Query 023258
Match_columns 285
No_of_seqs 238 out of 1964
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 2.1E-08 7E-13 76.4 14.3 70 157-226 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.9 5.2E-09 1.8E-13 82.7 8.6 71 157-227 34-105 (137)
3 3b9w_A Ammonium transporter fa 38.8 2.2E+02 0.0077 25.7 13.6 100 149-271 173-277 (407)
4 2b2h_A AMT-1, ammonium transpo 32.7 2.8E+02 0.0095 25.0 13.3 108 150-284 184-298 (399)
5 1u7g_A Probable ammonium trans 14.8 6.3E+02 0.022 22.5 12.6 100 149-272 194-300 (385)
6 3gia_A Uncharacterized protein 12.7 6.6E+02 0.023 21.8 8.1 16 189-204 353-368 (444)
7 3j1z_P YIIP, cation efflux fam 9.3 8.2E+02 0.028 20.5 7.1 27 256-282 119-145 (306)
8 3arc_T Photosystem II reaction 8.6 3.2E+02 0.011 15.2 3.8 12 196-207 18-29 (32)
9 2jp3_A FXYD domain-containing 8.5 2.4E+02 0.0084 18.5 2.5 17 210-226 23-39 (67)
10 1mhs_A Proton pump, plasma mem 8.1 1.5E+03 0.05 22.6 12.8 15 117-131 716-730 (920)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.97 E-value=2.1e-08 Score=76.40 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 023258 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 226 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~ 226 (285)
+...++..++++++.+++++.|.+.+..+ ..+.|+++++++++++||+++..+++|+.++++|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566678889999999999999999888 79999999999999999999999999999999999998654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.89 E-value=5.2e-09 Score=82.75 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH-HhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 023258 157 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 227 (285)
Q Consensus 157 ~~~~~~~~l~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~~~~ 227 (285)
+++.++..++++++.++++++|++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 55666778999999999999999999888 899999999999999999999999999999999999987644
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=38.76 E-value=2.2e+02 Score=25.73 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhhHHHHHH-----HHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 023258 149 PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMAS-----IAARIILREKLKIAEIGGLALSFFGVLFI 223 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~~l~~~~Pl~~~-----ll~~~~l~e~~~~~~~ig~~l~l~Gv~li 223 (285)
+.+...+..++.++.-+++..|.-++..-....-++++...-..+. ++.+++.+.|++.....- -+++|.+-|
T Consensus 173 ~~hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~n--G~LAGLVAI 250 (407)
T 3b9w_A 173 DATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMAN--AALAGGVAI 250 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHH--HTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH--hhhhhhhee
Confidence 3444556666777777888888777432111111222222222222 333333456777654433 234555444
Q ss_pred hccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHH
Q 023258 224 FRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY 271 (285)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~ 271 (285)
.-.... -..+-.++.++++++..-..+
T Consensus 251 Ta~~~~---------------------v~p~~A~iIG~iaG~i~~~~~ 277 (407)
T 3b9w_A 251 GSVCNI---------------------VGPVGAFVIGLLGGAISVVGF 277 (407)
T ss_dssp TTTTTT---------------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCC---------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 322221 235566677777776654444
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=32.71 E-value=2.8e+02 Score=25.02 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcc-c--hhHHHHHHhh----HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 150 MHARNLLVLRALVGFLSLFSFVYSIQRL-P--LSQATVLSFT----APIMASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 150 ~~~~~~l~~~~~~~~l~~~~~~~al~~~-~--~~~a~~l~~~----~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+...+..++.++.-+++..|.-+-... + .+.+.+-.++ .-+..+++.++. .|++.....- -+++|.+-
T Consensus 184 ~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~~~~~~~n--G~lAGLVa 259 (399)
T 2b2h_A 184 PHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKPGSLGIVS--GAIAGLAA 259 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHH--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHH--HHHHhhhh
Confidence 3445566667777777777777543322 1 1112111112 223334445543 6776654432 23445544
Q ss_pred hhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 023258 223 IFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 284 (285)
Q Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v~~r~l~~~~~~p 284 (285)
+. +.-.. -..+-.++.++++++..-....+.+|+ + .|.|
T Consensus 260 IT-a~~~~--------------------v~p~~A~iiG~iag~i~~~~~~l~~kl-~-iDD~ 298 (399)
T 2b2h_A 260 IT-PAAGF--------------------VDVKGAIVIGLVAGIVCYLAMDFRIKK-K-IDES 298 (399)
T ss_dssp HT-TTTTT--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHT-T-CCCT
T ss_pred hc-ccccc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHc-C-CCCC
Confidence 43 32221 235566677777777655545444443 3 4444
No 5
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=14.76 E-value=6.3e+02 Score=22.49 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcc-c--hhHHHHHHhhHH----HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Q 023258 149 PMHARNLLVLRALVGFLSLFSFVYSIQRL-P--LSQATVLSFTAP----IMASIAARIILREKLKIAEIGGLALSFFGVL 221 (285)
Q Consensus 149 ~~~~~~~l~~~~~~~~l~~~~~~~al~~~-~--~~~a~~l~~~~P----l~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~ 221 (285)
+.+...+..++.++.-+++..|.-+-... + .+.+.+-.++.. +-..++.++ .+.|++.....- -+++|..
T Consensus 194 ~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~-~~gk~~~~~~~n--G~lAGLV 270 (385)
T 1u7g_A 194 KPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWA-LRGLPSLLGACS--GAIAGLV 270 (385)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSCCHHHHHH--HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHH--HHHHhhh
Confidence 34455666667777777777777532221 1 112211112222 223333433 467777655433 2344555
Q ss_pred HhhccccccccccCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 023258 222 FIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 272 (285)
Q Consensus 222 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~llsa~~~A~~~v 272 (285)
-+. +.-.. -..+-.++.++++++..-....
T Consensus 271 aIT-a~~~~--------------------v~p~~A~iiG~iag~i~~~~~~ 300 (385)
T 1u7g_A 271 GVT-PACGY--------------------IGVGGALIIGVVAGLAGLWGVT 300 (385)
T ss_dssp HHT-TTTTT--------------------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-cCCCC--------------------CCHHHHHHHHhHHHHHHHHHHH
Confidence 443 32221 3356677777777776544444
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=12.74 E-value=6.6e+02 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhcCc
Q 023258 189 APIMASIAARIILREK 204 (285)
Q Consensus 189 ~Pl~~~ll~~~~l~e~ 204 (285)
.......++.+.++++
T Consensus 353 ~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 353 VIYLFVILSHYILIDE 368 (444)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3333344455555443
No 7
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=9.25 E-value=8.2e+02 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 023258 256 AVLVGLFSSITGGISYCLIKAGANASD 282 (285)
Q Consensus 256 G~l~~llsa~~~A~~~v~~r~l~~~~~ 282 (285)
++..++++.+.-...+.+.|+..++.+
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (306)
T 3j1z_P 119 GVVVSVVAIVLTLALVLLQKRALAATN 145 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chhhhhhHhhhhHHHHHHHHHhccccC
Confidence 334444443333333444444444433
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=8.56 E-value=3.2e+02 Score=15.23 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=7.1
Q ss_pred HHHHHhcCcCcH
Q 023258 196 AARIILREKLKI 207 (285)
Q Consensus 196 l~~~~l~e~~~~ 207 (285)
+-.++++|+|..
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 334557887753
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.51 E-value=2.4e+02 Score=18.54 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhcc
Q 023258 210 IGGLALSFFGVLFIFRR 226 (285)
Q Consensus 210 ~ig~~l~l~Gv~li~~~ 226 (285)
+++.++.++|++++...
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45566677888887755
No 10
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=8.07 E-value=1.5e+03 Score=22.63 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHHH
Q 023258 117 SIPLFETVFMRCTVT 131 (285)
Q Consensus 117 ~~~p~~~~~~R~~~a 131 (285)
.+++..+++.-.+..
T Consensus 716 ~l~~~~il~~~l~~d 730 (920)
T 1mhs_A 716 SLNIELVVFIAIFAD 730 (920)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHH
Confidence 367766655554443
Done!