~li~~~ 226 (285)
+++.-.. ...+.++|+++++..
T Consensus 224 ~sr~~~~~~~~~~~~g~yl~~~~ 246 (679)
T TIGR02916 224 VSREMAFHSATLLGAGLYLLAMA 246 (679)
T ss_pred echHHHHHHHHHHHHHHHHHHHH
Confidence 3443333 445566777776543
No 167
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=20.28 E-value=6.2e+02 Score=22.51 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023258 253 HMLAVLVGLFSSITGGIS 270 (285)
Q Consensus 253 ~~~G~l~~llsa~~~A~~ 270 (285)
+.+|-+++++.+.+|+..
T Consensus 178 SFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 178 SFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457889999999998874
No 168
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=20.25 E-value=2.1e+02 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHhhHHHHHHHHHHHHhcCcCcHHHHHHH
Q 023258 184 VLSFTAPIMASIAARIILREKLKIAEIGGL 213 (285)
Q Consensus 184 ~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~ 213 (285)
++=.+.|+..+++.++++|++.+...++.+
T Consensus 238 I~P~lLPl~~~~~~y~llkKk~~~~~li~~ 267 (282)
T PRK11103 238 LMPGLVPLLLTFACMWLLRKKVNALWIIVG 267 (282)
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 334567777777788888888665555443
No 169
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=20.21 E-value=7.3e+02 Score=23.30 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHH-----HHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 149 PMHARNLLVLRALVGFLSLFSFVYSIQRL--PLSQA-----TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~~l~~~~~~~al~~~--~~~~a-----~~l~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
+.+......++.++...++..|.-+-... ..+.. +.+....-.++.++...+.+.|++.....- -+++|.+
T Consensus 186 ~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~n--G~laGlV 263 (399)
T PF00909_consen 186 PPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICN--GALAGLV 263 (399)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHH--HHHHHHH
T ss_pred CCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhh--hhhhhhh
Confidence 34445566777777778888777433322 22222 222222222333333333556666554433 2345555
Q ss_pred HhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHH-HHHHhh
Q 023258 222 FIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-CLIKAG 277 (285)
Q Consensus 222 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~-v~~r~l 277 (285)
-+ .+.... -..+...+.++++++..-..+ .+.+|+
T Consensus 264 ai-ta~~~~--------------------v~p~~A~~iG~iag~i~~~~~~~l~~~~ 299 (399)
T PF00909_consen 264 AI-TAGAGY--------------------VTPWGALLIGAIAGLISYFGVSWLLKRL 299 (399)
T ss_dssp HH-TTTTTT--------------------S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred he-ecccCC--------------------CcHHHHHHhhhhHhhhhhhheeccccee
Confidence 55 333221 336677777777755433333 355543
Done!